Paul-Henry Cournède
160
Documents
Presentation
2009 HDR Montpellier University
2001 PhD in Applied Mathematics, Ecole Centrale Paris
1997 Ingénieur Ecole Centrale Paris
1997 Certificate of Advanced Studies in Mathematics, Part III, Cambridge University
1992-1994 BJ
Publications
On the Use of Neural Networks with Censored Time-to-Event DataInternational Symposium on Mathematical and Computational Oncology - ISMCO 2020, Oct 2020, Paris, France. pp.56-67, ⟨10.1007/978-3-030-64511-3_6⟩
Conference papers
hal-03127430v1
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Simulation de la densité limite de champ moyen pour des populations hétérogènes avec interactions22ème Rencontre du Non-Linéaire, Mar 2019, Paris, France
Conference papers
hal-02425831v1
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Crop recognition from sequential sentinel-1 images with lstm recurrent networks6th International Symposium on Plant Growth Modeling, Simulation, Visualization and Applications (PMA), Nov 2018, Hefei, China
Conference papers
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Assimilation de données par filtrage particulaire régularisé dans un modèle d'épidémiologie50èmes journées de Statistique de a SFdS, May 2018, Palaiseau, France
Conference papers
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Application of Weighted Regression for the Prediction of Soft Wheat Production in France6th International Symposium on Plant Growth Modeling, Simulation, Visualization and Applications (PMA) 2018, Nov 2018, Hefei, China. pp.141-146, ⟨10.1109/pma.2018.8611566⟩
Conference papers
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Modèles de population avec interactions : de la limite de champ moyen à l'approximation de champ moyen.50èmes journées de Statistique de la SFdS, May 2018, Palaiseau, France
Conference papers
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A data augmentation scheme embedding a sequential Monte Carlo method for Bayesian parameter inference in state space models48èmes Journées de Statistique de la SFdS, May 2016, Montpellier, France
Conference papers
hal-01355334v1
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Modeling soil temperature to predict emergence2016 IEEE International Conference on Functional-Structural Plant Growth Modeling, Simulation, Visualization and Applications (FSPMA), Nov 2016, Qingdao, China. ⟨10.1109/FSPMA.2016.7818285⟩
Conference papers
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Sensitivity analysis to help individual plant model parameterization for winter oilseed rapeInternational Conference on Functional-Structural Plant Growth Modeling, Simulation, Visualization and Applications (FSPMA 2016), FSPMA 2016., Nov 2016, Qingdao, China. ⟨10.1109/fspma.2016.7818299⟩
Conference papers
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Modeling the inter-individual variability of single-stemmed plant developmentInternational Conference on Functional-Structural Plant Growth Modeling, Simulation, Visualization and Applications (FSPMA 2016), Nov 2016, Qingdao, China. ⟨10.1109/fspma.2016.7818287⟩
Conference papers
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Impact of geometrical traits on light interception in conifers analysis using an FSPM for Scots pineIEEE International Conference on Functional-Structural Plant Growth Modeling, Simulation, Visualization and Applications (FSPMA), Nov 2016, Qingdao, China. ⟨10.1109/FSPMA.2016.7818307⟩
Conference papers
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A Comparison of a Generic MCMC-Based Algorithm for Bayesian Estimation in C++, R and Julia. Application to Plant Growth Modeling2015 Spring Simulation Multi-Conference The Society for Modeling & Simulation International, Apr 2015, Alexandria, United States
Conference papers
hal-01250999v1
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WIP - Promoting good modeling practice with a domain-specific language and statistical algorithms designed for parallel computingDEVS '15: Proceedings of the Symposium on Theory of Modeling & Simulation: DEVS Integrative M&S Symposium, Apr 2015, San Diego, United States
Conference papers
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A comprehensive global sensitivity analysis for biological model diagnosis and parameterization: application to the NEMA modelSeventh International Workshop on Functional-Structural Plant Models, Jun 2013, Saariselkä, Finland
Conference papers
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A nonlinear mixed effects model to explain inter-individual variability in plant populationsApplied Stochastic Models and Data Analysis International Conference (ASMDA) 2013, Jun 2013, Barcelona, Spain
Conference papers
hal-00826175v1
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Modelling Competition in Crop Populations via Reaction-Diffusion Foliage Dynamics. With an Outlook on Tree Modelling7th International Conference on Functional-Structural Plant Models (FSPM 2013), Jun 2013, Saariselkä, Finland. pp.201-203
Conference papers
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Global sensitivity analysis of the NEMA model for its parameterization and biological diagnosis.7th International Conference on Functional-Structural Plant Models (FSPM 2013), Jun 2013, Saariselkä, Finland
Conference papers
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Towards an EDSL to enhance good modelling practice for non-linear stochastic discrete dynamical models Application to plant growth modelsSIMULTECH 2013, Jul 2013, Iceland. pp.132-138, ⟨10.5220/0004481101320138⟩
