Sébastien Aubourg

INRAE Senior Scientist
93
Documents
Affiliation actuelle
  • Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE)

Publications

Publications

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Assembly and annotation of the 'Golden Delicious' Doubled-Haploid GDDH18 apple genome

Marine Salson , Christelle Lalanne , Maryline Cournol , Sylvain Hanteville , Damien Hinsinger et al. Article dans une revue hal-05606946v1
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Misannotated domains in plant databases: lessons from ‘PIPLC Y-box-containing’ proteins

Lucas Amokrane , Sébastien Aubourg , Eric Ruelland

Trends in Plant Science, In press, ⟨10.1016/j.tplants.2026.04.005⟩

Article dans une revue hal-05604494v1
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Antimicrobial Peptides as Part of the Arsenal of Constitutive and Inducible Seed Defences in Tomato Seed Exudates Against Pathogens

Łukasz P Tarkowski , Benjamin Hubert , Muriel Marchi , Camille Tranchant , Stéphanie Boutet et al.

Molecular Plant Pathology, 2025, 26 (10), ⟨10.1111/mpp.70164⟩

Article dans une revue hal-05361526v1
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Phytocytokine genes newly discovered in Malus domestica and their regulation in response to Erwinia amylovora and acibenzolar‐S‐methyl

Marie‐charlotte Guillou , Matthieu Gaucher , Emilie Vergne , Jean-Pierre Renou , Marie-Noëlle Brisset et al.

Plant Genome, 2025, 18, pp.e20540. ⟨10.1002/tpg2.20540⟩

Article dans une revue hal-05206927v1
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Subtilase-mediated biogenesis of the expanded family of SERINE RICH ENDOGENOUS PEPTIDES

Huanjie Yang , Xeniya Kim , Jan Skłenar , Sébastien Aubourg , Gloria Sancho-Andrés et al.

Nature Plants, 2023, 9 (12), pp.2085-2094. ⟨10.1038/s41477-023-01583-x⟩

Article dans une revue hal-04394015v1

SCOOP12 peptide acts on ROS homeostasis to modulate cell division and elongation in Arabidopsis primary root

Marie-Charlotte Guillou , Emilie Vergne-Gaillard , Sophie Aligon , Sandra Pelletier , Fabienne Simonneau et al.

Journal of Experimental Botany, 2022, pp.jxb/erac240. ⟨10.1093/jxb/erac240⟩

Article dans une revue hal-03726020v1
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The MIK2/SCOOP Signaling System Contributes to Arabidopsis Resistance Against Herbivory by Modulating Jasmonate and Indole Glucosinolate Biosynthesis

Elia Stahl , Angel Fernandez Martin , Gaétan Glauser , Marie-Charlotte Guillou , Sébastien Aubourg et al.

Frontiers in Plant Science, 2022, 13, pp.852808. ⟨10.3389/fpls.2022.852808⟩

Article dans une revue hal-03701614v1
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The PROSCOOP10 Gene Encodes Two Extracellular Hydroxylated Peptides and Impacts Flowering Time in Arabidopsis

Marie-Charlotte Guillou , Thierry Balliau , Emilie Vergne , Hervé Canut , Josiane Chourré et al.

Plants, 2022, 11 (24), pp.3554. ⟨10.3390/plants11243554⟩

Article dans une revue hal-03915560v2

Correction to: An Erwinia amylovora inducible promoter for improvement of apple fire blight resistance

Matthieu Gaucher , Laura Righetti , Sébastien Aubourg , Thomas Duge de Bernonville , Marie-Noëlle Brisset et al.

Plant Cell Reports, 2022, 41, pp.1789. ⟨10.1007/s00299-022-02887-6⟩

Article dans une revue hal-05153564v1
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An Erwinia amylovora inducible promoter for improvement of apple fire blight resistance

Matthieu Gaucher , Laura Righetti , Sébastien Aubourg , Thomas Duge de Bernonville , Marie-Noëlle Brisset et al.

Plant Cell Reports, 2022, 41, pp.1499-1513. ⟨10.1007/s00299-022-02869-8⟩

Article dans une revue hal-03656697v1
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Current status of the multinational Arabidopsis community

Keith Adams , Wagner Araújo , Sebastien Aubourg , Sacha Baginsky , Erica Bakker et al.

