
Sophie Colombié
101
Documents
Publications
Publications
Comparative constraint-based modelling of fruit development across species highlights nitrogen metabolism in the growth- defence trade-offJOBIM 2024 - Journées Ouvertes en Biologie, Informatique et Mathématiques, Jun 2024, Toulouse, France
Communication dans un congrès
hal-04677435
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Metabolic fluxes estimated by constraint-based modelling highlight specific response of susceptible tomato (Solanum lycopersicum) stems infected by Botrytis cinerea under gradual nitrogen nutrition15. Journées scientifiques du réseau francophone de métabolomique et fluxomique (RFMF), Réseau francophone de métabolomique et fluxomique, May 2023, Perpignan, France
Communication dans un congrès
hal-04185066
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Increased metabolic fluxes in tomato stems infected by Botrytis cinerea18. International Botrytis Symposium & 17. International Sclerotinia Workshop, Unité de pathologie végétale, Avignon, INRAE; Unité de recherche Plantes et systèmes de culture horticoles, INRAE; Unité Biologie gestion des risques en agriculture, INRAE; Avignon université, Jun 2022, Avignon, France
Communication dans un congrès
hal-03695796
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High expression of sucrose synthase and fructokinase genes accompanies the nitrogen-dependent resistance of tomato stems to Botrytis cinereaWorkshop on sugar allocation in plants, IJPB (Institut Jean Pierre Bourgin) - INRAE Versailles; EBI (Ecologie et Biologie des Interactions, CNRS/Université de Poitiers); Team SEVE (Laboratory CNRS-University, Transport de sucres et réponses des plantes aux contraintes abiotiques) - University of Poitiers., Oct 2021, Versailles, France
Communication dans un congrès
hal-03681107
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An integrated fruit model toolkit: combining fruit biophysical processes with central carbon metabolismSymposium on Advanced Technologies and Management for Innovative Greenhouses: GreenSys2019, Jun 2019, Angers, France. pp.401-410, ⟨10.17660/ActaHortic.2020.1296.52⟩
Communication dans un congrès
hal-03125090
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Peptide filtering differently affects the performances of XIC-based quantifcation methodsJournées Protéome Vert, Apr 2018, Paris, France
Communication dans un congrès
hal-03879922
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HSM a reduced model of Central Carbon Metabolism: a dynamical approachadvances in Systems and Synthetic Biology, Mar 2017, Lyon, France
Communication dans un congrès
hal-01709748
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Human-Scale Metabolic Network of Central Carbon Metabolism: application to serine metabolism from glutamine in Cancer Cellsadvances in Systems and Synthetic Biology, Mar 2016, Evry, France
Communication dans un congrès
hal-01709760
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Integrative and predictive biology outside the plant: linking computational tools to fleshy fruit systemsColloque Biologie synthétique et systémique, BioSynSys, Jun 2016, Bordeaux, France
Communication dans un congrès
hal-02739719
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Flux balance modelling in developing tomato fruit: the respiration climacteric as an emergent property10. journées scientifiques du Réseau Francophone de Métabolomique et Fluxomique RFMF 2016, Réseau Francophone de Métabolomique et Fluxomique (RFMF). FRA., May 2016, Montpellier, France
Communication dans un congrès
hal-02740471
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Cellular and subcellular metabolomics reveal changes during tomato leaf development9. Journées scientifiques du RFMF, Réseau Francophone de Métabolomique et Fluxomique (RFMF). FRA., Jun 2015, Lille, France
Communication dans un congrès
hal-02740382
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Using metabolomic approaches and modelling of central metabolic to study fleshy fruit quality1. International Symposium on Metabolomics in Mexico, Jun 2015, Guadalajara, Mexico. 2 p
Communication dans un congrès
hal-02800371
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Reconstruction du réseau métabolique de la tomate9. Journées scientifiques du RFMF, Réseau Francophone de Métabolomique et Fluxomique (RFMF). FRA., Jun 2015, Lille, France
Communication dans un congrès
hal-02742882
