Mélanie Ribeiro Lopes

62
Documents
Affiliation actuelle
  • Biologie Fonctionnelle, Insectes et Interactions (BF2I)
Identifiants chercheurs
Contact

Présentation

Positions

2021-now: Associate Professor at INSA Lyon and BF2I Lab 2020-2021: Fixed term Assistant Professor (French ATER) at INSA Lyon and BF2i Lab 2017-2020: PhD student, INSA Lyon (Villeurbanne, France), BF2i lab. "A new type of non-apoptotic cell death involved in bacteriocyte elimination in aphids: molecular mechanisms and physiological regulation"

Academic degrees

2020: PhD thesis in Microorganisms, interactions, infections, INSA Lyon, Villeurbanne, France 2017: Master of Science in Molecular Microbiology, Pathogeny and Microbial Ecology, Université Claude Bernard Lyon 1, Villeurbanne, France 2017: Engineering degree in Biochemistry and Biotechnology, INSA Lyon, Villeurbanne, France 2014: Bachelor in Chemistry and Biology, University Paris-Est Créteil Paris XII, Créteil, France

Research focus

Insect symbiosis Host-symbiont interactions Regulation of bateriocyte dynamics

Domaines de recherche

Biologie moléculaire Organisation et fonctions cellulaires [q-bio.SC] Embryologie et organogenèse Bio-Informatique, Biologie Systémique [q-bio.QM] Interactions entre organismes

Publications

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Publications

Image document

Cooperation between symbiotic partners through protein trafficking

Mariana Galvão Ferrarini , Mélanie Ribeiro Lopes , Rita Rebollo
Proceedings of the National Academy of Sciences of the United States of America, 2025, 122 (3), pp.e2424789122. ⟨10.1073/pnas.2424789122⟩
Article dans une revue hal-04913970 v1

Strong impact of orally administered BCR4 defensin on aphid survival, embryo development, and symbiotic cells in three Acyrthosiphon pisum parthenogenetic lines

Hugo Terrasson , Karen Gaget , Garance Lapetoule , Isabelle Rahioui , François Renoz et al.
Journal of Pest Science, 2025, 98 (3), pp.1599-1612. ⟨10.1007/s10340-025-01923-0⟩
Article dans une revue hal-05127596 v1
Image document

NPF signaling-dependent maintenance of metabolic homeostasis in the pea aphid is mediated by a highly selective ligand-receptor interaction and tissue-specific changes in NPF and NPFR

Cissy Huygens , Mélanie Ribeiro Lopes , El-Sayed Baz , Jozef Vanden Broeck , Federica Calevro et al.
Heliyon, 2025, 11 (12), pp.e43504. ⟨10.1016/j.heliyon.2025.e43504⟩
Article dans une revue hal-05111335 v1
Image document

Annotation of transcription factors, chromatin-associated factors, and basal transcription machinery in the pea aphid, Acyrthosiphon pisum, and development of the ATFdb database, a resource for studies of transcriptional regulation

Nicolas Parisot , Mélanie Ribeiro Lopes , Sergio Peignier , Patrice Baa-Puyoulet , Hubert Charles et al.
Insect Biochemistry and Molecular Biology, 2024, 177, pp.104217. ⟨10.1016/j.ibmb.2024.104217⟩
Article dans une revue hal-04832131 v1
Image document

Reference genes to study the sex-biased expression of genes regulating Drosophila metabolism

Sofie de Groef , Melanie Ribeiro Lopes , Mattias Winant , Emily Rosschaert , Tom Wilms et al.
Scientific Reports, 2024, 14 (1), pp.9518. ⟨10.1038/s41598-024-58863-5⟩
Article dans une revue hal-04632870 v1
Image document

Discovery of an Insect Neuroactive Helix Ring Peptide from Ant Venom

Valentine Barassé , Laurence Jouvensal , Guillaume Boy , Arnaud Billet , Steven Ascoët et al.
Toxins, 2023, 15 (10), pp.600. ⟨10.3390/toxins15100600⟩
Article dans une revue hal-04390519 v1
Image document

The Di-Symbiotic Systems in the Aphids Sipha maydis and Periphyllus lyropictus Provide a Contrasting Picture of Recent Co-Obligate Nutritional Endosymbiosis in Aphids

