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Oryza genome evolution through a tetraploid lens
Alice Fornasiero
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Tao Feng
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Noor Al-Bader
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Aseel Alsantely
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Saule Mussurova
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Article dans une revue
hal-05063705
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Genome of the early spider-orchid Ophrys sphegodes provides insights into sexual deception and pollinator adaptation
Alessia Russo
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Mattia Alessandrini
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Moaine El Baidouri
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Daniel Frei
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Article dans une revue
hal-04664022
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Genome-wide analysis of horizontal transfer in non-model wild species from a natural ecosystem reveals new insights into genetic exchange in plants
Emilie Aubin
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Christel Llauro
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Joseph Garrigue
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Marie Mirouze
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Olivier Panaud
et al.
Article dans une revue
hal-04274792
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Horizontal Gene Transfers in Plants
Emilie Aubin
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Moaine El Baidouri
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Olivier Panaud
Article dans une revue
hal-03443232
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Whole plastid genome-based phylogenomics supports an inner placement of the O. insectifera group rather than a basal position in the rapidly diversifying Ophrys genus (Orchidaceae)
Joris Bertrand
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Anaïs Gibert
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Christel Llauro
,
Olivier Panaud
Article dans une revue
hal-03375011
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The Ecology of the Genome and the Dynamics of the Biological Dark Matter
Alheli Flores-Ferrer
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Anne Nguyen
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Sylvain Glémin
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Jean-Marc Deragon
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Olivier Panaud
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Article dans une revue
hal-03157289
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Construction and characterisation of a knock-down RNA interference line of OsNRPD1 in rice (Oryza sativa ssp japonica cv Nipponbare)
Emilie Debladis
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Tzuu-Fen Lee
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Yan-Jiun Huang
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Jui-Hsien Lu
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Sandra M. Mathioni
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Philosophical Transactions of the Royal Society B: Biological Sciences, 2020, 375 (1795), pp.20190338. ⟨10.1098/rstb.2019.0338⟩
Article dans une revue
hal-04274817
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The impact of transposable elements on the structure, evolution and function of the rice genome
Roland Akakpo
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Marie-Christine Carpentier
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Yue Ie Hsing
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Olivier Panaud
Article dans une revue
hal-02434127
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Retrotranspositional landscape of Asian rice revealed by 3000 genomes
Marie-Christine Carpentier
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Ernandes Manfroi
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Fu-Jin Wei
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Hshin-Ping Wu
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Eric Lasserre
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Article dans une revue
hal-02098307
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Characterization of the complete plastome of Ophrys aveyronensis , a Euro-Mediterranean orchid with an intriguing disjunct geographic distribution
Joris Bertrand
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Anaïs Gibert
,
Christel Llauro
,
Olivier Panaud
Article dans une revue
hal-02297851
v1
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Genomes of 13 domesticated and wild rice relatives highlight genetic conservation, turnover and innovation across the genus Oryza
Joshua Stein
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Yeisoo Yu
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Dario Copetti
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Derrick Zwickl
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Li Zhang
et al.
Article dans une revue
hal-02098593
v1
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QTL Mapping Combined With Comparative Analyses Identified Candidate Genes for Reduced Shattering in Setaria italica
Sandra Odonkor
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Soyeon Choi
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Debkanta Chakraborty
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Liliam Martinez-Bello
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Xuewen Wang
et al.
Article dans une revue
hal-02098582
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Oak genome reveals facets of long lifespan
Christophe Plomion
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Jean-Marc Aury
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Joelle Amselem
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Thibault Leroy
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Florent Murat
et al.
Article dans une revue
hal-01820559
v1
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QTL Mapping Combined With Comparative Analyses Identified Candidate Genes for Reduced Shattering in Setaria italica
Sandra Odonkor
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Soyeon Choi
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Debkanta Chakraborty
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Liliam Martinez-Bello
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Xuewen Wang
et al.
Article dans une revue
hal-04296727
v1
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Detection of active transposable elements in Arabidopsis thaliana using Oxford Nanopore Sequencing technology
Emilie Debladis
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Christel Llauro
,
Marie-Christine Carpentier
,
Marie Mirouze
,
Olivier Panaud
Article dans une revue
ird-01626046
v1
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Sequencing the extrachromosomal circular mobilome reveals retrotransposon activity in plants
Sophie Lanciano
,
Marie-Christine Carpentier
,
Christel Llauro
,
Edouard Jobet
,
Dagmara Robakowska-Hyzorek
et al.
