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Nicolas Férey

Maitre de Conférence en Informatique à l'Université Paris Saclay Enseignement : IUT d'Orsay, département informatique Recherche : Laboratoire Interdisciplinaire des Sciences du Numérique (LISN), équipe Réalité Virtuelle et Augmentée VENISE.
47
Documents
Current affiliations
  • 1061259
  • 1062144
Researcher identifiers
  • IdHAL nicolas-ferey
  • ResearcherId : N-7962-2013
  • ORCID 0000-0002-7713-001X
  • IdRef : 112360025
  • Google Scholar : https://scholar.google.fr/citations?user=lXethhQAAAAJ
  • ResearcherId : http://www.researcherid.com/rid/N-7962-2013
Contact

Presentation

Docteur en informatique de l’Université Paris-Sud (devenue Université Paris-Saclay), Nicolas Ferey est, depuis 2009, maître de conférences à l’Université Paris Sud (devenue Université Paris-Saclay). Son enseignement au département informatique de l’IUT d’Orsay porte sur l’ingénierie logicielle, en base de données, en interaction humain machine, en bioinformatique et il réalise ses activités de recherche, au sein de l’équipe Venise du Laboratoire d’informatique pour la mécanique et les sciences de l’ingénieur (LIMSI, devenu Laboratoire interdisciplinaire des sciences du numérique (LISN) – Univ. Paris-Saclay/CNRS), dans le domaine de la réalité virtuelle et augmentée, à la fois sur des questions fondamentales (réalisme de l'interaction, présence, mal du simulateur...) et des outils pour la recherche ou l'industrie, notamment pour la biologique moléculaire. Investi dans la vie de l’IUT et de l’université, il a été, de 2010 à 2021, membre de la Commission consultative de spécialistes de l’université (CCSU) informatique, et est depuis 2015 membre du Conseil d’administration de l’IUT d’Orsay, membre du Comité d'hygiène, de sécurité et des conditions de travail (CHSCT) spécial de l’IUT d’Orsay, et de la Formation spécialisée en matière de santé, sécurité et conditions de travail (F3SCT) de l’IUT d’Orsay.

Research domains

Bioinformatics [q-bio.QM] Human-Computer Interaction [cs.HC] Graphics [cs.GR] Molecular biology Computer Science [cs]

Publications

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Design – a new way to look at old molecules

Davide Spalvieri , Anne-Marine Mauviel , Matthieu Lambert , Nicolas Férey , Sophie Sacquin-Mora
Journal of Integrative Bioinformatics, 2022, 19 (2), pp.20220020. ⟨10.1515/jib-2022-0020⟩
Journal articles hal-03793308v1
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Fast and Interactive Positioning of Proteins within Membranes

André Lanrezac , Benoist Laurent , Hubert Santuz , Nicolas Férey , Marc Baaden
Algorithms, 2022, 15 (11), pp.415. ⟨10.3390/a15110415⟩
Journal articles hal-03873725v1
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Wielding the power of interactive molecular simulations

André Lanrezac , Nicolas Férey , Marc Baaden
Wiley Interdisciplinary Reviews: Computational Molecular Science, 2021, 12 (4), pp.e1594. ⟨10.1002/WCMS.1594⟩
Journal articles hal-03447181v1
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Physical, Modular and Articulated Interface for Interactive Molecular Manipulation

Bastien Vincke , Mohamed Anis Ghaoui , Nicolas Ferey , Xavier Martinez
Sensors, 2020, 20 (18), pp.5415. ⟨10.3390/s20185415⟩
Journal articles hal-03030681v1
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Dystrophin's central domain forms a complex filament that becomes disorganized by in-frame deletions

Olivier Delalande , Anne-Elisabeth Molza , Raphael dos Santos Morais , Angélique Chéron , Emeline Pollet
Journal of Biological Chemistry, 2018, 293 (18), pp.6637-6646. ⟨10.1074/jbc.M117.809798⟩
Journal articles hal-01795395v2
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Semantics for an Integrative and Immersive Pipeline Combining Visualization and Analysis of Molecular Data