Plant Direct, 2020, 4 (7), pp.e00248. ⟨10.1002/pld3.248⟩

Article dans une revue hal-02927028v1
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An <em>Erwinia amylovora</em> inducible promoter for intragenic improvement of apple fire blight resistance

Matthieu Gaucher , Laura Righetti , Sébastien Aubourg , Thomas Duge de Bernonville , Marie-Noëlle Brisset et al.

BioRxiv, 2019, ⟨10.1101/767772⟩

Article dans une revue hal-02624779v1
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The SCOOP12 peptide regulates defense response and root elongation in Arabidopsis thaliana

Kay Gully , Sandra Pelletier , Marie-Charlotte Guillou , Marina Ferrand , Sophie Aligon et al.

Journal of Experimental Botany, 2019, 70 (4), pp.1349-1365. ⟨10.1093/jxb/ery454⟩

Article dans une revue hal-02118952v1
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A high-quality genome sequence of Rosa chinensis to elucidate ornamental traits

L. Hibrand Saint-Oyant , T. Ruttink , L. Hamama , I. Kirov , D. Lakhwani et al.

Nature Plants, 2018, 4 (7), pp.473 - 484. ⟨10.1038/s41477-018-0166-1⟩

Article dans une revue hal-01873309v1
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Acibenzolar-S-Methyl Reprograms Apple Transcriptome Toward Resistance to Rosy Apple Aphid

Romain Warneys , Matthieu Gaucher , Philippe Robert , Sophie Aligon , Sylvia Anton et al.

Frontiers in Plant Science, 2018, 9, pp.1795. ⟨10.3389/fpls.2018.01795⟩

Article dans une revue hal-02102171v1

Identification of candidate genes at the Dp-fl locus conferring resistance against the rosy apple aphid Dysaphis plantaginea

Michela Dall’agata , Giulia Pagliarani , S. Padmarasu , Michela Troggio , Luca Bianco et al.

Tree Genetics and Genomes, 2018, 14 (1), pp.12. ⟨10.1007/s11295-018-1227-3⟩

Article dans une revue hal-02516684v1
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Large scale study of anti-sense regulation by differential network analysis

Marc Legeay , Sébastien Aubourg , Jean-Pierre Renou , Béatrice Duval

BMC Systems Biology, 2018, 12 (S5), pp.95. ⟨10.1186/s12918-018-0613-7⟩

Article dans une revue hal-02516677v1

A high-quality sequence of Rosa chinensis to elucidate genome structure and ornamental traits

Laurence Hibrand-Saint Oyant , Tom Ruttink , Latifa Hamama , Ilya Kirov , Deepika Lakhwani et al.

Nature Plants, 2018, 4, pp.473-484. ⟨10.1101/254102⟩

Article dans une revue hal-02516576v1
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High-quality de novo assembly of the apple genome and methylome dynamics of early fruit development

Nicolas Daccord , Jean-Marc Celton , G. Linsmith , C. Becker , Nathalie Choisne et al.

Nature Genetics, 2017, 49 (7), pp.1099-1108. ⟨10.1038/ng.3886⟩

Article dans une revue hal-01602554v1
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Genome-Wide Association Mapping of Flowering and Ripening Periods in Apple

Jorge Urrestarazu , Hélène Muranty , Caroline Denancé , Diane Leforestier , Elisa Ravon et al.

Frontiers in Plant Science, 2017, 8 (8), pp.1923. ⟨10.3389/fpls.2017.01923⟩

Article dans une revue (article de synthèse) hal-01905260v1

Synthetic data sets for the identification of key ingredients for RNA-seq differential analysis

Guillem Rigaill , Sandrine Balzergue , Véronique Brunaud , Eddy Blondet , Andrea Rau et al.

Briefings in Bioinformatics, 2016, 19 (1), pp.65-76. ⟨10.1093/bib/bbw092⟩

Article dans une revue hal-01595551v1
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In plants, decapping prevents RDR6-dependent production of small interfering RNAs from endogenous mRNAs

Angel Martinez de Alba , Anna Beatriz Moreno , Marc Gabriel , Allison Mallory , Aurélie Christ et al.

Nucleic Acids Research, 2015, 43 (5), pp.2902-2913. ⟨10.1093/nar/gkv119⟩

Article dans une revue hal-01204176v1
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Identifying new sex-linked genes through BAC sequencing in the dioecious plant <em>Silene latifolia</em>

Nicolas Blavet , Hana Blavet , Aline Muyle , Jos Käfer , Radim Cegan et al.