Article dans une revue
hal-02098598
v1
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Horizontal transfers of transposable elements in eukaryotes: The flying genes
Olivier Panaud
Article dans une revue
hal-02099878
v1
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DNA transposon activity is associated with increased mutation rates in genes of rice and other grasses
Thomas Wicker
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Yeisoo Yu
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Georg Haberer
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Klaus Mayer
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Pradeep Reddy Marri
et al.
Article dans une revue
hal-02099869
v1
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Evolution of Plant Phenotypes, from Genomes to Traits
Josep Casacuberta
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Scott Jackson
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Olivier Panaud
,
Michael Purugganan
,
Jonathan F. Wendel
Article dans une revue
hal-02099871
v1
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A new approach for annotation of transposable elements using small RNA mapping.
Moaine El Baidouri
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Kyung Do Kim
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Brian Abernathy
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Siwaret Arikit
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Florian Maumus
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Article dans une revue
hal-01215276
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Abiotic stress and genome dynamics: specific genes and transposable elements response to iron excess in rice
Taciane Finatto
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Antonio Costa de Oliveira
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Cristian Chaparro
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L.C. da Maia
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D.R. Farias
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Article dans une revue
hal-01162622
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RiTE database: a resource database for genus-wide rice genomics and evolutionary biology
Dario Copetti
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Jianwei Zhang
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Moaine El Baidouri
,
Dongying Gao
,
Jun Wang
et al.
Article dans une revue
hal-02099881
v1
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Drivers and dynamics of diversity in plant genomes.
Olivier Panaud
,
Scott A Jackson
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Jonathan F Wendel
New Phytologist, 2014, 202 (1), pp.15-8
Article dans une revue
hal-01218167
v1
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The genome sequence of African rice (Oryza glaberrima) and evidence for independent domestication
Muhua Wang
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Yeisoo Yu
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Georg Haberer
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Pradeep Reddy Marri
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Chuanzhu Fan
et al.
Article dans une revue
hal-02099904
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Plant root transcriptome profiling reveals a strain-dependent response during Azospirillum-rice cooperation
Benoît Drogue
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Hervé Sanguin
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Amel Chamam
,
Michael Mozar
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Christel Llauro
et al.
Article dans une revue
hal-02099891
v1
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Widespread and frequent horizontal transfers of transposable elements in plants.
Moaine El Baidouri
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Marie-Christine Carpentier
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Richard Cooke
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Dongying Gao
,
Eric Lasserre
et al.
Article dans une revue
hal-01218140
v1
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Use of Next Generation Sequencing (NGS) Technologies for the Genome-Wide Detection of Transposition
Moaine Elbaidouri
,
Cristian Chaparro
,
Olivier Panaud
Article dans une revue
hal-02102445
v1
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Genome structure and metabolic features in the red seaweed Chondrus crispus shed light on evolution of the Archaeplastida.
Jonas Collén
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Betina Porcel
,
Wilfrid Carré
,
Steven G Ball
,
Cristian Chaparro
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Proceedings of the National Academy of Sciences of the United States of America, 2013, 110 (13), pp.5247-52. ⟨10.1073/pnas.1221259110⟩
Article dans une revue
hal-01073830
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Comparative Genomic Paleontology across Plant Kingdom Reveals the Dynamics of TE-Driven Genome Evolution
Moaine El Baidouri
,
Olivier Panaud
Article dans une revue
hal-02102447
v1
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The banana (Musa acuminata) genome and the evolution of monocotyledonous plants.
Angélique d'Hont
,
France Denoeud
,
Jean-Marc Aury
,
Franc-Christophe Baurens
,
Françoise Carreel
et al.
Article dans une revue
hal-00855582
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Reference genome sequence of the model plant Setaria
Jeffrey Bennetzen
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Jeremy J. Schmutz
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Hao Wang
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Ryan Percifield
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Jennifer Hawkins
et al.
Article dans une revue
hal-02114330
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Isolation and characterisation of a bacterial strain degrading the herbicide sulcotrione from an agricultural soil
Christophe Calvayrac
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Fabrice Martin-Laurent
,
Alexia Faveaux
,
Nathalie Picault
,
Olivier Panaud
et al.
Article dans une revue
hal-01137037
v1
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Comparative genomic paleontology across plant kingdom reveals the dynamics of TE-driven genome evolution.
Moaine El Baidouri
,
Olivier Panaud
Genome Biology and Evolution, 2012, 5 (5), pp.954-65
Article dans une revue
hal-01218174
v1
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International Congress on Transposable Elements (ICTE) 2012 in Saint Malo and the sea of TE stories.
Abdelkader Aïnouche
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Mireille Bétermier
,
Mick Chandler
,
Richard Cordaux
,
Gaël Cristofari
et al.
