Mikaël Salson
Publications
Publications
REINDEER2: practical abundance index at scaleSPIRE 2025, Sep 2025, London, France. ⟨10.1101/2025.06.16.659990⟩ |
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Indexer un ensemble de séquences ADN annotéesJOBIM, Jun 2016, Lyon, France |
Diagnostic et suivi des leucémies aiguës lymphoblastiques (LAL) par séquençage haut-débit (HTS)Congrès de la Société Française d'Hématologie (SFH), 2014, Paris, France |
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Lossless seeds for searching short patterns with high error ratesInternational Workshop On Combinatorial Algorithms, Oct 2014, Duluth, United States |
SortMeRNA 2: ribosomal RNA classification for taxonomic assignationWorkshop on Recent Computational Advances in Metagenomics, ECCB 2014, Sep 2014, Strasbourg, France |
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Suivi de la leucémie résiduelle par séquençage haut-débitJOBIM, Jul 2013, Toulouse, France |
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A solution to index large set of short readsseqBi11 - Workshop Algorithmique, combinatoire du texte et applications en bio-informatique, 2011, Rennes, France |
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Average Complexity for Updating a Suffix ArrayLondon Stringology Days, 2010, United Kingdom. Accepted |
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Coût d'une mise à jour de la table des suffixesJournées GdT COMATEGE du GDR IM, 2010, Montpellier, France |
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Efficient Dynamic Range Minimum QueryInternational Stringology Conference, 2010, Tel Aviv, Israel |
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Dynamic range minimum queriesThe 9th International Stringology Conference, 2010, Israel |
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Sliding a Suffix Array Along a TextLondon Stringology Days, 2010, United Kingdom. Accepted |
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Dynamic Burrows-Wheeler TransformStringology Research Workshop 09, 2009, Tel Aviv, Israel |
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Dynamic Extended Suffix ArraysLondon String Days and London Algorithmics Workshop, 2009, France |
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Dynamic Suffix Array with experiments and a specific emphasis on LCP arraysStringology Research Workshop 09, 2009, Tel Aviv, Israel |
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Dynamic Burrows-Wheeler TransformPrague Stringology Conference, 2008, Czech Republic. pp.13--25 |
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Dynamic Burrows-Wheeler TransformPrague Stringology Conference, 2008, Prague, Czech Republic. pp.13-25 |
Multiclonal Diagnosis and MRD Follow-up in ALL with HTS Coupled with a Bioinformatic AnalysisAmerican Society of Hematology Annual Meeting, 2014, San Francisco, France. , 2014 |
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One-Step Next-Generation Sequencing of Immunoglobulin and T-Cell Receptor Gene Recombinations for MRD Marker Identification in Acute Lymphoblastic LeukemiaAnton W. Langerak. Immunogenetics. Methods and Protocols, 2453, Springer, pp.43-59, 2022, Methods in Molecular Biology, 978-1-0716-2115-8. ⟨10.1007/978-1-0716-2115-8_3⟩ |
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Immunoglobulin Gene Mutational Status Assessment by Next Generation Sequencing in Chronic Lymphocytic LeukemiaAnton W. Langerak. Immunogenetics, 2453, Springer, pp.153-167, 2022, Methods in Molecular Biology, 978-1-0716-2115-8. ⟨10.1007/978-1-0716-2115-8_10⟩ |
Sequence IndexingFrom Sequences to Graphs: Discrete Methods and Structures for Bioinformatics, 1, Wiley, 2022, 9781394169641. ⟨10.1002/9781394169641.ch2⟩ |
A dataset of sequences with manually curated V(D)J designations2016 |
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Data structures based on k-mers for querying large collections of sequencing datasets2019 |
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SARS-CoV-2 Through the Lens of Computational Biology: How bioinformatics is playing a key role in the study of the virus and its origins[Research Report] CNRS. 2021, pp.1-35 |
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Méthodes sans alignement et indexation pour l'analyse de données nucléiques massivesInformatique [cs]. Université de lille, 2023 |