Paul-Henry Cournède
Présentation
2009 HDR Montpellier University 2001 PhD in Applied Mathematics, Ecole Centrale Paris 1997 Ingénieur Ecole Centrale Paris 1997 Certificate of Advanced Studies in Mathematics, Part III, Cambridge University 1992-1994 BJ
Publications
Publications
Contrasted reaction norms of wheat yield in pure vs mixed stands explained by tillering plasticities and shade avoidanceESA 2024, Aug 2024, Rennes, France |
|
|
|
Counterfactual Analysis for Digital Histopathology Slides Using Human Interpretable FeaturesMIDL 2024 - Medical Imaging with Deep Learning, Jul 2024, Paris, France. Online ahead of print |
|
|
Spatio-Temporal Analysis of Patient-Derived Organoid Videos Using Deep Learning for the Prediction of Drug EfficacyICCV workshop 2023, Oct 2023, Paris, France |
|
|
142P Correlating total tumor volume on CT-Scan and liquid biopsy ctDNA in 1017 patients with metastatic cancer: A novel studyESMO Congress 2023, European Society for Medical Oncology, Oct 2023, Madrid, Spain. pp.S237, ⟨10.1016/j.annonc.2023.09.2867⟩ |
|
|
1022MO Predicting overall survival of patients with melanoma and NSCLC treated with immunotherapy using AI combining total tumor volume and tumor heterogeneity on CT-ScansESMO 2023 - Congress of European Society for Medical Oncology, European Society for Medical Oncology, Oct 2023, Madrid, Spain. pp.S622, ⟨10.1016/j.annonc.2023.09.2161⟩ |
|
|
A Formal Approach for Tuning Stochastic OscillatorsComputational Methods in Systems Biology, Sep 2023, Luxembourg, Luxembourg. pp.1-17, ⟨10.1007/978-3-031-42697-1_1⟩ |
|
|
Structured State Space Models for Multiple Instance Learning in Digital PathologyMICCAI 2023, Oct 2023, Vancouver, Canada. ⟨10.1007/978-3-031-43907-0_57⟩ |
|
|
Developing WHEAMM, a new FSPM for the simulation of wheat cultivar mixtures. Feedbacks on model conception, sensitivity analysis and automatic calibration in JuliaPresentation for the Wageningen FSPM group, Apr 2023, Online, France |
|
|
Etude des mélanges de variétés de blé tendre avec une approche interdisciplinaire entre expérimentation au champ et modélisation mécanisteECOScience, Mar 2023, Palaiseau, France |
|
|
WHEAMM: a new functional-structural plant model to study plastic responses to competition for light in wheat cultivar mixturesPlantComp2022, Oct 2022, Gand, Belgium |
|
|
Hyper-AdaC: Adaptive clustering-based hypergraph representation of whole slide images for survival analysisML4H 2022 - Machine Learning for Health, Nov 2022, New Orelans, France. pp.405-418 |
Towards the statistical inference of WHEAMM's parametersRéunion du groupe de travail Modélisation du projet MoBiDiv, Feb 2022, En ligne, France |
|
Comprendre les normes de réactions dans les mélanges intraspécifiques à l'aide d'un modèle et d'une expérience à l'échelle de la planteColloque interne de l'UMR GQE - Le Moulon, Jun 2021, Gif-sur-Yvette, France |
|
Normes de réaction et plasticité phénotypique des plantes selon l'hétérogénéité de leur voisinage: cas du blé en monoculture versus mélange variétalPetit Pois Déridé, May 2022, Lille, France |
|
WHEAMM : a functional-structural model to study the quantitative genetics of wheat variety mixturesSéminaire INRAE-CIRAD sur la modélisation des cultures, Dec 2021, Montpellier, France |
|
On the Use of Neural Networks with Censored Time-to-Event DataInternational Symposium on Mathematical and Computational Oncology - ISMCO 2020, Oct 2020, Paris, France. pp.56-67, ⟨10.1007/978-3-030-64511-3_6⟩ |
|
Developping WHEAMM, a functional-structural model of wheat variety mixtures to study the genetic basis of phenotypic plasticity in an agricultural contextRéunion annuelle du GDR PlasPhen, Nov 2020, Montpellier, France |
