Philippe ANDREY
Publications
Publications
Model-based reconstruction of whole organ growth dynamics reveals invariant patterns in leaf morphogenesisFirst European Conference From Genes to Plant Architecture: the Shoot Apical Meristem in All its States, INRAE; INRIA, Nov 2023, Poitiers, France |
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Modeling meiotic prophase I chromosome movements in Arabidopsis thaliana: what does it take to move a chromosome?Postdocs and Students Meiosis Workshop 2023, Thomas Robert and Chloé Girard, Dec 2023, Montpellier, France |
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Beyond singularity in spatial analyses of plant cells and tissues7th International Plant Computational Biology Workshop, Sep 2023, Cambridge, United Kingdom |
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Computational approaches to decipher cell division patterns in plant embryo6th International Plant Computational Biology Workshop, Aug 2022, Lyon, France |
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Computational analysis of cell division patterns in the shoot apical meristemFirst European Conference From Genes to Plant Architecture: the Shoot Apical Meristem in All its States, Nov 2022, Poitiers, France |
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Statistical modeling of spatial interactions in biological patterns, with application to plant nuclear organizationQuantitative BioImaging Conference, Jan 2020, Oxford, United Kingdom |
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Statistical multi-scale atlasing of leaf morphogenesis7. International Workshop on Image Analysis Methos for the Plant Sciences 2019 (IAMPSI1́9), Jul 2019, Lyon, France |
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Statistical modeling of spatial interactions: new insights into the spatial organization of plant heterochromatinINDEPTH Cost Action Meeting: Impact of Chromatin Domains on Plant Phenotypes, Dec 2019, El Escorial, Spain |
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Mapping and comparing spatial distributions in biological imagingQuantitative BioImaging Conference, Jan 2019, Rennes, France |
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Deciphering cell division patterns in plant early embryogenesis by combining 3D image analysis and computer modellingPlant Growth and Form: International Symposium on Quantitative Plant Morphodynamics, Sep 2019, Heidelberg, Germany |
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Spatiotemporal quantification of 3D cellular parameters during leaf morphogenesisQuantitative BioImaging Conference, Jan 2019, Rennes, France |
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Accurate dating of organs during growth can unmask invariant developmental patterns: illustration with plant leaf morphogenesis7. International Workshop on Image Analysis Methos for the Plant Sciences 2019 (IAMPSI1́9), Jul 2019, Lyon, France |
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Surface parameterization and registration for statistical multiscale atlasing of organ developmentIEEE Conference on Computer Vision and Pattern Recognition (CVPR) Workshops, Jun 2019, Long Beach, Californie, United States. ⟨10.1109/CVPRW.2019.00022⟩ |
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Combining 3D image analysis and computer modeling to understand cell division patterns in plant early embryogenesisQuantitative BioImaging Conference, Jan 2019, Rennes, France |
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Image based modeling of leaf developmentQuantitative BioImaging Conference 2019, Jan 2019, Rennes, France |
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Dynamic atlasing of gene expression domains from individual images16. IEEE International Symposium on Biomedical Imaging 2019 (ISBI1́9), Apr 2019, Venise, Italy. ⟨10.1109/ISBI.2019.8759188⟩ |
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Image analysis and computer modelling of cell divisions in plant early embryogenesisPhycomorph EU Cost Action Workshop: “Imaging seaweed cells and tissues”, Nov 2018, Roscoff, France |
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Towards a spatio-temporal atlas of 3D cellular parameters during leaf morphogenesis16. IEEE International Conference on Computer Vision (ICCV 2017), Oct 2017, Venise, Italy. 3212 p., ⟨10.1109/ICCVW.2017.14⟩ |
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Modeling 3D cell division patterns in plant early embryogenesisCLIPS 2017 - Multiscale live imaging in human, animal and plant health, Sep 2017, Gif-sur-Yvette, France |
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Chronic electrical muscle stimulation (EMS) following nerve injury and repair in Sprague Dawley rats does not lead to preferential reinnervation of target musclesAnnual meeting of the society for neuroscience, Nov 2016, San Diego, United States |
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Spatial reorganization of Proopiomelanocortin (POMC)-expressing Neurons in the Arcuate Nucleus of POMC-EGFP Mice Resistant or Prone to ObesityExperimental Biology Meeting, Apr 2016, San Diego, Californie, United States. pp.2 |
