Sergio Peignier
Publications
Publications
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Decoding Gene Regulation in Alzheimer's disease with Transfer Learning and Explainable Machine LearningComputational Methods in Systems Biology. CMSB 2025., Sep 2025, Lyon, France. ⟨10.1007/978-3-032-01436-8_14⟩ |
Decoding Gene Regulation in Alzheimer’s Disease with Transfer Learning and Explainable Machine LearningInternational Conference on Computational Methods in Systems Biology, Sep 2025, Villeurbanne, France. pp.258-275, ⟨10.1007/978-3-032-01436-8_14⟩ |
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Specific expansion and diversification of Inhibitors of APoptosis (IAPs) support symbiont maintenance and morph-specific regulation in aphidsXII International Symposium on Aphids (ISA), Oct 2025, Pyeongchang, South Korea |
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Re_actShap : détection de rebranchements des réseaux de régulation d’expression génique à l’aide des valeurs SHAP25ième conference sur l'Extraction et Gestion des Connaissances (EGC), session demonstrations, 2025, Strasbourg, France. pp.8 |
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Combining SHAP-driven Co-clustering and Shallow Decision Trees to Explain XGBoost27. International Conference Discovery Science (DS'24), Oct 2024, Pise, Italy. pp.369-384, ⟨10.1007/978-3-031-78977-9_24⟩ |
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Detecting gene regulatory network rewiring as changes in marker regulatory associations using only single-cell gene expression dataIEEE 12th Data Mining in Biomedical Informatics and Healthcare Workshop (DMBIH'24) at ICDM'24, 2024, Abu Dhabi, United Arab Emirates. pp.10 |
Utilisation de l'IA et des modèles dynamiques à BF2IJournée SPE-Num - Nouvelles approches hybrides couplant IA et modèles dynamiques, Dec 2024, Montpellier, France |
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Unraveling regulatory associations using explainable AIJournée GT Machine learning pour la génomique LEGO à JOBIM 2024, Jun 2024, Toulouse, France |
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Evolutionarily conserved metazoan pathways have evolved new functions and regulate bacteriocytes' dynamics in the context of symbiosisXXVII International Congress of Entomology, Aug 2024, Kyoto, Japan |
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RNAseq analysis reveals new roles for conserved metazoan pathways in the regulation of bacteriocyte dynamics14èmes rencontres du réseau français de Biologie Adaptative des Pucerons et Organismes Associés (BAPOA), Oct 2024, Montpellier, France |
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Repellent and attractant activity of ten plant essential oils and their compounds against the pea aphid54th International Symposium on Essential Oils, Sep 2024, Balatonalmádi, Hungary |
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A genome-wide annotation of transcription factors in the pea aphid, Acyrthosiphon pisum, and the related database, ATFdb13èmes rencontres du réseau français de Biologie Adaptative des Pucerons et Organismes Associés (BAPOA), Nov 2023, Villeurbanne, France |
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Practical workshop on gene regulatory networks inference in Python using the GReNaDIne LibraryWorkshop on chemo-informatics and bio-informatics, Natural Sciences Faculty UMSA (Universidad Mayor de San Andrés), Aug 2023, La Paz, Bolivia |
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Acyrthosiphon pisum tissue-specific gene regulatory network inference13èmes rencontres du réseau français de Biologie Adaptative des Pucerons et Organismes Associés (BAPOA), Nov 2023, Villeurbanne, France |
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Assessing Gene Regulatory Network Inference Algorithms Using Word Embeddings: A Novel Approach for NLP and Systems Biology IntegrationDigital Humanities BeNeLux 2023, Digital Humanities BeNeLux, May 2023, Bruxelles (BE), Belgium |
Filets biosourcés, biodégradables et bioinsectifugesJournée Enjeu Environnement INSA, Oct 2023, Lyon, France |
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Practical workshop on embedding, clustering and classification of molecular structures in PythonWorkshop on chemo-informatics and bio-informatics, Natural Sciences Faculty at UMSA (Universidad Mayor de San Andrés), Aug 2023, La Paz, Bolivia |
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Bioactivity and chemical composition of forty plant essential oils against the pea aphid Acyrthosiphon pisum revealed peppermint oil as a promising biorepellentSéminaire INFECTIOTRON externe MAP, Jun 2023, Lyon, France |