BMC Genomics, 2015, 16, pp.546. ⟨10.1186/s12864-015-1698-7⟩

Article dans une revue hal-02637603v1
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GEM2Net: from gene expression modeling to -omics networks, a new CATdb module to investigate Arabidopsis thaliana genes involved in stress response

Rim Zaag , Jean-Philippe Tamby , Cecile Guichard , Zakia Tariq , Guillem Rigaill et al.

Nucleic Acids Research, 2015, 43 (Database issue), pp.D1010-D1017. ⟨10.1093/nar/gku1155⟩

Article dans une revue hal-01137554v1
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Functional analysis of Arabidopsis immune-related MAPKs uncovers a role for MPK3 as negative regulator of inducible defences

Nicolas Frei Dit Frey , Anna Victoria Garcia , Jean Bigeard , Rim Zaag , Eduardo Bueso et al.

Genome Biology, 2014, 15 (6), pp.R87. ⟨10.1186/gb-2014-15-6-r87⟩

Article dans une revue hal-02631808v1

Widespread anti-sense transcription in apple is correlated with siRNA production and indicates a large potential for transcriptional and/or post-transcriptional control

Jean-Marc Celton , Sylvain Gaillard , Maryline Bruneau , Sandra Pelletier , Sebastien Aubourg et al.

New Phytologist, 2014, 203 (1), pp.287-299. ⟨10.1111/nph.12787⟩

Article dans une revue hal-01209978v1
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The RNA helicases AtMTR4 and HEN2 target specific subsets of nuclear transcripts for degradation by the nuclear exosome in Arabidopsis thaliana

Heike Lange , Hélène Zuber , François M. Sement , Johanna Chicher , Lauriane Kuhn et al.

PLoS Genetics, 2014, 10 (8), pp.e1004564. ⟨10.1371/journal.pgen.1004564⟩

Article dans une revue hal-01197631v1

Genetic dissection of a TIR-NB-LRR locus from the wild North American grapevine species Muscadinia rotundifolia identifies paralogous genes conferring resistance to major fungal and oomycete pathogens in cultivated grapevine.

Angela Feechan , Claire Anderson , Laurent Torregrosa , Angelica Jermakow , Pere Mestre et al.

The Plant Journal, 2013, 76 (4), pp.661-674. ⟨10.1111/tpj.12327⟩

Article dans une revue hal-01268090v1

Plant Protein Interactomes

Pascal Braun , Sebastien S. Aubourg , Jelle van Leene , Geert de Jaeger , Claire Lurin

Annual Review of Plant Biology, 2013, 64, pp.161 - 187. ⟨10.1146/annurev-arplant-050312-120140⟩

Article dans une revue hal-02647686v1

Structural, functional and evolutionary analysis of the unusually large stilbene synthase gene family in grapevine (Vitis vinifera)

C. Parage , R. Tavares , S. Réty , R. Baltenweck-Guyot , A. Poutaraud et al.

Plant Physiology, 2012, 160, pp.1407-1419

Article dans une revue hal-00753657v1
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Structural, Functional, and Evolutionary Analysis of the Unusually Large Stilbene Synthase Gene Family in Grapevine

Claire Parage , Raquel Tavares , Stéphane Réty , Raymonde Baltenweck-Guyot , Anne A. Poutaraud Naidenov et al.

Plant Physiology, 2012, 160, pp.1407-1419

Article dans une revue hal-02642825v1
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Exploration of plant genomes in the FLAGdb++ environment

Sandra S. Derozier , Franck F. Samson , Jean-Philippe Tamby , Cecile C. Guichard , Veronique V. Brunaud et al.

Plant Methods, 2011, 7 (8), 10 p. ⟨10.1186/1746-4811-7-8⟩

Article dans une revue hal-02652189v1

Integrative epigenomic mapping defines four main chromatin states in Arabidopsis

François Roudier , Ikhlak I. Ahmed , Caroline C. Berard , Alexis A. Sarazin , Tristan Mary-Huard et al.

