Sophie Colombié

101
Documents

Publications

Publications

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Grapevine cell response to carbon deficiency requires transcriptome and methylome reprogramming

Margot Berger , Virginie Garcia , Nathalie Lacrampe , Bernadette Rubio , Guillaume Decros et al.
Horticulture research, 2025, 12 (1), pp.uhae277. ⟨10.1093/hr/uhae277⟩
Article dans une revue hal-04791091 v1

Interspecies predictions of growth traits from quantitative transcriptome data acquired during fruit development

Chloé Beaumont , Sylvain Prigent , Kentaro Mori , Pierre Baldet , Joana Jorly et al.
Journal of Experimental Botany, 2025, pp.eraf122. ⟨10.1093/jxb/eraf122⟩
Article dans une revue hal-05037526 v1

Ecological and metabolic implications of the nurse effect of Maihueniopsis camachoi in the Atacama Desert

Francisca Díaz , Thomas Dussarrat , Gabriela Carrasco-Puga , Sophie Colombie , Sylvain Prigent et al.
New Phytologist, 2024, 241 (3), pp.1074-1087. ⟨10.1111/nph.19415⟩
Article dans une revue hal-04514679 v1
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Modelling metabolic fluxes of tomato stems reveals that nitrogen shapes central metabolism for defence against Botrytis cinerea

Nathalie Lacrampe , Raphaël Lugan , Doriane Dumont , Philippe C. Nicot , François Lecompte et al.
Journal of Experimental Botany, 2024, 75 (13), pp.4093-4110. ⟨10.1093/jxb/erae140⟩
Article dans une revue hal-04554488 v1
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Multi-regulated GDP-l-galactose phosphorylase calls the tune in ascorbate biosynthesis

Pierre Baldet , Kentaro Mori , Sylvain Prigent , Guillaume Decros , Bertrand Beauvoit et al.
Journal of Experimental Botany, 2024, 75 (9), pp.2631-2643. ⟨10.1093/jxb/erae032/7607105⟩
Article dans une revue hal-04530669 v1
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Comparative constraint‐based modelling of fruit development across species highlights nitrogen metabolism in the growth‐defence trade‐off

Sophie Colombie , Sylvain Prigent , Cédric Cassan , Ghislaine Hilbert‐masson , Christel Renaud et al.
The Plant Journal, 2023, ⟨10.1111/tpj.16409⟩
Article dans une revue hal-04185814 v1
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Enzyme‐based kinetic modelling of ASC–GSH cycle during tomato fruit development reveals the importance of reducing power and ROS availability

Guillaume Decros , Thomas Dussarrat , Pierre Baldet , Cédric Cassan , Cécile Cabasson et al.
New Phytologist, 2023, ⟨10.1111/nph.19160⟩
Article dans une revue hal-04178513 v1
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Nitrogen-mediated metabolic patterns of susceptibility to Botrytis cinerea infection in tomato (Solanum lycopersicum) stems

Nathalie Lacrampe , Sophie Colombie , Doriane Dumont , Philippe C. Nicot , François Lecompte et al.
Planta, 2023, 257 (2), pp.41. ⟨10.1007/s00425-022-04065-0⟩
Article dans une revue hal-03951301 v1
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From fruit growth to ripening in plantain: a careful balance between carbohydrate synthesis and breakdown

Nadia Campos , Sophie Colombie , Annick Moing , Cedric Cassan , Delphine Amah et al.
Journal of Experimental Botany, 2022, 73 (14), pp.4832-4849. ⟨10.1093/jxb/erac187⟩
Article dans une revue hal-03675840 v1
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Protocole de marquage à l’azote 15N de fruits de tomate issus de plantes cultivées en condition standard

Marie-Hélène Andrieu , Isabelle Atienza , Cédric Cassan , Anne Marmagne , Daniel Just et al.
NOV'AE, 2022, 05, pp.1-11. ⟨10.17180/novae-2022-NO-art05⟩
Article dans une revue hal-03766575 v1
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The Evolution of Leaf Function during Development Is Reflected in Profound Changes in the Metabolic Composition of the Vacuole

Alice Destailleur , Théo Poucet , Cecile Cabasson , Ana Paula Alonso , Jean-Christophe Cocuron et al.
Metabolites, 2021, 11 (12), pp.848. ⟨10.3390/metabo11120848⟩
Article dans une revue hal-03505133 v1
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Regulation of sugar metabolism genes in the N-dependent susceptibility of tomato stems to Botrytis cinerea

Nathalie Lacrampe , Félicie Lopez-Lauri , Raphaël Lugan , Sophie Colombié , Jérôme Olivares et al.
Annals of Botany, 2021, 127, pp.143-154. ⟨10.1093/aob/mcaa155⟩
Article dans une revue hal-02954833 v2

