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Paul-Henry Cournède

178
Documents

Presentation

2009 HDR Montpellier University 2001 PhD in Applied Mathematics, Ecole Centrale Paris 1997 Ingénieur Ecole Centrale Paris 1997 Certificate of Advanced Studies in Mathematics, Part III, Cambridge University 1992-1994 BJ

Publications

Better than RECIST and Faster than iRECIST: Defining the Immunotherapy Progression Decision Score to Better Manage Progressive Tumors on Immunotherapy

Younes Belkouchi , Hugues Talbot , Nathalie Lassau , Littisha Lawrance , Siham Farhane
Clinical Cancer Research, 2023, 29 (8), pp.1528-1534. ⟨10.1158/1078-0432.CCR-22-0890⟩
Journal articles hal-04396436v1

Integrative Pan-Cancer Genomic and Transcriptomic Analyses of Refractory Metastatic Cancer

Yoann Pradat , J. Viot , Andrey A. Yurchenko , Konstantin Vladimirovich Gunbin , L. Cerbone
Cancer discovery, 2023, 13 (5), pp.1116-1143. ⟨10.1158/2159-8290.CD-22-0966⟩
Journal articles hal-04122846v1
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CustOmics: A versatile deep-learning based strategy for multi-omics integration

Hakim Benkirane , Yoann Pradat , Stefan Michiels , P. H. Cournède
PLoS Computational Biology, 2023, 19 (3), ⟨10.1371/journal.pcbi.1010921⟩
Journal articles hal-04069315v1
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New calibration setup for quantitative DCE‐US imaging protocol: Toward standardization

Isaline Hoferer , Laurene Jourdain , Charly Girot , Baya Benatsou , Ingrid Leguerney
Medical Physics, 2023, 50 (9), pp.5541-5552. ⟨10.1002/mp.16362⟩
Journal articles hal-04261753v1
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Optimizing IFN Alpha Therapy against Myeloproliferative Neoplasms

Gurvan Hermange , Paul-Henry Cournède , Isabelle Plo
Journal of Pharmacology and Experimental Therapeutics, 2023, 387 (1), pp.31-43. ⟨10.1124/jpet.122.001561⟩
Journal articles hal-04308358v1
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A biology-driven deep generative model for cell-type annotation in cytometry

Quentin Blampey , Nadège Bercovici , Charles-Antoine Dutertre , Isabelle Pic , Joana Mourato Ribeiro
Briefings in Bioinformatics, 2023, 24 (5), ⟨10.1093/bib/bbad260⟩
Journal articles hal-04287005v1

Moving toward precision oncology centers V2.0

S. Dogan , Paul-Henry P.-H. Cournède , E. Solary , J.-M. Heard , M. Aldea
Annals of Oncology, 2023, 34 (12), pp.1088-1089. ⟨10.1016/j.annonc.2023.09.3115⟩
Journal articles hal-04372621v1
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Synergic prognostic value of 3D CT scan subcutaneous fat and muscle masses for immunotherapy-treated cancer

Pierre Decazes , Samy Ammari , Younes Belkouchi , Léo Mottay , Littisha Lawrance
Journal for Immunotherapy of Cancer, 2023, 11 (9), pp.e007315. ⟨10.1136/jitc-2023-007315⟩
Journal articles hal-04287256v1

BR55 Ultrasound Molecular Imaging of Clear Cell Renal Cell Carcinoma Reflects Tumor Vascular Expression of VEGFR-2 in a Patient-Derived Xenograft Model

Jean Courcier , Ingrid Leguerney , Baya Benatsou , Sibylle Pochon , Isabelle Tardy
International Journal of Molecular Sciences, 2023, 24 (22), pp.16211. ⟨10.3390/ijms242216211⟩
Journal articles hal-04372573v1
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Machine learning identifies a profile of inadequate responder to methotrexate in rheumatoid arthritis

Julien Duquesne , Vincent Bouget , Paul-Henry Cournede , Bruno Fautrel , Francis Guillemin
Rheumatology, 2023, 62 (7), pp.2402-2409. ⟨10.1093/rheumatology/keac645⟩
Journal articles hal-03986625v1
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Predicting immunotherapy outcomes in patients with MSI tumors using NLR and CT global tumor volume

Younes Belkouchi , Laetitia Nebot-Bral , Littisha Lawrance , Michele Kind , Clémence David
Frontiers in Oncology, 2022, 12, pp.982790. ⟨10.3389/fonc.2022.982790⟩
Journal articles hal-04266174v1
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Machine Learning Predicts Response to TNF Inhibitors in Rheumatoid Arthritis: Results on the ESPOIR and ABIRISK Cohorts

Vincent Bouget , Julien Duquesne , Signe Hassler , Paul-Henry P.-H. Cournède , Bruno Fautrel
RMD Open : Rheumatic & Musculoskeletal Diseases, 2022, 8 (2), pp.e002442. ⟨10.1136/rmdopen-2022-002442⟩
Journal articles hal-03979132v1
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Modélisation mathématique de l'hématopoïèse et des hémopathies : développement, dynamique et traitement

Gurvan Hermange , Paul-Henry P.-H. Cournède , Isabelle Plo
Hématologie, 2022, 28 (4), pp.183-200. ⟨10.1684/hma.2022.1762⟩
Journal articles hal-04134893v1
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Inferring the initiation and development of myeloproliferative neoplasms

Gurvan Hermange , Alicia Rakotonirainy , Mahmoud Bentriou , Amandine Tisserand , Mira El-Khoury
Proceedings of the National Academy of Sciences of the United States of America, 2022, 119 (37), ⟨10.1073/pnas.2120374119⟩
Journal articles hal-03844872v1
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Prediction of Early Response to Immunotherapy: DCE-US as a New Biomarker

Raphael Naccache , Younes Belkouchi , Littisha Lawrance , Baya Benatsou , Joya Hadchiti
Cancers, 2022, 14 (5), pp.1337. ⟨10.3390/cancers14051337⟩
Journal articles hal-03792594v1

Better than RECIST and faster than iRECIST: Defining the immunotherapy progression decision score to better manage progressive tumors on immunotherapy

Younes Belkouchi , Hugues Talbot , Nathalie Lassau , L. Lawrance , S. Farhane
Annals of Oncology, 2022, 33, pp.S595-S596. ⟨10.1016/j.annonc.2022.07.159⟩
Journal articles hal-03940635v1
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Full Bayesian inference in hidden Markov models of plant growth

Gautier Viaud , Yuting Chen , Paul-Henry P.-H. Cournède
Annals of Applied Statistics, 2022, 16 (4), ⟨10.1214/21-AOAS1594⟩
Journal articles hal-04292956v1

Automaton-ABC: A statistical method to estimate the probability of spatio-temporal properties for parametric Markov population models

Mahmoud Bentriou , Paolo Ballarini , Paul-Henry Cournède
Theoretical Computer Science, 2021, 893, pp.191-219. ⟨10.1016/j.tcs.2021.09.039⟩
Journal articles hal-04148855v1

Bayesian Estimation for the GreenLab Plant Growth Model with Deterministic Organogenesis

D. Logothetis , S. Malefaki , S. Trevezas , Paul-Henry P.-H. Cournède
Journal of Agricultural, Biological, and Environmental Statistics, 2021, 27 (1), pp.63-87. ⟨10.1007/s13253-021-00468-w⟩
Journal articles hal-04372549v1
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Inferring the dynamic of mutated hematopoietic stem and progenitor cells induced by IFNα in myeloproliferative neoplasms

Matthieu Mosca , Gurvan Hermange , Amandine Tisserand , Robert John Noble , Christophe Marzac
Journal articles hal-03452002v1

Optimal control of non-smooth greenhouse models

A. Della Noce , M. Carrier , Paul-Henry P.-H. Cournède
Acta Horticulturae, 2020, 1296, pp.125-132. ⟨10.17660/ActaHortic.2020.1296.17⟩
Journal articles hal-03128485v1

Prediction of the molecular status in non-small cell lung cancer based on metastatic pattern: A free webtool powered by artificial intelligence.