EMBO Journal, 2011, 30 (10), pp.1928 - 1938. ⟨10.1038/emboj.2011.103⟩

Article dans une revue hal-00999846v1

Unsupervised Classification for Tiling Arrays: ChIP-chip and Transcriptome

Caroline Berard , Marie-Laure Magniette , Veronique Brunaud , Sebastien Aubourg , Stephane Robin

Statistical Applications in Genetics and Molecular Biology, 2011, 10 (1), pp.50. ⟨10.2202/1544-6115.1692⟩

Article dans une revue hal-01190201v1

Integrative epigenomic mapping defines four main chromatin states in Arabidopsis

François Roudier , Ikhlak Ahmed , Caroline Bérard , Alexis Sarazin , Tristan Mary-Huard et al.

The EMBO Journal, 2011, 30 (10), pp.1928-1938. ⟨10.1038/emboj.2011.103⟩

Article dans une revue hal-04383147v1
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Functional annotation, genome organization and phylogeny of the grapevine (Vitis vinifera) terpene synthase gene family based on genome assembly, FLcDNA cloning, and enzyme assays

Diane M. Martin , Sebastien S. Aubourg , Marina B Schouwey , Laurent Daviet , Michel Schalk et al.

BMC Plant Biology, 2010, 10 (226), pp.10. ⟨10.1186/1471-2229-10-226⟩

Article dans une revue hal-02663636v1
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Sélection de variables pour la classification par mélanges gaussiens pour prédire la fonction des gènes orphelins

Cathy Maugis , Marie-Laure Martin-Magniette , Jean-Philippe Tamby , Jean-Pierre Renou , Alain Lecharny et al.

La revue MODULAD, 2009, 40, pp.69-80

Article dans une revue hal-01197529v1

Contrasted Microcolinearity and Gene Evolution Within a Homoeologous Region of Wheat and Barley Species

Nathalie Chantret , Jérôme Salse , François Sabot , Arnaud Bellec , Bastien Laubin et al.

Journal of Molecular Evolution, 2008, 66 (2), pp.138-150. ⟨10.1007/s00239-008-9066-8⟩

Article dans une revue istex hal-04198542v1

Contrasted microcolinearity and gene evolution within a homoeologous region of wheat and barley species

Nathalie Chantret , Jerome Salse , François Sabot , Arnaud Bellec , Bastien Laubin et al.

Journal of Molecular Evolution, 2008, 66 (2), pp.138-150. ⟨10.1007/s00239-008-9066-8⟩

Article dans une revue istex hal-01189382v1
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Unique genes in plants: specificities and conserved features throughout evolution

David Armisén , Alain Lecharny , Sebastien S. Aubourg

BMC Evolutionary Biology, 2008, 8 (280), pp.15. ⟨10.1186/1471-2148-8-280⟩

Article dans une revue hal-02662345v1
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CATdb: a public access to Arabidopsis transcriptome data from the URGV-CATMA platform

Séverine Gagnot , Jean-Philippe Tamby , Marie-Laure Magniette , Frederique Bitton , Ludivine Taconnat et al.

Nucleic Acids Research, 2008, 36, pp.D986-D990. ⟨10.1093/nar/gkm757⟩

Article dans une revue hal-01203869v1
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Genome-scale Arabidopsis promoter array identifies targets of the histone acetyltransferase GCN5

Moussa Benhamed , Marie-Laure Martin-Magniette , Ludivine Taconnat , Frederique Bitton , Caroline Servet et al.

The Plant Journal, 2008, 56 (3), pp.493-504. ⟨10.1111/j.1365-313X.2008.03606.x⟩

Article dans une revue hal-02659090v1

Characterization of Arabidopsis thaliana mismatch specific endonucleases: application to mutation discovery by TILLING in pea

Karine Triques , Bénédicte Sturbois , Stéphane Gallais , Marion Dalmais , Stéphanie Chauvin et al.

The Plant Journal, 2007, 51 (6), pp.1116-1125. ⟨10.1111/j.1365-313X.2007.03201.x⟩

Article dans une revue hal-04077777v1
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Analysis of CATMA transcriptome data identifies hundreds of novel functional genes and improves gene models in the Arabidopsis genome

Sebastien S. Aubourg , Marie-Laure Martin-Magniette , Veronique V. Brunaud , Ludivine Taconnat , Frederique Bitton et al.

BMC Genomics, 2007, 8 (401), pp.1-9. ⟨10.1186/1471-2164-8-401⟩

Article dans une revue hal-02668276v1
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The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.

