Nicolas Henry

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Publications

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Nitrogen concentration shapes the size structure and the functional diversity of phytoplankton communities in the southern Indian Ocean

Hugo Berthelot , Joanna Zukowska , Nicolas Henry , Cyril Noël , Melilotus Thyssen et al.

ISME Communications, 2025, 5 (1), pp.ycaf195. ⟨10.1093/ismeco/ycaf195⟩

Article dans une revue hal-05403677v1
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Seasonal transition in the dominance of photoautotrophic and heterotrophic protists in the photic layer of a subtropical marine ecosystem

Yoav Avrahami , Raffaele Siano , Maxim Rubin‐blum , Gil Koplovitz , Nicolas Henry et al.

Environmental Microbiology Reports, 2025, 17 (4), pp.e70126. ⟨10.1111/1758-2229.70126⟩

Article dans une revue hal-05206183v1
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A Practical Comparison of Short‐ and Long‐Read Metabarcoding Sequencing: Challenges and Solutions for Plastid Read Removal and Microbial Community Exploration of Seaweed Samples

Coralie Rousseau , Nicolas Henry , Sylvie Rousvoal , Gwenn Tanguy , Erwan Legeay et al.

Molecular Ecology Resources, 2025, 25 (7), ⟨10.1111/1755-0998.14129⟩

Article dans une revue hal-05273465v1
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Omics exploration of deep-sea biodiversity: data from the “Pourquoi Pas les Abysses?” and eDNAbyss projects

Sophie Arnaud-Haond , Blandine Trouche , Cathy Liautard-Haag , Karine Alain , Johanne Aubé et al.

Scientific Data , 2025, 12 (1), pp.1982. ⟨10.1038/s41597-025-06009-1⟩

Article dans une revue hal-05434404v1
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Patterns and drivers of diatom diversity and abundance in the global ocean

Juan Pierella Karlusich , Karen Cosnier , Lucie Zinger , Nicolas Henry , Charlotte Nef et al.

Nature Communications, 2025, 16 (1), pp.3452. ⟨10.1038/s41467-025-58027-7⟩

Article dans une revue hal-05138560v1

Diverse patterns of correspondence between protist metabarcodes and protist metagenome-assembled genomes

Daryna Zavadska , Nicolas Henry , Adrià Auladell , Cédric Berney , Daniel Richter

PLoS ONE, 2024, 19 (6), pp.e0303697. ⟨10.1371/journal.pone.0303697⟩

Article dans une revue hal-04908413v1

How good are global DNA ‐based environmental surveys for detecting all protist diversity? Arcellinida as an example of biased representation

Fernando Useros , Iván García-Cunchillos , Nicolas Henry , Cédric Berney , Enrique Lara

Environmental Microbiology, 2024, 26 (3), ⟨10.1111/1462-2920.16606⟩

Article dans une revue hal-04927460v1
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The global genetic diversity of planktonic foraminifera reveals the structure of cryptic speciation in plankton

Raphaël Morard , Kate Darling , Agnes Weiner , Christiane Hassenrück , Chiara Vanni et al.

Biological Reviews, 2024, 99 (4), pp.1218-1241. ⟨10.1111/brv.13065⟩

Article dans une revue hal-04552961v1
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O short'branch Microsporidia, where art thou? Identifying diversity hotspots for future sampling

Megan Gross , Ľubomír Rajter , Frédéric Mahé , David Bass , Cédric Berney et al.

European Journal of Protistology, 2024, 96, pp.126119. ⟨10.1016/j.ejop.2024.126119⟩

Article dans une revue hal-04908383v1
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Inter-comparison of marine microbiome sampling protocols

Francisco Pascoal , Maria Paola Tomasino , Roberta Piredda , Grazia Marina Quero , Luís Torgo et al.

ISME Communications, 2023, 3 (1), pp.84. ⟨10.1038/s43705-023-00278-w⟩

Article dans une revue hal-04239634v1
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Diversity of the Pacific Ocean coral reef microbiome

Pierre Galand , Hans-Joachim Ruscheweyh , Guillem Salazar , Corentin Hochart , Nicolas Henry et al.