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La métabolomique : un outil de la génomique fonctionnelle au service de la biologie des systèmes8e Congrès Jeunes Chercheurs de la SFBV, Société Française de Biologie Végétale (SFBV). FRA., Jun 2014, Tours, France. 1 p
Communication dans un congrès
hal-02801036
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Using developmental and diurnal compositional changes of tomato to study metabolism8. Journées Scientifiques du Réseau Français de Métabolomique et Fluxomique RFMF, May 2014, Lyon, France. 1 p
Communication dans un congrès
hal-02793195
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Modelling fluxes and metabolic network analysis of developing tomato fruitsBordeaux Computational Biology and Bioinformatics, Nov 2014, Bordeaux, France
Communication dans un congrès
hal-02796388
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Systematic study of a metabolic networkadvances in Systems and Synthetic Biology, Mar 2014, Evry, France. 173 p
Communication dans un congrès
hal-01108859
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Using Topological Analysis to Study Metabolism of Heterotrophic Plant Cell NetworkBioNetVisA workshop (join with ECCB conference,, Oct 2014, Strasbourg, France
Communication dans un congrès
hal-02000486
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MetaboHUB and RFMF : two tools at the service of metabolomics and fluxomics in FranceMERLION Metabolomics Workshop Singapore 2014, Nov 2014, Singapour, Singapore
Communication dans un congrès
hal-02798242
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The tomato fruit development with a constraint-based modelMetabolic Pathway Analysis 2013, Sep 2013, Oxford, United Kingdom
Communication dans un congrès
hal-02804536
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MetaboHUB: une infrastructure nationale au service de la métabolomiqueSéance thématique "La métabolomique : son application en recherche pharmaceutique et diagnostique", Académie Nationale de Pharmacie. FRA., Feb 2013, Paris, France
Communication dans un congrès
hal-01002248
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MetaboHUB: a national infrastructure dedicated to metabolomics and fluxomics7. Journées scientifiques du Réseau Français de Métabolomique et de Fluxomique (RFMF), Jun 2013, Amiens, France
Communication dans un congrès
hal-01002241
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MetaboHUB: a french infrastructure dedicated to metabolomics and fluxomicsMetabolomics 2013 - 9. Annual conference of the Metabolomics Society, Jul 2013, Glasgow, United Kingdom
Communication dans un congrès
hal-01002247
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Implication of the vacuolar AtPAP26 in the sugars metabolism in Arabidopsis thaliana roots5. Journées scientifiques du Réseau Français de Métabolomique et Fluxomique, Labo/service de l'auteur, Ville service., May 2011, Paris, France
Communication dans un congrès
hal-02749345
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Elementary flux mode analysis of the central metabolism of plant cells7. International workshop on Computational Systems Biology, Jun 2010, Luxembourg, Luxembourg
Communication dans un congrès
hal-02752087
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Elementary mode analysis of the central metabolism of plant cells4. Journées scientifiques du Réseau Français de Métabolomique et Fluxomique, May 2010, Marseille, France
Communication dans un congrès
hal-02752805
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Identification of functional hubs through metabolic networks12. International conference on the synthesis and simulation of lifing systems, Aug 2010, Odense, Denmark
Communication dans un congrès
hal-02754488
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TIM/WIM: A Set of Tools to Interface Modelling in Biology.European Conference on Object-Oriented Programming, Jul 2009, Genova, Italy
Communication dans un congrès
hal-00629019
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Mise en place d'une approche de fluxomique dans le fruit de tomate3. Journées, Feb 2008, Bordeaux, France
Communication dans un congrès
hal-02757883
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TIM, une interface de saisie pour les données du métabolisme3. Journées scientifiques RFMF, Feb 2008, Bordeaux, France
Communication dans un congrès
hal-02752505
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Quantification de flux métaboliques dans le fruit de tomate2. Journées, Dec 2006, Saint Sauves d'Auvergne, France
Communication dans un congrès
hal-02757225