Modelling predicts tomatoes can be bigger and sweeter if biophysical factors and transmembrane transports are fine‐tuned during fruit development

Jinliang Chen , Bertrand Beauvoit , Michel Génard , Sophie Colombie , Annick Moing et al.
New Phytologist, 2021, 230, pp.1489-1502. ⟨10.1111/nph.17260⟩
Article dans une revue hal-03152042 v1
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Transcriptomic and proteomic data in developing tomato fruit

Isma Belouah , Camille Bénard , Alisandra Denton , Melisande Blein-Nicolas , Thierry Balliau et al.
Data in Brief, 2020, 28, pp.1-8. ⟨10.1016/j.dib.2019.105015⟩
Article dans une revue (data paper) hal-02539392 v1
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Model-assisted comparison of sugar accumulation patterns in ten fleshy fruits highlights differences between herbaceous and woody species

Coffi Belmys Cakpo , Gilles Vercambre , Valentina Baldazzi , Léa Roch , Zhanwu Dai et al.
Annals of Botany, 2020, 126 (3), pp.455-470. ⟨10.1093/aob/mcaa082⟩
Article dans une revue hal-02749663 v1
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Biomass composition explains fruit relative growth rate and discriminates climacteric from non-climacteric species

Léa Roch , Sylvain Prigent , Holger Klose , Coffi-Belmys Cakpo , Bertrand Beauvoit et al.
Journal of Experimental Botany, 2020, 71 (19), pp.5823-5836. ⟨10.1093/jxb/eraa302⟩
Article dans une revue hal-02904041 v1

Modeling Protein Destiny in Developing Fruit

Isma Belouah , Christine Nazaret , Pierre Pétriacq , Sylvain Prigent , Camille Bénard et al.
Plant Physiology, 2019, 180 (3), pp.1709-1724. ⟨10.1104/pp.19.00086⟩
Article dans une revue hal-02327302 v1
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Peptide filtering differently affects the performances of XIC-based quantification methods

Isma Belouah , Melisande Blein-Nicolas , Thierry Balliau , Yves Gibon , Michel Zivy et al.
Journal of Proteomics, 2019, 193, pp.131-141. ⟨10.1016/j.jprot.2018.10.003⟩
Article dans une revue hal-02327322 v1
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Get the Balance Right: ROS Homeostasis and Redox Signalling in Fruit

Guillaume Decros , Pierre Baldet , Bertrand Beauvoit , Rebecca Stevens , Amélie Flandin et al.
Frontiers in Plant Science, 2019, 10, pp.1-16. ⟨10.3389/fpls.2019.01091⟩
Article dans une revue (article de synthèse) hal-02619141 v1
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Regulation of Pyridine Nucleotide Metabolism During Tomato Fruit Development Through Transcript and Protein Profiling.

Guillaume Decros , Bertrand Beauvoit , Sophie Colombie , Cecile Cabasson , Stéphane Bernillon et al.
Frontiers in Plant Science, 2019, 10, pp.1201. ⟨10.3389/fpls.2019.01201⟩
Article dans une revue hal-02620533 v1

Putting primary metabolism into perspective to obtain better fruits

Bertrand Beauvoit , Isma Belouah , Nadia Bertin , Coffi Belmys Cakpo , Sophie Colombie et al.
Annals of Botany, In press, 122 (1), pp.1-21. ⟨10.1093/aob/mcy057⟩
Article dans une revue hal-02539159 v1
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Constraint-based modeling highlights cell energy, redox status and α-ketoglutarate availability as metabolic drivers for anthocyanin accumulation in grape cells under nitrogen limitation

Eric Soubeyrand , Sophie Colombié , Bertrand Beauvoit , Zhanwu Dai , Stéphanie Cluzet et al.
Frontiers in Plant Science, 2018, 9, pp.1-14. ⟨10.3389/fpls.2018.00421⟩
Article dans une revue hal-02533089 v1

Fluxomics links cellular functional analyses to whole-plant phenotyping.

Christophe Salon , Jean-Christophe Avice , Sophie Colombie , Martine Dieuaide Noubhani , Karine Gallardo-Guerrero et al.
Journal of Experimental Botany, 2017, 68 (9), pp.2083-2098. ⟨10.1093/jxb/erx126⟩
Article dans une revue hal-01605024 v1
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Respiration climacteric in tomato fruits elucidated by constraint-based modelling.

Sophie Colombié , Bertrand Beauvoit , Christine Nazaret , Camille Bénard , Gilles Vercambre et al.
New Phytologist, 2016, 213 (4), pp.1726-1739. ⟨10.1111/nph.14301⟩
Article dans une revue hal-01445653 v1
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Metabolomic profiling in tomato reveals diel compositional changes in fruit affected by source-sink relationships.