Conference papers
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Assessment of Interactions in Complex Mechanistic Models using Global Sensitivity AnalysisInternational Conference "Interactions in Complex Systems", Jun 2013, Orléans, France
Conference papers
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Sensitivity Analysis for Plant Models with Correlated Parameters: Application to the Characterization of Sun flower Genotypes7th International Conference on Sensitivity Analysis of Model Output, Jul 2013, Nice, France
Conference papers
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Some sequential Monte Carlo techniques for Data Assimilation in a plant growth modelApplied Stochastic Models and Data Analysis International Conference (ASMDA) 2013, Jun 2013, Spain. in press
Conference papers
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Iterative convolution particle filtering for nonlinear parameter estimation and data assimilation with application to crop yield predictionSociety for Industrial and Applied Mathematics (SIAM): Control & its Applications 2013, Jul 2013, San Diego, United States. pp.CHEN, ⟨10.1137/1.9781611973273.10⟩
Conference papers
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Optimal Control of Crop Irrigation based on the Hamilton-Jacobi-Bellman EquationSIAM Conference on Control and its Applications, Jul 2013, San Diego, United States. pp.21-28, ⟨10.1137/1.9781611973273.4⟩
Conference papers
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Filtrage par noyaux de convolution itératifLes 44 Journées de Statistique, May 2012, Bruxelles, Belgique. pp.CHEN
Conference papers
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SUNLAB: a Functional-Structral Model for Genotypic and Phenotypic Characterization of the Sunflower Crop2012 IEEE 4th International Symposium on Plant Growth Modeling, Simulation, Visualization and Applications, Oct 2012, Shanghai, China. pp.148-151
Conference papers
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Evaluation of the Predictive Capacity of Five Plant Growth Models for Sugar BeetPlant Growth Modeling, Simulation, Visualization and Applications - PMA12, Nov 2012, Shanghai, China. pp.30-37
Conference papers
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Assessment of Parameter Uncertainty in Plant Growth Model Identification2012 IEEE 4th International Symposium on Plant Growth Modeling, Simulation, Visualization and Applications, Oct 2012, China. CHEN, page 43
Conference papers
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Using a hierarchical segmented model to assess the dynamics of leaf appearance in plant populations.14th Applied Stochastic Models and Data Analysis International Conference (ASMDA 2011), Jun 2011, Rome, Italy
Conference papers
inria-00602419v1
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Effects of pod position and its appearance time on pod and seed abortion in winter oilseed rape (Brassica napus L.)13. International Rapeseed Congress, Jun 2011, Pargue, Czech Republic. pp.154-157
Conference papers
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A methodology to study Complex Biophysical Systems with Global Sensitivity AnalysisESREL2011, Antoine Grall, Sep 2011, Troyes, France
Conference papers
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Bayesian Estimation in Functional-Structural Plant Models with Stochastic Organogenesis14th Applied Stochastic Models and Data Analysis International Conference (ASMDA 2011), Jun 2011, Rome, Italy
Conference papers
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Sensitivity analysis of GreenLab model for maize3rd international symposium on Plant Growth and Applications (PMA09), Nov 2010, Beijing, China
Conference papers
inria-00532950v1
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The use of Sensitivity Analysis for the design of Functional Structural Plant ModelsSixth international conference on sensitivity analysis of model output, Jul 2010, Milan, Italy. pp.7768-7769
Conference papers
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Assessment of Non-Linearity in Functional-Structural Plant ModelsFSPM 2010 - 6th International Workshop on Functional-Structural Plant Models, Sep 2010, Davis, California, United States
Conference papers
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Calibration of a probabilistic model of oilseed rape fertility to analyze the inter-variety variability in number of seeds6. International Workshop, Sep 2010, Davis, United States
Conference papers
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A functional-structural model of nitrogen economy within wheat culms after flowering12. ESA Congress, Aug 2010, Montpellier, France
Conference papers
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A symbolic method to compute the probability distribution of the number of pattern occurences in random texts generated by stochastic 0L-systems21st International Meeting on Probabilistic, Combinatorial, and Asymptotic Methods in the Analysis of Algorithms (AofA'10), 2010, Vienna, Austria. pp.473-488, ⟨10.46298/dmtcs.2774⟩
Conference papers
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Stochastic models in floral biology and its application to the study of oilseed rape (Brassica napus L.) fertilityThird International Symposium on Plant Growth Modeling, Simulation, Visualization and Applications (PMA09), Nov 2009, Beijing, China
Conference papers
