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Sèverine Bérard

29
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Publications

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Evolutionary superscaffolding and chromosome anchoring to improve Anopheles genome assemblies

Robert Waterhouse , Sergey Aganezov , Yoann Anselmetti , Jiyoung Lee , Livio Ruzzante
BMC Biology, 2020, 18 (1), pp.1-20. ⟨10.1186/s12915-019-0728-3⟩
Journal articles hal-02455139v1
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Efficient algorithms for Longest Common Subsequence of two bucket orders to speed up pairwise genetic map comparison

Lisa de Mattéo , Yan Holtz , Vincent Ranwez , Sèverine Bérard
PLoS ONE, 2018, 13 (12), pp.e0208838. ⟨10.1371/journal.pone.0208838⟩
Journal articles hal-02134202v1
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Phylogenetic signal from rearrangements in 18 Anopheles species by joint scaffolding extant and ancestral genomes

Yoann Anselmetti , Wandrille Duchemin , Eric Tannier , Cedric Chauve , Sèverine Bérard
BMC Genomics, 2018, 19 (S2), pp.1-15. ⟨10.1186/s12864-018-4466-7⟩
Journal articles hal-01791884v1
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DeCoSTAR: Reconstructing the ancestral organization of genes or genomes using reconciled phylogenies

Wandrille Duchemin , Yoann Anselmetti , Murray Patterson , Yann Ponty , Sèverine Bérard
Genome Biology and Evolution, 2017, 9 (5), pp.1312-1319. ⟨10.1093/gbe/evx069⟩
Journal articles hal-01503766v2
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Aligning the unalignable: bacteriophage whole genome alignments

Sèverine Bérard , Annie Chateau , Nicolas Pompidor , Paul Guertin , Anne Bergeron
BMC Bioinformatics, 2016, 17 (1), pp.30-43. ⟨10.1186/s12859-015-0869-5⟩
Journal articles lirmm-01275670v1
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Ancestral gene synteny reconstruction improves extant species scaffolding

Yoann Anselmetti , Vincent Berry , Cedric Chauve , Annie Chateau , Eric Tannier
BMC Genomics, 2015, 16 (Suppl 10), pp.S11. ⟨10.1186/1471-2164-16-S10-S11⟩
Journal articles hal-01180303v2

Evolution of gene neighborhoods within reconciled phylogenies

Sèverine Bérard , Coralie Gallien , Bastien Boussau , Gergely J Szöllosi , Vincent Daubin
Bioinformatics, 2012, 28 (18), pp.i382-i388. ⟨10.1093/bioinformatics/bts374⟩
Journal articles hal-00733178v1

Equation or algorithm: differences and choosing between them

Cédric Gaucherel , Sèverine Bérard , François Munoz
Acta Biotheoretica, 2011, 59 (1), pp.67-79. ⟨10.1007/s10441-010-9119-4⟩
Journal articles halsde-00611729v1

Computation of Perfect DCJ Rearrangement Scenarios with Linear and Circular Chromosomes

Sèverine Bérard , Annie Chateau , Cedric Chauve , Christophe Paul , Eric Tannier
Journal of Computational Biology, 2009, 16 (10), pp.1287-1309. ⟨10.1089/cmb.2009.0088⟩
Journal articles lirmm-00432670v1

SimCT: a generic tool to visualize ontology-based relationships for biological objects.

Carl Herrmann , Sèverine Bérard , Laurent Tichit
Bioinformatics, 2009, 25 (23), pp.3197-8. ⟨10.1093/bioinformatics/btp553⟩
Journal articles halsde-00454253v1

A More Efficient Algorithm for Perfect Sorting by Reversals

Sèverine Bérard , Cedric Chauve , Christophe Paul
Information Processing Letters, 2008, 106, pp.90-95. ⟨10.1016/j.ipl.2007.10.012⟩
Journal articles lirmm-00274051v1

Perfect Sorting by Reversals is not Always Difficult

Christophe Paul , Sèverine Bérard , Anne Bergeron , Cedric Chauve
IEEE/ACM Transactions on Computational Biology and Bioinformatics, 2007, 4 (1), pp.12. ⟨10.1109/TCBB.2007.1011⟩
Journal articles lirmm-00111979v1
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A Fast and Specific Alignment Method for Minisatellite Maps

Sèverine Bérard , François Nicolas , Jérome Buard , Olivier Gascuel , Eric Rivals
Evolutionary Bioinformatics, 2006, 2, pp.327-344. ⟨10.1177/117693430600200025⟩
Journal articles lirmm-00120145v1