Olivier Jaillon , Jean-Marc Aury , Benjamin Noel , Alberto Policriti , Christian Clepet et al.

Nature, 2007, 449 (7161), pp.463-7. ⟨10.1038/nature06148⟩

Article dans une revue inria-00180136v1

GeneFarm, structural and functional annotation of Arabidopsis gene and protein families by a network of experts.

S. Aubourg , V. Brunaud , C. Bruyere , M. Cock , R. Cooke et al.

Nucleic Acids Research, 2005, 33, pp.D641-D646

Article dans une revue hal-00313737v1
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GeneFarm, structural and functional annotation of Arabidopsis gene and protein families by a network of experts

Sebastien Aubourg , Veronique Brunaud , Clémence Bruyère , J. Mark Cock , Richard Cooke et al.

Nucleic Acids Research, 2005, 33, pp.D641-D646. ⟨10.1093/nar/gki115⟩

Article dans une revue hal-01189162v1

GeneFarm, structural and functional annotation of Arabidopsis gene and protein families by a network of experts

S. Aubourg , Annick Cottet , Denis Falconet , Régis Mache , Philippe Schwob

Nucleic Acids Research, 2005, 33, pp.D641-D646

Article dans une revue hal-00018165v1

Molecular basis of evolutionary events that shaped the Hardness locus in diploid and polyploid wheat species (Triticum and Aegilops)

Nathalie N. Chantret , Jerome J. Salse , François F. Sabot , Sadequr S. Rahman , Arnaud A. Bellec et al.

The Plant cell, 2005, 17 (4), pp.1033-1045. ⟨10.1105/tpc.104.029181⟩

Article dans une revue hal-00964165v1

Molecular Basis of Evolutionary Events That Shaped the Hardness Locus in Diploid and Polyploid Wheat Species (Triticum and Aegilops)

Nathalie Chantret , Jérôme Salse , François Sabot , Sadequr Rahman , Arnaud Bellec et al.

The Plant cell, 2005, 17 (4), pp.1033-1045. ⟨10.1105/tpc.104.029181⟩

Article dans une revue hal-04198545v1
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Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins reveals their essential role in organelle biogenesis

Claire Lurin , Charles Andres , Sebastien Aubourg , M. Bellaoui , Frédérique Bitton et al.

The Plant cell, 2004, 16 (7), pp.1-15

Article dans une revue hal-02679636v1

Annotation of a 95-kb Populus deltoides genomic sequence reveals a disease resistance gene cluster and novel class I and class II transposable elements

Magali Lescot , S. Rombauts , J. Zhang , S. Aubourg , C. Mathé et al.

TAG Theoretical and Applied Genetics, 2004, 109 (1), pp.10-22. ⟨10.1007/s00122-004-1621-0⟩

Article dans une revue istex hal-02978143v1
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FLAGdb++: a database for the functional analysis of the Arabidopsis genome

Franck Samson , Véronique Brunaud , S. Duchêne , Y. de Oliveira , Michel M. Caboche et al.

Nucleic Acids Research, 2004, 32 (1), pp.347-350. ⟨10.1093/nar/gkh134⟩

Article dans une revue hal-02682811v1

Versatile gene-specific sequence tags for Arabidopsis functional genomics: transcript profiling and reverse genetics applications

Pierre Hilson , Sebastien Aubourg , Alexandra Avon , Frédérique Bitton , Michel M. Caboche et al.

Genome Research, 2004, 14 (10b), pp.2176-2189

Article dans une revue hal-02673981v1

Introns in, introns out in plant gene families: a genomic approach of the dynamics of gene structure.

Alain Lecharny , Nathalie Boudet , Isabelle Gy , Sébastien Aubourg , Martin Kreis

Journal of Structural and Functional Genomics, 2003, 3 (1-4), pp.111-6

Article dans une revue hal-04402783v1
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CATMA: a complete Arabidopsis GST database

M.L. Crowe , K. Serizet , Vincent Thareau , Sebastien Aubourg , Pierre Rouzé et al.

Nucleic Acids Research, 2003, 31 (1), pp.156-158. ⟨10.1093/nar/gkg071⟩

Article dans une revue hal-02681486v1

Automatic design of gene-specific sequence tags for genome-wide functional studies

Vincent Thareau , Patrice Dehais , C. Serizet , Pierre Hilson , Pierre Rouzé et al.

