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COVID-19 Pandemic: Escape of Pathogenic Variants and MHC Evolution
Pierre Pontarotti
,
Julien Paganini
Journal articles
hal-03592872v1
|
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HLA-H*02:07 Is a Membrane-Bound Ligand of Denisovan Origin That Protects against Lysis by Activated Immune Effectors
Lucas Hubert
,
Julien Paganini
,
Christophe Picard
,
Jacques Chiaroni
,
Laurent Abi-Rached
Journal articles
hal-03471956v1
|
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RadA, a Key Gene of the Circadian Rhythm of Escherichia coli
Aissatou Bailo Diallo
,
Soraya Mezouar
,
Asma Boumaza
,
Oksana Fiammingo
,
Benjamin Coiffard
Journal articles
hal-03684665v1
|
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Gene expression plasticity and frontloading promote thermotolerance in Pocillopora corals
K. Brener-Raffalli
,
Jeremie Vidal-Dupiol
,
M. Adjeroud
,
Olivier REY
,
P. Romans
Journal articles
hal-03239787v1
|
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Species and population genomic differentiation in Pocillopora corals (Cnidaria, Hexacorallia)
Didier Aurelle
,
Marine Pratlong
,
Nicolas Oury
,
Anne Haguenauer
,
Pauline Gélin
Journal articles
hal-03774130v1
|
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HLA-H*02:07 Is a Membrane-Bound Ligand of Denisovan Origin That Protects against Lysis by Activated Immune Effectors
Lucas Hubert
,
Julien Paganini
,
Christophe Picard
,
Jacques Chiaroni
,
Laurent Abi-Rached
Journal articles
hal-03869640v1
|
|
The piggyBac-derived protein 5 (PGBD5) transposes both the closely and the distantly related piggyBac-like elements Tcr-pble and Ifp2
Laura Helou
,
Linda Beauclair
,
Hugues Dardente
,
Benoit Piegu
,
Louis Tsakou-Ngouafo
Journal articles
hal-03149600v1
|
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Separate the wheat from the chaff: genomic scan for local adaptation in the red coral Corallium rubrum
M. Pratlong
,
A. Haguenauer
,
K. Brener
,
G. Mitta
,
E. Toulza
Journal articles
hal-03454660v2
|
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Could β-Lactam Antibiotics Block Humoral Immunity?
Cléa Melenotte
,
Pierre Pontarotti
,
Lucile Pinault
,
Jean-Louis Mège
,
Christian Devaux
Journal articles
hal-03366413v1
|
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Self-Peptidome Variation Shapes Individual Immune Responses
Pierre Pontarotti
,
Laurent Abi-Rached
,
Jung-Hua Yeh
,
Julien Paganini
Journal articles
hal-03366604v1
|
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Diverse Trajectories Drive the Expression of a Giant Virus in the Oomycete Plant Pathogen Phytophthora parasitica
Sihem Hannat
,
Pierre Pontarotti
,
Philippe Colson
,
Marie-Line Kuhn
,
Eric Galiana
Journal articles
hal-03308205v1
|
|
Could β-Lactam Antibiotics Block Humoral Immunity?