|
|
|
Simulation de la densité limite de champ moyen pour des populations hétérogènes avec interactions22ème Rencontre du Non-Linéaire, Mar 2019, Paris, France |
Assimilation de données par filtrage particulaire régularisé dans un modèle d'épidémiologie50èmes journées de Statistique de a SFdS, May 2018, Palaiseau, France |
|
Crop recognition from sequential sentinel-1 images with lstm recurrent networks6th International Symposium on Plant Growth Modeling, Simulation, Visualization and Applications (PMA), Nov 2018, Hefei, China |
|
Modèles de population avec interactions : de la limite de champ moyen à l'approximation de champ moyen.50èmes journées de Statistique de la SFdS, May 2018, Palaiseau, France |
|
Application of Weighted Regression for the Prediction of Soft Wheat Production in France6th International Symposium on Plant Growth Modeling, Simulation, Visualization and Applications (PMA) 2018, Nov 2018, Hefei, China. pp.141-146, ⟨10.1109/pma.2018.8611566⟩ |
|
Sensitivity analysis to help individual plant model parameterization for winter oilseed rapeInternational Conference on Functional-Structural Plant Growth Modeling, Simulation, Visualization and Applications (FSPMA 2016), FSPMA 2016., Nov 2016, Qingdao, China. ⟨10.1109/fspma.2016.7818299⟩ |
|
Modeling soil temperature to predict emergence2016 IEEE International Conference on Functional-Structural Plant Growth Modeling, Simulation, Visualization and Applications (FSPMA), Nov 2016, Qingdao, China. ⟨10.1109/FSPMA.2016.7818285⟩ |
|
Impact of geometrical traits on light interception in conifers analysis using an FSPM for Scots pineIEEE International Conference on Functional-Structural Plant Growth Modeling, Simulation, Visualization and Applications (FSPMA), Nov 2016, Qingdao, China. ⟨10.1109/FSPMA.2016.7818307⟩ |
|
|
|
A data augmentation scheme embedding a sequential Monte Carlo method for Bayesian parameter inference in state space models48èmes Journées de Statistique de la SFdS, May 2016, Montpellier, France |
|
|
Modeling the inter-individual variability of single-stemmed plant developmentInternational Conference on Functional-Structural Plant Growth Modeling, Simulation, Visualization and Applications (FSPMA 2016), Nov 2016, Qingdao, China. ⟨10.1109/fspma.2016.7818287⟩ |
WIP - Promoting good modeling practice with a domain-specific language and statistical algorithms designed for parallel computingDEVS '15: Proceedings of the Symposium on Theory of Modeling & Simulation: DEVS Integrative M&S Symposium, Apr 2015, San Diego, United States |
|
|
|
A Comparison of a Generic MCMC-Based Algorithm for Bayesian Estimation in C++, R and Julia. Application to Plant Growth Modeling2015 Spring Simulation Multi-Conference The Society for Modeling & Simulation International, Apr 2015, Alexandria, United States |
|
|
Towards an EDSL to enhance good modelling practice for non-linear stochastic discrete dynamical models Application to plant growth modelsSIMULTECH 2013, Jul 2013, Iceland. pp.132-138, ⟨10.5220/0004481101320138⟩ |
A comprehensive global sensitivity analysis for biological model diagnosis and parameterization: application to the NEMA modelSeventh International Workshop on Functional-Structural Plant Models, Jun 2013, Saariselkä, Finland |
|
|
|
A nonlinear mixed effects model to explain inter-individual variability in plant populationsApplied Stochastic Models and Data Analysis International Conference (ASMDA) 2013, Jun 2013, Barcelona, Spain |
|
|
