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Nicolas Chen

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Celebrating the 20th anniversary of the first Xanthomonas genome sequences – how genomics revolutionized taxonomy, provided insight into the emergence of pathogenic bacteria, enabled new fundamental discoveries and helped developing novel control measures – a perspective from the French network on Xanthomonads

Ralf Koebnik , Sophie Cesbron , Nicolas W. G. Chen , Marion Fischer-Le Saux , Mathilde Hutin
Peer Community Journal, 2024, 4, pp.e19. ⟨10.24072/pcjournal.385⟩
Article dans une revue ird-04483657v1
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First whole genome assembly and annotation of a European common bean cultivar using PacBio HiFi and Iso-Seq data

Sébastien Carrère , Baptiste Mayjonade , David Lalanne , Sylvain Gaillard , Jérôme Verdier
Data in Brief, 2023, 48, pp.109182. ⟨10.1016/j.dib.2023.109182⟩
Article dans une revue hal-04089846v1
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Improving common bacterial blight phenotyping by using rub-inoculation and machine learning: cheaper, better, faster, stronger

Justine Foucher , Mylène Ruh , Martial Briand , Anne Préveaux , Florian Barbazange
Phytopathology, 2022, 112 (3), pp.691-699. ⟨10.1094/phyto-04-21-0129-r⟩
Article dans une revue hal-03345026v1

Complete and Circularized Genome Sequences of 17 Xanthomonas Strains Responsible for Common Bacterial Blight of Bean

Martial Briand , Mylène Ruh , Armelle Darrasse , Marie-Agnès Jacques , Nicolas W. G. Chen
Microbiology Resource Announcements, 2021, 10 (31), pp.e00371. ⟨10.1128/MRA.00371-21⟩
Article dans une revue hal-03344454v1
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Common bacterial blight of bean: a model of seed transmission and pathological convergence

Nicolas W. G. Chen , Mylène Ruh , Armelle Darrasse , Justine Foucher , Martial Briand
Molecular Plant Pathology, In press, pp.Early Access. ⟨10.1111/mpp.13067⟩
Article dans une revue hal-03228925v1

Complete and Circularized Genome Sequences of Three Xanthomonas Strains Pathogenic on Soybean and Alfalfa

Mylène Ruh , Martial Briand , Sophie Bonneau , Armelle Darrasse , Marie-Agnès Jacques
Microbiology Resource Announcements, 2021, 10 (31), ⟨10.1128/MRA.00537-21⟩
Article dans une revue hal-03349711v1
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Common bean resistance to Xanthomonas is associated with upregulation of the salicylic acid pathway and downregulation of photosynthesis

Justine Foucher , Mylène Ruh , Anne Preveaux , Sébastien Carrere , Sandra Pelletier
BMC Genomics, 2020, 21 (1), pp.566. ⟨10.1186/s12864-020-06972-6⟩
Article dans une revue hal-02945634v1
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Common Bean Subtelomeres Are Hot Spots of Recombination and Favor Resistance Gene Evolution

Nicolas W. G. Chen , Vincent Thareau , Tiago Ribeiro , Ghislaine Magdelenat , Tom Ashfield
Frontiers in Plant Science, 2018, 9, pp.1185. ⟨10.3389/fpls.2018.01185⟩
Article dans une revue cea-02291355v1
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Horizontal gene transfer plays a major role in the pathological convergence of Xanthomonas lineages on common bean

Nicolas Chen , Laurana Serres-Giardi , Mylène Ruh , Martial Briand , Sophie Bonneau
BMC Genomics, 2018, 19 (1), 20 p. ⟨10.1186/s12864-018-4975-4⟩
Article dans une revue hal-02627510v1
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Xanthomonas adaptation to common bean is associated with horizontal transfers of genes encoding TAL effectors

Mylène Ruh , Martial Briand , Sophie Bonneau , Marie Agnes Jacques , Nicolas W. G. Chen
BMC Genomics, 2017, 18, pp.1-18. ⟨10.1186/s12864-017-4087-6⟩
Article dans une revue hal-02620418v1
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First Complete Genome Sequences of Xanthomonas citri pv. vignicola Strains CFBP7111, CFBP7112, and CFBP7113 Obtained Using Long-Read Technology

Mylène Ruh , Martial Briand , Sophie Bonneau , Marie-Agnès Jacques , Nicolas Chen
Genome Announcements , 2017, 5 (36), pp.e00813-17. ⟨10.1128/genomeA.00813-17⟩
Article dans une revue hal-03314799v1

Using Ecology, Physiology, and Genomics to Understand Host Specificity in Xanthomonas

Marie-Agnès Jacques , Matthieu Arlat , Alice Boulanger , Tristan Boureau , Sébastien Carrère
Annual Review of Phytopathology, 2016, 54 (1), pp.163-187. ⟨10.1146/annurev-phyto-080615-100147⟩
Article dans une revue hal-03383508v1

Immunity to plant pathogens and iron homeostasis

Aude Aznar , Nicolas W. G. Chen , Sébastien Thomine , Alia Dellagi
Plant Science, 2015, 240, pp.90 - 97. ⟨10.1016/j.plantsci.2015.08.022⟩
Article dans une revue hal-01401768v1

Scavenging iron: a novel mechanism of plant immunity activation by microbial siderophores

Aude Aznar , Nicolas W. G. Chen , Martine Rigault , Nassima Riache , Delphine Joseph
Plant Physiology, 2014, 164 (4), pp.2167-2183. ⟨10.1104/pp.113.233585⟩
Article dans une revue hal-01204049v1

Identification and characterization of functional centromeres of the common bean

Aiko Iwata , Ahmet L. Tek , Manon M. S. Richard , Brian Abernathy , Artur Fonseca
Plant Journal, 2013, 76 (1), pp.47 - 60. ⟨10.1111/tpj.12269⟩
Article dans une revue hal-02643881v1
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The subtelomeric khipu satellite repeat from Phaseolus vulgaris: lessons learned from the genome analysis of the Andean genotype G19833

Manon M. S. Richard , Nicolas W. G. Chen , Vincent Thareau , Stéphanie Pflieger , Sophie Blanchet
Frontiers in Plant Science, 2013, 4, ⟨10.3389/fpls.2013.00109⟩
Article dans une revue hal-02649546v1

Evolution of a Complex Disease Resistance Gene Cluster in Diploid Phaseolus and Tetraploid Glycine

T. Ashfield , A.N. Egan , B.E. Pfeil , Nicolas W. G. Chen , R. Podicheti
Plant Physiology, 2012, 159, pp.336-354. ⟨10.1104/pp.112.195040⟩
Article dans une revue hal-00921326v1

What Is Present at Common Bean Subtelomeres? Large Resistance Gene Clusters, Knobs and Khipu Satellite DNA

Manon M. S. Richard , Vincent Thareau , Nicolas Chen , Chouaïb Meziadi , Stéphanie Pflieger
The Common Bean Genome, Chapter 9, SPRINGER INTERNATIONAL PUBLISHING AG, 294 p., 2017, Compendium of Plant Genomes, 978-3-319-63524-8. ⟨10.1007/978-3-319-63526-2_9⟩
Chapitre d'ouvrage hal-02786066v1