Cléa Melenotte
,
Pierre Pontarotti
,
Lucile Pinault
,
Jean-Louis Mège
,
Christian Devaux
Journal articles
hal-03370420v1
|
|
Self-Peptidome Variation Shapes Individual Immune Responses
Pierre Pontarotti
,
Laurent Abi-Rached
,
Jung-Hua Yeh
,
Julien Paganini
Journal articles
hal-03370438v1
|
|
A metallo-β-lactamase enzyme for internal detoxification of the antibiotic thienamycin
Seydina Diene
,
Lucile Pinault
,
Sophie Alexandra Baron
,
Saïd Azza
,
Nicholas Armstrong
Journal articles
hal-03281982v1
|
|
Search for MHC/TCR-Like Systems in Living Organisms
Julien Paganini
,
Pierre Pontarotti
Journal articles
hal-03370044v1
|
|
HLA-H*02:07 Is a Membrane-Bound Ligand of Denisovan Origin That Protects against Lysis by Activated Immune Effectors
Lucas Hubert
,
Julien Paganini
,
Christophe Picard
,
Jacques Chiaroni
,
Laurent Abi-Rached
Journal articles
hal-03817969v1
|
|
A metallo-β-lactamase enzyme for internal detoxification of the antibiotic thienamycin
Seydina Diene
,
Lucile Pinault
,
Sophie Alexandra Baron
,
Saïd Azza
,
Nicholas Armstrong
Journal articles
hal-03366566v1
|
|
A metallo-β-lactamase enzyme for internal detoxification of the antibiotic thienamycin
Seydina M Diene
,
Lucile Pinault
,
Sophie Alexandra Baron
,
Saïd Azza
,
Nicholas Armstrong
Journal articles
hal-03371030v1
|
|
Search for MHC/TCR-Like Systems in Living Organisms
Julien Paganini
,
Pierre Pontarotti
Journal articles
hal-03280513v1
|
|
Dual RNase and β-lactamase Activity of a Single Enzyme Encoded in Archaea
Seydina Diene
,
Lucile Pinault
,
Nicholas Armstrong
,
Said Azza
,
Vivek Keshri
Journal articles
hal-03366589v1
|
|
Origins of the RAG Transposome and the MHC
Louis Tsakou-Ngouafo
,
Julien Paganini
,
Jim Kaufman
,
Pierre Pontarotti
Journal articles
hal-02868436v1
|
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A protein of the metallo-hydrolase/oxidoreductase superfamily with both beta-lactamase and ribonuclease activity is linked with translation in giant viruses
Philippe Colson
,
Lucile Pinault
,
Said Azza
,
Nicholas Armstrong
,
Eric Chabriere
Journal articles
hal-03371039v1
|
|
A protein of the metallo-hydrolase/oxidoreductase superfamily with both beta-lactamase and ribonuclease activity is linked with translation in giant viruses
Philippe Colson
,
Lucile Pinault
,
Said Azza
,
Nicholas Armstrong
,
Eric Chabriere
Journal articles
hal-03149225v1
|
|
A protein of the metallo-hydrolase/oxidoreductase superfamily with both beta-lactamase and ribonuclease activity is linked with translation in giant viruses
Philippe Colson
,
Lucile Pinault
,
Said Azza
,
Nicholas Armstrong
,
Eric Chabriere
Journal articles
hal-03366581v1
|
|
Origins of the RAG Transposome and the MHC
Louis Tsakou-Ngouafo
,
Julien Paganini
,
Jim Kaufman
,
Pierre Pontarotti
Journal articles
hal-03161998v1
|
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Identification of RAG-like transposons in protostomes suggests their ancient bilaterian origin
Eliza C Martin
,
Célia Vicari
,
Louis Tsakou-Ngouafo
,
Pierre Pontarotti
,
Andrei J Petrescu
Journal articles
hal-03047226v1
|
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Promiscuous Enzyme Activity as a Driver of Allo and Iso Convergent Evolution, Lessons from the β-Lactamases
Vivek Keshri
,
Eric Chabrière
,
Lucile Pinault
,
Philippe Colson
,
Seydina M Diene