François Renoz , Jérôme Ambroise , Bertrand Bearzatto , Samir Fakhour , Nicolas Parisot et al.
Microorganisms, 2022, 10 (7), pp.1360. ⟨10.3390/microorganisms10071360⟩
Article dans une revue hal-03738802 v1
Image document

Evolutionary diversification of insulin-related peptides (IRPs) in aphids and spatiotemporal distribution in Acyrthosiphon pisum

C. Huygens , Mélanie Ribeiro Lopes , Karen Gaget , G. Duport , S. Peignier et al.
Insect Biochemistry and Molecular Biology, In press, 141, pp.103670. ⟨10.1016/j.ibmb.2021.103670⟩
Article dans une revue hal-03507324 v1
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Aphid BCR4 Structure and Activity Uncover a New Defensin Peptide Superfamily

Karine Loth , Nicolas Parisot , Françoise Paquet , Hugo Terrasson , Catherine Sivignon et al.
International Journal of Molecular Sciences, 2022, 23 (20), pp.12480. ⟨10.3390/ijms232012480⟩
Article dans une revue hal-03862651 v1
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Compartmentalized into Bacteriocytes but Highly Invasive: the Puzzling Case of the Co-Obligate Symbiont Serratia symbiotica in the Aphid Periphyllus lyropictus

François Renoz , Mélanie Ribeiro Lopes , Karen Gaget , Gabrielle Duport , Marie-Christine Eloy et al.
Microbiology Spectrum, 2022, ⟨10.1128/spectrum.00457-22⟩
Article dans une revue hal-03704068 v1
Image document

Bacteriocyte plasticity in pea aphids facing amino acid stress or starvation during development

Mélanie Ribeiro Lopes , Karen Gaget , François Renoz , Marie-Gabrielle Duport , Severine Balmand et al.
Frontiers in Physiology, 2022, 13, pp.982920. ⟨10.3389/fphys.2022.982920⟩
Article dans une revue hal-04014003 v1
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Evolutionary novelty in the apoptotic pathway of aphids

Mélanie Ribeiro Lopes , Nicolas Parisot , Karen Gaget , Cissy Huygens , Sergio Peignier et al.
Proceedings of the National Academy of Sciences of the United States of America, 2020, 117 (51), pp.32545-32556. ⟨10.1073/pnas.2013847117⟩
Article dans une revue hal-03052353 v1
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The genome sequence of the grape phylloxera provides insights into the evolution, adaptation, and invasion routes of an iconic pest

Claude Rispe , Fabrice Legeai , Paul Nabity , Rosa Fernández , Arinder Arora et al.
BMC Biology, 2020, 18 (1), pp.90. ⟨10.1186/s12915-020-00820-5⟩
Article dans une revue hal-02917617 v1
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Bacteriocyte cell death in the pea aphid/ Buchnera symbiotic system

Pierre Simonet , Karen Gaget , Severine Balmand , Mélanie Ribeiro Lopes , Nicolas Parisot et al.
Proceedings of the National Academy of Sciences of the United States of America, 2018, 115 (8), pp.E1819 - E1828. ⟨10.1073/pnas.1720237115⟩
Article dans une revue hal-01768487 v1
Image document

Evolution towards a two-way cooperation in a single symbiotic organ: the developmental chronicle of a multi-partner insect endosymbiosis

François Renoz , Karen Gaget , Hubert Charles , Nicolas Parisot , Patrice Baa-Puyoulet et al.
International congress of Ecology and Evolution (SFE2), Société Française d'Ecologie et d'Evolution (SFE2), Oct 2024, Lyon, France
Communication dans un congrès hal-04753005 v1

Two-way cooperation in a single symbiotic organ: the developmental chronicle of a multi-partner insect endosymbiosis

François Renoz , Karen Gaget , Hubert Charles , Mélanie Ribeiro Lopes , Nicolas Parisot et al.
3rd Joint Congress on Evolutionary Biology, Jul 2024, Montreal, Canada
Communication dans un congrès hal-04753845 v1

Subcellular localization of BCR4, an aphid-specific defensin peptide, in the bacteriocytes of Acyrthosiphon pisum

Hugo Terrasson , Karen Gaget , Séverine Balmand , Isabelle Rahioui , Patrick Callaerts et al.
2nd Webinaire du réseau "MultiFonction des Peptides AntiMicrobiens" (MuFoPAM), Apr 2024, Virtual, France
Communication dans un congrès hal-04633387 v1