Benjamin Besse , Alison Dormieux , Laura Mezquita , Renaud Monnet , Melodie Tazdait
Journal of Clinical Oncology, 2020, 38 (15_suppl), pp.9535-9535. ⟨10.1200/JCO.2020.38.15_suppl.9535⟩
Journal articles hal-03128125v1

Ultrasound Molecular Imaging of Renal Cell Carcinoma: VEGFR targeted therapy monitored with VEGFR1 and FSHR targeted microbubbles

Alexandre Ingels , Ingrid Leguerney , Paul-Henry P.-H. Cournède , Jacques Irani , Sophie Ferlicot
Scientific Reports, 2020, 10 (1), ⟨10.1038/s41598-020-64433-2⟩
Journal articles hal-03128255v1

Comprehensive landscape of immune-checkpoints uncovered in clear cell renal cell carcinoma reveals new and emerging therapeutic targets.

Diana Tronik-Le Roux , Mathilde Sautreuil , Mahmoud Bentriou , Jérôme Verine , Maria Belén Palma
Cancer Immunology, Immunotherapy, 2020, 69 (7), pp.1237-1252. ⟨10.1007/s00262-020-02530-x⟩
Journal articles hal-02879515v1

Dynamic monitoring of software use with recurrent neural networks

Chloé Adam , Antoine Aliotti , Fragkiskos Malliaros , Paul-Henry Cournède
Data and Knowledge Engineering, 2020, 125, pp.101781. ⟨10.1016/j.datak.2019.101781⟩
Journal articles hal-02520120v1

Association of metastatic pattern and molecular status in stage IV non-small cell lung cancer adenocarcinoma

Alison Dormieux , Laura Mezquita , Paul-Henry P.-H. Cournède , Jordi Remon , Melodie Tazdait
European Radiology, 2020, 30 (9), pp.5021-5028. ⟨10.1007/s00330-020-06784-y⟩
Journal articles hal-03127555v1
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Asymptotic distribution of likelihood ratio test statistics for variance components in nonlinear mixed effects models

Charlotte Baey , Paul-Henry P.-H. Cournède , Estelle Kuhn
Computational Statistics and Data Analysis, 2019, 135, pp.107-122. ⟨10.1016/j.csda.2019.01.014⟩
Journal articles hal-02367731v1

Association of metastatic pattern and molecular status in metastatic lung non-small cell lung cancer adenocarcinomas

A. Dormieux , L. Mezquita , Paul-Henry P.-H. Cournède , L. Lacroix , Emy Rouleau
Annals of Oncology, 2019, 30, pp.vii14. ⟨10.1093/annonc/mdz413.049⟩
Journal articles hal-03128413v1

Insights of Global Sensitivity Analysis in Biological Models with Dependent Parameters

Julien Sainte-Marie , Paul-Henry P.-H. Cournède
Journal of Agricultural, Biological, and Environmental Statistics, 2019, 24 (1), pp.92-111. ⟨10.1007/s13253-018-00343-1⟩
Journal articles hal-02367752v1

Échographie moléculaire dans le cancer du rein : modèle pré-clinique de suivi des traitements anti-angiogéniques à partir de microbulles couplées au VEGFR1 et FSHR

I. Alexandre , I. Leguerney , Paul-Henry P.-H. Cournède , J. Irani , S. Ferlicot
Progrès en Urologie, 2019, 29 (13), pp.647. ⟨10.1016/j.purol.2019.08.054⟩
Journal articles hal-03128465v1

A new methodology based on sensitivity analysis to simplify the recalibration of functional–structural plant models in new conditions

Amélie Mathieu , Tiphaine Vidal , Alexandra Jullien , Qiongli Wu , Camille Chambon
Annals of Botany, 2018, 127 (3), pp.397-408. ⟨10.1093/aob/mcy080⟩
Journal articles hal-01824176v1

Mixed-Effects Estimation in Dynamic Models of Plant Growth for the Assessment of Inter-individual Variability

Charlotte Baey , Amélie Mathieu , Alexandra Jullien , Samis Trevezas , Paul-Henry P.-H. Cournède
Journal of Agricultural, Biological, and Environmental Statistics, 2018, 23 (2), pp.208-232. ⟨10.1007/s13253-017-0307-4⟩
Journal articles hal-01766698v1

Model-Driven and Data-Driven Approaches for Crop Yield Prediction: Analysis and Comparison

Xiangtuo Chen , Paul-Henry P.-H. Cournède
International Journal of Mathematical and Computational Sciences, 2017, 11 (7), pp.334-342
Journal articles hal-02527764v1
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Indices de Sobol généralisés aux variables dépendantes : tests de performance de l’algorithme HOGS couplé à plusieurs estimateurs paramétriques

Julien Sainte-Marie , Gautier Viaud , Paul-Henry Cournède
Journal de la Société Française de Statistique, 2017, 158 (1), pp.68-89
Journal articles hal-01630985v1

Reconstructing minimal length tree branch systems from leaf positions

Paul-Henry P.-H. Cournède , Robert Beyer , Dominik Bayer , Hans Pretzsch
Ecological Informatics, 2017, 42, pp.61 - 66. ⟨10.1016/j.ecoinf.2017.09.010⟩
Journal articles hal-01630979v1
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Leaf segmentation and tracking in arabidopsis thaliana combined to an organ-scale plant model for genotypic differentiation

Gautier Viaud , Olivier Loudet , Paul-Henry Cournede
Frontiers in Plant Science, 2017, 7, pp.1-14. ⟨10.3389/fpls.2016.02057⟩
Journal articles hal-01602596v1

Leaf density-based modelling of phototropic crown dynamics and long-term predictive application to European beech

Robert Beyer , Veronique Letort , Dominik Bayer , Hans Pretzsch , Paul-Henry Cournède
Ecological Modelling, 2017, 347, pp.63 - 71. ⟨10.1016/j.ecolmodel.2016.12.012⟩
Journal articles hal-01630989v1

Validation of a functional-structural tree model using terrestrial Lidar data

Robert Beyer , Dominik Bayer , Veronique Letort , Hans Pretzsch , Paul-Henry Cournède
Ecological Modelling, 2017, 357, pp.55 - 57. ⟨10.1016/j.ecolmodel.2017.02.018⟩
Journal articles hal-01630981v1
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Bayesian parameter estimation for the Wnt pathway: an infinite mixture models approach

Konstantinos Koutroumpas , Paolo Ballarini , Irene Votsi , Paul-Henry Cournède
Bioinformatics, 2016, 32 (17), pp.i781 - i789. ⟨10.1093/bioinformatics/btw471⟩
Journal articles hal-01817488v1

Turgidity-dependent petiole flexibility enables efficient water use by a tree subjected to water stress

David Gonzalez-Rodriguez , Paul-Henry Cournède , Emmanuel de Langre
Journal of Theoretical Biology, 2016, 398, pp.20-31. ⟨10.1016/j.jtbi.2016.03.011⟩
Journal articles hal-01323343v1
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Learning from User Workflows for the Characterization and Prediction of Software Crashes

Chloé Adam , Antoine Aliotti , Paul-Henry Cournède
2016 IEEE 16th International Conference on Data Mining Workshops (ICDMW), 2016, pp.1023 - 1030. ⟨10.1109/ICDMW.2016.0148⟩
Journal articles hal-01616232v1
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A Regularized Particle Filter EM Algorithm Based on Gaussian Randomization with an Application to Plant Growth Modeling

Yuting Chen , Samis Trevezas , Paul-Henry Cournède
Methodology and Computing in Applied Probability, 2015, 17 (4), pp.847-870. ⟨10.1007/s11009-015-9440-0⟩
Journal articles hal-00997732v1
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A nonlinear mixed effects model of plant growth and estimation via stochastic variants of the EM algorithm.