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Modeling Inter-Individual Variability in Sugar Beet PopulationsThird International Symposium on Plant Growth Modeling, Simulation, Visualization and Applications (PMA09), Nov 2009, Beijing, China
Conference papers
inria-00537646v1
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A stochastic growth model of grapevine with full interaction between environment, trophic competition and plant development.Third International Symposium on Plant Growth Modeling, Simulation, Visualization and Applications (PMA09), Nov 2009, Pékin, China. pp.95-102
Conference papers
inria-00546291v1
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Stochastic models in floral biology and application to the study of oilseed rape fertilityThird International Symposium on Plant Growth Modeling, Simulation, Visualization and Applications (PMA09), Ville service., Nov 2009, Beijing, China. 454 p., ⟨10.1109/PMA.2009.12⟩
Conference papers
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Analysis of the density effects on the source-sink dynamics in Sugar-Beet growthThird International Symposium on Plant Growth Modeling, Simulation, Visualization and Applications (PMA09), Nov 2009, Beijing, China. 454 p
Conference papers
inria-00543137v1
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Towards a continuous approach of functional-structural plant growthThird International Symposium on Plant Growth Modeling, Simulation, Visualization and Applications (PMA09), Nov 2009, Beijing, China. pp.334-340, ⟨10.1109/PMA.2009.69⟩
Conference papers
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Modelling of branch and flower expansion in GreenLab model to account for the whole crop cycle of Winter Oilseed Rape (Brassica Napus L.)Third International Symposium on Plant Growth Modeling, Simulation, Visualization and Applications (PMA09), Ville service., Nov 2009, Beijing, China. 454 p
Conference papers
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Impact of topology on plant functioning : a theoretical analysis based on the GreenLab model equations2009 Plant Growth Modeling And Applications, Nov 2009, Beijing, China. pp.341-348
Conference papers
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A Forest Growth Simulator Based on Functional-Structural Modelling of Individual TreesThird International Symposium on Plant Growth Modeling, Simulation, Visualization and Applications (PMA09), IEEE, Nov 2009, Beijing, China. pp.34-41, ⟨10.1109/PMA.2009.55⟩
Conference papers
inria-00529096v1
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Plants as Combinatorial Structures and ApplicationsThird International Symposium on Plant Growth Modeling, Simulation, Visualization and Applications (PMA09), Nov 2009, Pékin, China. pp.319-326, ⟨10.1109/pma.2009.27⟩
Conference papers
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Simulation of morphological plasticity of Acacia tortilis in response to herbivore attacksThird International Symposium on Plant Growth Modeling, Simulation, Visualization and Applications (PMA09), Saisissez le nom du laboratoire, du service ou du département., Ville service., 2009, Beijing, China. 454 p
Conference papers
inria-00543136v1
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Analyse et modélisation de l'architecture des PlantesPlantes et peuplements virtuels, Institut National de Recherche Agronomique (INRA). UAR Département Adjoint Ecologie des Forêts, Prairies et Milieux Aquatiques (0940)., Mar 2008, Lyon, France
Conference papers
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A Functional-Structural Plant Model-Theory and Applications in AgronomyInternational Symposium on Crop Modeling and Decision Support: ISCMDS 2008, Apr 2008, Nanjing, China
Conference papers
inria-00380520v1
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A morphogenetic crop model for sugar-beet (Beta vulgaris L.)ISCMDS, Apr 2008, Nanjing, China
Conference papers
inria-00336415v3
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Generating Functions of Stochastic L-Systems and Application to Models of Plant DevelopmentFifth Colloquium on Mathematics and Computer Science, 2008, Kiel, Germany. pp.325-338, ⟨10.46298/dmtcs.3574⟩
Conference papers
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Is it possible to simulate rapeseed organ mass in relation to N nutrition ? Calibration of the functional-structural model GREENLAB for the oilseed rape Brassica napus L. during the vegetative phase for two nitrogen nutrition levels12. International Rapeseed Congress, Mar 2007, Wuhan, China
Conference papers
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Adaptation of the GreenLab model for analyzing sink-source relationships in Chinese Pine saplingsPMA06, Plant growth modeling, Simulation, Visualization and Applications, Nov 2006, Beijing, China. pp.236-243
Conference papers
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Optimizing plant growth model parameters for genetic selection based on QTL mappingPlant Growth Modeling, Simulation, Visualization and applications, Nov 2006, Beijing, China. pp.16-21
Conference papers
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Rhythms and alternating patterns in plants as emergent properties of a model of interaction between development and functioningSecond International Symposium on Plant Growth Modeling, Simulation, Visualization and Applications, PMA06, Nov 2006, Beijin, China. ⟨10.1093/aob/mcm171⟩
Conference papers
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Effect of topological and phenological changes on biomass partitioning in Arabidopsis thaliana inflorescence: a preliminary model-based studyPMA06, Plant Growth Modeling, Simulation, Visualization and applications, Nov 2006, Beijing, China. pp.65-69