BCR4, a defensin with a strong impact on aphid survival, embryo development and symbiotic cells of three Acyrthosiphon pisum lines

Hugo Terrasson , Karen Gaget , Garance Lapetoule , Isabelle Rahioui , François Renoz et al.
14èmes rencontres du réseau français de Biologie Adaptative des Pucerons et Organismes Associés (BAPOA), Nov 2024, Montpellier, France
Communication dans un congrès hal-04772051 v1

RNAseq analysis reveals new roles for conserved metazoan pathways in the regulation of bacteriocyte dynamics

Mélanie Ribeiro Lopes , Sergio Peignier , Karen Gaget , François Renoz , Patrick Callaerts et al.
14èmes rencontres du réseau français de Biologie Adaptative des Pucerons et Organismes Associés (BAPOA), Oct 2024, Montpellier, France
Communication dans un congrès hal-04783705 v1

Evolutionarily conserved metazoan pathways have evolved new functions and regulate bacteriocytes' dynamics in the context of symbiosis

Mélanie Ribeiro Lopes , Nicolas Parisot , Sergio Peignier , Karen Gaget , François Renoz et al.
XXVII International Congress of Entomology, Aug 2024, Kyoto, Japan
Communication dans un congrès hal-04702864 v1

A genome-wide annotation of transcription factors in the pea aphid, Acyrthosiphon pisum, and the related database, ATFdb

Nicolas Parisot , Mélanie Ribeiro Lopes , Hubert Charles , Sergio Peignier , Patrice Baa-Puyoulet et al.
13èmes rencontres du réseau français de Biologie Adaptative des Pucerons et Organismes Associés (BAPOA), Nov 2023, Villeurbanne, France
Communication dans un congrès hal-04524595 v1

Acyrthosiphon pisum tissue-specific gene regulatory network inference

Sergio Peignier , Erwan Cruché , Elea Pauliat , Mélanie Ribeiro Lopes , Nicolas Parisot et al.
13èmes rencontres du réseau français de Biologie Adaptative des Pucerons et Organismes Associés (BAPOA), Nov 2023, Villeurbanne, France
Communication dans un congrès hal-04670574 v1

Characterization of Neuropeptide F and its receptor in the pea aphid, Acyrthosiphon pisum

Cissy Huygens , Jasmine Donckers , Mélanie Ribeiro Lopes , Karen Gaget , Federica Calevro et al.
13èmes rencontres du réseau français de Biologie Adaptative des Pucerons et Organismes Associés (BAPOA), Nov 2023, Villeurbanne, France
Communication dans un congrès hal-04670572 v1

Immunolocalisation des peptides "Bacteriocyte-specific cystein rich" (BCR), potentiels régulateurs de la symbiose chez les pucerons

Hugo Terrasson , Karen Gaget , Severine Balmand , Isabelle Rahioui , Patrick Callaerts et al.
13èmes rencontres du réseau français de Biologie Adaptative des Pucerons et Organismes Associés (BAPOA), Nov 2023, Lyon, France
Communication dans un congrès hal-04633315 v1

Bacteriocyte-specific Cysteine-Rich (BCR) peptides form a new aphid-specific defensin-like family and are promising regulators of aphid symbiosis

Hugo Terrasson , Karine Loth , Nicolas Parisot , Françoise Paquet , Isabelle Rahioui et al.
Rencontres du Réseau Ecologie des Interactions Durables (REID), May 2023, Poitiers, France
Communication dans un congrès hal-04633283 v1

Plasticity of bacteriocytes facing nutritional stresses in the pea aphid development.

Mélanie Ribeiro Lopes , Karen Gaget , François Renoz , Marie-Gabrielle Duport , Severine Balmand et al.
12èmes rencontres du réseau français de Biologie Adaptative des Pucerons et Organismes Associés (BAPOA), May 2022, Nice, France
Communication dans un congrès hal-03741301 v1

The bacteriocyte: a biological innovation to sustain and control bacterial symbionts in insect nutritional symbioses

Mélanie Ribeiro Lopes , Federica Calevro
Invited seminar at UMR 754 IVPC-SFR Biosciences, Nov 2022, Lyon, France
Communication dans un congrès hal-04670597 v1

Peptides « Bacteriocyte-specific Cysteine Rich » (BCR) : un rôle dans le contrôle de la symbiose ? Focus sur BCR4 chez le puceron du pois.