Journal articles
hal-03047280v1
|
|
Origins of the RAG Transposome and the MHC
Louis Tsakou-Ngouafo
,
Julien Paganini
,
Jim Kaufman
,
Pierre Pontarotti
Journal articles
hal-03371051v1
|
|
Dual RNase and β-lactamase Activity of a Single Enzyme Encoded in Archaea
Seydina M Diene
,
Lucile Pinault
,
Nicholas Armstrong
,
Said Azza
,
Vivek Keshri
Journal articles
hal-03047404v1
|
|
An Integrative Database of β-Lactamase Enzymes: Sequences, Structures, Functions, and Phylogenetic Trees
Vivek Keshri
,
Seydina Diene
,
Adrien Estienne
,
Justine Dardaillon
,
Olivier Chabrol
Journal articles
hal-02159541v1
|
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The functional convergence of antibiotic resistance in β‐lactamases is not conferred by a simple convergent substitution of amino acid
Vivek Keshri
,
Kevin Arbuckle
,
Olivier Chabrol
,
Jean‐marc Rolain
,
Didier Raoult
Journal articles
hal-03047294v1
|
|
HLAIb worldwide genetic diversity: New HLA-H alleles and haplotype structure description
Julien Paganini
,
Laurent Abi-Rached
,
Philippe Gouret
,
Pierre Pontarotti
,
Jacques Chiaroni
Journal articles
hal-02137704v1
|
|
Human metallo-β-lactamase enzymes degrade penicillin
Seydina M Diene
,
Lucile Pinault
,
Vivek Keshri
,
Nicholas Armstrong
,
Saber Khelaifia
Journal articles
hal-03047415v1
|
|
Transposon molecular domestication and the evolution of the RAG recombinase
Yuhang Zhang
,
Tat Cheung Cheng
,
Guangrui Huang
,
Qingyi Lu
,
Marius Surleac
Journal articles
hal-02262562v1
|
|
HLAIb worldwide genetic diversity: new HLA-H alleles and haplotype structure description
Julien Paganini
,
Laurent Abi-Rached
,
Philippe Gouret
,
Pierre Pontarotti
,
Jacques Chiaroni
Journal articles
hal-03371942v1
|
|
Human metallo-β-lactamase enzymes degrade penicillin
Seydina Diene
,
Lucile Pinault
,
Vivek Keshri
,
Nicholas Armstrong
,
Saber Khelaifia
Journal articles
hal-02479402v1
|
|
The functional convergence of antibiotic resistance in β‐lactamases is not conferred by a simple convergent substitution of amino acid
Vivek Keshri
,
Kevin Arbuckle
,
Olivier Chabrol
,
Jean‐marc Rolain
,
Didier Raoult
Journal articles
hal-02263608v1
|
|
Why do arthropods secrete β-lactams?
Pierre Pontarotti
,
Didier Raoult
Journal articles
hal-02262479v1
|
|
Phylogenomic Analysis of β-Lactamase in Archaea and Bacteria Enables the Identification of Putative New Members
Vivek Keshri
,
Arup Panda
,
Anthony Levasseur
,
Jean-Marc Rolain
,
Pierre Pontarotti
Journal articles
hal-02057304v1
|
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Evolutionary and expression analyses reveal a pattern of ancient duplications and functional specializations in the diversification of the Downstream of Kinase (DOK) genes
Geoffrey Guittard
,
Pierre Pontarotti
,
Samuel Granjeaud
,
Magda Rodrigues
,
Laurent Abi-Rached
Journal articles
inserm-02148721v1
|
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Immune diversity sheds light on missing variation in worldwide genetic diversity panels
Laurent Abi-Rached
,
Philippe Gouret
,
Jung-Hua Yeh
,
Julie Di Cristofaro
,
Pierre Pontarotti
Journal articles
hal-01931053v1
|
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Detecting the molecular basis of phenotypic convergence
Olivier Chabrol
,
Manuela Royer-Carenzi
,
Pierre Pontarotti
,
Gilles Didier
Journal articles
hal-01532965v1