Global sensitivity analysis of the NEMA model for its parameterization and biological diagnosis.7th International Conference on Functional-Structural Plant Models (FSPM 2013), Jun 2013, Saariselkä, Finland |
Assessment of Interactions in Complex Mechanistic Models using Global Sensitivity AnalysisInternational Conference "Interactions in Complex Systems", Jun 2013, Orléans, France |
|
Modelling Competition in Crop Populations via Reaction-Diffusion Foliage Dynamics. With an Outlook on Tree Modelling7th International Conference on Functional-Structural Plant Models (FSPM 2013), Jun 2013, Saariselkä, Finland. pp.201-203 |
|
|
|
Optimal Control of Crop Irrigation based on the Hamilton-Jacobi-Bellman EquationSIAM Conference on Control and its Applications, Jul 2013, San Diego, United States. pp.21-28, ⟨10.1137/1.9781611973273.4⟩ |
|
|
Iterative convolution particle filtering for nonlinear parameter estimation and data assimilation with application to crop yield predictionSociety for Industrial and Applied Mathematics (SIAM): Control & its Applications 2013, Jul 2013, San Diego, United States. pp.CHEN, ⟨10.1137/1.9781611973273.10⟩ |
|
|
Some sequential Monte Carlo techniques for Data Assimilation in a plant growth modelApplied Stochastic Models and Data Analysis International Conference (ASMDA) 2013, Jun 2013, Spain. in press |
Sensitivity Analysis for Plant Models with Correlated Parameters: Application to the Characterization of Sun flower Genotypes7th International Conference on Sensitivity Analysis of Model Output, Jul 2013, Nice, France |
|
|
|
SUNLAB: a Functional-Structral Model for Genotypic and Phenotypic Characterization of the Sunflower Crop2012 IEEE 4th International Symposium on Plant Growth Modeling, Simulation, Visualization and Applications, Oct 2012, Shanghai, China. pp.148-151 |
|
|
Filtrage par noyaux de convolution itératifLes 44 Journées de Statistique, May 2012, Bruxelles, Belgique. pp.CHEN |
|
|
Assessment of Parameter Uncertainty in Plant Growth Model Identification2012 IEEE 4th International Symposium on Plant Growth Modeling, Simulation, Visualization and Applications, Oct 2012, China. CHEN, page 43 |
|
|
Evaluation of the Predictive Capacity of Five Plant Growth Models for Sugar BeetPlant Growth Modeling, Simulation, Visualization and Applications - PMA12, Nov 2012, Shanghai, China. pp.30-37 |
Effects of pod position and its appearance time on pod and seed abortion in winter oilseed rape (Brassica napus L.)13. International Rapeseed Congress, Jun 2011, Prague, Czech Republic. pp.154-157 |
|
A methodology to study Complex Biophysical Systems with Global Sensitivity AnalysisESREL2011, Antoine Grall, Sep 2011, Troyes, France |
|
|
|
Bayesian Estimation in Functional-Structural Plant Models with Stochastic Organogenesis14th Applied Stochastic Models and Data Analysis International Conference (ASMDA 2011), Jun 2011, Rome, Italy |
|
|
Using a hierarchical segmented model to assess the dynamics of leaf appearance in plant populations.14th Applied Stochastic Models and Data Analysis International Conference (ASMDA 2011), Jun 2011, Rome, Italy |
|
|
The use of Sensitivity Analysis for the design of Functional Structural Plant ModelsSixth international conference on sensitivity analysis of model output, Jul 2010, Milan, Italy. pp.7768-7769 |
|
|
Impact of topology on plant functioning : a theoretical analysis based on the GreenLab model equations2009 Plant Growth Modeling And Applications, Nov 2009, Beijing, China. pp.341-348 |
A functional-structural model of nitrogen economy within wheat culms after flowering12. ESA Congress, Aug 2010, Montpellier, France |