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Repellent Anti-insect Net Based on Biopolymer / Plant Essential Oil Blend as an Alternative to Conventional Chemical PesticidesJournées des doctorants du département SPE INRAE, Jun 2023, Avignon, France |
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Diet as a major driver of endosymbiont dynamic in cereal weevils10th congress of the International Symbiosis Society (ISS) - 3rd International Conference on Holobionts (joint meeting), Jul 2022, Lyon, France |
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Réseaux de régulation géniques : Méthodes d'inférence et questions biologiques dans le modèle puceronPremière rencontre SPE et Numérique, INRAE département SPE, May 2022, Lyon, France |
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Utilisation de méthodes d'apprentissage automatique pour la reconstruction et modélisation de réseaux géniques développementaux chez les bactériocytes d'insectes1er séminaire Métaprogramme DIGIT-BIO, Dec 2022, Ecully, France |
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Apprendre l'apprentissage automatique : un retour d'expérienceCETSIS 2021 - Colloque de l'Enseignement des Technologies et des Sciences de l'Information et des Systèmes, Jun 2021, Valenciennes, France. pp.1-5 |
Ensemble Learning Based Gene Regulatory Network Inference33rd IEEE International Conference on Tools with Artificial Intelligence, Nov 2021, Washington, United States. pp.113-120, ⟨10.1109/ICTAI52525.2021.00024⟩ |
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Détection de pucerons par imagerie hyperspectrale en conditions de laboratoireWebinaire du réseau français de Biologie Adaptative des Pucerons et Organismes Associés (BAPOA), Sep 2021, Virtual, France |
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The Inhibitor of APoptosis (IAP) gene family in aphids: between expansion and functional diversificationWebinaire du réseau français de Biologie Adaptative des Pucerons et Organismes Associés (BAPOA), 2021, Villeurbanne (virtual), France |
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Gene Regulatory Network Inference Using Ensembles of Predictors33rd IEEE International Conference on Tools with Artificial Intelligence, IEEE, Nov 2021, Virtual event, United States |
Analysis of the inhibitor of aPoptosis (IAP) repertoire in insects reveals a complex pattern of gene losses and amplificationsIncontri di diversità delle forme e degli animali, Università di Pisa, 2021, Pisa, Italy |
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Analyzing Open Data to Support Democracy: a Study Case Inspecting Electoral Fraud in Bolivian General ElectionsDigital Humanities BENELUX 2020, Jun 2020, Leiden, Netherlands |
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Data-driven Gene Regulatory Network Inference based on Classification Algorithms31st IEEE International Conference on Tools with Artificial Intelligence, Nov 2019, Portland, Oregon, United States. pp.1065-1072, ⟨10.1109/ICTAI.2019.00149⟩ |
Subspace clustering for situation assessment in aquatic dronesACM/SIGAPP Symposium on Applied Computing, Apr 2019, Limassol, Cyprus |
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Transfer Learning on Decision Tree with Class Imbalance31st IEEE International Conference on Tools with Artificial Intelligence, Nov 2019, Portland, Oregon, United States. pp.1003-1010, ⟨10.1109/ICTAI.2019.00141⟩ |
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Weight-based search to find clusters around medians in subspacesSAC 2018 - ACM Symposium On Applied Computing, Apr 2018, Pau, France. pp.1-10 |
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What can Reveal 1,018 Speeches of Fidel Castro?Digital Humanities BeNeLux 2018, Jun 2018, Amsterdam, Netherlands |
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EvoMove: Evolutionary-based living musical companionEuropean Conference on Artificial Life (ECAL), Sep 2017, Villeurbanne, France. pp.1-8 |
A Commensal Architecture for Evolving Living InstrumentsConference on Computer Simulation of Musical Creativity, Jun 2016, Huddersfield, United Kingdom. pp.1-8 |
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Subspace Clustering for all SeasonsEvoEvo Workshop (satellite workshop of ECAL 2015), Jul 2015, york, United Kingdom. pp.1-3 |
Subspace Clustering Using Evolvable Genome StructureGenetic and Evolutionary Computation Conference (GECCO), Jul 2015, Madrid, Spain. pp.575-582 |
