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Pascal Ferraro

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Publications

Quantitative assessment of automatic reconstructions of branching systems obtained from laser scanning.

Frédéric Boudon , Chakkrit Preuksakarn , Pascal Ferraro , Julien Diener , Philippe Nacry
Annals of Botany, 2014, 114 (4), epub ahead of print. ⟨10.1093/aob/mcu062⟩
Journal articles hal-01064917v1

Efficient chaining of seeds in ordered trees

Julien Allali , Cedric Chauve , Pascal Ferraro , Anne-Laure Gaillard
Journal of Discrete Algorithms, 2012
Journal articles hal-00647714v1
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BRASERO: A resource for benchmarking RNA secondary structure comparison algorithms

Julien Allali , Cédric Saule , Cedric Chauve , Yves d'Aubenton-Carafa , Alain Denise
Advances in Bioinformatics, 2012, 2012, pp.1-5. ⟨10.1155/2012/893048⟩
Journal articles hal-00647725v1
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Quantifying the degree of self-nestedness of trees. Application to the structural analysis of plants

Christophe Godin , Pascal Ferraro
IEEE/ACM Transactions on Computational Biology and Bioinformatics, 2010, 7 (4), pp.688--703
Journal articles hal-00365885v1

Quantifying the degree of self-nestedness of trees: application to the structural analysis of plants

Christophe Godin , Pascal P. Ferraro
IEEE/ACM Transactions on Computational Biology and Bioinformatics, 2010, 7 (4), pp.688-703. ⟨10.1109/tcbb.2009.29⟩
Journal articles hal-01001026v1

Toward a general framework for polyphonic comparison

Julien Allali , Pascal Ferraro , Pierre Hanna , C.S. Iliopoulos , Matthias Robine
Fundamenta Informaticae, 2009, 97 (3), pp.331--346
Journal articles hal-00523428v1

A New Constrained Edit Distance Between Quotiented Ordered Trees

Aida Ouangraoua , Pascal Ferraro
Journal of Discrete Algorithms, 2009, 7 (1), pp.78--89. ⟨10.1016/j.jda.2008.05.001⟩
Journal articles hal-00306611v1

A Constrained Edit Distance Algorithm Between Semi-ordered Trees

Aida Ouangraoua , Pascal Ferraro
Theoretical Computer Science, 2009, 410 (8-10), pp.837-846. ⟨10.1016/j.tcs.2008.11.022⟩
Journal articles hal-00350113v1
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Comparison of Tree Architecture Using Tree Edit Distances: Application to Two-Year-Old Apple Hybrids

Vincent Segura , Aida Ouangraoua , Pascal Ferraro , Evelyne Costes
Euphytica, 2008, 161 (1-2), pp.155--164. ⟨10.1007/s10681-007-9430-6⟩
Journal articles hal-00350109v1

Benchmarking RNA secondary structure comparison algorithms

J. Allali , Y. d'Aubenton-Carafa , C. Chauve , A. Denise , C. Drevet
Proc. JOBIM, 2008, pp.67-68
Journal articles hal-00297167v1
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Local Similarity Between Quotiented Ordered Trees

Pascal Ferraro , Aïda Ouangraoua , Laurent Tichit , Serge Dulucq
Journal of Discrete Algorithms, 2007, 5 (1), pp.23-35
Journal articles hal-00307119v1
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On Optimizing the Editing Algorithms for Evaluating Similarity Between Monophonic Musical Sequences

Pierre Hanna , Pascal Ferraro , Matthias Robine
Journal of New Music Research, 2007, 36, pp.267--279
Journal articles hal-00285560v2
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Toward a quantification of self-similarity in plants

Pascal Ferraro , Christophe Godin , Przemylaw Prusinkiewicz
Fractals, 2005, 13, pp.91-109. ⟨10.1142/S0218348X05002805⟩
Journal articles hal-00307402v1
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Optimal mappings with minimun number of connected components in tree-to-tree comparison problems

Pascal Ferraro , Christophe Godin
Journal of Algorithms in Cognition, Informatics and Logic, 2003, 48, pp.385-406
Journal articles hal-00306620v1
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An edit distance between quotiented trees

Pascal Ferraro , Christophe Godin
Algorithmica, 2003, 36, pp.1-39
Journal articles hal-00307409v1
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A distance measure between plant architectures

Pascal Ferraro , Christophe Godin
Annals of Forest Science, 2000, 57 (5), pp.445-461. ⟨10.1051/forest:2000134⟩
Journal articles hal-00883353v1
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A distance measure between plant architectures