|
|
Amphioxus functional genomics and the origins of vertebrate gene regulation
Ferdinand Marletaz
,
Panos N. Firbas
,
Ignacio Maeso
,
Juan J. Tena
,
Ozren Bogdanovic
Journal articles
hal-02000511v1
|
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A Phylogenomic Study of Acanthamoeba polyphaga Draft Genome Sequences Suggests Genetic Exchanges With Giant Viruses
Nisrine Chelkha
,
Anthony Levasseur
,
Pierre Pontarotti
,
Didier Raoult
,
Bernard La Scola
Journal articles
hal-01910335v1
|
|
In silico analysis of Schmidtea mediterranea TIR domain-containing proteins
Landry Laure Tsoumtsa
,
Seynabou Sougoufora
,
Cedric Torre
,
Emmanuel Lemichez
,
Pierre Pontarotti
Journal articles
hal-01858942v1
|
|
Genome-wide analysis of horizontally acquired genes in the genus Mycobacterium
Arup Panda
,
Michel Drancourt
,
Tamir Tuller
,
Pierre Pontarotti
Journal articles
hal-02000575v1
|
|
Ancestrality and Mosaicism of Giant Viruses Supporting the Definition of the Fourth TRUC of Microbes
Philippe Colson
,
Anthony Levasseur
,
Bernard La Scola
,
Vikas Sharma
,
Arshan Nasir
Journal articles
hal-01948086v1
|
|
Identification of constraints influencing the bacterial genomes evolution in the PVC super-phylum
Sandrine Pinos
,
Pierre Pontarotti
,
Didier Raoult
,
Vicky Merhej
Journal articles
hal-01521244v1
|
|
MimiLook: A Phylogenetic Workflow for Detection of Gene Acquisition in Major Orthologous Groups of Megavirales
Sourabh Jain
,
Arup Panda
,
Philippe Colson
,
Didier Raoult
,
Pierre Pontarotti
Journal articles
hal-01573785v1
|
|
Evolutionary and polymorphism analyses reveal the central role of BTN3A2 in the concerted evolution of the BTN3 gene family
Hassnae Afrache
,
Pierre Pontarotti
,
Laurent Abi-Rached
,
Daniel Olive
Journal articles
hal-01785307v1
|
|
Convergent evolution of the adaptive immune response in jawed vertebrates and cyclostomes: An evolutionary biology approach based study
Jose Ricardo Morales Poole
,
Julien Paganini
,
Pierre Pontarotti
Journal articles
hal-01622250v1
|
|
Monophyly of Anthozoa (Cnidaria): why do nuclear and mitochondrial phylogenies disagree?
Marine Pratlong
,
Corinne Rancurel
,
Pierre Pontarotti
,
D. Aurelle
Journal articles
hal-01474009v1
|
|
The RAG transposon is active through the deuterostome evolution and domesticated in jawed vertebrates
Jose Ricardo Morales Poole
,
Sheng Feng Huang
,
Anlong Xu
,
Justine Bayet
,
Pierre Pontarotti
Journal articles
hal-01598270v1
|
|
The Rhizome of Lokiarchaeota Illustrates the Mosaicity of Archaeal Genomes
Anthony Levasseur
,
Vicky Merhej
,
Emeline Baptiste
,
Vikas Sharma
,
Pierre Pontarotti
Journal articles
hal-01730435v1
|
|
Discovery of an Active RAG Transposon Illuminates the Origins of V(D)J Recombination
Shengfeng Huang
,
Xin Tao
,
Shaochun Yu
,
Yuhang Yu
,
Peiyi Li
Journal articles
hal-01486940v1
|
|
MIMIVIRE is a defence system in mimivirus that confers resistance to virophage
Anthony Levasseur
,
Meriem Bekliz
,
Eric Chabrière
,
Pierre Pontarotti
,
Bernard La Scola
Journal articles
hal-01306166v1
|
|
Genomic resources and their influence on the detection of the signal of positive selection in genome scans
S. Manel
,
Charles Perrier
,
Marine Pratlong
,
Laurent Abi-Rached
,
Julien Paganini
Journal articles
hal-02336047v1
|
|
Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database.