Article dans une revue
inserm-00764323
v1
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Transpositional landscape of the rice genome revealed by paired-end mapping of high-throughput re-sequencing data
Francois Sabot
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Nathalie Picault
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Moaine El-Baidouri
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Christel Llauro
,
Cristian Chaparro
et al.
Article dans une revue
hal-02114338
v1
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The genome of Theobroma cacao.
Xavier Argout
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Jerome Salse
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Jean-Marc Aury
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Mark J Guiltinan
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Gaetan Droc
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Article dans une revue
hal-00855922
v1
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RDA derived Oryza minuta-specific clones to probe genomic conservation across Oryza and introgression into rice (O. sativa L.)
Junghyun Shim
,
Olivier Panaud
,
Clémentine Vitte
,
Merlyn S. Mendioro
,
Darshan S. Brar
Article dans une revue
istex
hal-02664386
v1
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Paleogenomic analysis of the short arm of chromosome 3 reveals the history of the African and Asian progenitors of cultivated rices.
Anne Roulin
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Cristian Chaparro
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Benoit Piegu
,
Scott Jackson
,
Olivier Panaud
Article dans une revue
hal-00787403
v1
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A genetic model for the female sterility barrier between Asian and African cultivated rice species.
Andrea Garavito
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Romain Guyot
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Jaime Lozano
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Frédérick F. Gavory
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Sylvie Samain
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Article dans une revue
hal-00787398
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Whole genome surveys of rice, maize and sorghum reveal multiple horizontal transfers of the LTR-retrotransposon Route66 in Poaceae.
Anne Roulin
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Benoit Piegu
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Philippe M Fortune
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François Sabot
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Angélique d'Hont
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Article dans une revue
hal-00693471
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Reply: A unified classification system for eukaryotic transposable elements should reflect their phylogeny
Thomas Wicker
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Francois Sabot
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Aurélie Hua-Van
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Jeffrey L. Bennetzen
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Pierre Capy
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Article dans une revue
hal-01189545
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Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas.
Alexandra Z Worden
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Jae-Hyeok Lee
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Thomas Mock
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Pierre Rouzé
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Melinda P Simmons
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Article dans une revue
hal-00693449
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Identification of an active LTR retrotransposon in rice.
Nathalie Picault
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Cristian Chaparro
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Cristel Llauro
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Benoit Piegu
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Willfried Stenger
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Article dans une revue
hal-00685656
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A unified classification system for eukaryotic transposable elements should reflect their phylogeny Reply.
T. Wicker
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F. Sabot
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A. Hua Van
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J. L. Bennetzen
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P. Capy
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Nature Reviews Genetics, 2009, 10, pp.00-00
Article dans une revue
hal-00462118
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The molecular bases of cereal domestication and the history of rice.
Olivier Panaud
Article dans une revue
istex
hal-00693484
v1
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Diversity of the Ty-1 copia retrotransposon Tos17 in rice (Oryza sativa L.) and the AA genome of the Oryza genus.
Julie Petit
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Emmanuelle Bourgeois
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Wilfried Stenger
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Martine Bès
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Gaétan Droc
et al.
Article dans une revue
istex
hal-00693499
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The Rice Annotation Project Database (RAP-DB): 2008 update.
Tsuyoshi Tanaka
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Baltazar A Antonio
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Shoshi Kikuchi
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Takashi Matsumoto
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Yoshiaki Nagamura
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Article dans une revue
hal-00300215
v1
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Identification of precursor transcripts for 6 novel miRNAs expands the diversity on the genomic organisation and expression of miRNA genes in rice.
Séverine Lacombe
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Hiroshi Nagasaki
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Carole Santi
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David Duval
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Benoit Piegu
et al.
Article dans une revue
hal-00366386
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A universal classification of eukaryotic transposable elements implemented in Repbase
Thomas Wicker
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Francois Sabot
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Aurélie Hua-Van
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Jeffrey L. Bennetzen
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Pierre Capy
et al.
Article dans une revue
hal-01189557
v1
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Evidence of multiple horizontal transfers of the long terminal repeat retrotransposon RIRE1 within the genus Oryza
Anne Roulin
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Benoit Piegu
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Rod Wing
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Olivier Panaud
Article dans une revue
hal-02114361
v1
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A unified classification system for eukaryotic transposable elements.
T. Wicker
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F. Sabot
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A. Hua Van
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J. L. Bennetzen
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P. Capy
et al.