Mikael Trellet , Nicolas Ferey , Jakub Flotyński , Marc Baaden , Patrick Bourdot
Journal of Integrative Bioinformatics, 2018, 15 (2), pp.20180004. ⟨10.1515/jib-2018-0004⟩
Journal articles hal-01935586v1
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Ten simple rules to create a serious game, illustrated with examples from structural biology

Marc Baaden , Olivier Delalande , Nicolas Ferey , Samuela Pasquali , Jérôme Waldispühl
PLoS Computational Biology, 2018, 14 (3), pp.e1005955. ⟨10.1371/journal.pcbi.1005955⟩
Journal articles hal-01744190v1

3D reconstruction with a markerless tracking method of flexible and modular molecular physical models: towards tangible interfaces

Xavier Martinez , Nicolas Férey , Jean-Marc Vézien , Patrick Bourdot
Journal of Virtual Reality and Broadcasting, 2017, pp.1-12
Journal articles hal-02351533v1
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ExaViz: a Flexible Framework to Analyse, Steer and Interact with Molecular Dynamics Simulations

Matthieu Dreher , Jessica Prevoteau-Jonquet , Mikael Trellet , Marc Piuzzi , Marc Baaden
Faraday Discussions, 2014, Molecular simulations and visualization, 169, pp.119-142. ⟨10.1039/C3FD00142C⟩
Journal articles hal-00942627v1
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Innovative interactive flexible docking method for multi-scale reconstruction elucidates dystrophin molecular assembly

Anne-Elisabeth Molza , Nicolas Férey , Mirjam Czjzek , Elisabeth Le Rumeur , Jean-François Hubert
Faraday Discussions, 2014, 169, pp.45-62. ⟨10.1039/C3FD00134B⟩
Journal articles hal-01018071v1

MANHaptic: A Haptic Adaptive Method for Precise Manipulation, Assembly and Navigation

A. Tek , Marc Baaden , N. Férey , P. Bourdot
International Journal on Human Machine Interaction, 2014, 1, pp.57-63
Journal articles hal-01498081v1

Perceptual Conflicts in a Multi-Stereoscopic Immersive Virtual Environment: Case Study on Face-to-Face Interaction through an Avatar

Weiya Chen , Céline Clavel , Nicolas Férey , Patrick Bourdot
Presence: Teleoperators and Virtual Environments, 2014, 23, pp.410-429
Journal articles hal-01845441v1

Interactive Molecular Dynamics: Scaling up to Large Systems

Matthieu Dreher , Marc Piuzzi , Ahmed Turki , Matthieu Chavent , Marc Baaden
Procedia Computer Science, 2013, 2013 International Conference on Computational Science, 18, pp.20-29. ⟨10.1016/j.procs.2013.05.165⟩
Journal articles hal-01084652v1
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Modeling the early stage of DNA sequence recognition within RecA nucleoprotein filaments.

Adrien Saladin , Christopher Amourda , Pierre Poulain , Nicolas Férey , Marc Baaden
Nucleic Acids Research, 2010, 38 (19), pp.6313-23. ⟨10.1093/nar/gkq459⟩
Journal articles hal-00533099v1
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Multi-resolution approach for interactively locating functionally linked ion binding sites by steering small molecules into electrostatic potential maps using a haptic device.