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GSHAPA: Gene Set Analysis for Single-Cell RNAseq Using Random Forest and SHAP ValuesSAC '25: 40th ACM/SIGAPP Symposium on Applied Computing, Mar 2025, Catania Italy, Italy. ACM, pp.194-200, 2025, ⟨10.1145/3672608.3707901⟩ |
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GReNaDIne+: Generalization-Aware Gene Regulatory Networks Inference23rd International Conference on Computational Methods in Systems Biology, CMSB 2025, Sep 2025, Villeurbanne, France |
Origin and evolution of Inhibitors of apoptosis (IAPs) in early metazoansEVOLYON 2025, Nov 2025, Villeurbanne, France |
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Origin and evolution of Inhibitors of apoptosis (IAP) in early metazoansJacque Monod conference, Molecular basis for membrane remodelling and organisation, Jun 2025, Roscoff, France |
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How advanced microscopy tools are uncovering unexpected ways of exchanging nutrients in insect symbiosis13èmes Journées Scientifiques et Techniques du Réseau des Microscopistes INRAE, Nov 2024, Villenave d'Ornon, France |
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Advanced microscopy tools unravel bacterial “pipelines”that enhance carbohydrates uptake by endosymbionts in cereal weevil10th congress of the International Symbiosis Society (ISS) - 3rd International Conference on Holobionts (joint meeting), Jul 2022, Lyon, France |
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From genomes to metabolism reconstruction: companion collections of databases to study symbiotic interactions between insects and their bacterial symbionts.12èmes rencontres du réseau français de Biologie Adaptative des Pucerons et Organismes Associés (BAPOA), May 2022, Nice, France |
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Bacteriocytes and the interorgan communication network regulating physiology and metabolism of the pea aphid10th congress of the International Symbiosis Society (ISS) - 3rd International Conference on Holobionts (joint meeting), Jul 2022, Lyon, France |
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Semi-supervised learning for tree-based regressors to improve the prediction of the interactions between genesSymposium MaDICS, Jul 2022, Lyon, France |
From genomes to metabolism reconstruction: companion collections of databases to study symbiotic interactions between insects and their bacterial symbionts10th congress of the International Symbiosis Society (ISS) - 3rd International Conference on Holobionts (joint meeting), Jul 2022, Lyon, France |
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Unbalanced diet coupled with disrupted symbiont metabolism impairs cuticle synthesis in Sitophilus oryzaeThe Rise and Fall of Mutualisms, Oct 2021, Mayence (Mainz), Germany |
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Étude des mécanismes d’échanges métaboliques entre bactéries et hôte dans un insecte symbiotique par des techniques de microscopie ultrastructurale.10èmes Journées Scientifiques et Techniques du Réseau des Microscopistes INRAE, Nov 2021, Tours, France |
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From genomes to metabolism reconstruction: companion collections of databases to study symbiotic interactions between insects and their bacterial symbionts13. Réunion du Réseau Français de Biologie Adaptative des Pucerons et Organismes Associés (BAPOA), 2020, Nice (virtuel), France |
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Análisis del Discurso Socialista Latinoamericano Basado en Inteligencia ArtificialInstituto Internacional de Integración Convenio Andrés Bello, 2017, 978-99974-74-06-3 |
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Comprehensive annotation of transcription factors, chromatin-associated factors, and basal transcription machinery in the pea aphid, Acyrthosiphon pisum2024 |
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Frequent Itemsets and Clustering Unravel the Evolution of Evo Morales Discursive Strategies2023 |
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GReNaDIne: Data-Driven Approaches to Infer Gene Regulatory Networks in Python2020 |
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Budget learning based on equivalent trees and genetic algorithm : application to fall detection algorithm embedding2020 |
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EvoEvo Deliverable 5.2[Research Report] INRIA Grenoble - Rhône-Alpes. 2016 |
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EvoEvo Deliverable 5.1[Research Report] INRIA Grenoble - Rhône-Alpes. 2016 |