Bioinformatics, 2003, 19 (17), pp.2191-2198. ⟨10.1093/bioinformatics/btg286⟩

Article dans une revue hal-02677651v1

Genomic analysis of the terpenoid synthase (AtTPS) gene family of Arabidopsis thaliana

Sebastien Aubourg , A. Lecharny , J. Bohlmann

Molecular Genetics and Genomics, 2002, 267, pp.730-745. ⟨10.1007/s00438-002-0709-y⟩

Article dans une revue istex hal-02683601v1

T-DNA integration into Arabidopsis genome depends on sequences of pre-insertion sites

Véronique Brunaud , Sandrine Balzergue , Bertrand B. Dubreucq , Sebastien Aubourg , Franck Samson et al.

EMBO Reports, 2002, 3 (12), pp.1152-1157. ⟨10.1093/embo-reports/kvf237⟩

Article dans une revue hal-02682810v1

Evolution of intron/exon structure of DEAD helicase family genes in Arabidopsis, Caenorhabdtitis, and Drosophila

Nathalie Boudet , Sebastien Aubourg , Claire Toffano-Nioche , M. Kreis

Genome Research, 2001, 11, pp.2101-2114

Article dans une revue hal-02672398v1

Genome annotation

Sebastien Aubourg , Pierre Rouzé

Plant Physiology and Biochemistry, 2001, 39, pp.181-193

Article dans une revue hal-02669864v1

Progress in Arabidopsis genome sequencing and functional genomics

R Wambutt , G Murphy , G Volckaert , T Pohl , A Düsterhöft et al.

Journal of Biotechnology, 2000, 78 (3), pp.281-292. ⟨10.1016/s0168-1656(00)00195-4⟩

Article dans une revue istex hal-04402792v1

In Arabidopsis thaliana, 1% of the genome codes for a novel protein family unique to plants

Sébastien Aubourg , Nathalie Boudet , Martin Kreis , Alain Lecharny

Plant Molecular Biology, 2000, 42 (4), pp.603-613. ⟨10.1023/a:1006352315928⟩

Article dans une revue istex hal-04402786v1

Organization and structural evolution of four multigene families in Arabidopsis thaliana: AtLCAD AtLGT AtMYST and AtHD-GL2

R. Tavares , S. Aubourg , A. Lecharny , M. Kreis

Plant Molecular Biology, 2000, 42, pp.703-717

Article dans une revue hal-00427108v1

Structure and expression of three src2 homologues and a novel subfamily of flavoprotein monooxygenase genes revealed by the analysis of a 25kb fragment from Arabidopsis thaliana chromosome IV

Sébastien Aubourg , Alain Picaud , Martin Kreis , Alain Lecharny

Gene, 1999, 230 (2), pp.197-205. ⟨10.1016/s0378-1119(99)00073-6⟩

Article dans une revue istex hal-04402806v1

The DEAD box RNA helicase family in Arabidopsis thaliana

Sébastien Aubourg , M. Kreis , A. Lecharny

Nucleic Acids Research, 1999, 27 (2), pp.628-636. ⟨10.1093/nar/27.2.628⟩

Article dans une revue hal-04402845v1

Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana

K. Mayer , C. Schüller , R. Wambutt , G. Murphy , G. Volckaert et al.

Nature, 1999, 402 (6763), pp.769-777. ⟨10.1038/47134⟩

Article dans une revue hal-04402802v1

Analysis of a 14-kb fragment containing a putative cell wall gene and a candidate for the ARA1, arabinose kinase, gene from chromosome IV of Arabidopsis thaliana

Isabelle Gy , Sébastien Aubourg , Sarah Sherson , Christopher Cobbett , Angélique Cheron et al.