Olivier Delalande , Nicolas Ferey , Benoist Laurent , Marc Gueroult , Brigitte Hartmann
Pacific Symposium on Biocomputing, 2010, pp.205-15. ⟨10.1142/9789814295291_0023⟩
Journal articles hal-00661430v1
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Multisensory VR interaction for protein-docking in the CoRSAIRe project

Nicolas Férey , Julien Nelson , Christine Martin , Lorenzo Picinali , Guillaume Bouyer
Virtual Reality, 2009, 13 (4), pp.273-293. ⟨10.1007/s10055-009-0136-z⟩
Journal articles hal-01753897v1
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Docking de protéines en réalité virtuelle. Une approche hybride et multimodale

Nicolas Férey , Guillaume Bouyer , Christine Martin , Abdelhamid Drif , Patrick Bourdot
Revue des Sciences et Technologies de l'Information - Série TSI : Technique et Science Informatiques, 2009, 28 (8), pp.983 - 1015. ⟨10.3166/tsi.28.983-1015⟩
Journal articles hal-01753902v1

Complex molecular assemblies at hand via interactive simulations.

Olivier Delalande , Nicolas Férey , Gilles Grasseau , Marc Baaden
Journal of Computational Chemistry, 2009, 30 (15), pp.2375-87. ⟨10.1002/jcc.21235⟩
Journal articles inserm-00713313v1
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Interface moléculaire tangible, modulaire, articulée, sans fil et sans marqueur, basée sur l’internet des objets

Nicolas Férey , Bastien Vincke , Mohamed Anis Ghaoui
33e conférence internationale francophone sur l’Interaction Humain-Machine (IHM'22), AFIHM, Apr 2022, Namur, Belgique
Conference papers hal-03835651v1
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Interactive simulation for easy decision-making in fluid dynamics

Mengchen Wang , Nicolas Férey , Frédéric Magoulès , Patrick Bourdot
42nd Annual Conference of the European Association for Computer Graphics, (Eurographics 2021), May 2021, Vienna, Austria. ⟨10.2312/egs.20211022⟩
Conference papers hal-03328156v1
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ARPads: Mid-air Indirect Input for Augmented Reality

Eugenie Brasier , Olivier Chapuis , Nicolas Ferey , Jeanne Vezien , Caroline Appert
2020 IEEE International Symposium on Mixed and Augmented Reality (ISMAR), Nov 2020, Porto de Galinhas, Brazil. pp.332-343, ⟨10.1109/ISMAR50242.2020.00060⟩
Conference papers hal-02915795v1
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Interactive 3D Fluid Simulation: Steering the Simulation in Progress Using Lattice Boltzmann Method

Mengchen Wang , Nicolas Ferey , Patrick Bourdot , Frédéric Magoulès
2019 18th International Symposium on Distributed Computing and Applications for Business Engineering and Science (DCABES), Nov 2019, Wuhan, China. pp.72-75, ⟨10.1109/DCABES48411.2019.00025⟩
Conference papers hal-02399846v1
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Using Asynchronous Simulation Approach for Interactive Simulation

Mengchen Wang , Nicolas Ferey , Patrick Bourdot , Frédéric Magoulès
2019 18th International Symposium on Distributed Computing and Applications for Business Engineering and Science (DCABES), Nov 2019, Wuhan, China. pp.84-87, ⟨10.1109/DCABES48411.2019.00028⟩
Conference papers hal-02399881v1

Modular and Flexible Tangible Molecular Interface for Interactive Molecular Simulation Based on Internet of Things Approach

Bastien Vincke , Mohamed Anis Ghaoui , Nicolas Férey , Xavier Martinez , Loïc Brochot
International Conference on Virtual Reality and Augmented Reality. EuroVR 2019, Oct 2019, Tallinn, Estonia. pp.24-32, ⟨10.1007/978-3-030-31908-3_2⟩
Conference papers hal-04054589v1

Analyzing Interaction Dynamics at the Fuzzy Front-End of Innovation Projects: A Tool for Prospective Ergonomics

Julien Nelson , Xavier Malon , Nicolas Férey
20th Congress of the International Ergonomics Association (IEA 2018), International Ergonomics Association, Aug 2018, Florence, France. pp.1001-1007, ⟨10.1007/978-3-319-96071-5_102⟩
Conference papers hal-04425055v1
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Interactive Visual Analytics of Molecular Data in Immersive Environments via a Semantic Definition of the Content and the Context