Comparison of Minisatellites

Sèverine Bérard , Eric Rivals
Journal of Computational Biology, 2003, 10 (3-4), pp. 357-372. ⟨10.1145/565196.565205⟩
Journal articles lirmm-00269555v1
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Comment la reconstruction de génomes ancestraux peut aider à l'assemblage de génomes actuels

Yoann Anselmetti , Vincent Berry , Cedric Chauve , Annie Chateau , Eric Tannier
Journées Ouvertes Biologie Informatique Mathématiques, 2016, Lyon, France
Conference papers hal-01394409v1
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Perfect DCJ rearrangement

Annie Chateau , Cedric Chauve , Sèverine Bérard , Eric Tannier , Christophe Paul
RECOMB-CG: Comparative Genomics, Oct 2008, Paris, France. pp.158-169, ⟨10.1007/978-3-540-87989-3_12⟩
Conference papers lirmm-00327258v1
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ClusterInspector: a tool to visualize ontology-based relationships between biological entities

Sèverine Bérard , Laurent Tichit , Carl Herrmann
Les Journées Ouvertes en Biologie, Informatique et Mathématiques Actes de {JOBIM}' 2005, Jul 2005, Lyon, France
Conference papers hal-04145768v1
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Perfect Sorting by Reversal is not Always Difficult

Sèverine Bérard , Anne Bergeron , Cédric Chauve , Christophe Paul
WABI: Workshop on Algorithms in Bioinformatics, Oct 2005, Mallorca, Spain. pp.228-238, ⟨10.1007/11557067_19⟩
Conference papers lirmm-00106465v1
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Alignement de Séquences avec des Opérations non-Communicatives

Sèverine Bérard
Francoro IV: 4ième Conférence Internationale en Recherche Opérationnelle, Aug 2004, Fribourg, Suisse
Conference papers lirmm-00109129v1
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Conservation of Combinatorial Structures in Evolution Scenarios

Sèverine Bérard , Anne Bergeron , Cedric Chauve
RECOMB-CG: Comparative Genomics, Oct 2004, Bertinoro, Italy. pp.1-14, ⟨10.1007/978-3-540-32290-0_1⟩
Conference papers lirmm-00108819v1
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Comparaison de Séquences avec Amplifications et Contractions

Sèverine Bérard , Eric Rivals
ROADEF 2003 - 4e Congrès de la Société Française de Recherche Opérationnelle et d'Aide à la Décision, 2003, Avignon, France. pp.169-170
Conference papers lirmm-00269459v1

Comparaison de Minisatellites

Sèverine Bérard , Eric Rivals
JOBIM 2002 - 3es Journées Ouvertes en Biologie, Informatique et Mathématiques, Jun 2002, St Malo, France. pp.261-262
Conference papers lirmm-00268469v1
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Comparison of Minisatellites

Sèverine Bérard , Eric Rivals
RECOMB 2002 - 6th International Conference on Computational Molecular Biology, Apr 2002, Whashington, DC, United States. pp.67-76, ⟨10.1145/565196.565205⟩
Conference papers lirmm-00090351v1

Comparaison de Minisatellites

Sèverine Bérard , Eric Rivals
Réunion Annuelle du Groupe de Génétique et Biologie des Populations, Aug 2002, Montpellier, France. pp.128
Conference papers lirmm-00269317v1
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Ancestral Genome Organization as a Diagnosis Tool for Phylogenomics

Eric Tannier , Adelme Bazin , Adrián Davín , Laurent Guéguen , Sèverine Bérard
Scornavacca, Celine; Delsuc, Frédéric; Galtier, Nicolas. Phylogenetics in the Genomic Era, No commercial publisher | Authors open access book, pp.2.5:1--2.5:19, 2020
Book sections hal-02535466v1
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Comparative Methods for Reconstructing Ancient Genome Organization

Yoann Anselmetti , Nina Luhmann , Sèverine Bérard , Eric Tannier , Cedric Chauve
Comparative Genomics: Methods and Protocols, pp.343 - 362, 2017, ⟨10.1007/978-1-4939-7463-4_13⟩
Book sections hal-03192460v1
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Comparaison de séquences répétées en tandem et application à la génétique

Sèverine Bérard
Autre [cs.OH]. Université Montpellier II - Sciences et Techniques du Languedoc, 2003. Français. ⟨NNT : ⟩
Theses tel-00005930v1
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Histoires évolutives et autres comptes. Algorithmes et graphes pour la bioinformatique

Sèverine Bérard
Bio-informatique [q-bio.QM]. Université de Montpellier, 2016
Habilitation à diriger des recherches tel-02144135v1