Pascal Ferraro , Christophe Godin
Annals of Forest Science, 2000, 57 (5/6), pp.445-461. ⟨10.1051/forest:2000134⟩
Journal articles hal-00827474v2
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Quantitative assessment of automatic reconstructions of branching systems

Frédéric Boudon , Chakkrit Preuksakarn , Pascal Ferraro , Julien Diener , Ekko Nikinmaa
7th International Conference on Functional-Structural Plant Models, Jun 2013, Saariselkä, Finland. pp.64-66
Conference papers hal-00850796v1
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Blast for Audio Sequences Alignment: a Fast Scalable Cover Identification

Benjamin Martin , D.G. Brown , Pierre Hanna , Pascal Ferraro
13th International Society for Music Information Retrieval Conference, 2012, Portugal. p. 529-534
Conference papers hal-01006094v1

Towards an Indexing Method to Speed-Up Music Retrieval

Benjamin Martin , Pierre Hanna , Matthias Robine , Pascal Ferraro
SIGIR 2011, Jul 2011, Beijing, China. pp.1167--1168, ⟨10.1145/2009916.2010102⟩
Conference papers hal-00643562v1

Indexing Musical Pieces Using their Major Repetition

Benjamin Martin , Pierre Hanna , Matthias Robine , Pascal Ferraro
ACM/IEEE Joint Conference on Digital Libraries, Jun 2011, Ottawa, Canada. pp.153--156, ⟨10.1145/1998076.1998106⟩
Conference papers hal-00643560v1

Exemplar-based Imputation of Large Missing Audio Parts Using String Matching on Tonal Features

Benjamin Martin , Pierre Hanna , Vinh-Thong Ta , Myriam Desainte-Catherine , Pascal Ferraro
12th International Society for Music Information Retrieval Conference, Oct 2011, Miami, United States. pp.507--512
Conference papers hal-00643587v1

Combinatorial detection of arrhytmia

Julien Allali , Pavlos Antoniou , Pascal Ferraro , C.S. Iliopoulos , Spiros Michalakopoulos
3rd International Conference on Bio-inspired Systems and Signal Processing, Jan 2010, Valencia, Spain. pp.180--187
Conference papers hal-00523484v1
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Efficient chaining of seeds in ordered trees

Julien Allali , Cédric Chauve , Pascal Ferraro , Anne-Laure Gaillard
21st International Workshop on Combinatorial Algorithms, Jul 2010, London, United Kingdom
Conference papers hal-00490028v1
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Lossy compression of tree architectures

Anne-Laure Gaillard , Pascal Ferraro , Frédéric Boudon , Christophe Godin
6th International Workshop on Functional-Structural Plant Models, 2010, Davis, CA, United States. pp.12-15
Conference papers hal-00831783v1
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Lossy compression of plant architectures

Anne-Laure Gaillard , Pascal Ferraro , Frédéric Boudon , Christophe Godin
6th International Workshop on Functional-Structural Plant Models, Sep 2010, Davis, United States. pp.10--13
Conference papers hal-00490061v1
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Reconstructing Plant Architecture from 3D Laser scanner data

Chakkrit Preuksakarn , Frédéric Boudon , Pascal Ferraro , Jean-Baptiste Durand , Ekko Nikinmaa
6th International Workshop on Functional-Structural Plant Models, Sep 2010, Davis, United States. pp.12--17
Conference papers hal-00490064v1

Accelerating Query-by-Humming on GPU

Pascal Ferraro , Pierre Hanna , Laurent Imbert , Thomas Izard
ISMIR: International Society for Music Information Retrieval Conference, Oct 2009, Kobe, Japan
Conference papers hal-00407932v1

Validation and Decomposition of Partially Occluded Images with Holes

Pavlos Antoniou , Julien Allali , Costas Iliopoulos , Pascal Ferraro
Prague Stringology Conference, Aug 2009, Prague, Czech Republic. pp.129--136
Conference papers hal-00403709v1

Overlay problems for music and combinatorics

Julien Allali , Pavlos Antoniou , Pascal Ferraro , Costas Iliopoulos , Spiros Michalakopoulos
International Conference on Auditory Display, May 2009, Copenhagen, Denmark. pp.138--143
Conference papers hal-00411792v1

Structured Representation of Harmony for Music Retrieval

Matthias Robine , Pierre Hanna , Thomas Rocher , Pascal Ferraro
International Computer Music Conference (ICMC), 2009, Canada
Conference papers hal-00391108v1

Extending Alignment Algorithm for Polyphonic Comparison

Pascal Ferraro , Julien Allali , Pierre Hanna , Matthias Robine
International Computer Music Modeling and Retrieval Conference (CMMR), 2009, Denmark. pp.206-209
Conference papers hal-00391094v1