Charlotte Baey , Samis Trevezas , Paul-Henry Cournède
Communications in Statistics - Theory and Methods, 2015, pp.00. ⟨10.1080/03610926.2014.930909⟩
Journal articles hal-01068327v1

Modeling spatial competition for light in plant populations with the porous medium equation

Robert Beyer , Octave Etard , Paul-Henry P.-H. Cournède , Pascal Laurent-Gengoux
Journal of Mathematical Biology, 2015, 70 (3), pp.533-547. ⟨10.1007/s00285-014-0763-1⟩
Journal articles hal-02404088v1

Parameter estimation via stochastic variants of the ECM algorithm with applications to plant growth modeling

Samis Trevezas , Sonia Malefaki , Paul-Henry P.-H. Cournède
Computational Statistics and Data Analysis, 2014, 78, pp.82-99. ⟨10.1016/j.csda.2014.04.004⟩
Journal articles hal-02527966v1
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Model-Based Analysis-Synthesis for Realistic Tree Reconstruction and Growth Simulation

Corina Iovan , Paul-Henry Cournède , Thomas Guyard , Benoît Bayol , Dider Boldo
IEEE Transactions on Geoscience and Remote Sensing, 2014, 52 (2), pp.1438-1450. ⟨10.1109/TGRS.2013.2251467⟩
Journal articles hal-00826023v1

A comprehensive methodology of global sensitivity analysis for complex mechanistic models with an application to plant growth

Qiongli Wu , Paul-Henry Cournède
Ecological Complexity, 2014, 20, pp.219-232. ⟨10.1016/j.ecocom.2013.12.005⟩
Journal articles hal-02527976v1
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Sunlab: a Functional-Structural Model for Genotypic and Phenotypic Characterization of the Sunflower Crop

Fenni Kang , Paul-Henry Cournede , Jeremie Lecoeur , Véronique Letort
Ecological Modelling, 2014, 290, pp.21-33. ⟨10.1016/j.ecolmodel.2014.02.006⟩
Journal articles hal-01272125v1
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Parametrization of five classical plant growth models applied to sugar beet and comparison of their predictive capacities on root yield and total biomass

Charlotte Baey , Anne Didier , Sébastien Lemaire , Fabienne Maupas , Paul-Henry Cournède
Ecological Modelling, 2014, 290, pp.11-20. ⟨10.1016/j.ecolmodel.2013.11.003⟩
Journal articles hal-00919753v1

A Symbolic Method to Analyse Patterns in Plant Structure

Cedric Loi , Paul-Henry P.-H. Cournède , Jean Françon
Combinatorics, Probability and Computing, 2014, 23 (5), pp.842-860. ⟨10.1017/S0963548314000108⟩
Journal articles hal-02527843v1
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Data assimilation to reduce uncertainty of crop model prediction with convolution particle filtering

Yuting Chen , Paul-Henry Cournède
Ecological Modelling, 2014, in press. ⟨10.1016/j.ecolmodel.2014.01.030⟩
Journal articles hal-00997728v1
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Modeling tree crown dynamics with 3D partial differential equations

Robert Beyer , Véronique Letort , Paul-Henry Cournède
Frontiers in Plant Science, 2014, 5, pp.329. ⟨10.3389/fpls.2014.00329⟩
Journal articles hal-01272213v1
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Application of a probabilistic model for analysing the abortion of seeds and pods in winter oilseed rape (Brassica napus)

Xiu Juan Wang , Amélie Mathieu , Paul-Henry P.-H. Cournède , B G Zhang , Philippe de Reffye
Annals of Applied Biology, 2014, 165 (3), pp.414- 428. ⟨10.1111/aab.12152⟩
Journal articles hal-01510245v1
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Development and Evaluation of Plant Growth Models: Methodology and Implementation in the PYGMALION platform

Paul-Henry Cournède , Yuting Chen , Qiongli Wu , Charlotte Baey , Benoît Bayol
Mathematical Modelling of Natural Phenomena, 2013, 8 (4), pp.112-130. ⟨10.1051/mmnp/20138407⟩
Journal articles hal-00860902v1
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A sequential Monte Carlo approach for MLE in a plant growth model

Samis Trevezas , Paul-Henry Cournède
Journal of Agricultural, Biological, and Environmental Statistics, 2013, pp.online first. ⟨10.1007/s13253-013-0134-1⟩
Journal articles hal-00796154v1
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Modelling the interindividual variability of organogenesis in sugar beet populations using a hierarchical segmented model

Charlotte Baey , Anne Didier , Lemaire Sébastien , Fabienne Maupas , Paul-Henry Cournède
Ecological Modelling, 2013, 263, pp.56-63. ⟨10.1016/j.ecolmodel.2013.04.013⟩
Journal articles hal-00819919v1
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Oscillations in Functional Structural Plant Growth Models

Amélie Mathieu , Veronique Letort , Paul-Henry Cournède , Baogui Zhang , Patrick Heuret
Mathematical Modelling of Natural Phenomena, 2012, 7 (6), pp.47-66. ⟨10.1051/mmnp/20127603⟩
Journal articles hal-00780592v1

Characterization of the effects of inter-tree competition on source-sink balance in Chinese pine trees with the GreenLab model

Hong Guo , Xiangdong Lei , Paul-Henry Cournède , Veronique Letort
Trees - Structure and Function, 2012, 26, pp.1057-1067. ⟨10.1007/s00468-012-0683-x⟩
Journal articles hal-00780354v1

Parallel Graph Grammars with Instantiation Rules Allow Efficient Structural Factorization of Virtual Vegetation

Katarina Smolenova , Winfried Kurth , Paul-Henry Cournède
Electronic Communications of the EASST, 2012, pp.114-128. ⟨10.14279/tuj.eceasst.61.830.825⟩
Journal articles hal-00872370v1

An optimal control methodology for plant growth--Case study of a water supply problem of sunflower

Lin Wu , François-Xavier Le Dimet , Philippe de Reffye , Bao-Gang Hu , Paul-Henry Cournède
Mathematics and Computers in Simulation, 2012, 82 (5), pp.909-923. ⟨10.1016/j.matcom.2011.12.007⟩
Journal articles hal-00705066v1

An efficient computational method for global sensitivity analysis and its application to tree growth modelling

Qiongli Wu , Paul-Henry Cournède , Amélie Mathieu
Reliability Engineering and System Safety, 2012, 107, pp.35-43. ⟨10.1016/j.ress.2011.07.001⟩
Journal articles hal-00639539v1

NEMA, a functional-structural model of nitrogen economy within wheat culms after flowering. I.Model description

Jessica Bertheloot , Paul-Henry Cournède , Bruno Andrieu
Annals of Botany, 2011, 108 (6), pp.1085-1096. ⟨10.1093/aob/mcr119⟩
Journal articles hal-01019789v1

Variability and regulation of the number of ovules, seeds and pods according to assimilate availability in winter oilseed rape (Brassica napus L.).