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Spatial reorganization of Proopiomelanocortin (POMC)-expressing Neurons in the Arcuate Nucleus of POMC-EGFP Mice Resistant or Prone to ObesityExperimental Biology 2016 Meeting, Apr 2016, San Diego, United States. Supplement 405.8 |
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Statistical comparison of 3D point pattern distributionsSpatial Statistics: Emerging Patterns, Jun 2015, Avignon, France |
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Modeling spatial distributions and patterns in biological imagingMini-symposium BioImage Informatics, GDR2588. FRA., Nov 2015, Paris, France |
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Spatial 3D modelling of nuclear architecture: application to A. thaliana leaf cell nucleiQuantitative BioImaging Conference, Jan 2015, Paris, France |
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Computational modelling of cell division patterns during plant early embryogenesisInternational Workshop on Image Analysis Methods for the Plant Sciences (IAMPS), Sep 2015, Louvain-la-Neuve, Belgium |
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A spatial statistical approach to analyze and model nuclear architectureInternational Workshop on Image Analysis Methods for the Plant Sciences (IAMPS), Sep 2015, Louvain-la-Neuve, Belgium |
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P186: Différences d’organisation spatiale des neurones pro-opiomélanocortine (POMC) dans le noyau arqué de l’hypothalamus de souris sensibles ou résistantes à l’obésité12es Journées Francophones de Nutrition, Dec 2014, Bruxelles, Belgium. pp.S165, ⟨10.1016/S0985-0562(14)70828-3⟩ |
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De l’image numérique à la donnée scientifique: Qu’est-ce qu’une image numérique?Ecole Image INRA: De l'image numérique à la donnée scientifique : quelles démarches d'analyse et de traitement d'images ?, 2014, Lyon, France |
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Statistical comparison of the spatial organizations of punctual structures using 3D point density mappingInternational Workshop on Image Analysis Methods for the Plant Sciences, Sep 2013, Nottingham, United Kingdom |
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Statistical groupwise comparison of spatial point patterns in biological imaging10. International Symposium on Biomedical Imaging - From Nano to Macro, Institute of Electrical and Electronics Engineers (IEEE). USA., Apr 2013, San Francisco, United States. 1519 p., ⟨10.1109/ISBI.2013.6556510⟩ |
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Statistical differences between three-dimensional intensity maps computed from replicated point patterns7 th International Conference on Stereology, Spatial Statistics and Stochastic Geometry, Jun 2012, Prague, Czech Republic |
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Traitement central d'odeurs chez le rat vigile révélé par IRM améliorée par l'agent de contraste manganèse (MEMRI)1er congrès de la SFRMBM (Société Française de Résonance Magnétique en Biologie & Médecine), Mar 2012, Marseille, France |
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A three-dimensional modelling approach for data integration and statistical analysis of spatial distributions in cellular imagingInternational Workshop on Image Analysis, Sep 2012, Nottingham, United Kingdom |
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Nutrient-dependent neuronal activation patterns in the nucleus of the solitary tract, as revealed by a statistical three-dimensional modeling approach7th Forum of European Neuroscience, Jul 2010, Amsterdam, Netherlands |
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A three-dimensional modeling software for inter-individual and inter-modality data integration in small animal neuroimaging7th Forum of European Neuroscience, Jul 2010, Amsterdam, Netherlands |
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Modélisation de la dynamique temporelle des signaux calciques dans l'embryon précoce de souris3. Journées d'Animation Scientifique du Département de Physiologie Animale et Système d'Elevage, Oct 2009, Tours, France |
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Architecture nucléaire : modélisation spatiale et application à la compréhension des mécanismes de différenciationColloque interne des IFR144, 115 et 87, Apr 2009, Gif-sur-Yvette, France. n.p |
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Three-dimensional statistical modeling of neuronal populations : illustration with spatial localization of supernumerary neurons in the locus coeruleus of quaking mutant mice.9. Colloque de la Société des Neurosciences, May 2009, Bordeaux, France. ⟨10.1002/cne.21954⟩ |
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La modification du rapport NADH/NAD+ cytosolique durant la fécondation modifie la croissance des animaux et le poids de l'adulte chez la souris3. Journées d’Animation Scientifique du Département de Physiologie Animale et Systèmes d’Elevage, Oct 2009, Tours, France |
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Activation maps in the nucleus of the solitary tract (NTS) in response to internal stimuli16. Annual meeting of the Society for the Study of Ingestive Behavior, Jul 2008, Paris, France |