Conference papers
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A Water Supply Optimization Problem for Plant Growth Based on GreenLab Model7éme Colloque Africain sur la Recherche en Informatique (CARI'04), Nov 2004, Mammamet, Tunisia
Conference papers
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The Influence of Photosynthesis on the Number of Metamers per Growth Unit in GreenLab Model4TH International Workshop on Functional-Structural Plant Models, Jun 2004, Montpellier, France
Conference papers
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Theoretical Study and Numerical Simulation of a Stochastic Model for Plant Growth7th African Conference on Research in Computer Science, Nov 2004, Hammamet, Tunisia
Conference papers
inria-00121499v1
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Neural Networks to Predict Survival from RNA-seq Data in OncologyComputational Methods in Systems Biology, pp.122-140, 2021, ⟨10.1007/978-3-030-85633-5_8⟩
Book sections
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Reachability Design Through Approximate Bayesian ComputationComputational Methods in Systems Biology, pp.207-223, 2019, ⟨10.1007/978-3-030-31304-3_11⟩
Book sections
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Modèles Dynamiques de la Croissance des Plantes : Succès et DéfisPotentiels de la science pour une agriculture durable, Académie d'Agriculture de France. Edition: Jean-Claude Pernollet., , 2018
Book sections
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Méthodes inverses et identification paramétrique de modèles d'architecture végétalePhilippe de Reffye; Marc Jaeger; Daniel Barthélémy; François Houllier. Architecture et croissance des plantes. Modélisation et applications, , 2016, Synthèses, 978-27592-2622-1
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Le passage de la plante au peuplementPhilippe de Reffye; Marc Jaeger; Daniel Barthélémy; François Houllier. Architecture et croissance des plantes. Modélisation et croissances des plantes, 2016, Synthèses, 978-27592-2622-1
Book sections
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Parameterization of plant growth models to characterize genotype by environment interactions: a methodology adapted to breeding programsHalford, N. and Semenov, M. Aspects of Applied Biology 107: Systems Approaches to Crop Improvement, The Association of Applied Biologists, pp.27-35, 2011
Book sections
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Nitrogen acquisition and utilization by crops: review of different approaches and proposition of a mechanistic modelingThird International Symposium on Plant Growth Modeling, Simulation, Visualization and Applications: proceedings, 9-13 November 2009, Beijing, China, IEEE Computer Society, 454 p., 2010, Plant Growth Modeling, Simulation, Visualization and Applications, 978-0-7695-3988-1
Book sections
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A Functional-Structural Plant Model: Theories and its Applications in AgronomyCao, W. and White, J. and Wang, E. Crop Modeling and Decision Support, Springer, pp.148-160, 2009, 978-3-642-01131-3. ⟨10.1007/978-3-642-01132-0_16⟩
Book sections
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Plant growth modelsJorgensen, S. E., Fath, B. D. Encyclopedia of Ecology, Elsevier, pp.2824-2838, 2008
Book sections
halsde-00341036v1
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Modélisation et simulation de l'architecture et de la production végétalesFrancis Hallé. Aux origines des plantes : des plantes anciennes à la botanique du XXIe siècle, Fayard, pp.184-227, 2008
Book sections
halsde-00341034v1
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Combining Similarity and Adversarial Learning to Generate Visual Explanation: Application to Medical Image Classification2021
Preprints, Working Papers, ...
hal-03127330v1
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Mean field approximation of a heterogeneous population of plants in competition2019
Preprints, Working Papers, ...
hal-02147039v1
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Irrigation Optimization by Modeling of Plant-Soil Interaction2011
Preprints, Working Papers, ...
hal-00606408v1
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A symbolic method to analyse patterns in plant structure whose organogenesis is driven by a multitype branching process2010
Preprints, Working Papers, ...
inria-00546309v1
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Testing variance components in nonlinear mixed effects models.[Technical Report] 2017-1, auto-saisine. 2017, pp.24
Reports
hal-01603158v1
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Computing the moments of probability distributions for branching processes[Research Report] RR-6728, INRIA. 2008, pp.23
Reports
inria-00340055v1
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A Markovian framework to formalize stochastic L-systems and application to models of plant development[Research Report] RR-6830, INRIA. 2008, pp.24
Reports
inria-00359515v1
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A Positive MUSCL Scheme for TriangulationsRR-3465, INRIA. 1998
Reports
inria-00073225v1
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Dynamic System of Plant GrowthMathematics [math]. Université Montpellier II - Sciences et Techniques du Languedoc, 2009
Habilitation à diriger des recherches
tel-00377462v2
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