|
|
|
Assessment of Non-Linearity in Functional-Structural Plant ModelsFSPM 2010 - 6th International Workshop on Functional-Structural Plant Models, Sep 2010, Davis, California, United States |
Modelling of branch and flower expansion in GreenLab model to account for the whole crop cycle of Winter Oilseed Rape (Brassica Napus L.)Third International Symposium on Plant Growth Modeling, Simulation, Visualization and Applications (PMA09), Ville service., Nov 2009, Beijing, China. 454 p |
|
Calibration of a probabilistic model of oilseed rape fertility to analyze the inter-variety variability in number of seeds6. International Workshop, Sep 2010, Davis, United States |
|
|
|
A symbolic method to compute the probability distribution of the number of pattern occurences in random texts generated by stochastic 0L-systems21st International Meeting on Probabilistic, Combinatorial, and Asymptotic Methods in the Analysis of Algorithms (AofA'10), 2010, Vienna, Austria. pp.473-488, ⟨10.46298/dmtcs.2774⟩ |
|
|
Stochastic models in floral biology and its application to the study of oilseed rape (Brassica napus L.) fertilityThird International Symposium on Plant Growth Modeling, Simulation, Visualization and Applications (PMA09), Nov 2009, Beijing, China |
|
|
Stochastic models in floral biology and application to the study of oilseed rape fertilityThird International Symposium on Plant Growth Modeling, Simulation, Visualization and Applications (PMA09), Ville service., Nov 2009, Beijing, China. 454 p., ⟨10.1109/PMA.2009.12⟩ |
|
|
Analysis of the density effects on the source-sink dynamics in Sugar-Beet growthThird International Symposium on Plant Growth Modeling, Simulation, Visualization and Applications (PMA09), Nov 2009, Beijing, China. 454 p |
|
|
Towards a continuous approach of functional-structural plant growthThird International Symposium on Plant Growth Modeling, Simulation, Visualization and Applications (PMA09), Nov 2009, Beijing, China. pp.334-340, ⟨10.1109/PMA.2009.69⟩ |
|
|
Plants as Combinatorial Structures and ApplicationsThird International Symposium on Plant Growth Modeling, Simulation, Visualization and Applications (PMA09), Nov 2009, Pékin, China. pp.319-326, ⟨10.1109/pma.2009.27⟩ |
|
|
Simulation of morphological plasticity of Acacia tortilis in response to herbivore attacksThird International Symposium on Plant Growth Modeling, Simulation, Visualization and Applications (PMA09), Saisissez le nom du laboratoire, du service ou du département., Ville service., 2009, Beijing, China. 454 p |
|
|
Modeling Inter-Individual Variability in Sugar Beet PopulationsThird International Symposium on Plant Growth Modeling, Simulation, Visualization and Applications (PMA09), Nov 2009, Beijing, China |
|
|
Sensitivity analysis of GreenLab model for maize3rd international symposium on Plant Growth and Applications (PMA09), Nov 2010, Beijing, China |
|
|
A stochastic growth model of grapevine with full interaction between environment, trophic competition and plant development.Third International Symposium on Plant Growth Modeling, Simulation, Visualization and Applications (PMA09), Nov 2009, Pékin, China. pp.95-102 |
|
|
A Forest Growth Simulator Based on Functional-Structural Modelling of Individual TreesThird International Symposium on Plant Growth Modeling, Simulation, Visualization and Applications (PMA09), IEEE, Nov 2009, Beijing, China. pp.34-41, ⟨10.1109/PMA.2009.55⟩ |
|
|
A Functional-Structural Plant Model-Theory and Applications in AgronomyInternational Symposium on Crop Modeling and Decision Support: ISCMDS 2008, Apr 2008, Nanjing, China |