Jérémy Pasquier
,
Cédric Cabau
,
Thuy Thao Vi Nguyen
,
Elodie Jouanno
,
Dany Severac
Journal articles
hal-01487023v1
|
|
Origin and Evolution of Rickettsial Plasmids
Khalid El Karkouri
,
Pierre Pontarotti
,
Didier Raoult
,
Pierre-Edouard Fournier
Journal articles
hal-01459537v1
|
|
Mimivirus inaugurated in the 21st century the beginning of a reclassification of viruses
Vikas Sharma
,
Philippe Colson
,
Pierre Pontarotti
,
Didier Raoult
Journal articles
hal-01308970v1
|
|
Compartmentalization in PVC super-phylum: evolution and impact
Sandrine Pinos
,
Pierre Pontarotti
,
Didier Raoult
,
Jean Pierre Baudoin
,
Isabelle Pagnier
Journal articles
hal-01455631v1
|
|
Pithovirus sibericum, a new bona fide member of the "Fourth TRUC" club
Vikas Sharma
,
Philippe Colson
,
Olivier Chabrol
,
Pierre Pontarotti
,
Didier Raoult
Journal articles
hal-01304145v1
|
|
The red coral (Corallium rubrum) transcriptome: a new resource for population genetics and local adaptation studies
M. Pratlong
,
A. Haguenauer
,
O. Chabrol
,
C. Klopp
,
P. Pontarotti
Journal articles
hal-01445149v1
|
|
Welcome to pandoraviruses at the 'Fourth TRUC' club
Vikas Sharma
,
Philippe Colson
,
Olivier Chabrol
,
Patrick Scheid
,
Pierre Pontarotti
Journal articles
hal-01211489v1
|
|
Mycobacteriophage-drived diversification of Mycobacterium abscessus
Mohamed Sassi
,
Philippe Gouret
,
Olivier Chabrol
,
Pierre Pontarotti
,
Michel Drancourt
Journal articles
hal-01304426v1
|
|
The genome of the white-rot fungus [i]Pycnoporus cinnabarinus[/i]: a basidiomycete model with a versatile arsenal for lignocellulosic biomass breakdown
Anthony Levasseur
,
Anne Lomascolo
,
Olivier Chabrol
,
Francisco J Ruiz-Dueñas
,
Eva Boukhris-Uzan
Journal articles
hal-01204353v1
|
|
African Relapsing Fever Borreliae Genomospecies Revealed by Comparative Genomics
Haitham Elbir
,
Laurent Abi-Rached
,
Pierre Pontarotti
,
Niyaz Yoosuf
,
Michel Drancourt
Journal articles
hal-01785565v1
|
|
The Proto-MHC of Placozoans, a Region Specialized in Cellular Stress and Ubiquitination/Proteasome Pathways
Jaanus Suurväli
,
Luc Jouneau
,
Dominique Thepot Thépot
,
Simona Grusea
,
Pierre Pontarotti
Journal articles
hal-01633156v1
|
|
DNA-Dependent RNA Polymerase Detects Hidden Giant Viruses in Published Databanks
Vikas Sharma
,
Philippe Colson
,
Roch Giorgi
,
Pierre Pontarotti
,
Didier Raoult
Journal articles
hal-01308942v1
|
|
Choosing the best ancestral character state reconstruction method.
Manuela Royer-Carenzi
,
Pierre Pontarotti
,
Gilles Didier
Journal articles
hal-00830797v1
|
|
To Tree or Not to Tree? Genome-Wide Quantification of Recombination and Reticulate Evolution during the Diversification of Strict Intracellular Bacteria
Antonio Hernández-López
,
Olivier Chabrol
,
Manuela Royer-Carenzi
,
Vicky Merhej
,
Pierre Pontarotti
Journal articles
hal-01107523v1
|
|
An automated approach for the identification of horizontal gene transfers from complete genomes reveals the rhizome of Rickettsiales.
Phuong Thi Le
,
Hemalatha Golaconda Ramulu
,
Laurent Guijarro
,
Julien Paganini
,
Philippe Gouret
Journal articles
inserm-00789846v1
|
|
The rhizome of life: what about metazoa?
Hemalatha G Ramulu
,
Didier Raoult
,
Pierre Pontarotti
Journal articles
hal-00831099v1
|
|
Peptidoglycan: a post-genomic analysis.
Caroline Cayrou
,
Bernard Henrissat
,
Philippe Gouret
,
Pierre Pontarotti
,
Michel Drancourt
Journal articles
hal-00831025v1
|
|
The butyrophilin (BTN) gene family: from milk fat to the regulation of the immune response.