Visualisation of Musical Structure by Applying Improved Editing Algorithms

Pierre Hanna , Matthias Robine , Pascal Ferraro
International Computer Music Conference (ICMC), 2008, Belfast, Ireland
Conference papers hal-00345346v1
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Improvements of Alignment Algorithms for Polyphonic Music Retrieval

Pierre Hanna , Matthias Robine , Pascal Ferraro , Julien Allali
Computer Music Modeling and Retrieval 2008, 2008, Denmark. pp.244-251
Conference papers hal-00306949v1

Benchmarking RNA secondary structure comparison algorithms

Julien Allali , Yves d'Aubenton-Carafa , Cedric Chauve , Alain Denise , Christine Drevet
JOBIM'08, 2008, Lille, France. pp.67-68
Conference papers hal-00375710v1
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Plant architecture comparison methods: A review of existing algorithms and examples of application

Aïda Ouangraoua , Vincent Segura , Evelyne Costes , Pascal Ferraro
5th International Workshop on Functional-Structural Plant Models, 2007, Napier, New Zealand. pp.47, 1-4
Conference papers hal-00831826v1
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OpenAlea: An open-source platform for the integration of heterogeneous FSPM components

Samuel Dufour-Kowalski , Christophe Pradal , Nicolas Dones , Pierre Barbier de Reuille , Frédéric Boudon
FSPM07 - 5th International Workshop on Functional-Structural Plant Models, Nov 2007, Napier, New Zealand. pp.P36:1-2
Conference papers hal-00831824v1

Optimizations of Local Edition for Evaluating Similarity Between Monophonic Musical Sequences

Pascal Ferraro , Pierre Hanna
8th International Conference on Information Retrieval - Large-Scale Semantic Access to Content (Text, Image, Video and Sound) RIAO07, May 2007, Pittsburg, United States. pp.135 - 142
Conference papers hal-00308267v1
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Adaptation of String Matching Algorithms for Identification of Near-Duplicate Music Documents

Matthias Robine , Pierre Hanna , Pascal Ferraro , Julien Allali
Workshop on Plagiarism Analysis, Authorship Identification, and Near-Duplicate Detection (PAN07), Jul 2007, Amsterdam, Netherlands. pp.37--43
Conference papers hal-00306567v1
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Self-similar Analysis of Plant Architecture Reveals Hierarchical Classes of Meristem States

Christophe Godin , Pascal Ferraro
5th International Workshop on Functional Structural Plant Models, Nov 2007, Napier, New Zealand. pp.481-484
Conference papers hal-00306626v1

Polyphonic Music Retrieval by Local Edition of Quotiented Sequences

Pierre Hanna , Pascal Ferraro
Proceedings of the 5th International Workshop on Content-Based Multimedia Indexing (CBMI), Jun 2007, Bordeaux, France. pp.61-68
Conference papers hal-00308225v1

Music Similarity: Improvements of Edit-based Algorithms by Considering Music Theory

Matthias Robine , Pierre Hanna , Pascal Ferraro
ACM SIGMM International Workshop on Multimedia Information Retrieval (MIR07), Sep 2007, Augsburg, Germany. pp.135--141
Conference papers hal-00306568v1

Local Transpositions in Alignment of Polyphonic Musical Sequences

Julien Allali , Pascal Ferraro , Pierre Hanna , Costas Iliopoulos
Proceedings of the 14th String Processing and Information Retrieval Symposium (SPIRE07), 2007, Chile. pp.26-38
Conference papers hal-00307877v1

Plant architecture comparison methods : a review of existing algorithms and examples of application

Aïda Ouandraoua , Vincent Segura , Evelyne E. Costes , Pascal Ferraro
5. international workshop on functional-structural plant models, Nov 2007, Napier, New Zealand
Conference papers hal-02757128v1

Plant Architecture Comparison Methods: a Review of Existing Algorithms

Aida Ouangraoua , Vincent Segura , Evelyne Costes , Pascal Ferraro
5th International Workshop on Functional Structural Plant Models, Nov 2007, Napier, New Zealand. pp.471--474
Conference papers hal-00306610v1

MIREX Symbolic Music Similarity

Pierre Hanna , Pascal Ferraro
Second annual Music Information Retrieval Evaluation eXchange (MIREX), 2006, United States. pp.90--91
Conference papers hal-00306617v1

PyTreeMatch : a Python Based Software for Comparing RNA Secondary Structure

Ione Ituarte , Aïda Ouangraoua , Pascal Ferraro
JOBIM, 2006, Bordeaux, France. pp.127
Conference papers hal-00307001v1