Nature Communications, 2023, 14 (1), pp.3039. ⟨10.1038/s41467-023-38500-x⟩

Article dans une revue hal-04176291v1
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Pan-Arctic plankton community structure and its global connectivity

Federico M Ibarbalz , Nicolas Henry , Frédéric Mahé , Mathieu Ardyna , Adriana Zingone et al.

Elementa: Science of the Anthropocene, 2023, 11 (1), pp.00060. ⟨10.1525/elementa.2022.00060⟩

Article dans une revue hal-04267640v1
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Predicting global distributions of eukaryotic plankton communities from satellite data

Hiroto Kaneko , Hisashi Endo , Nicolas Henry , Cédric Berney , Frédéric Mahé et al.

ISME Communications, 2023, 3 (1), pp.101. ⟨10.1038/s43705-023-00308-7⟩

Article dans une revue hal-04394784v1
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Ocean-wide comparisons of mesopelagic planktonic community structures

Janaina Rigonato , Marko Budinich , Alejandro Murillo , Manoela Brandão , Juan Pierella Karlusich et al.

ISME Communications, 2023, 3 (1), pp.83. ⟨10.1038/s43705-023-00279-9⟩

Article dans une revue hal-04184772v1
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Plankton Planet: A frugal, cooperative measure of aquatic life at the planetary scale

Colomban de Vargas , Noan Le Bescot , Thibaut Pollina , Nicolas Henry , Sarah Romac et al.

Frontiers in Marine Science, 2022, 9, pp.936972. ⟨10.3389/fmars.2022.936972⟩

Article dans une revue hal-03788523v1
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A robust approach to estimate relative phytoplankton cell abundances from metagenomes

Juan José Pierella Karlusich , Eric Pelletier , Lucie Zinger , Fabien Lombard , Adriana Zingone et al.

Molecular Ecology Resources, 2022, 23 (1), pp.16-40. ⟨10.1111/1755-0998.13592⟩

Article dans une revue hal-03559541v1
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Exploring the phycosphere of Emiliania huxleyi : from bloom dynamics to microbiome assembly experiments

Mariana Câmara dos Reis , Sarah Romac , Florence Le Gall , Dominique Marie , Miguel Frada et al.

Molecular Ecology, In press, ⟨10.1111/mec.16829⟩

Article dans une revue hal-03596404v3
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Patterns of eukaryotic diversity from the surface to the deep-ocean sediment

Tristan Cordier , Inès Barrenechea Angeles , Nicolas Henry , Franck Lejzerowicz , Cédric Berney et al.

Science Advances , 2022, 8 (5), ⟨10.1126/sciadv.abj9309⟩

Article dans une revue hal-03561462v1
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Genomic evidence for global ocean plankton biogeography shaped by large-scale current systems

Daniel Richter , Romain Watteaux , Thomas Vannier , Jade Leconte , Paul Frémont et al.

eLife, 2022, 11, pp.e78129. ⟨10.7554/eLife.78129⟩

Article dans une revue hal-02399723v2
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Seasonal dynamics of marine protist communities in tidally mixed coastal waters

Mariarita Caracciolo , Fabienne Rigaut-Jalabert , Sarah Romac , Frédéric Mahé , Samuel Forsans et al.

Molecular Ecology, 2022, 31 (14), pp.3761-3783. ⟨10.1111/mec.16539⟩

Article dans une revue hal-03781932v1
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Environmental vulnerability of the global ocean epipelagic plankton community interactome

Samuel Chaffron , Erwan Delage , Marko Budinich , Damien Vintache , Nicolas Henry et al.

Science Advances , 2021, 7 (35), pp.eabg1921. ⟨10.1126/sciadv.abg1921⟩

Article dans une revue hal-03443359v2
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Evaluating sediment and water sampling methods for the estimation of deep-sea biodiversity using environmental DNA

Miriam I Brandt , Florence Pradillon , Blandine Trouche , Nicolas Henry , Cathy Liautard-Haag et al.

Scientific Reports, 2021, 11 (1), pp.7856. ⟨10.1038/s41598-021-86396-8⟩

Article dans une revue hal-03198097v1
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The Ocean Barcode Atlas: a web service to explore the biodiversity and biogeography of marine organisms.

Caroline Vernette , Nicolas Henry , Julien Lecubin , Colomban de Vargas , Pascal Hingamp et al.