Xiujuan X. Wang , Amélie A. Mathieu , Paul-Henry P.-H. Cournède , Jean Michel J. M. Allirand , Alexandra A. Jullien
Field Crops Research, 2011, 122 (1), pp.60-69. ⟨10.1016/j.fcr.2011.02.008⟩
Journal articles hal-01000492v1

NEMA, a functional-structural model of nitrogen economy within wheat culms after flowering. II. Evaluation and sensitivity analysis

Jessica Bertheloot , Qiongli Wu , Paul-Henry Cournède , Bruno Andrieu
Annals of Botany, 2011, 108 (6), pp.1097-1109. ⟨10.1093/aob/mcr125⟩
Journal articles hal-00826101v1

Characterization of the interactions between architecture and source-sink relationships in winter oilseed rape (Brassica napus) using the GreenLab model

Alexandra Jullien , Amélie Mathieu , Jean-Michel Allirand , Amélie Pinet , Philippe de Reffye
Annals of Botany, 2011, 107 (5), pp.765-779. ⟨10.1093/aob/mcq205⟩
Journal articles halsde-00613649v1

Simulation of fruit-set and trophic competition and optimization of yield advantages in six Capsicum cultivars using functional-structural plant modelling

Yuntao Ma , A. M. Wubs , E. Heuvelink , Amélie Mathieu , J. Y. Zhu
Annals of Botany, 2011, 107 (5), pp.793-803. ⟨10.1093/aob/mcq223⟩
Journal articles halsde-00613645v1
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Some Parameter Estimation Issues in Functional-Structural Plant Modelling

Paul-Henry Cournède , Veronique Letort , Amélie Mathieu , Meng Zhen Kang , Sébastien Lemaire
Mathematical Modelling of Natural Phenomena, 2011, 6 (2), pp.133-159. ⟨10.1051/mmnp/20116205⟩
Journal articles hal-00631509v1

Comparison of three approaches to model grapevine organogenesis in conditions of fluctuating temperature, solar radiation and soil water content

Benoît Pallas , Cedric Loi , Angélique Christophe , Paul-Henry Cournède , Jérémy Lecoeur
Annals of Botany, 2010, 107 (5), pp.Non connues. ⟨10.1093/aob/mcq173⟩
Journal articles inria-00546250v1
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Optimization of source-sink dynamics in plant growth for ideotype breeding: a case study on maize

Rui Qi , Yuntao Ma , Baogang Hu , Philippe de Reffye , Paul-Henry Cournède
Computers and Electronics in Agriculture, 2010, 71 (1), pp.96-105. ⟨10.1016/j.compag.2009.12.008⟩
Journal articles hal-00493526v3

Using a mathematical model to evaluate the trophic and non-trophic determinants of axis development in grapevine

Benoit Pallas , Angélique Christophe , Paul-Henry Cournède , Jérémie Lecoeur
Functional Plant Biology, 2009, 36 (2), pp.156-170. ⟨10.1071/fp08178⟩
Journal articles hal-02666609v1

Une histoire de la modélisation des plantes

Philippe de Reffye , Marc Jaeger , Paul-Henry Cournède
Interstices, 2009
Journal articles hal-01350407v1
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Application of the GreenLab model to simulate and optimize wood production and tree stability: a theoretical study

Rui Qi , Véronique Letort , M. Z. Kang , Paul-Henry Cournède , Philippe de Reffye
Silva Fennica, 2009, 43 (3), pp.465-487
Journal articles halsde-00436297v1

A dynamic model of plant growth with interactions between development and functional mechanisms to study plant structural plasticity related to trophic competition.

A. Mathieu , Paul-Henry Cournède , Véronique Letort , Daniel Barthélémy , P. de Reffye
Annals of Botany, 2009, 103 (8), pp.1173-1186. ⟨10.1093/aob/mcp054⟩
Journal articles halsde-00418643v1

Using a mathematical model to evaluate the trophic and non-trophic determinants of axis development in grapevine (Vitis vinifera L.)

Benoit Pallas , Angélique Christophe , Paul-Henry Cournède , Jérémie Lecoeur
Functional Plant Biology, 2009, 36, pp.156-170
Journal articles hal-00872383v1

A model-based analysis of the dynamics of carbon balance at the whole-plant level in Arabidopsis thaliana

Angélique Christophe , Veronique Letort , Irène Hummel , Paul-Henry Cournède , P. de Reffye
Functional Plant Biology, 2008, 35, pp.1147-1162. ⟨10.1071/FP08099⟩
Journal articles hal-00652522v1

Quantitative genetics and functional-structural plant growth models : Simulation of quantitative trait loci detection for model parameters and application to potential yield optimization

Véronique Letort , Paul Mahe , Paul-Henry Cournède , Philippe de Reffye , Brigitte Courtois
Annals of Botany, 2008, 101 (8), pp.1243-1254. ⟨10.1093/aob/mcm197⟩
Journal articles halsde-00288538v1

Parameter optimization and field validation of the functional-structural model GREENLAB for Maize at different population densities

Yuntao Ma , Wen Meiping , Yan Guo , Baoguo Li , Paul-Henry Cournède
Annals of Botany, 2008, 101 (8), pp.1185-1194. ⟨10.1093/aob/mcm233⟩
Journal articles halsde-00290415v1

Structural Identifiability of Generalized Constraint Neural Network Models for Nonlinear Regression

Shuang-Hong Yang , Bao-Gang Hu , Paul-Henry Cournède
Neurocomputing, 2008, 72 (1-3), pp.392-400. ⟨10.1016/j.neucom.2007.12.013⟩
Journal articles hal-00872379v1
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Parametric identification of a functional-structural tree growth model and application to beech trees (Fagus sylvatica)

Veronique Letort , Paul-Henry Cournède , Amélie Mathieu , Philippe de Reffye , Thiéry Constant
Functional Plant Biology, 2008, 35, pp.951-963. ⟨10.1071/fp08065⟩
Journal articles inria-00529461v1

Rhythms and alternating patterns in plants as emergent properties of a model of interaction between development and functioning

Amélie Mathieu , Daniel Barthélémy , Paul-Henry Cournède , Philippe de Reffye
Annals of Botany, 2008, 101 (8), pp.1233-1242. ⟨10.1093/aob/mcm171⟩
Journal articles halsde-00288730v1

Computing competition for light in the GREENLAB model of plant growth: a contribution to the study of the effects of density on resource acquisition and architectural development.

