Sophie Colombié
90
Documents
Publications
Metabolic fluxes estimated by constraint-based modelling highlight specific response of susceptible tomato (Solanum lycopersicum) stems infected by Botrytis cinerea under gradual nitrogen nutrition15. journées scientifiques du RFMF, Réseau francophone de métabolomique et fluxomique, May 2023, Perpignan, France
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Increased metabolic fluxes in tomato stems infected by Botrytis cinerea18. International Botrytis Symposium & 17. International Sclerotinia Workshop, Unité de pathologie végétale, Avignon, INRAE; Unité de recherche Plantes et systèmes de culture horticoles, INRAE; Unité Biologie gestion des risques en agriculture, INRAE; Avignon université, Jun 2022, Avignon, France
Conference papers
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High expression of sucrose synthase and fructokinase genes accompanies the nitrogen-dependent resistance of tomato stems to Botrytis cinereaWorkshop on sugar allocation in plants, IJPB (Institut Jean Pierre Bourgin) - INRAE Versailles; EBI (Ecologie et Biologie des Interactions, CNRS/Université de Poitiers); Team SEVE (Laboratory CNRS-University, Transport de sucres et réponses des plantes aux contraintes abiotiques) - University of Poitiers., Oct 2021, Versailles, France
Conference papers
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An integrated fruit model toolkit: combining fruit biophysical processes with central carbon metabolismSymposium on Advanced Technologies and Management for Innovative Greenhouses: GreenSys2019, Jun 2019, Angers, France. pp.401-410, ⟨10.17660/ActaHortic.2020.1296.52⟩
Conference papers
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Peptide filtering differently affects the performances of XIC-based quantifcation methodsJournées Protéome Vert, Apr 2018, Paris, France
Conference papers
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HSM a reduced model of Central Carbon Metabolism: a dynamical approachadvances in Systems and Synthetic Biology, Mar 2017, Lyon, France
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Integrative and predictive biology outside the plant: linking computational tools to fleshy fruit systemsColloque Biologie synthétique et systémique, BioSynSys, Jun 2016, Bordeaux, France
Conference papers
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Human-Scale Metabolic Network of Central Carbon Metabolism: application to serine metabolism from glutamine in Cancer Cellsadvances in Systems and Synthetic Biology, Mar 2016, Evry, France
Conference papers
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Flux balance modelling in developing tomato fruit: the respiration climacteric as an emergent property10. journées scientifiques du Réseau Francophone de Métabolomique et Fluxomique RFMF 2016, Réseau Francophone de Métabolomique et Fluxomique (RFMF). FRA., May 2016, Montpellier, France
Conference papers
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Cellular and subcellular metabolomics reveal changes during tomato leaf development9. Journées scientifiques du RFMF, Réseau Francophone de Métabolomique et Fluxomique (RFMF). FRA., Jun 2015, Lille, France
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Reconstruction du réseau métabolique de la tomate9. Journées scientifiques du RFMF, Réseau Francophone de Métabolomique et Fluxomique (RFMF). FRA., Jun 2015, Lille, France
Conference papers
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Using metabolomic approaches and modelling of central metabolic to study fleshy fruit quality1. International Symposium on Metabolomics in Mexico, Jun 2015, Guadalajara, Mexico. 2 p
Conference papers
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Using developmental and diurnal compositional changes of tomato to study metabolism8. Journées Scientifiques du Réseau Français de Métabolomique et Fluxomique RFMF, May 2014, Lyon, France. 1 p
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Systematic study of a metabolic networkadvances in Systems and Synthetic Biology, Mar 2014, Evry, France. 173 p
Conference papers
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Modelling fluxes and metabolic network analysis of developing tomato fruitsBordeaux Computational Biology and Bioinformatics, Nov 2014, Bordeaux, France
Conference papers
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Using Topological Analysis to Study Metabolism of Heterotrophic Plant Cell NetworkBioNetVisA workshop (join with ECCB conference,, Oct 2014, Strasbourg, France
Conference papers
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MetaboHUB and RFMF : two tools at the service of metabolomics and fluxomics in FranceMERLION Metabolomics Workshop Singapore 2014, Nov 2014, Singapour, Singapore
Conference papers
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La métabolomique : un outil de la génomique fonctionnelle au service de la biologie des systèmes8e Congrès Jeunes Chercheurs de la SFBV, Société Française de Biologie Végétale (SFBV). FRA., Jun 2014, Tours, France. 1 p
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MetaboHUB: a national infrastructure dedicated to metabolomics and fluxomics7. Journées scientifiques du Réseau Français de Métabolomique et de Fluxomique (RFMF), Jun 2013, Amiens, France
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MetaboHUB: a french infrastructure dedicated to metabolomics and fluxomicsMetabolomics 2013 - 9. Annual conference of the Metabolomics Society, Jul 2013, Glasgow, United Kingdom
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MetaboHUB: une infrastructure nationale au service de la métabolomiqueSéance thématique "La métabolomique : son application en recherche pharmaceutique et diagnostique", Académie Nationale de Pharmacie. FRA., Feb 2013, Paris, France
Conference papers
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The tomato fruit development with a constraint-based modelMetabolic Pathway Analysis 2013, Sep 2013, Oxford, United Kingdom
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Implication of the vacuolar AtPAP26 in the sugars metabolism in Arabidopsis thaliana roots5. Journées scientifiques du Réseau Français de Métabolomique et Fluxomique, Labo/service de l'auteur, Ville service., May 2011, Paris, France
Conference papers
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Elementary flux mode analysis of the central metabolism of plant cells7. International workshop on Computational Systems Biology, Jun 2010, Luxembourg, Luxembourg
Conference papers
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Elementary mode analysis of the central metabolism of plant cells4. Journées scientifiques du Réseau Français de Métabolomique et Fluxomique, May 2010, Marseille, France
Conference papers
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Identification of functional hubs through metabolic networks12. International conference on the synthesis and simulation of lifing systems, Aug 2010, Odense, Denmark
Conference papers
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TIM/WIM: A Set of Tools to Interface Modelling in Biology.European Conference on Object-Oriented Programming, Jul 2009, Genova, Italy
Conference papers
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TIM, une interface de saisie pour les données du métabolisme3. Journées scientifiques RFMF, Feb 2008, Bordeaux, France
Conference papers
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Mise en place d'une approche de fluxomique dans le fruit de tomate3. Journées, Feb 2008, Bordeaux, France
Conference papers
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Quantification de flux métaboliques dans le fruit de tomate2. Journées, Dec 2006, Saint Sauves d'Auvergne, France
Conference papers
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Metabolic Network Reconstruction and Their Topological AnalysisPlant Metabolic Flux Analysis,, 2014
Book sections
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Metabolic network reconstruction and their topological analysisPlant Metabolic Flux Analysis : Methods and Protocols, 1090, Springer Science+Business Media, 2014, Methods in Molecular Biology, 978-1-62703-687-0. ⟨10.1007/978-1-62703-688-7_2⟩
Book sections
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From fruit growth to ripening in plantain: a careful balance between carbohydrate synthesis and breakdown2021
Preprints, Working Papers, ...
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De l’optimisation de bioprocédés à l'étude du métabolisme des fruits axée sur la modélisationBiologie végétale. Université de Bordeaux, 2016
Habilitation à diriger des recherches
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