Hugo Terrasson , Karine Loth , Nicolas Parisot , Françoise Paquet , Isabelle Rahioui et al.
12èmes rencontres du réseau français de Biologie Adaptative des Pucerons et Organismes Associés (BAPOA), May 2022, Nice, France
Communication dans un congrès hal-04771966 v1

Les peptides « Bacteriocyte-specific Cystein-Rich » : une nouvelle famille de défensine. Régulateurs de la symbiose chez les pucerons ?

Hugo Terrasson , Karine Loth , Nicolas Parisot , Françoise Paquet , Isabelle Rahioui et al.
9ème Journées du GDR "MultiFonction des Peptides AntiMicrobiens" (MuFoPAM), Oct 2022, Amboise, France
Communication dans un congrès hal-04633233 v1

Bacteriocyte differentiation and cell death in the aphid/Buchnera symbiotic system

Mélanie Ribeiro Lopes , Nicolas Parisot , Patrick Callaerts , Federica Calevro
XXVI International Congress of Entomology, Jul 2022, Helsinki, Finland
Communication dans un congrès hal-04670590 v1

The inhibitor of apoptosis (IAP) gene family in aphids: amplification, diversification and function in bacteriocyte dynamics

Mélanie Ribeiro Lopes
Joint DGIMI/BF2i webinar, Oct 2021, Virtual, France
Communication dans un congrès hal-04783715 v1

The Inhibitor of APoptosis (IAP) gene family in aphids: between expansion and functional diversification

Mélanie Ribeiro Lopes , Nicolas Parisot , Sergio Peignier , Karen Gaget , Marie-Gabrielle Duport et al.
Webinaire du réseau français de Biologie Adaptative des Pucerons et Organismes Associés (BAPOA), 2021, Villeurbanne (virtual), France
Communication dans un congrès hal-03514209 v1

Evidence for high plasticity and modularity of the Inhibitor of APoptosis (IAP) repertoire in insects

Mélanie Ribeiro Lopes , Federica Calevro
Invited seminar at University of Pisa, Dec 2021, Pise, Italy
Communication dans un congrès hal-04670594 v1

Analysis of the inhibitor of aPoptosis (IAP) repertoire in insects reveals a complex pattern of gene losses and amplifications

Mélanie Ribeiro Lopes , Jousselin Emmanuelle , Patrice Baa-Puyoulet , C. Huygens , Karen Gaget et al.
Incontri di diversità delle forme e degli animali, Università di Pisa, 2021, Pisa, Italy
Communication dans un congrès hal-03514196 v1

IAP (Inhibitor-of-Apoptosis Protein) gene family expansion and functional diversification in aphids

Mélanie Ribeiro Lopes , Nicolas Parisot , Karen Gaget , Marie-Gabrielle Duport , Korneel Hens et al.
2nd UK-France Joint meeting on Aphids - Royal Entomologial Society, Apr 2019, Rothamsted, United Kingdom
Communication dans un congrès hal-03512999 v1

IAP (Inhibitor-of-Apoptosis Protein) gene family expansion and functional characterization in aphids

Mélanie Ribeiro Lopes , Nicolas Parisot , Karen Gaget , Marie-Gabrielle Duport , Korneel Hens et al.
8th International Symposium on Molecular Insect Science, Jul 2019, Sitges, Spain
Communication dans un congrès hal-03741297 v1

Bacteriocyte reprogramming to cope with nutritional stress in a phloem sap feeding hemipteran, the pea aphid Acyrthosiphon pisum

Nicolas Parisot , Stefano Colella , Mélanie Ribeiro Lopes , Karen Gaget , Marie-Gabrielle Duport et al.
INSA Lyon International Partner Days, Oct 2018, Villeurbanne (INSA-Lyon), France
Communication dans un congrès hal-03514034 v1

Expansion of genes encoding Apoptosis Inhibitor Proteins (IAPs) and their role in a novel bacteriocyte cell death process in aphid symbiosis