Paul-Henry Cournède , Amélie Mathieu , François Houllier , Daniel Barthélémy , Philippe de Reffye
Annals of Botany, 2008, 101 (8), pp.1207-1219. ⟨10.1093/aob/mcm272⟩
Journal articles halsde-00291875v1

Analytical study of a stochastic plant growth model: application to the GreenLab model

M. Z. Kang , Paul-Henry Cournède , Philippe de Reffye , Daniel Auclair , Bao-Gang Hu
Mathematics and Computers in Simulation, 2008, 78 (1), pp.57-78. ⟨10.1016/j.matcom.2007.06.003⟩
Journal articles halsde-00306691v1
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Simulation and Visualisation of Functional Landscapes: Effects of the Water Resource Competition between Plants

Vincent Le Chevalier , Marc Jaeger , Xing Mei , Paul-Henry Cournède
Journal of Computer Science and Technology, 2007, 22 (6), pp.835-845. ⟨10.1007/s11390-007-9105-8⟩
Journal articles inria-00547631v1
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Structural Factorization of Plants to Compute their Functional and Architectural Growth

Paul-Henry Cournède , M.Z. Kang , A. Mathieu , Jean-François Barczi , H.P. Yan
SIMULATION: Transactions of The Society for Modeling and Simulation International, 2006, Simulation,Transactions of the society for modelling and simulation international, 82 (7), pp.427-438. ⟨10.1177/0037549706069341⟩
Journal articles inria-00121231v1

Positivity statements for a Mixed-Element-Volume scheme on fixed and moving grids

Bruno Koobus , Paul-Henry Cournède , Alain Dervieux
Revue Européenne de Mécanique Numérique/European Journal of Computational Mechanics, 2006, 15 (7-8), pp.767-798. ⟨10.3166/remn.15.767-798⟩
Journal articles hal-00372831v1
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A dynamical model of plant growth with full retroaction between organogenesis and photosynthesis

Amélie Rostand-Mathieu , Paul-Henry Cournède , Philippe de Reffye
Revue Africaine de Recherche en Informatique et Mathématiques Appliquées, 2006, 7ème Colloque Africain sur la Recherche en Informatique (CARI'04), Volume 4, 2006, pp.101-107. ⟨10.46298/arima.1844⟩
Journal articles inria-00122478v2
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A Water Supply Optimization Problem for Plant Growth Based on GreenLab Model

Lin Wu , Philippe de Reffye , Bao-Gang Hu , François-Xavier Le Dimet , Paul-Henry Cournède
Revue Africaine de Recherche en Informatique et Mathématiques Appliquées, 2005, Volume 3, Special Issue CARI'04, november 2005, pp.197-207. ⟨10.46298/arima.1836⟩
Journal articles hal-01261708v1

GreenLab: A Dynamical Model of Plant Growth for Environmental Applications

Paul-Henry Cournède , Philippe de Reffye
ERCIM News, 2005, Special : Environmental Modelling, 61, pp.39-40
Journal articles inria-00121232v1
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Structured State Space Models for Multiple Instance Learning in Digital Pathology

Leo Fillioux , Joseph Boyd , Maria Vakalopoulou , Paul-Henry P.-H. Cournède , Stergios Christodoulidis
MICCAI 2023, Oct 2023, Vancouver, Canada. ⟨10.1007/978-3-031-43907-0_57⟩
Conference papers hal-04331431v1
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Hyper-AdaC: Adaptive clustering-based hypergraph representation of whole slide images for survival analysis

Hakim Benkirane , Maria Vakalopoulou , Stergios Christodoulidis , Ingrid-Judith Garberis , Stefan Michiels
ML4H 2022 - Machine Learning for Health, Nov 2022, New Orelans, France. pp.405-418
Conference papers hal-04330534v1

On the Use of Neural Networks with Censored Time-to-Event Data

Elvire Roblin , Paul-Henry P.-H. Cournède , Stefan Michiels
International Symposium on Mathematical and Computational Oncology - ISMCO 2020, Oct 2020, Paris, France. pp.56-67, ⟨10.1007/978-3-030-64511-3_6⟩
Conference papers hal-03127430v1
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Simulation de la densité limite de champ moyen pour des populations hétérogènes avec interactions

Antonin Della Della Noce , Amélie Mathieu , Paul-Henry P.-H. Cournède
22ème Rencontre du Non-Linéaire, Mar 2019, Paris, France
Conference papers hal-02425831v1

Assimilation de données par filtrage particulaire régularisé dans un modèle d'épidémiologie

Mahmoud Bentriou , Stefanella Boatto , Gautier Viaud , Paul-Henry P.-H. Cournède
50èmes journées de Statistique de a SFdS, May 2018, Palaiseau, France
Conference papers hal-02860793v1

Modèles de population avec interactions : de la limite de champ moyen à l'approximation de champ moyen.

Antonin Della Della Noce , Amelie Mathieu , Paul-Henry P.-H. Cournède
50èmes journées de Statistique de la SFdS, May 2018, Palaiseau, France
Conference papers hal-02860994v1

Crop recognition from sequential sentinel-1 images with lstm recurrent networks

Wendy Hammache , Théophile Lohier , Paul-Henry P.-H. Cournède
6th International Symposium on Plant Growth Modeling, Simulation, Visualization and Applications (PMA), Nov 2018, Hefei, China
Conference papers hal-02861019v1

Application of Weighted Regression for the Prediction of Soft Wheat Production in France

Xiangtuo Chen , Benoît Bayol , Paul-Henry Cournède
6th International Symposium on Plant Growth Modeling, Simulation, Visualization and Applications (PMA) 2018, Nov 2018, Hefei, China. pp.141-146, ⟨10.1109/pma.2018.8611566⟩
Conference papers hal-02860799v1

Impact of geometrical traits on light interception in conifers analysis using an FSPM for Scots pine

Katarina Streit , Michael Henke , Benoit Bayol , Paul-Henry P.-H. Cournède , Risto Sievaenen
IEEE International Conference on Functional-Structural Plant Growth Modeling, Simulation, Visualization and Applications (FSPMA), Nov 2016, Qingdao, China. ⟨10.1109/FSPMA.2016.7818307⟩
Conference papers hal-02402783v1
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A data augmentation scheme embedding a sequential Monte Carlo method for Bayesian parameter inference in state space models

Irene Votsi , Paul-Henry Cournède
48èmes Journées de Statistique de la SFdS, May 2016, Montpellier, France
Conference papers hal-01355334v1

Sensitivity analysis to help individual plant model parameterization for winter oilseed rape

Amélie Mathieu , Tiphaine Vidal , Alexandra Jullien , Qiongli Wu , Paul-Henry P.-H. Cournède
International Conference on Functional-Structural Plant Growth Modeling, Simulation, Visualization and Applications (FSPMA 2016), FSPMA 2016., Nov 2016, Qingdao, China. ⟨10.1109/fspma.2016.7818299⟩
Conference papers hal-01566311v1

Modeling soil temperature to predict emergence

Etienne Claverie , Jérémie J. Lecoeur , Veronique Letort , Paul-Henry P.-H. Cournède
2016 IEEE International Conference on Functional-Structural Plant Growth Modeling, Simulation, Visualization and Applications (FSPMA), Nov 2016, Qingdao, China. ⟨10.1109/FSPMA.2016.7818285⟩
Conference papers hal-01823953v1
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Modeling the inter-individual variability of single-stemmed plant development

Antonin Della Della Noce , Véronique Letort , Amandine Hansart , Charlotte Baey , Gautier Viaud
International Conference on Functional-Structural Plant Growth Modeling, Simulation, Visualization and Applications (FSPMA 2016), Nov 2016, Qingdao, China. ⟨10.1109/fspma.2016.7818287⟩
Conference papers hal-01490367v1

WIP - Promoting good modeling practice with a domain-specific language and statistical algorithms designed for parallel computing

Benoît Bayol , Yuting Chen , Charlotte Baey , Gautier Viaud , Paul-Henry P.-H. Cournède
DEVS '15: Proceedings of the Symposium on Theory of Modeling & Simulation: DEVS Integrative M&S Symposium, Apr 2015, San Diego, United States
Conference papers hal-02777331v1
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A Comparison of a Generic MCMC-Based Algorithm for Bayesian Estimation in C++, R and Julia. Application to Plant Growth Modeling

Gautier Viaud , Yuting Chen , Benoît Bayol , Paul-Henry Cournède
2015 Spring Simulation Multi-Conference The Society for Modeling & Simulation International, Apr 2015, Alexandria, United States
Conference papers hal-01250999v1
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Towards an EDSL to enhance good modelling practice for non-linear stochastic discrete dynamical models Application to plant growth models

Benoit Bayol , Yuting Chen , Paul-Henry Cournède
SIMULTECH 2013, Jul 2013, Iceland. pp.132-138, ⟨10.5220/0004481101320138⟩
Conference papers hal-01001669v1

Assessment of Interactions in Complex Mechanistic Models using Global Sensitivity Analysis

Qiongli Wu , Paul-Henry Cournède
International Conference "Interactions in Complex Systems", Jun 2013, Orléans, France
Conference papers hal-00826105v1
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Global sensitivity analysis of the NEMA model for its parameterization and biological diagnosis.