Gene, 1998, 209 (1-2), pp.201-210. ⟨10.1016/s0378-1119(98)00049-3⟩

Article dans une revue istex hal-04402904v1

Analysis of 1.9 Mb of contiguous sequence from chromosome 4 of Arabidopsis thaliana

M. Bevan , I. Bancroft , E. Bent , K. Love , H. Goodman et al.

Nature, 1998, 391 (6666), pp.485-488. ⟨10.1038/35140⟩

Article dans une revue hal-04402918v1

Structure and expression of an asparaginyl-tRNA synthetase gene located on chromosome IV of Arabidopsis thaliana and adjacent to a novel gene of 15 exons

Sébastien Aubourg , Angélique Chéron , Martin Kreis , Alain Lecharny

BBA - Gene Structure and Expression, 1998, 1398 (3), pp.225-231. ⟨10.1016/s0167-4781(98)00068-2⟩

Article dans une revue istex hal-04402885v1

Structure, organization and putative function of the genes identified within a 23.9-kb fragment from Arabidopsis thaliana chromosome IV

Sébastien Aubourg , Alain Takvorian , Angélique Chéron , Martin Kreis , Alain Lecharny

Gene, 1997, 199 (1-2), pp.241-253. ⟨10.1016/s0378-1119(97)00374-0⟩

Article dans une revue istex hal-04402924v1

Estimation of the H+/H− ratio of the reaction catalysed by the nicotinamide nucleotide transhydrogenase in chromatophores from over-expressing strains of Rhodospirillum rubrum and in liposomes inlaid with the purified bovine enzyme

Tania Bizouarn , Leonid Sazanov , Sébastien Aubourg , J. Baz Jackson

Biochimica biophysica acta (BBA) - Bioenergetics, 1996, 1273 (1), pp.4-12. ⟨10.1016/0005-2728(95)00125-5⟩

Article dans une revue hal-04402928v1

Activation of seed defenses through defense priming

Jerome Verdier , Łukasz Paweł Tarkowski , Armelle Darrasse , David Lalanne , Muriel Marchi et al.

International Conference in Plant Pathology (ICPP), Aug 2023, Lyon, France

Communication dans un congrès hal-04665344v1

The SCOOP family of phytocytokines, at the boundaries of plant defense and development

Marie-Charlotte Guillou , Thierry Balliau , Emilie Vergne , Hervé Canut , Josiane Chourré et al.

Genetoberfest 2023, Oct 2023, Berlin, Germany. ⟨10.14293/GOF.23.38⟩

Communication dans un congrès hal-04521892v1

A serine-rich secreted peptide involved in Arabidopsis thaliana root elongation

Marie-Charlotte Guillou , Emilie Vergne , Sophie Aligon , Philippe Grappin , David Rousseau et al.

8th International Meeting on Plant Peptides and Receptors., Sep 2020, Mont Pélerin, Switzerland

Communication dans un congrès hal-03104148v1

Regulation of plant development and defense response by fireman, a new small endogenous peptide

Kay Gully , Sandra Pelletier , Marie-Charlotte Guillou , Sophie Aligon , Emilie Vergne et al.

5th European Workshop on Peptide Signalling in Plants, 2017, Copenhage, Denmark

Communication dans un congrès hal-02516578v1

The rose genome sequencing initiative.

Fabrice Foucher , Laurence Hibrand-Saint Oyant , Latifa Hamama , Tatiana Thouroude , Annie Chastellier et al.

VII International Symposium on Rose Research and Cultivation, Jul 2017, Angers, France

Communication dans un congrès hal-03104072v1

A new signal peptide family in Arabidopsis thaliana.

Sandra Pelletier , Marie-Charlotte Guillou , Kay Gully , M. Ferrand , Philippe Grappin et al.

Congrès IRTA, Feb 2017, Barcelone, Spain

Communication dans un congrès hal-03104253v1

From gene expression modeling to gene network to investigate Arabidopsis thaliana genes involved in stress response

Rim Zaag , Jean-Philippe Tamby , Cécile Guichard , Zakia Tariq , Sébastien Aubourg et al.

The 26th international conference on Arabidopsis research (ICAR2015), Jul 2015, Paris, France

Communication dans un congrès hal-04671451v1
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The grapevine reference genome sequence

Sébastien Aubourg , Nadia Bentahar , Marc Bras , Aurelie A. Canaguier , Nathalie Choisne et al.