Nature Reviews Genetics, 2007, 8, pp.973-982
Article dans une revue
hal-00169819
v1
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Spip and Squiq, two novel rice non-autonomous LTR retro-element families related to RIRE3 and RIRE8
Clémentine Vitte
,
Cristian Chaparro
,
Hadi H. Quesneville
,
Olivier Panaud
Article dans une revue
istex
hal-02114377
v1
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Evolutionary dynamics of an ancient retrotransposon family provides insights into evolution of genome size in the genus Oryza
Jetty Ammiraju
,
Andrea Zuccolo
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Yeisoo Yu
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Xiang Song
,
Benoit Piegu
et al.
Article dans une revue
hal-02114387
v1
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RetrOryza: a database of the rice LTR-retrotransposons.
Cristian Chaparro
,
Romain Guyot
,
Andrea Zuccolo
,
Benoit Piegu
,
Olivier Panaud
Article dans une revue
hal-00164403
v1
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A unified classification system for eukaryotic transposable elements should reflect their phylogeny
Thomas Wicker
,
Francois Sabot
,
Aurélie Hua-Van
,
Jeffrey L. Bennetzen
,
Pierre Capy
et al.
Article dans une revue
hal-01189458
v1
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LTR retrotransposons in rice (Oryza sativa, L.): recent burst amplifications followed by rapid DNA loss
Clémentine Vitte
,
Olivier Panaud
,
Hadi H. Quesneville
Article dans une revue
hal-02114382
v1
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Doubling genome size without polyploidization: dynamics of retrotransposition-driven genomic expansions in Oryza australiensis, a wild relative of rice.
Benoit Piegu
,
Romain Guyot
,
Nathalie Picault
,
Anne Roulin
,
Abhijit Saniyal
et al.
Article dans une revue
hal-00164404
v1
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Genome analysis of the smallest free-living eukaryote Ostreococcus tauri unveils many unique features.
Evelyne Derelle
,
Conchita Ferraz
,
Stephane Rombauts
,
Pierre Rouzé
,
Alexandra Z Worden
et al.
Proceedings of the National Academy of Sciences of the United States of America, 2006, 103 (31), pp.11647-52. ⟨10.1073/pnas.0604795103⟩
Article dans une revue
hal-00164247
v1
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LTR retrotransposons and flowering plant genome size: emergence of the increase/decrease model.
C. Vitte
,
O. Panaud
Article dans une revue
hal-00168793
v1
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LTR retrotransposons and flowering plant genome size: emergence of the increase/decrease model
C. Vitte
,
O. Panaud
Article dans une revue
hal-04305951
v1
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Genomic paleontology provides evidence for two distinct origins of Asian rice (Oryza sativa L.)
C. Vitte
,
T. Ishii
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F. Lamy
,
D. Brar
,
O. Panaud
Article dans une revue
istex
hal-04305849
v1
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Formation of Solo-LTRs Through Unequal Homologous Recombination Counterbalances Amplifications of LTR Retrotransposons in Rice Oryza sativa L.
C. Vitte
,
Olivier Panaud
Article dans une revue
hal-04305865
v1
|
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Characterization of transposable elements in the genome of rice (Oryza sativa L.) using Representational Difference Analysis (RDA)
O. Panaud
,
C. Vitte
,
J. Hivert
,
S. Muzlak
,
J. Talag
et al.
Article dans une revue
istex
hal-04305880
v1
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Unmanaged sexual reproduction and the dynamics of genetic diversity of a vegetatively propagated crop plant, cassava ( Manihot esculenta Crantz), in a traditional farming system
M. Elias
,
L. Penet
,
P. Vindry
,
D. Mckey
,
O. Panaud
et al.
Article dans une revue
istex
hal-04154369
v1
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Assessment of genetic relationships between Setaria italica and its wild relative S. viridis using AFLP markers
Maud Le Thierry D’ennequin
,
Olivier Panaud
,
Bruno Toupance
,
Aboubakry Sarr
Article dans une revue
istex
hal-02123002
v1
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Suivi des introgressions dans les croisements interspécifiques chez le riz: utilisation des marqueurs moléculaires
A Ghesquière
,
O Panaud
,
Philippe Marmey
,
Mc Gavalda
,
O Leblanc
et al.
Article dans une revue
hal-03782059
v1
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Suivi des introgressions dans les croisements interspécifiques chez le riz : utilisation des marqueurs moléculaires
A Ghesquière
,
O Panaud
,
P Marmey
,
Mc Gavalda
,
O Leblanc
et al.
Genetics Selection Evolution, 1994, 26 (Suppl1), pp.67s-80s
Article dans une revue
hal-00894055
v1
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