Qiongli Wu , Jessica Bertheloot , Paul-Henry Cournède
7th International Conference on Functional-Structural Plant Models (FSPM 2013), Jun 2013, Saariselkä, Finland
Conference papers hal-01456018v1
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Iterative convolution particle filtering for nonlinear parameter estimation and data assimilation with application to crop yield prediction

Yuting Chen , Samis Trevezas , Paul-Henry Cournède
Society for Industrial and Applied Mathematics (SIAM): Control & its Applications 2013, Jul 2013, San Diego, United States. pp.CHEN, ⟨10.1137/1.9781611973273.10⟩
Conference papers hal-00826052v1

Modelling Competition in Crop Populations via Reaction-­Diffusion Foliage Dynamics. With an Outlook on Tree Modelling

Robert Beyer , Paul-Henry Cournède
7th International Conference on Functional-Structural Plant Models (FSPM 2013), Jun 2013, Saariselkä, Finland. pp.201-203
Conference papers hal-00829756v1

Optimal Control of Crop Irrigation based on the Hamilton-Jacobi-Bellman Equation

Jacques Ramanathan , Yuting Chen , Paul-Henry Cournède
SIAM Conference on Control and its Applications, Jul 2013, San Diego, United States. pp.21-28, ⟨10.1137/1.9781611973273.4⟩
Conference papers hal-02777904v1

Sensitivity Analysis for Plant Models with Correlated Parameters: Application to the Characterization of Sun flower Genotypes

Qiongli Wu , Benoît Bayol , Fenni Kang , Jérémie Lecoeur , Paul-Henry Cournède
7th International Conference on Sensitivity Analysis of Model Output, Jul 2013, Nice, France
Conference papers hal-00826104v1
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Some sequential Monte Carlo techniques for Data Assimilation in a plant growth model

Yuting Chen , Samis Trevezas , Aman Gupta , Paul-Henry Cournède
Applied Stochastic Models and Data Analysis International Conference (ASMDA) 2013, Jun 2013, Spain. in press
Conference papers hal-00997736v1

A comprehensive global sensitivity analysis for biological model diagnosis and parameterization: application to the NEMA model

Qiongli Wu , Jessica Bertheloot , Paul-Henry Cournède
Seventh International Workshop on Functional-Structural Plant Models, Jun 2013, Saariselkä, Finland
Conference papers hal-00826102v1
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A nonlinear mixed effects model to explain inter-individual variability in plant populations

Charlotte Baey , Samis Trevezas , Paul-Henry Cournède
Applied Stochastic Models and Data Analysis International Conference (ASMDA) 2013, Jun 2013, Barcelona, Spain
Conference papers hal-00826175v1
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Evaluation of the Predictive Capacity of Five Plant Growth Models for Sugar Beet

Charlotte Baey , Anne Didier , Li Song , Sébastien Lemaire , Fabienne Maupas
Plant Growth Modeling, Simulation, Visualization and Applications - PMA12, Nov 2012, Shanghai, China. pp.30-37
Conference papers hal-00776389v2
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Assessment of Parameter Uncertainty in Plant Growth Model Identification

Yuting Chen , Paul-Henry Cournède
2012 IEEE 4th International Symposium on Plant Growth Modeling, Simulation, Visualization and Applications, Oct 2012, China. CHEN, page 43
Conference papers hal-00776551v1
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Filtrage par noyaux de convolution itératif

Yuting Chen , Benoît Bayol , Cédric Loi , Samis Trevezas , Paul-Henry Cournède
Les 44 Journées de Statistique, May 2012, Bruxelles, Belgique. pp.CHEN
Conference papers hal-00776397v1
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SUNLAB: a Functional-Structral Model for Genotypic and Phenotypic Characterization of the Sunflower Crop

Fenni Kang , Veronique Letort , Hugo Magaldi , Paul-Henry Cournède , Jérémie Lecoeur
2012 IEEE 4th International Symposium on Plant Growth Modeling, Simulation, Visualization and Applications, Oct 2012, Shanghai, China. pp.148-151
Conference papers hal-00781183v1

A methodology to study Complex Biophysical Systems with Global Sensitivity Analysis

Qiongli Wu , Paul-Henry Cournède
ESREL2011, Antoine Grall, Sep 2011, Troyes, France
Conference papers hal-00639549v1
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Bayesian Estimation in Functional-Structural Plant Models with Stochastic Organogenesis

Cédric Loi , Paul-Henry Cournède , Samis Trevezas
14th Applied Stochastic Models and Data Analysis International Conference (ASMDA 2011), Jun 2011, Rome, Italy
Conference papers hal-00653672v1
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Using a hierarchical segmented model to assess the dynamics of leaf appearance in plant populations.

Charlotte Baey , Paul-Henry Cournède
14th Applied Stochastic Models and Data Analysis International Conference (ASMDA 2011), Jun 2011, Rome, Italy
Conference papers inria-00602419v1

Effects of pod position and its appearance time on pod and seed abortion in winter oilseed rape (Brassica napus L.)

Xiujuan X. Wang , Amélie A. Mathieu , Paul-Henry P.-H. Cournède , Jean Michel J. M. Allirand , Alexandra A. Jullien
13. International Rapeseed Congress, Jun 2011, Pargue, Czech Republic. pp.154-157
Conference papers hal-01000458v1

A functional-structural model of nitrogen economy within wheat culms after flowering

Jessica Bertheloot , Paul-Henry P.-H. Cournède , Q. Wu , Bruno Andrieu
12. ESA Congress, Aug 2010, Montpellier, France
Conference papers hal-01192285v1
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A symbolic method to compute the probability distribution of the number of pattern occurences in random texts generated by stochastic 0L-systems

Cedric Loi , Paul-Henry Cournède , Jean Françon
21st International Meeting on Probabilistic, Combinatorial, and Asymptotic Methods in the Analysis of Algorithms (AofA'10), 2010, Vienna, Austria. pp.473-488, ⟨10.46298/dmtcs.2774⟩
Conference papers inria-00529137v2
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Sensitivity analysis of GreenLab model for maize

Qiongli Wu , Paul-Henry Cournède
3rd international symposium on Plant Growth and Applications (PMA09), Nov 2010, Beijing, China
Conference papers inria-00532950v1

Calibration of a probabilistic model of oilseed rape fertility to analyze the inter-variety variability in number of seeds

X. Wang , Amélie Mathieu , Paul-Henry P.-H. Cournède , Jean Michel Allirand , Alexandra Jullien
6. International Workshop, Sep 2010, Davis, United States
Conference papers hal-01192265v1
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Assessment of Non-Linearity in Functional-Structural Plant Models