|
|
Rhythms and alternating patterns in plants as emergent properties of a model of interaction between development and functioningSecond International Symposium on Plant Growth Modeling, Simulation, Visualization and Applications, PMA06, Nov 2006, Beijin, China. ⟨10.1093/aob/mcm171⟩ |
|
|
Generating Functions of Stochastic L-Systems and Application to Models of Plant DevelopmentFifth Colloquium on Mathematics and Computer Science, 2008, Kiel, Germany. pp.325-338, ⟨10.46298/dmtcs.3574⟩ |
|
|
A morphogenetic crop model for sugar-beet (Beta vulgaris L.)ISCMDS, Apr 2008, Nanjing, China |
Analyse et modélisation de l'architecture des PlantesPlantes et peuplements virtuels, Institut National de Recherche Agronomique (INRA). UAR Département Adjoint Ecologie des Forêts, Prairies et Milieux Aquatiques (0940)., Mar 2008, Lyon, France |
|
Is it possible to simulate rapeseed organ mass in relation to N nutrition ? Calibration of the functional-structural model GREENLAB for the oilseed rape Brassica napus L. during the vegetative phase for two nitrogen nutrition levels12. International Rapeseed Congress, Mar 2007, Wuhan, China |
|
Generation of rhythms in plant development controlled by their functioning: theoretical and numerical study2. International Symposium on Plant Growth Modeling, Simulation, Visualization and Applications, Nov 2006, Beijing, China |
|
|
|
Effect of topological and phenological changes on biomass partitioning in Arabidopsis thaliana inflorescence: a preliminary model-based studyPMA06, Plant Growth Modeling, Simulation, Visualization and applications, Nov 2006, Beijing, China. pp.65-69 |
|
|
Adaptation of the GreenLab model for analyzing sink-source relationships in Chinese Pine saplingsPMA06, Plant growth modeling, Simulation, Visualization and Applications, Nov 2006, Beijing, China. pp.236-243 |
|
|
Optimizing plant growth model parameters for genetic selection based on QTL mappingPlant Growth Modeling, Simulation, Visualization and applications, Nov 2006, Beijing, China. pp.16-21 |
A Water Supply Optimization Problem for Plant Growth Based on GreenLab Model7éme Colloque Africain sur la Recherche en Informatique (CARI'04), Nov 2004, Mammamet, Tunisia |
|
Theoretical Study and Numerical Simulation of a Stochastic Model for Plant Growth7th African Conference on Research in Computer Science, Nov 2004, Hammamet, Tunisia |
|
|
|
The Influence of Photosynthesis on the Number of Metamers per Growth Unit in GreenLab Model4TH International Workshop on Functional-Structural Plant Models, Jun 2004, Montpellier, France |
|
|
Better than RECIST and faster than iRECIST: defining the Immunotherapy Progression Decision score to better manage progressive tumors on immunotherapyESMO 2022, Sep 2022, Paris, France. |
|
|
WHEAMM: a functional-structural model to study plant growth and interactions with neighbors in wheat variety mixturesFSPM 2020 : 9th International Conference on FUNCTIONAL-STRUCTURAL PLANT MODELS, Oct 2020, Hanovre (Virtual Conference), Germany |
Testing variance components in nonlinear mixed effects models. Application to plant growth modelling31-th European Meeting of Statisticians -EMS, Jul 2017, Helsinki, Finland. 2017 |
|
Testing variance components in nonlinear mixed effects models. Application to plant growth modelling9. International Conference of the ERCIM WG on Computational and Methodological Statistics (CMStatistics 2016), Dec 2016, Seville, Spain. 2016 |
|
|
|