Hassnae Afrache
,
Philippe Gouret
,
Shanaiz Ainouche
,
Pierre Pontarotti
,
Daniel Olive
Journal articles
hal-00831095v1
|
|
Oocyte-somatic cells interactions, lessons from evolution.
Cathy Charlier
,
Jérôme Montfort
,
Olivier Chabrol
,
Daphné Brisard
,
Thuy Thao Vi Nguyen
Journal articles
hal-00753310v1
|
|
The chordate proteome history database.
Anthony Levasseur
,
Julien Paganini
,
Jacques Dainat
,
Julie D Thompson
,
Olivier Poch
Journal articles
hal-00831115v1
|
|
The genealogic tree of mycobacteria reveals a long-standing sympatric life into free-living protozoa.
Otmane Lamrabet
,
Vicky Merhej
,
Pierre Pontarotti
,
Didier Raoult
,
Michel Drancourt
Journal articles
hal-00831103v1
|
|
Controversies in modern evolutionary biology: the imperative for error detection and quality control.
Francisco Prosdocimi
,
Benjamin Linard
,
Pierre Pontarotti
,
Olivier Poch
,
Julie Thompson
Journal articles
inserm-00682055v1
|
|
GLADX: an automated approach to analyze the lineage-specific loss and pseudogenization of genes.
Jacques Dainat
,
Julien Paganini
,
Pierre Pontarotti
,
Philippe Gouret
Journal articles
hal-00831091v1
|
|
Correction : GPR50 is the mammalian ortholog of Mel1c: Evidence of rapid evolution in mammals
Laurence Dufourny
,
A. Levasseur
,
Martine Migaud
,
I. Callebaut
,
P. Pontarotti
Journal articles
hal-01129620v1
|
|
Contribution of lateral gene transfers to the genome composition and parasitic ability of root-knot nematodes.
Julien Paganini
,
Amandine Campan-Fournier
,
Martine da Rocha
,
Philippe Gouret
,
Pierre Pontarotti
Journal articles
hal-00831026v1
|
|
FunGene-DB: a web-based tool for Polyporales strains authentication.
David Navarro
,
Anne Favel
,
Olivier Chabrol
,
Pierre Pontarotti
,
Mireille Haon
Journal articles
hal-00831085v1
|
|
The Rhizome of Life: The Sympatric Rickettsia felis Paradigm Demonstrates the Random Transfer of DNA Sequences
Vicky Merhej
,
Cedric Notredame
,
Manuela Royer-Carenzi
,
Pierre Pontarotti
,
Didier Raoult
Journal articles
hal-01105200v1
|
|
Compound Poisson Approximation and Testing for Gene Clusters with Multigene Families
Simona Grusea
,
Etienne Pardoux
,
Olivier Chabrol
,
Pierre Pontarotti
Journal articles
hal-00636411v1
|
|
Amphioxus FGF signaling predicts the acquisition of vertebrate morphological traits.
Stephanie Bertrand
,
Alain Camasses
,
Ildiko Somorjai
,
Mohamed R Belgacem
,
Olivier Chabrol
Proceedings of the National Academy of Sciences of the United States of America, 2011, 108 (22), pp.9160-5. ⟨10.1073/pnas.1014235108⟩
Journal articles
hal-00831149v1
|
|
The role of duplications in the evolution of genomes highlights the need for evolutionary-based approaches in comparative genomics
Anthony Levasseur
,
Pierre Pontarotti
Journal articles
hal-02645551v1
|
|
Origin and evolution of TRIM proteins: new insights from the complete TRIM repertoire of zebrafish and pufferfish
Pierre Boudinot
,
Lieke M van Der Aa
,
Luc Jouneau
,
Louis Du Pasquier
,
Pierre Pontarotti
Journal articles
hal-00831143v1
|
|
Was the ancestral MHC involved in innate immunity
Anthony Levasseur
,
Pierre Pontarotti
Journal articles
hal-02655486v1
|
|
Nme Gene Family Evolutionary History Reveals Pre-Metazoan Origins and High Conservation between Humans and the Sea Anemone, Nematostella vectensis
Thomas Desvignes
,
Pierre Pontarotti
,
Julien Bobe
Journal articles
hal-01204995v1
|
|
Exploring laccase-like multicopper oxidase genes from the ascomycete Trichoderma reesei: a functional, phylogenetic and evolutionary study
Anthony Levasseur
,
Markku Saloheimo
,
David Navarro
,
Martina Andberg
,
Pierre Pontarotti
Journal articles
hal-02658923v1
|
|
CASSIOPE: an expert system for conserved regions searches
Virginie Lopez Rascol
,
Anthony Levasseur
,
Olivier Chabrol
,
Simona Grusea
,
Philippe Gouret
BMC Bioinformatics, 2009, 10, pp.284
Journal articles
hal-02661323v1
|
|
Gene birth, death, and divergence: the different scenarios of reproduction-related gene evolution.