Qiongli Wu , Jessica Bertheloot , Amélie Mathieu , Bruno Andrieu , Paul-Henry Cournède
FSPM 2010 - 6th International Workshop on Functional-Structural Plant Models, Sep 2010, Davis, California, United States
Conference papers hal-01192293v2
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The use of Sensitivity Analysis for the design of Functional Structural Plant Models

Qiongli Wu , Paul-Henry Cournède
Sixth international conference on sensitivity analysis of model output, Jul 2010, Milan, Italy. pp.7768-7769
Conference papers hal-00534046v1
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Impact of topology on plant functioning : a theoretical analysis based on the GreenLab model equations

Véronique Letort , Paul-Henry Cournède , Philippe de Reffye
2009 Plant Growth Modeling And Applications, Nov 2009, Beijing, China. pp.341-348
Conference papers hal-00546801v1
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Stochastic models in floral biology and its application to the study of oilseed rape (Brassica napus L.) fertility

Wang Xiujuan , Amélie Mathieu , Paul-Henry Cournède , Jean-Michel Allirand , Alexandra Jullien
Third International Symposium on Plant Growth Modeling, Simulation, Visualization and Applications (PMA09), Nov 2009, Beijing, China
Conference papers inria-00529375v1
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Modeling Inter-Individual Variability in Sugar Beet Populations

P. de Reffye , Sébastien Lemaire , Nitish Srivastava , Fabienne Maupas , Paul-Henry Cournède
Third International Symposium on Plant Growth Modeling, Simulation, Visualization and Applications (PMA09), Nov 2009, Beijing, China
Conference papers inria-00537646v1
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A stochastic growth model of grapevine with full interaction between environment, trophic competition and plant development.

Benoit Pallas , Cedric Loi , Angélique Christophe , Paul-Henry Cournède , Jérémie Lecoeur
Third International Symposium on Plant Growth Modeling, Simulation, Visualization and Applications (PMA09), Nov 2009, Pékin, China. pp.95-102
Conference papers inria-00546291v1

Stochastic models in floral biology and application to the study of oilseed rape fertility

Xiujuan Wang , Amélie Mathieu , Paul-Henry P.-H. Cournède , Jean Michel Allirand , Philippe Verchère de Reffye
Third International Symposium on Plant Growth Modeling, Simulation, Visualization and Applications (PMA09), Ville service., Nov 2009, Beijing, China. 454 p., ⟨10.1109/PMA.2009.12⟩
Conference papers hal-01192317v1

Modelling of branch and flower expansion in GreenLab model to account for the whole crop cycle of Winter Oilseed Rape (Brassica Napus L.)

Alexandra Jullien , Amélie Mathieu , Jean Michel Allirand , Amélie Pinet , Philippe Verchère de Reffye
Third International Symposium on Plant Growth Modeling, Simulation, Visualization and Applications (PMA09), Ville service., Nov 2009, Beijing, China. 454 p
Conference papers hal-01192313v1
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Towards a continuous approach of functional-structural plant growth

Zhongping Li , Vincent Le Chevalier , Paul-Henry Cournède
Third International Symposium on Plant Growth Modeling, Simulation, Visualization and Applications (PMA09), Nov 2009, Beijing, China. pp.334-340, ⟨10.1109/PMA.2009.69⟩
Conference papers hal-00529351v1
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Plants as Combinatorial Structures and Applications

Cedric Loi , Paul-Henry Cournède , Jean Françon
Third International Symposium on Plant Growth Modeling, Simulation, Visualization and Applications (PMA09), Nov 2009, Pékin, China. pp.319-326, ⟨10.1109/pma.2009.27⟩
Conference papers inria-00546283v1
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Simulation of morphological plasticity of Acacia tortilis in response to herbivore attacks

Amélie Mathieu , Véronique Letort , Renaud Gosset , Jacques Gignoux , Paul-Henry Cournède
Third International Symposium on Plant Growth Modeling, Simulation, Visualization and Applications (PMA09), Saisissez le nom du laboratoire, du service ou du département., Ville service., 2009, Beijing, China. 454 p
Conference papers inria-00543136v1
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A Forest Growth Simulator Based on Functional-Structural Modelling of Individual Trees

Paul-Henry Cournède , Thomas Guyard , Benoit Bayol , Sébastien Griffon , François de Coligny
Third International Symposium on Plant Growth Modeling, Simulation, Visualization and Applications (PMA09), IEEE, Nov 2009, Beijing, China. pp.34-41, ⟨10.1109/PMA.2009.55⟩
Conference papers inria-00529096v1
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Analysis of the density effects on the source-sink dynamics in Sugar-Beet growth

Sébastien Lemaire , Fabienne Maupas , Paul-Henry Cournède , Jean-Michel Allirand , Bertrand Ney
Third International Symposium on Plant Growth Modeling, Simulation, Visualization and Applications (PMA09), Nov 2009, Beijing, China. 454 p
Conference papers inria-00543137v1
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A morphogenetic crop model for sugar-beet (Beta vulgaris L.)

Sébastien Lemaire , Fabienne Maupas , Paul-Henry Cournède , Philippe de Reffye
ISCMDS, Apr 2008, Nanjing, China
Conference papers inria-00336415v3

Analyse et modélisation de l'architecture des Plantes

Daniel Auclair , Jean-François Barczi , Daniel Barthélémy , Frédéric Blaise , Yves Caraglio
Plantes et peuplements virtuels, Institut National de Recherche Agronomique (INRA). UAR Département Adjoint Ecologie des Forêts, Prairies et Milieux Aquatiques (0940)., Mar 2008, Lyon, France
Conference papers hal-01032386v1
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A Functional-Structural Plant Model-Theory and Applications in Agronomy

Meng Zhen Kang , Paul-Henry Cournède , Amélie Mathieu , Véronique Letort , Rui Qi
International Symposium on Crop Modeling and Decision Support: ISCMDS 2008, Apr 2008, Nanjing, China
Conference papers inria-00380520v1
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Generating Functions of Stochastic L-Systems and Application to Models of Plant Development

Cedric Loi , Paul Henry Cournède
Fifth Colloquium on Mathematics and Computer Science, 2008, Kiel, Germany. pp.325-338, ⟨10.46298/dmtcs.3574⟩
Conference papers hal-01194661v1

Is it possible to simulate rapeseed organ mass in relation to N nutrition ? Calibration of the functional-structural model GREENLAB for the oilseed rape Brassica napus L. during the vegetative phase for two nitrogen nutrition levels

Alexandra Jullien , Jean Michel Allirand , Paul-Henry P.-H. Cournède , A. Matthieu , P. de Reffye
12. International Rapeseed Congress, Mar 2007, Wuhan, China
Conference papers hal-01191922v1

Rhythms and alternating patterns in plants as emergent properties of a model of interaction between development and functioning

Amélie Mathieu , Paul-Henry Cournède , Daniel Barthélémy , Philippe de Reffye
Second International Symposium on Plant Growth Modeling, Simulation, Visualization and Applications, PMA06, Nov 2006, Beijin, China. ⟨10.1093/aob/mcm171⟩
Conference papers hal-02824878v1
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Effect of topological and phenological changes on biomass partitioning in Arabidopsis thaliana inflorescence: a preliminary model-based study

Veronique Letort , Paul-Henry Cournède , Jérémie Lecoeur , Irène Hummel , Philippe de Reffye
PMA06, Plant Growth Modeling, Simulation, Visualization and applications, Nov 2006, Beijing, China. pp.65-69
Conference papers hal-00576589v1
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Adaptation of the GreenLab model for analyzing sink-source relationships in Chinese Pine saplings