IX International Symposium on Grapevine Physiology and Biotechnology, Apr 2013, La Serena, Chile

Communication dans un congrès hal-02811094v1

Identification of phytocytokine-encoding genes induced in response to Erwinia amylovora and the chemical elicitor acibenzolar-S-methyl in apple tree

A. Porquier , Marie-Charlotte Guillou , Matthieu Gaucher , Sandra Pelletier , Emilie Vergne et al.

IS-MPMI 2025, Jul 2025, Cologne, Germany

Poster de conférence hal-05390192v1
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GBOT upgrade : a loci comparison tool dedicated to the exploration of duplications and synteny

Franck Samson , Sébastien Aubourg

JOBIM, Jul 2025, Bordeaux, France

Poster de conférence hal-05164521v1
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GBOT one flew over the ortholog’s nest

Franck Samson , Sébastien Aubourg

Jobim, Jun 2024, Toulouse, France

Poster de conférence hal-04831777v1
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How to explain QTL imbalance between ohnologous chromosomes?

Tanguy Lallemand , Sébastien Aubourg , Gilles Hunault , Jean-Marc Celton , Claudine Landès

JOBIM (Journées Ouvertes en Biologie, Informatique et Mathématiques), Jul 2021, Paris, France

Poster de conférence hal-03635839v1

An Erwinia Amylovora inducible promoter for intragenic improvement of Apple Fire blight resistance

Emilie Vergne , Matthieu Gaucher , Laura Righetti , Sebastien Aubourg , Thomas Duge de Bernonville et al.

10th ROSACEAE GENOMICS CONFERENCE (virtual 2020), Dec 2020, Barcelone, Spain. , pp.Abstract P0059, 2020, Proceedings of the conference (Web)

Poster de conférence hal-03099576v1
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Evolution of ohnologous chromosomes following Whole Genome Duplication in apple

Tanguy Lallemand , Sebastien Aubourg , Gilles Hunault , Jean-Marc Celton , Claudine Landès

Journées Ouvertes de Biologie, Informatique et Mathématique, Sep 2020, Montpellier, France

Poster de conférence hal-02928930v1
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Visualizing metadata change in networks and / or clusters

Tanguy Lallemand , Sylvain Gaillard , Sandra Pelletier , Claudine Landès , Sébastien Aubourg et al.

Journées Ouvertes Biologie, Informatique et Mathématiques (JOBIM), Jul 2019, Nantes, France

Poster de conférence hal-02395309v1

The complete apple genome : Evolutionary events revealed.

Nicolas Daccord , Jean-Marc Celton , G. Linsmith , C. Becker , Nathalie Choisne et al.

XXV Plant and Animal Genome Conference., Jan 2017, San Diego, United States. 2017

Poster de conférence hal-03106053v1

The complete apple genome

Nicolas Daccord , Jean-Marc Celton , E. Schiilen , Henri van de Geest , C. Becker et al.

Journées Ouvertes Biologie Informatique et Mathématiques (JOBIM’2016)., Jun 2016, Lyon, France. 2016

Poster de conférence hal-03106007v1

CORGI : Co-regulated gene investigator.

Sandra Pelletier , Sylvain Gaillard , Sebastien Aubourg , Martin-Magniette Marie-Laure , Veronique Brunaud et al.

Journées Ouvertes Biologie Informatique et Mathématiques (JOBIM’2016), Jun 2016, Lyon, France

Poster de conférence hal-03104271v1
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Populus Genome Portal

Isabelle Bourgait , Farid Ghazali , Vivianne Judith Koyao-Darinest , Véronique Jorge , Franck F. Samson et al.

2. Poplar Symposium, Mar 2009, Göttingen, Germany. , 1 p., 2009

Poster de conférence hal-02820105v1
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Bioinformatics Methods for Prediction of Gene Families Encoding Extracellular Peptides

Loup Tran van Canh , Sébastien Aubourg

Plant Peptide Hormones and Growth Factors, 2731, Springer US, pp.3-21, 2024, Methods in Molecular Biology, Electronic ISSN : 1940-6029. ⟨10.1007/978-1-0716-3511-7_1⟩

Chapitre d'ouvrage hal-04394046v1

Biochemical, Molecular Genetic and Evolutionary Aspects of Defense-Related Terpenoid Metabolism in Conifers

Jörg Bohlmann , Jonathan Gershenzon , Sébastien Aubourg

EVOLUTION OF METABOLIC PATHWAYS, 34, 109-150 (Chap. 5), 2000, Recent Advances in Phytochemistry, 0-08-043860-1; ISSN 0079-9920 : Recent Advances in Phytochemistry. ⟨10.1016/S0079-9920(00)80006-4⟩

Chapitre d'ouvrage hal-04402187v1