Mickael Trellet , Nicolas Férey , Marc Baaden , Patrick Bourdot
IEEE VR 2016/VR 2016 Workshop on Immersive Analytics, Mar 2016, Greenville, SC, United States. pp.48-53, ⟨10.1109/IMMERSIVE.2016.7932383⟩
Conference papers hal-01497990v1
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Remote Collaboration across Heterogeneous Large Interactive Spaces

Cédric Fleury , Nicolas Ferey , Jean-Marc Vézien , Patrick Bourdot
IEEE VR International Workshop on 3D Collaborative Virtual Environments (3DCVE 2015), Mar 2015, Arles, France. ⟨10.1109/3DCVE.2015.7153591⟩
Conference papers hal-01242306v1
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Characterizing the Influence of Motion Parameters on Performance when Acquiring Moving Targets

Alexandre Kouyoumdjian , Nicolas Ferey , Patrick Bourdot , Stéphane Huot
15th Human-Computer Interaction (INTERACT), Sep 2015, Bamberg, Germany. pp.148-155, ⟨10.1007/978-3-319-22723-8_12⟩
Conference papers hal-01207511v1

Content and task based navigation for structural biology in 3D environments

M. Trellet , N. Ferey , Marc Baaden , P. Bourdot
Virtual and Augmented Reality for Molecular Science (VARMS@IEEEVR), 2015 IEEE 1st International Workshop on, Mar 2015, Arles, France. pp.31--36, ⟨10.1109/VARMS.2015.7151726⟩
Conference papers hal-01498020v1
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Content-guided Navigation in Multimeric Molecular Complexes

M. Trellet , Nicolas Férey , M. Baaden , P. Bourdot
BIOIMAGING 2014 - Proceedings of the International Conference on Bioimaging, ESEO, Angers, Loire Valley, France, 3-6 March, 2014, 2014, Angers, France. pp.76--81, ⟨10.5220/0004914300760081⟩
Conference papers hal-01498053v1
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Interactive Molecular Dynamics: Scaling up to Large Systems

Matthieu Dreher , Marc Piuzzi , Turki Ahmed , Chavent Matthieu , Marc Baaden
International Conference on Computational Science, ICCS 2013, Jun 2013, Barcelone, Spain
Conference papers hal-00809024v1
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Navigation guidée par le contenu pour l'exploration moléculaire.

M. Trellet , N. Férey , M. Baaden , P. Bourdot
Journées de l’Association Française de Réalité Virtuelle (AFRV), 2013, Laval, France
Conference papers hal-01498083v1
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Using Conceptual Graphs to embed expert knowledge in VR Interactions: Application to Structural Biology

Malik Qasim , Guillaume Bouyer , Nicolas Férey
5th Joint Virtual Reality Conference – JVRC 2013, Dec 2013, Campus Paris Saclay, France
Conference papers hal-01753890v1
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BioSpring: an interactive and multi-resolution software for flexible docking and for mechanical exploration of large biomolecular assemblies

Nicolas Ferey , Olivier Delalande , Marc Baaden
JOBIM 2012 - Journées Ouvertes en Biologie, Informatique et Mathématiques, Jul 2012, Rennes, France. pp.433-434
Conference papers hal-00761683v1

Sensorimotor feedback for interactive realism: evaluation of a haptic driving paradigm for a forklift simulator

Pierre Martin , Nicolas Férey , Céline Clavel , Françoise Darses , Patrick Bourdot
International Conference EuroHaptics, Poika Isokoski; Jukka Springare, Jan 2012, Tampere, Finland
Conference papers hal-01845450v1

From Interactive to Immersive Molecular Dynamics

Nicolas Férey , Olivier Delalande , Gilles Grasseau , Marc Baaden
Workshop in Virtual Reality Interactions and Physical Simulation "VRIPHYS" (2008), 2008, Grenoble, France. pp.89-96, ⟨10.2312/PE/vriphys/vriphys08/089-096⟩
Conference papers hal-03904907v1