Hong Guo , Veronique Letort , Lingxia Hong , Thierry Fourcaud , Paul-Henry Cournède
PMA06, Plant growth modeling, Simulation, Visualization and Applications, Nov 2006, Beijing, China. pp.236-243
Conference papers hal-00576583v1
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Optimizing plant growth model parameters for genetic selection based on QTL mapping

Veronique Letort , Paul Mahe , Paul-Henry Cournède , P. de Reffye , Brigitte Courtois
Plant Growth Modeling, Simulation, Visualization and applications, Nov 2006, Beijing, China. pp.16-21
Conference papers hal-00829810v1
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The Influence of Photosynthesis on the Number of Metamers per Growth Unit in GreenLab Model

Amelie Mathieu , Paul-Henry Cournède , Philippe de Reffye
4TH International Workshop on Functional-Structural Plant Models, Jun 2004, Montpellier, France
Conference papers hal-00124845v1

Theoretical Study and Numerical Simulation of a Stochastic Model for Plant Growth

M.Z. Kang , Paul-Henry Cournède , J. Le Roux , Philippe de Reffye , B.G. Hu
7th African Conference on Research in Computer Science, Nov 2004, Hammamet, Tunisia
Conference papers inria-00121499v1

A Water Supply Optimization Problem for Plant Growth Based on GreenLab Model

L. Wu , François-Xavier Le Dimet , B.G. Hu , Paul-Henry Cournède , Philippe de Reffye
7éme Colloque Africain sur la Recherche en Informatique (CARI'04), Nov 2004, Mammamet, Tunisia
Conference papers inria-00122491v1
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Better than RECIST and faster than iRECIST: defining the Immunotherapy Progression Decision score to better manage progressive tumors on immunotherapy

Younes Belkouchi , Hugues Talbot , Nathalie Lassau , Littisha Lawrance , Siham Farhane
ESMO 2022, Sep 2022, Paris, France.
Conference poster hal-03780911v1
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WHEAMM: a functional-structural model to study plant growth and interactions with neighbors in wheat variety mixtures

Meije Gawinowski , Jérôme Enjalbert , Paul-Henry P.-H. Cournède , Timothée Flutre
FSPM 2020 : 9th International Conference on FUNCTIONAL-STRUCTURAL PLANT MODELS, Oct 2020, Hanovre (Virtual Conference), Germany
Conference poster hal-02961398v1

Testing variance components in nonlinear mixed effects models. Application to plant growth modelling

Estelle Kuhn , Charlotte Baey , Paul Henry Cournède
31-th European Meeting of Statisticians -EMS, Jul 2017, Helsinki, Finland. 2017
Conference poster hal-01607982v1
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Multiscale Functional-Structural Plant Modelling at the Example of Apple Trees

Benoit Bayol , Gerhard G. Buck-Sorlin , Faustino Chi , Evelyne Costes , Paul Henry Cournède
International Conference on Functional-Structural Plant Growth Modeling, Simulation, Visualization and Applications (FSPMA 2016), Nov 2016, Qingdao, China. 2016, ⟨10.1109/FSPMA.2016.7818281⟩
Conference poster hal-01602793v1

Testing variance components in nonlinear mixed effects models. Application to plant growth modelling

Estelle Kuhn , Paul Henry Cournède , Charlotte Baey
9. International Conference of the ERCIM WG on Computational and Methodological Statistics (CMStatistics 2016), Dec 2016, Seville, Spain. 2016
Conference poster hal-01607339v1

Approximate Bayesian Inference using the Mean-Field Distribution

Antonin Della Noce , Paul-Henry Cournède
Data Analysis and Related Applications 1: Computational, Algorithmic and Applied Economic Data Analysis, Volume 9, 1, Wiley, 2022, 9781394165513. ⟨10.1002/9781394165513.ch24⟩
Book sections hal-04374332v1

Neural Networks to Predict Survival from RNA-seq Data in Oncology

Mathilde Sautreuil , Sarah Lemler , Paul-Henry P.-H. Cournède
Computational Methods in Systems Biology, pp.122-140, 2021, ⟨10.1007/978-3-030-85633-5_8⟩
Book sections hal-03347253v1

Reachability Design Through Approximate Bayesian Computation

Mahmoud Bentriou , Paolo Ballarini , Paul-Henry Cournède
Computational Methods in Systems Biology, pp.207-223, 2019, ⟨10.1007/978-3-030-31304-3_11⟩
Book sections hal-02317539v1
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Modèles Dynamiques de la Croissance des Plantes : Succès et Défis

Paul-Henry P.-H. Cournède
Potentiels de la science pour une agriculture durable, Académie d'Agriculture de France. Edition: Jean-Claude Pernollet., , 2018
Book sections hal-02285935v1

Le passage de la plante au peuplement

Paul-Henry P.-H. Cournède , Philippe de Reffye
Philippe de Reffye; Marc Jaeger; Daniel Barthélémy; François Houllier. Architecture et croissance des plantes. Modélisation et croissances des plantes, 2016, Synthèses, 978-27592-2622-1
Book sections hal-02295378v1

Méthodes inverses et identification paramétrique de modèles d'architecture végétale

Philippe de Reffye , Francois Houllier , Paul-Henry P.-H. Cournède
Philippe de Reffye; Marc Jaeger; Daniel Barthélémy; François Houllier. Architecture et croissance des plantes. Modélisation et applications, , 2016, Synthèses, 978-27592-2622-1
Book sections hal-02539715v1

Parameterization of plant growth models to characterize genotype by environment interactions: a methodology adapted to breeding programs

Fenni Kang , Thomas Galinier , Paul-Henry Cournède , Jérémie Lecoeur
Halford, N. and Semenov, M. Aspects of Applied Biology 107: Systems Approaches to Crop Improvement, The Association of Applied Biologists, pp.27-35, 2011
Book sections hal-00872388v1

Nitrogen acquisition and utilization by crops: review of different approaches and proposition of a mechanistic modeling

Jessica Bertheloot , Paul-Henry Cournède , Bruno Andrieu
Third International Symposium on Plant Growth Modeling, Simulation, Visualization and Applications: proceedings, 9-13 November 2009, Beijing, China, IEEE Computer Society, 454 p., 2010, Plant Growth Modeling, Simulation, Visualization and Applications, 978-0-7695-3988-1
Book sections hal-01192311v1

A Functional-Structural Plant Model: Theories and its Applications in Agronomy

Meng Zhen Kang , Paul-Henry Cournède , Amélie Mathieu , Veronique Letort , Rui Qi
Cao, W. and White, J. and Wang, E. Crop Modeling and Decision Support, Springer, pp.148-160, 2009, 978-3-642-01131-3. ⟨10.1007/978-3-642-01132-0_16⟩
Book sections hal-00872390v1

Plant growth models

Philippe de Reffye , E. Heuvelink , Daniel Barthélémy , Paul-Henry Cournède
Jorgensen, S. E., Fath, B. D. Encyclopedia of Ecology, Elsevier, pp.2824-2838, 2008
Book sections halsde-00341036v1

Modélisation et simulation de l'architecture et de la production végétales

Philippe de Reffye , Daniel Barthélémy , Paul-Henry Cournède , Marc Jaeger
Francis Hallé. Aux origines des plantes : des plantes anciennes à la botanique du XXIe siècle, Fayard, pp.184-227, 2008
Book sections halsde-00341034v1
Image document

Dynamic System of Plant Growth

Paul-Henry Cournède
Mathematics [math]. Université Montpellier II - Sciences et Techniques du Languedoc, 2009
Habilitation à diriger des recherches tel-00377462v2