Mélanie Ribeiro Lopes , Nicolas Parisot , Karen Gaget , Pierre Simonet , Severine Balmand et al.
22. Evolutionary Biology Meeting, Sep 2018, Marseille, France
Communication dans un congrès hal-03509938 v1

Rôle clé du bactériocyte dans la résilience du puceron aux stress nutritionnels

Federica Calevro , Nicolas Parisot , Mélanie Ribeiro Lopes , Stefano Colella , Karen Gaget et al.
11ème Réunion du Réseau Français de Biologie Adaptative des Pucerons et Organismes Associés (BAPOA), Nov 2018, Rennes, France
Communication dans un congrès hal-03514026 v1

A novel cell death process is involved in the elimination of bacteriocytes and their symbionts through aphid aging

Mélanie Ribeiro Lopes , Pierre Simonet , Karen Gaget , Severine Balmand , Nicolas Parisot et al.
France-Israel PRC Meeting – The role of metabolic interactions in shaping the bacterial endosymbiotic community of Hemyptera, Nov 2018, Villeurbanne, France
Communication dans un congrès hal-03514078 v1

Bacteriocyte reprogramming to cope with nutritional stress in a phloem sap feeding hemipteran, the pea aphid Acyrthosiphon pisum

Nicolas Parisot , Mélanie Ribeiro Lopes , Karen Gaget , Marie-Gabrielle Duport , Patrice Baa-Puyoulet et al.
France-Israel PRC Meeting – The role of metabolic interactions in shaping the bacterial endosymbiotic community of Hemyptera, Nov 2018, Villeurbanne, France
Communication dans un congrès hal-03514051 v1

Amplification des gènes codant les protéines de la famille des IAP et leur rôle dans l'homéostasie bactériocytaire

Mélanie Ribeiro Lopes , Nicolas Parisot , Karen Gaget , Marie-Gabrielle Duport , Korneel Hens et al.
11èmes rencontres du réseau de Biologie Adaptative des Pucerons et Organismes Associés (BAPOA), Nov 2018, Rennes, France
Communication dans un congrès hal-03741308 v1

Another way to die for bacteriocytes in the aphid/Buchnera symbiotic system

Mélanie Ribeiro Lopes , Pierre Simonet , Karen Gaget , Severine Balmand , Kurt Buhler et al.
Journée des doctorants du département SPE, Jun 2018, Nice, France
Communication dans un congrès hal-03510629 v1

Effecteurs et inhibiteurs de l’apoptose chez le puceron du pois : annotation et implication dans la mort cellulaire bactériocytaire

Mélanie Ribeiro Lopes , Pierre Simonet , Karen Gaget , Marie-Gabrielle Duport , Severine Balmand et al.
10. Réunion du Réseau Français de Biologie Adaptative des Pucerons et Organismes Associés (BAPOA), Nov 2017, Colmar, France
Communication dans un congrès hal-03506807 v1

Détection et segmentation automatisée de bactériocytes à partir d’images de microscopie optique

Nathan Hutin , Mélanie Ribeiro Lopes , Karen Gaget , Severine Balmand , Federica Calevro et al.
Colloque Français d'Intelligence Artificielle en Imagerie Biomédicale (IABM) 2025, Mar 2025, Nice, France
Poster de conférence hal-05005315 v1

Origin and evolution of Inhibitors of apoptosis (IAP) in early metazoans

Mélanie Ribeiro Lopes , Nicolas Parisot , Sergio Peignier , François Renoz , Patrice Baa-Puyoulet et al.
Conférences Jacques-Monod, Jun 2025, Roscoff, France
Poster de conférence hal-05137897 v1

The aphid BCR4 structure and activity uncover a new defensin peptide superfamily

Hugo Terrasson , Karine Loth , Nicolas Parisot , Françoise Paquet , Isabelle Rahioui et al.
XXVII International Congress of Entomology, Aug 2024, Kyoto, Japan
Poster de conférence hal-04702878 v1

The Bacteriocyte-specific Cysteine-Rich (BCR) proteins: a role in the control of aphid symbiosis ?