Xin Tian
,
Géraldine Pascal
,
Sophie Fouchécourt
,
Pierre Pontarotti
,
Philippe Monget
Journal articles
hal-00831221v1
|
|
PhyloPattern: regular expressions to identify complex patterns in phylogenetic trees.
Philippe Gouret
,
Julie Thompson
,
Pierre Pontarotti
Journal articles
inserm-00663932v1
|
|
The TP53INP2 protein is required for autophagy in mammalian cells.
Jonathan Nowak
,
Cendrine Archange
,
Joël Tardivel-Lacombe
,
Pierre Pontarotti
,
Marie-Josèphe Pébusque
Journal articles
hal-00831186v1
|
|
Nme protein family evolutionary history, a vertebrate perspective
Thomas Desvignes
,
Pierre Pontarotti
,
Christian Fauvel
,
Julien Bobe
Journal articles
hal-02663889v1
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Massive comparative genomic analysis reveals convergent evolution of specialized bacteria.
Vicky Merhej
,
Manuela Royer-Carenzi
,
Pierre Pontarotti
,
Didier Raoult
Journal articles
hal-00831226v1
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Origin and evolution of the vertebrate leukocyte receptors: the lesson from tunicates.
Ivana Zucchetti
,
Rosaria de Santis
,
Simona Grusea
,
Pierre Pontarotti
,
Louis Du Pasquier
Journal articles
hal-00831237v1
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Nuclear localization of a novel human syntaxin 1B isoform
Sandrine Pereira
,
Annick Massacrier
,
Patrice Roll
,
Alain Vérine
,
Marie-Christine Etienne-Grimaldi
Journal articles
hal-00831154v1
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Evolution of major histocompatibility complex by "en bloc" duplication before mammalian radiation
Elodie Darbo
,
Etienne Danchin
,
Michael Mcdermott
,
Pierre Pontarotti
Journal articles
hal-02664403v1
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FOLy: An integrated database for the classification and functional annotation of fungal oxidoreductases potentially involved in the degradation of lignin and related aromatic compounds
Anthony Levasseur
,
François Piumi
,
Pedro M Coutinho
,
Corinne Rancurel
,
Michèle Asther
Journal articles
hal-02666159v1
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Strategies for reliable exploitation of evolutionary concepts in high throughput biology.