Molecular Ecology Resources, 2021, ⟨10.1111/1755-0998.13322⟩

Article dans une revue hal-03115219v1
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Macroscale patterns of oceanic zooplankton composition and size structure

Manoela Brandão , Fabio Benedetti , Séverine Martini , Yawouvi Dodji Soviadan , Jean-Olivier Irisson et al.

Scientific Reports, 2021, 11 (1), pp.15714. ⟨10.1038/s41598-021-94615-5⟩

Article dans une revue hal-03318806v1
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Eukaryotic virus composition can predict the efficiency of carbon export in the global ocean

Hiroto Kaneko , Romain Blanc-Mathieu , Hisashi Endo , Samuel Chaffron , Tom Delmont et al.

iScience, 2021, 24 (1), pp.102002. ⟨10.1016/j.isci.2020.102002⟩

Article dans une revue hal-03097258v3
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An assessment of environmental metabarcoding protocols aiming at favoring contemporary biodiversity in inventories of deep-sea communities

Miriam Brandt , Blandine Trouche , Nicolas Henry , Cathy Liautard-Haag , Lois Maignien et al.

Frontiers in Marine Science, 2020, 7, pp.234. ⟨10.3389/fmars.2020.00234⟩

Article dans une revue hal-03410860v1
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Biogeography of marine giant viruses reveals their interplay with eukaryotes and ecological functions

Hisashi Endo , Romain Blanc-Mathieu , Yanze Li , Guillem Salazar , Nicolas Henry et al.

Nature Ecology & Evolution, 2020, 4 (12), pp.1639-1649. ⟨10.1038/s41559-020-01288-w⟩

Article dans une revue hal-02974168v1
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Global Trends in Marine Plankton Diversity across Kingdoms of Life

Federico Ibarbalz , Nicolas Henry , Manoela Brandão , Severine Martini , Greta Busseni et al.

Cell, 2019, 179 (5), pp.1084-1097.e21. ⟨10.1016/j.cell.2019.10.008⟩

Article dans une revue hal-03094778v1
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Coupling between taxonomic and functional diversity in protistan coastal communities

Pierre Ramond , Marc Sourisseau , Nathalie Simon , Sarah Romac , Sophie Schmitt et al.

Environmental Microbiology, 2019, 21 (2), pp.730-749. ⟨10.1111/1462-2920.14537⟩

Article dans une revue hal-03971181v1

Worldwide Occurrence and Activity of the Reef-Building Coral Symbiont Symbiodinium in the Open Ocean

Johan Decelle , Quentin Carradec , Xavier Pochon , Nicolas Henry , Sarah Romac et al.

Current Biology, 2018, 28 (22), pp.3625-3633.e3. ⟨10.1016/j.cub.2018.09.024⟩

Article dans une revue hal-02194113v1

The symbiotic life of Symbiodinium in the open ocean within a new species of calcifying ciliate (Tiarina sp.)

Solenn Mordret , Sarah Romac , Nicolas Henry , Sebastien Colin , Margaux Carmichael et al.

The International Society of Microbiologial Ecology Journal, 2016, 10 (6), pp.1424-1436. ⟨10.1038/ismej.2015.211⟩

Article dans une revue hal-01258214v1
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Eukaryotic plankton diversity in the sunlit ocean

Noan Le Bescot , Ian Probert , Margaux Carmichael , Julie Poulain , Sarah Romac et al.

Science, 2015, 348 (6237), pp.1261605. ⟨10.1126/science.1261605⟩

Article dans une revue hal-01253979v1

Determinants of community structure in the global plankton interactome

Gipsi Lima-Mendez , Karoline Faust , Nicolas Henry , Johan Decelle , Sébastien Colin et al.

Science, 2015, 348 (6237), pp.1262073. ⟨10.1126/science.1262073⟩

Article dans une revue hal-01234200v1

Physiological responses of Manila clams Venerupis (=Ruditapes) philippinarum with varying parasite Perkinsus olseni burden to toxic algal Alexandrium ostenfeldii exposure.

Malwenn Lassudrie , Philippe Soudant , Gaëlle Richard , Nicolas Henry , Walid Medhioub et al.

Aquatic Toxicology, 2014, 154, pp.27-38. ⟨10.1016/j.aquatox.2014.05.002⟩

Article dans une revue hal-01023217v1