User Needs Analysis to Design a 3D Multimodal Protein-Docking Interface

Nicolas Ferey , Guillaume Bouyer , Christine Martin , Patrick Bourdot , Julien Nelson
IEEE Symposium on 3D User Interfaces 2008, Mar 2008, Reno, United States. ⟨10.1109/3DUI.2008.4476602⟩
Conference papers hal-01197539v1

A VR framework for interacting with molecular simulations

Nicolas Férey , Olivier Delalande , Gilles Grasseau , Marc Baaden
the 2008 ACM symposium, Oct 2008, Bordeaux, France. pp.91-94, ⟨10.1145/1450579.1450598⟩
Conference papers hal-03904892v1
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REVIVOS: REalité VIrtuelle pour la construction de VOcabulaires Spécialisés

Nicolas Férey , Nioche Claire Toffano , Taillez Oriane Matte , Rachid Gherbi , W. Turner
18es Journées Francophones d'Ingénierie des Connaissances, Jul 2007, Grenoble, France. not specified
Conference papers hal-00509922v1
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Visual Data Mining of Genomic Databases by Immersive Graph-Based Exploration

Nicolas Férey , Pierre-Emmanuel Gros , Joan Hérisson , Rachid Gherbi
GRAPHITE 2005, 3rd International Conference On Computer Graphics and Interactives Techniques In Autralia and Southeast Asia, 2005, Dunedin, New Zealand. pp.4
Conference papers hal-00145610v1

Combining Applications and Databases Integration Approaches in a Common Distributed Genomic Platform

P. E. Gros , Joan Hérisson , N. Ferey , R. Gherbi
19th International Conference on Advanced Information Networking and Applications (AINA'05) Volume 1 (AINA papers), Mar 2005, Taipei, Taiwan. ⟨10.1109/AINA.2005.136⟩
Conference papers hal-04351647v1

DNA in Virtuo visualization and exploration of 3D genomic structures

Joan Hérisson , P. Gros , N. Férey , O. Magneau , R. Gherbi
AFRIGRAPH04: 3rd International Conference on Computer Graphics, Virtual Reality, Visualization and Interaction in Africa, Nov 2005, Stellenbosch South Africa, South Africa. pp.35-40, ⟨10.1145/1029949.1029955⟩
Conference papers hal-04351628v1
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Interface tangible modulaire, articulée et sans marqueur dédiée à la pédagogie et à la recherche en biologie moléculaire

Nicolas Férey , Bastien Vincke , Mohamed Anis Ghaoui
Congrès du Groupe Graphisme et Modélisation Moléculaire, Sep 2021, Lille, France. , Actes du congrès du GGMM 2021, 2021
Conference poster hal-04582042v1
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A Multimodal VR Framework for Interactive Molecular Simulations

Alex Tek , Benoist Laurent , Nicolas Férey , Marc Baaden
EuroVR-EVE 2010, Nov 2010, Orsay, France
Conference poster hal-03977463v1
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Interactive Molecular Dynamics

André Lanrezac , Nicolas Férey , Marc Baaden
Comprehensive Computational Chemistry, 3, Elsevier, pp.454-474, 2024, ⟨10.1016/B978-0-12-821978-2.00115-X⟩
Book sections hal-04307111v1

Advances in Human-Protein Interaction - Interactive and Immersive Molecular Simulations

Alex Tek , Benoist Laurent , Marc Piuzzi , Zhihan Lu , Matthieu Chavent
Weibo Cai and Hao Hong. Biochemistry, Genetics and Molecular Biology " "Protein-Protein Interactions - Computational and Experimental Tools", InTech, pp.27-65, 2012, 978-953-51-0397-4. ⟨10.5772/36568⟩
Book sections hal-00760181v1