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Large scale plant protein turnover measurementAnnual ASMS conference, Jun 2024, Anaheim (CA), United States
Poster de conférence
hal-04590280
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Metabolic characterization and flux modeling of the green microalga Coelastrella sp. in response to uranium-induced stress16èmes journées scientifiques du Réseau Francophone de Métabolomique et Fluxomique, Jun 2024, Saint-Malo, France
Poster de conférence
hal-04926997
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Detailed characterization of the responses and adaptation of a green microalga to heavy meta-induced stress15èmes journées scientifiques du Réseau Francophone de Métabolomique et Fluxomique, May 2023, Perpignan, France
Poster de conférence
hal-04926963
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Using metabolomics and predictive metabolomic to study the physiology of an old rustic oilseed plant.Metabolomics 2023, Jun 2023, Niagara falls, Canada
Poster de conférence
hal-04396004
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Nitrogen-mediated metabolic patterns of susceptibility to Botrytis cinerea infection in tomato (Solanum lycopersicum) stems15. Journées scientifiques du réseau francophone de métabolomique et fluxomique (RFMF), May 2023, Perpignan, France
Poster de conférence
hal-04185467
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Primary metabolism investigation of fleshy fruit species using 1H-NMR profilingEUROMAR - European Magnetic Resonance Meeting, Jul 2018, Nantes, France. 2018
Poster de conférence
hal-02737961
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Comparative study of primary metabolite patterns in diverse fleshy fruit speciesMetaboMeeting, Dec 2017, Birmingham (UK), United Kingdom
Poster de conférence
hal-04955742
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Multiscale Fruit Modeling: integrating biophysical fruit growth with biochemical metabolisms in 10 fruits2. Annual Crops in silico Symposium and Workshop, Jun 2017, Oxford, United Kingdom. 2017
Poster de conférence
hal-02735987
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The timing of shifts in the transcriptome and proteome in relation to metabolic state during tomato fruit developmentMetabolomics 2016. 12. Annual Conference of the Metabolomics Society, Jun 2016, Dublin, Ireland. , 2016
Poster de conférence
hal-01603579
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How to optimize metabolites concentrations and fluxes in a metabolic pathway? Backgrounds and BasicsInternational Study Group for Systems Biology meeting (ISGSB 2016) , Oct 2016, Jena, Germany.
Poster de conférence
hal-01445608
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Characterization of a plant cell suspension culture of Vitis vinifera: biomass composition assessment before C13-metabolic flux analysis10. journées scientifiques du Réseau Francophone de Métabolomique et Fluxomique RFMF 2016, May 2016, Montpellier, France. 2016
Poster de conférence
hal-02741756
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Assessment of metabolome compartmentation changes during tomato leaf development using nonaqueous fractionation12. Solanaceae Conference SOL 2015, Oct 2015, Bordeaux, France. 2015, SOL 2015 - Book of abstracts
Poster de conférence
hal-01603745
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Modelling metabolic fluxes during tomato fruit development12. Solanaceae Conference SOL 2015, Oct 2015, Bordeaux, France. 2015, SOL 2015
Poster de conférence
hal-01601445
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Combining MS and proton NMR metabolomic profiling during tomato fruit development to study environment effect on metabolism12. Solanaceae Conference SOL 2015, Oct 2015, Bordeaux, France. 2015, SOL 2015 - Book of abstracts
Poster de conférence
hal-01606414
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Combining MS and NMR metabolomic profiling during tomato fruit development to study environment effect on metabolism9. Journées scientifiques du RFMF, Jun 2015, Lille, France. 2015
Poster de conférence
hal-02739251
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Hub Reactions in Storage of Selected Compounds in Heterotrophic Plant Cell NetworkMetabolic Pathway Analysis 2015, Jun 2015, Braga, Portugal. , 1 p., 2015
Poster de conférence
hal-02793442
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Primary metabolism intermediates of two tomato leaf tissues in contrasted light intensity conditions9. Journées scientifiques du RFMF, Jun 2015, Lille, France. 2015