Anthony Levasseur
,
Pierre Pontarotti
,
Olivier Poch
,
Julie D. Thompson
Evolutionary Bioinformatics, 2008, 4, pp.121-37
Journal articles
inserm-00368022v1
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Molecular evolution of the human SRPX2 gene that causes brain disorders of the Rolandic and Sylvian speech areas
Barbara Royer
,
Dinesh C Soares
,
Paul N Barlow
,
Ronald E Bontrop
,
Patrice Roll
Journal articles
hal-03509486v1
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Bromodomain testis-specific protein is expressed in mouse oocyte and evolves faster than its ubiquitously expressed paralogs BRD2, -3, and -4
Amélie Paillisson
,
Anthony Levasseur
,
Philippe Gouret
,
Isabelle Callebaut
,
Martine Bontoux
Journal articles
hal-00131215v1
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Atypical structure and phylogenomic evolution of the new eutherian oocyte- and embryo-expressed KHDC1/DPPA5/ECAT1/OOEP gene family
Alice Pierre
,
Mathieu M. Gautier
,
I. Callebaut
,
Martine Bontoux
,
Eric Jeanpierre
Genomics, 2007, 90 (5), pp.583-594
Journal articles
hal-02666732v1
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The use of evolutionary biology concepts for genome annotation
Etienne Danchin
,
Anthony Levasseur
,
Virginie Lopez Rascol
,
Philippe Gouret
,
Pierre Pontarotti
Journal of Experimental Zoology Part B: Molecular and Developmental Evolution, 2007, 308B (1), pp.26-36. ⟨10.1002/jez.b.21131⟩
Journal articles
hal-02658043v1
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Conceptual bases for quantifying the role of the environment on gene evolution: the participation of positive selection and neutral evolution
Anthony Levasseur
,
Ludovic Orlando
,
Xavier Bailly
,
Michel C. Milinkovitch
,
Etienne Danchin
Journal articles
hal-02668139v1
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Tracking the connection between evolutionary and functional shifts using the fungal lipase/feruloyl esterase A family
Anthony Levasseur
,
Philippe Gouret
,
Laurence Lesage-Meessen
,
Michèle Asther
,
Marcel M. Asther
Journal articles
hal-02660242v1
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Eleven ancestral gene families lost in mammals and vertebrates while otherwise universally conserved in animals
Etienne Danchin
,
Philippe Gouret
,
Pierre Pontarotti
Journal articles
hal-02668451v1
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FIGENIX: intelligent automation of genomic annotation: expertise integration in a new software platform
Philippe Gouret
,
Vérane Vitiello
,
Nathalie Balandraud
,
André Gilles
,
Pierre Pontarotti
Journal articles
hal-02681213v1
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A rigorous method for multigenic families' functional annotation: the peptidyl arginine deiminase (PADs) proteins family example.
Nathalie Balandraud
,
Philippe Gouret
,
Etienne G. J. Danchin
,
M Blanc
,
D Zinn
Journal articles
inserm-00091307v1
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The major histocompatibility complex origin
Etienne Danchin
,
Vérane Vitiello
,
Alexandre Vienne
,
Olivier Richard
,
Philippe Gouret
Immunological Reviews, 2004, 198, pp.216-232
Journal articles
hal-02682552v1
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Towards the reconstruction of the bilaterian ancestral pre-MHC region
Etienne Danchin
,
Pierre Pontarotti
Journal articles
hal-02677408v1
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Statistical evidence for a more than 800-million-year-old evolutionarily conserved genomic region in our genome
Etienne Danchin
,
Pierre Pontarotti
Journal articles
hal-02677409v1
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Conservation of the MHC-like region throughout evolution
Etienne Danchin
,
Laurent Abi-Rached
,
André Gilles
,
Pierre Pontarotti
Journal articles
hal-02681710v1
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Evolution of the proto-MHC ancestral region
Alexandre Vienne
,
Takashi Shiina
,
Laurent Abi-Rached
,
Etienne Danchin
,
Vérane Vitiello
Journal articles
hal-02683166v1
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Endogenous retroviral sequence is fused to FGFR1 kinase in the 8p12 stem-cell myeloproliferative disorder with t(8;19)(p12;q13.3)
Géraldine Guasch
,
Cornel Popovici
,
Francine Mugneret
,
Max Chaffanet
,
Pierre Pontarotti
Journal articles
hal-03634435v1
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A first map of the porcine major histocompatibility complex class I region
F. Velten
,
Claire Rogel Gaillard
,
Christine Renard
,
Pierre Pontarotti
,
R. Tazi-Ahnini
Tissue Antigens, 1998, 51, pp.183-194
Journal articles
hal-02688540v1
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Molecular linkage of the human CTLA4 and CD28 Ig-superfamily genes in yeast artificial chromosomes
Nathalie Buonavista
,
Christine Balzano
,
Pierre Pontarotti
,
Denis Le Paslier
,
Pierre Golstein
Journal articles
hal-03104217v1
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