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Spatial normalisation of three-dimensional neuroanatomical models using shape registration, averaging, and warping5. IEEE International Symposium on Biomedical imaging - from Nano to Macro, May 2008, Paris, France |
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Activation maps in the nucleus of the solitary tract (NTS) in response to internal stimuliExperimental Biology 2008, Apr 2008, San Diego, United States |
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Dynamiques calciques de la fécondation: couplage entre approche expérimentale et de modélisation pour identifier l'origine des effets à long terme2. Journées de Restitution des Projets financés sur Crédits Incitatifs en 2006 et 2007, Nov 2008, Tours, France |
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A new filter for spot extraction in N-dimensional biological imaging5. IEEE International Symposium on Biomedical imaging - from Nano to Macro, May 2008, Paris, France |
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Statistical three-dimensional estimation and mapping of neuronal distributions8e Colloque de la Société des Neurosciences, May 2007, Montpellier, France |
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Activity mappings in olfactory bulb of newborn rabbits elicited by odor stimulation using quantitative manganese enhanced MRIAnnual Meeting of the International Society for Magnetic Resonance in Medicine (ISMRM) and of the European Society for Magnetic Resonance in Medicine and Biology (ESMRMB), May 2007, Berlin, Germany |
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Algorithm and software for the reconstruction, integration, and statistical analysis of 3D models in neuroanatomy8e Colloque de la Société des Neurosciences, May 2007, Montpellier, France |
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Cartographie statistique de populations de neuronesAromagri 2007, Oct 2007, Jouy-en-Josas, France. 1 p |
Towards the modelling of chromosome movements during meiotic prophase I in Arabidopsis thalianaPhysics of Life 2025, Mar 2025, Harrogate, United Kingdom |
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Towards the modeling of chromosome movements during meiotic prophase I in Arabidopsis thalianaIJPB Symposium 2024. Plant Modeling: Opportunities and Challenges, May 2024, Versailles, France |
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Training a deep neural network to learn 3D division rules7th International Plant Computational Biology Workshop, Sep 2023, Cambridge (Angleterre), United Kingdom |
BIP, a new software design for batch analysis of biological imagesFirst European Conference From Genes to Plant Architecture: the Shoot Apical Meristem in All its States, Nov 2022, Poitiers, France. |
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Spatial normalisation of three-dimensional neuroanatomical models using shape registration5. IEEE International Symposium on Biomedical Imaging (ISBI'08) : From Nano to Macro, May 2008, Paris, France. n.p., 2008 |
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Activity mappings in olfactory bulb of newborn rabbits elicited by odor stimulation using quantitative manganese enhanced MRIJoint Annual Meeting ISMRM-ESMRM, May 2007, Berlin, Germany. 1 p., 2007 |
Reconstructing the three-dimensional surface of a branching and merging biological structure from a stack of coplanar contours8. IEEE International Symposium on Biomedical Imaging (ISBI 2011), Mar 2011, Chicago, United States. IEEE Press, 2011, 2011 IEEE International Symposium on Biomedical Imaging: from Nano to Macro, 978-1-4244-4127-3. ⟨10.1109/ISBI.2011.5872479⟩ |
A method for testing Random spatial models on nuclear object distributionsPlant chromatin dynamics : Methods and protocols, 1675, Springer Protocol, Humana Press, 2018, Methods in Molecular Biology, 978-1-4939-7317-0. ⟨10.1007/978-1-4939-7318-7_29⟩ |
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Designing Image Analysis Pipelines in Light Microscopy: A Rational ApproachLight Microscopy, 1563, SPRINGER, pp.23, 2017, Methods in Molecular Biology, 978-1-4939-6810-7; 978-1-4939-6808-4. ⟨10.1007/978-1-4939-6810-7_13⟩ |
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A method for testing random spatial model on nuclear object distributionsMethods in molecular biology: Plant chromatin dynamics, Springer International Publishing, 2017 |
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Actin Counters Geometry to Guide Plant Cell Division2025 |
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Deep learning of geometrical cell division rules2025 |
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Large-scale analysis and computer modeling reveal hidden regularities behind variability of cell division patterns in Arabidopsis thaliana embryogenesis2022 |
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Spatial modeling of telomere intra-nuclear distribution reveals non-random organization that varies during cell cycle and depends on LAP2 and BAF2024 |
Analyse et modélisation d’organisations spatiales en imagerie biologiqueSciences du Vivant [q-bio]. Université Pierre et Marie Curie - Paris 6, 2015 |