Hugo Terrasson , Karine Loth , Françoise Paquet , Nicolas Parisot , Isabelle Rahioui et al.
Journée scientifique enjeu « santé globale et bio‐ingénierie » de l'INSA Lyon, Apr 2023, Villeurbanne, France
Poster de conférence hal-04633269 v1

Extreme plasticity of bacteriocytes facing nutritional stresses during pea aphid development

Mélanie Ribeiro Lopes , Karen Gaget , François Renoz , Marie-Gabrielle Duport , Severine Balmand et al.
10th congress of the International Symbiosis Society (ISS) - 3rd International Conference on Holobionts (joint meeting), Jul 2022, Lyon, France
Poster de conférence hal-03741327 v1

Embedded into bacteriocytes, but highly invasive: the puzzling case of the co-obligate symbiont Serratia symbiotica in the aphid Periphyllus lyropictus

François Renoz , Mélanie Ribeiro Lopes , Karen Gaget , Marie-Gabrielle Duport , Marie-Christine Eloy et al.
ELI-Day, Annual meeting of the Earth and Life Institute of the University of Louvain-la-Neuve, May 2022, Louvain-la-Neuve, Belgium
Poster de conférence hal-03741341 v1

ER stress as a major regulator of aphid bacteriocyte cell death

Karen Gaget , Mélanie Ribeiro Lopes , Marie-Gabrielle Duport , Patrick Callaerts , Nicolas Parisot et al.
12èmes rencontres du réseau français de Biologie Adaptative des Pucerons et Organismes Associés (BAPOA), May 2022, Nice, France
Poster de conférence hal-03741344 v1

Bacteriocytes and the interorgan communication network regulating physiology and metabolism of the pea aphid

Cissy Huygens , Mélanie Ribeiro Lopes , Karen Gaget , Marie-Gabrielle Duport , Sergio Peignier et al.
10th congress of the International Symbiosis Society (ISS) - 3rd International Conference on Holobionts (joint meeting), Jul 2022, Lyon, France
Poster de conférence hal-03741324 v1

The role of GPCRs in metabolism and physiology of the pea aphid, Acyrthosiphon pisum

Cissy Huygens , Mélanie Ribeiro Lopes , Karen Gaget , Marie-Gabrielle Duport , Federica Calevro et al.
XXVI International Congress of Entomology, Jul 2022, Helsinki, Finland
Poster de conférence hal-03741320 v1

Bacteriocyte specific Cystein Rich peptides, a new defensin like protein family , are promising regulators of aphid symbiosis

Hugo Terrasson , Karine Loth , Nicolas Parisot , Françoise Paquet , Isabelle Rahioui et al.
10th congress of the International Symbiosis Society (ISS) - 3rd International Conference on Holobionts (joint meeting), Jul 2022, Lyon, France
Poster de conférence hal-04771990 v1

A novel cell death process eliminates both bacteriocytes and their symbionts in the pea aphid/Buchnera symbiotic system

Mélanie Ribeiro Lopes , Pierre Simonet , Karen Gaget , Severine Balmand , Nicolas Parisot et al.
2nd UK-France Joint meeting on Aphids - Royal Entomological Society, Apr 2019, Rothamsted, United Kingdom
Poster de conférence hal-03513018 v1

A novel cell death process eliminates both bacteriocytes and their symbionts in the pea aphid/Buchnera symbiotic system

Karen Gaget , Severine Balmand , Kurt Buhler , Patrick Callaerts , Nicolas Parisot et al.
INSA Lyon International Partner Days, Oct 2018, Villeurbanne (INSA-Lyon), France
Poster de conférence hal-03514067 v1

Molecular characterization of aphid bacteriocyte cell death by RNAseq analysis

Nicolas Parisot , Stefano Colella , Mélanie Ribeiro Lopes , Karen Gaget , Marie-Gabrielle Duport et al.
INSA Lyon International Partner Days, Oct 2018, Lyon, France
Poster de conférence hal-03741347 v1

A novel cell death process eliminates both bacteriocytes and their symbionts in the pea aphid/Buchnera symbiotic system

Mélanie Ribeiro Lopes , Pierre Simonet , Karen Gaget , Severine Balmand , Nicolas Parisot et al.
11. European Congress of Entomology, Jul 2018, Naples, Italy
Poster de conférence hal-03509913 v1

Molecular characterization of aphid bacteriocyte cell death by RNAseq analysis

Mélanie Ribeiro Lopes , Nicolas Parisot , Karen Gaget , Patrick Callaerts , Federica Calevro
11th European Congress of Entomology, Jul 2018, Naples, Italy
Poster de conférence hal-03741337 v1