Multiscale Functional-Structural Plant Modelling at the Example of Apple TreesInternational Conference on Functional-Structural Plant Growth Modeling, Simulation, Visualization and Applications (FSPMA 2016), Nov 2016, Qingdao, China. 2016, ⟨10.1109/FSPMA.2016.7818281⟩ |
The Transition from the Single Plant to the StandPhilippe de Reffye; Mengzhen Kang; Marc Jaeger; Baogui Zhang. Plant Model Greenlab for Botany and Agronomy, Springer Nature Singapore, pp.541-582, 2025, ⟨10.1007/978-981-97-7541-5_11⟩ |
|
Approximate Bayesian Inference using the Mean-Field DistributionData Analysis and Related Applications 1: Computational, Algorithmic and Applied Economic Data Analysis, Volume 9, 1, Wiley, 2022, 9781394165513. ⟨10.1002/9781394165513.ch24⟩ |
|
|
|
Neural Networks to Predict Survival from RNA-seq Data in OncologyComputational Methods in Systems Biology, pp.122-140, 2021, ⟨10.1007/978-3-030-85633-5_8⟩ |
Reachability Design Through Approximate Bayesian ComputationComputational Methods in Systems Biology, pp.207-223, 2019, ⟨10.1007/978-3-030-31304-3_11⟩ |
|
|
|
Modèles Dynamiques de la Croissance des Plantes : Succès et DéfisPotentiels de la science pour une agriculture durable, Académie d'Agriculture de France. Edition: Jean-Claude Pernollet., , 2018 |
Méthodes inverses et identification paramétrique de modèles d'architecture végétalePhilippe de Reffye; Marc Jaeger; Daniel Barthélémy; François Houllier. Architecture et croissance des plantes. Modélisation et applications, , 2016, Synthèses, 978-27592-2622-1 |
|
Le passage de la plante au peuplementPhilippe de Reffye; Marc Jaeger; Daniel Barthélémy; François Houllier. Architecture et croissance des plantes. Modélisation et croissances des plantes, 2016, Synthèses, 978-27592-2622-1 |
|
Parameterization of plant growth models to characterize genotype by environment interactions: a methodology adapted to breeding programsHalford, N. and Semenov, M. Aspects of Applied Biology 107: Systems Approaches to Crop Improvement, The Association of Applied Biologists, pp.27-35, 2011 |
|
Nitrogen acquisition and utilization by crops: review of different approaches and proposition of a mechanistic modelingThird International Symposium on Plant Growth Modeling, Simulation, Visualization and Applications: proceedings, 9-13 November 2009, Beijing, China, IEEE Computer Society, 454 p., 2010, Plant Growth Modeling, Simulation, Visualization and Applications, 978-0-7695-3988-1 |
|
A Functional-Structural Plant Model: Theories and its Applications in AgronomyCao, W. and White, J. and Wang, E. Crop Modeling and Decision Support, Springer, pp.148-160, 2009, 978-3-642-01131-3. ⟨10.1007/978-3-642-01132-0_16⟩ |
|
Modélisation et simulation de l'architecture et de la production végétalesAux origines des plantes : des plantes anciennes à la botanique du XXIe siècle, Fayard, 2008, 978-2-213-62836-3 |
|
Plant growth modelsEncyclopedia of Ecology, Elsevier, 2008, 978-0-08-045400-9. ⟨10.1016/B978-008045405-4.00217-2⟩ |
|
|
Simulation techniques for parameter estimation via a stochastic ECM algorithm with applications to plant growth modeling2013 |
Testing variance components in nonlinear mixed effects models.[Technical Report] 2017-1, auto-saisine. 2017, pp.24 |
|
|
|
A Markovian framework to formalize stochastic L-systems and application to models of plant development[Research Report] RR-6830, INRIA. 2008, pp.24 |
|
|
Computing the moments of probability distributions for branching processes[Research Report] RR-6728, INRIA. 2008, pp.23 |
|
|
A Positive MUSCL Scheme for TriangulationsRR-3465, INRIA. 1998 |
|
|
Dynamic System of Plant GrowthMathematics [math]. Université Montpellier II - Sciences et Techniques du Languedoc, 2009 |