Poster de conférence
hal-02740588
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Reconstruction du réseau métabolique de la tomate9. Journées scientifiques du RFMF, Jun 2015, Lille, France. 2015
Poster de conférence
hal-02742705
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Combining metabolite and enzymatic profiling during tomato fruit development8. Journées Scientifiques du Réseau Français de Métabolomique et Fluxomique RFMF, May 2014, Lyon, France. 1 p., 2014
Poster de conférence
hal-02793996
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Flux balance analysis highlights cell energy and redox status as metabolic drivers for anthocyanin accumulation in grapevine GT3 cells under nitrogen starvationMacrowine 2014, Sep 2014, Stellenbosch, South Africa. 2014
Poster de conférence
hal-02739299
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Reconstruction du réseau métabolique de la tomate8. Journées Scientifiques du Réseau Français de Métabolomique et Fluxomique RFMF, May 2014, Lyon, France. 1 p., 2014
Poster de conférence
hal-02799581
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Flux Balance Analysis metabolic modelling highlights cell energy and redox status as a metabolic driver for anthocyanin accumulation in grapevine GT3 cells under nitrogen starvationICP 2014 - XXVIIth International Conference on Polyphenols, Sep 2014, Nagoya, Japan. 2014
Poster de conférence
hal-02792547
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Towards a system biology approach of the effect of different levels of nitrogen supply on anthocyanin accumulation in grapevine cell suspensionsPlant Biology 2013, Jul 2013, Rhode Island, United States. 2013
Poster de conférence
hal-02804615
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Kinetic modelling of the metabolism and compartmentation of sugars during tomato fruit developmentMetabolic Pathway Analysis 2013, Sep 2013, Oxford, United Kingdom. 2013
Poster de conférence
hal-02809066
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Minimal cut sets and its application to study metabolic pathway structuresThematic Research School on the Advances in Systems and Synthetic Biology - Modelling Complex Biological Systems in the Context of Genomics, Mar 2013, La Colle-sur-Loup, France. 2013
Poster de conférence
hal-02805827
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Heterotrophic plant cell network analysis: comparison between EFMs and MCSsMetabolic Pathway Analysis 2013, Sep 2013, Oxford, United Kingdom. , 2013
Poster de conférence
hal-02804631
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A systems biology approach for the effect of nitrogen supply on anthocyanin accumulation in grapevine cell suspensions7. Journées scientifiques du Réseau Français de Métabolomique et Fluxomique, Jun 2013, Amiens, France. 2013
Poster de conférence
hal-02810027
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Analysis of metabolic networks using minimal cut set computtingInternational Study Group for Systems Biology, Sep 2012, Ameland, Netherlands. 2012
Poster de conférence
hal-02805260
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Compositional changes in fruit pericarp of water-stressed tomato in greenhouseMetabolomics 2012, Jun 2012, Washington, United States. 1 p., 2012
Poster de conférence
hal-02805488
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A simple model of tomato metabolismInternational Study Group for Systems Biology, Sep 2012, Ameland, Netherlands. 2012
Poster de conférence
hal-02806898
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Metabolic network reconstruction and their topological analysisPlant Metabolic Flux Analysis : Methods and Protocols, 1090, Springer Science+Business Media, 2014, Methods in Molecular Biology, 978-1-62703-687-0. ⟨10.1007/978-1-62703-688-7_2⟩
Chapitre d'ouvrage
hal-02796948
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Metabolic Network Reconstruction and Their Topological AnalysisPlant Metabolic Flux Analysis,, 2014
Chapitre d'ouvrage
hal-02000462
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From fruit growth to ripening in plantain: a careful balance between carbohydrate synthesis and breakdown2021
Pré-publication, Document de travail
hal-03659204
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De l’optimisation de bioprocédés à l'étude du métabolisme des fruits axée sur la modélisationBiologie végétale. Université de Bordeaux, 2016
HDR
tel-02796280
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