Comparison of Tree Architecture Using Tree Edit Distances: Application to Two-Year-Old Apple Tree

Vincent Segura , Aida Ouangraoua , Pascal Ferraro , Evelyne Costes
XIII Eucarpia, biometrics in plant breeding section meeting, 2006, Austria. pp.21
Conference papers hal-00306607v1
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A structural method for assessing self-similarity in plants

Pascal Ferraro , Christophe Godin , Przemylaw Prusinkiewicz
Fourth International Workshop on Functional-Structural Trees Models, Jun 2004, Montpellier, France. pp.56--61
Conference papers hal-00307405v1

Local Similarity Between Trees

Pascal Ferraro , Laurent Tichit , Serge Dulucq
Actes des 5ème Journées Ouvertes Biologie Informatique Mathématiques, Jun 2004, Montreal, Canada. pp.19
Conference papers hal-00306628v1

Distance Multi-échelles Entre Structures Secondaires d{ARN}s

Aida Ouangraoua , Pascal Ferraro
5èmes Journées Ouvertes Biologie Informatique Mathématiques, 2004, Montreal, Canada. pp.81
Conference papers hal-00306614v1

Saccharomyces Siliceus

Macha Nikolski , Pascal Ferraro , Pascal Durrens , Michel Aigle
First International Workshop on Systems Biology of Yeast, Nov 2003, United States. pp.électronique
Conference papers hal-00307128v1

EVAT: Environment for Visualization and Analysis of Trees

David Auber , Maylis Delest , Jean-Philippe Domenger , Pascal Ferraro , Robert Strandh
Proceedings of the IEEE Symposium on Information Visualization, Oct 2003, United States. pp.124-125
Conference papers hal-00308270v1

L-systems and {MTG}s: Integrating Simulation and Formal Analysis of Architectural Plant Models

Pascal Ferraro , Przemyslaw Prusinkiewicz , Lars Munderman , Christophe Godin
16th European Simulation Multiconference, Modelling and Simulation, Jun 2002, Germany. pp.418--423
Conference papers hal-00306623v1
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Une méthode structurelle pour évaluer les propriétés d autosimilarité des plantes

Pascal Ferraro , Christophe Godin , Przemyslaw Prusinkiewicz , Lars Mundermann
Self Similarity And Applications Workshop, 2002, Clermont-Ferrand, France
Conference papers hal-00306622v1

L-systems and MTGs: Integration of a simulation system to analyse plant models

Pascal Ferraro , Przemylaw Prusinkiewicz , Lars Munderman , Christophe Godin
Third International Workshop on Functional-Structural Trees Models, 2001, France. pp.11-12
Conference papers hal-00307404v1

An algorithm for comparing unordered tree graphs based on a minimum cost mapping with minimal connectivity

Pascal Ferraro , Christophe Godin
Third Conference on orders, Algorithms and Applications, 1999, France. pp.115-116
Conference papers hal-00307410v1

Un algorithme de comparaison d'arborescences non ordonnées appliqué à la comparaison de la structure topologique des plantes

Pascal Ferraro , Christophe Godin
SFC98 : Société Francophone de classification, 1998, Montpellier, France. pp.77--81
Conference papers hal-00307412v1

A distance measure between plant architectures based on the comparison of their topological structures

Pascal Ferraro , Christophe Godin
Second International Workshop on Functional-Structural Trees Models, 1998, Clermont-Ferrand, France. pp.11-12
Conference papers hal-00307411v1

Modeling Plant Development with L-Systems

Przemyslaw Prusinkiewicz , Mikolaj Cieslak , Pascal P. Ferraro , Jim Hanan
Mathematical Modelling in Plant Biology, Springer International Publishing, pp.139-169, 2018
Book sections hal-01952163v1

Detection of Near-Duplicate Musical Documents from a Multi-Level Comparison of Tonal Information

Pascal Ferraro , Matthias Robine , Julien Allali , Pierre Hanna , Rocher Thomas
Information Extraction from the Internet, iconcept press, pp.129--143, 2011
Book sections hal-00643529v1

Polyphonic alignment algorithms for symbolic music retrieval

Julien Allali , Pascal Ferraro , Pierre Hanna , Matthias Robine
Ystad, S. and Aramaki, M. and Kronland-Martinet, R. and Jensen, K. Auditory Display, Springer Verlag Berlin, pp.466--482, 2010, LNCS, ⟨10.1007/978-3-642-12439-6_24⟩
Book sections hal-00523486v1