Camille Bénard , Stéphane Bernillon , Benoit Biais , Sonia Osorio , Mickael M. Maucourt et al.
Journal of Experimental Botany, 2015, 66 (11), pp.3391-404. ⟨10.1093/jxb/erv151⟩
Article dans une revue hal-02641303 v1
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Modelling central metabolic fluxes by constraint-based optimization reveals metabolic reprogramming of developing Solanum lycopersicum (tomato) fruit.

Sophie Colombié , Christine Nazaret , Camille Bénard , Benoît Biais , Virginie Mengin et al.
The Plant Journal, 2015, 81 (1), pp.24-39. ⟨10.1111/tpj.12685⟩
Article dans une revue hal-01445680 v1
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Model-Assisted Analysis of Sugar Metabolism throughout Tomato Fruit Development Reveals Enzyme and Carrier Properties in Relation to Vacuole Expansion.

Bertrand Beauvoit , Sophie Colombié , Antoine Monier , Marie-Hélène Andrieu , Benoit Biais et al.
The Plant cell, 2014, 26 (8), pp.3224-3242. ⟨10.1105/tpc.114.127761⟩
Article dans une revue hal-01058814 v1

Remarkable reproducibility of enzyme activity profiles in tomato fruits grown under contrasting environments provides a roadmap for studies of fruit metabolism.

Benoit Biais , Camille Bénard , Bertrand Beauvoit , Sophie S. Colombie , Duyên D. Prodhomme et al.
Plant Physiology, 2014, 164, pp.1204-1221. ⟨10.1104/pp.113.231241⟩
Article dans une revue hal-02639362 v1
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Comparison between elementary flux modes analysis and 13C-metabolic fluxes measured in bacterial and plant cells

Marie M. Beurton-Aimar , Bertrand Beauvoit , Antoine Monier , Francois Vallee , Martine Dieuaide-Noubhani et al.
BMC Systems Biology, 2011, 5, pp.95. ⟨10.1186/1752-0509-5-95⟩
Article dans une revue hal-00629222 v1

Interest of on-line monitoring electrical conductivity during wine fermentation

Sophie S. Colombie , Eric Latrille , Jean-Marie J.-M. Sablayrolles
European Food Research and Technology, 2008, 226 (6), pp.1553-1557. ⟨10.1007/s00217-007-0649-1⟩
Article dans une revue istex hal-02657621 v1

Modeling of heat transfer in tanks during wine-making fermentation

Sophie S. Colombie , Sophie Malherbe , Jean-Marie J.-M. Sablayrolles
Food Control, 2007, 18 (8), pp.953-960. ⟨10.1016/j.foodcont.2006.05.016⟩
Article dans une revue istex hal-02666308 v1

Online estimation of assimilable nitrogen by electrical conductivity measurement during alcoholic fermentation in enological conditions

Sophie S. Colombie , Eric Latrille , Jean-Marie J.-M. Sablayrolles
Journal of Bioscience and Bioengineering, 2007, 103 (3), pp.229-235. ⟨10.1263/jbb.103.229⟩
Article dans une revue istex hal-02662582 v1

Modeling alcoholic fermentation in enological conditions: Feasibility and interest

Sophie S. Colombie , Sophie Malherbe , Jean-Marie J.-M. Sablayrolles
American Journal of Enology and Viticulture, 2005, 56 (3), pp.238-245
Article dans une revue hal-02681151 v1

Nicotinic acid controls lactate production by K1-LDH: a Saccharomyces cerevisiae strain expressing a bacterial LDH gene

Sophie S. Colombie , Jean-Marie J.-M. Sablayrolles
Journal of Industrial Microbiology and Biotechnology, 2004, 31 (5), pp.209-215. ⟨10.1007/s10295-004-0138-5⟩
Article dans une revue istex hal-02678767 v1

Control of lactate production by Saccharomyces cerevisiae expressing a bacterial LDH gene

Sophie S. Colombie , Sylvie S. Dequin , Jean-Marie Sablayrolles
Enzyme and Microbial Technology, 2003, 33 (1), pp.38-46. ⟨10.1016/S0141-0229(03)00082-6⟩
Article dans une revue istex hal-02673211 v1

Water activity control: A way to improve the efficiency of continuous lipase esterification

Sophie S. Colombie , R.J. Tweddell , J.S. Condoret , A. Marty
Biotechnology and Bioengineering, 1998, 60 (3), pp.362-367
Article dans une revue hal-02690200 v1

Comparative constraint-based modelling of fruit development across species highlights nitrogen metabolism in the growth- defence trade-off

Beaumont Chloé , Cassan Cédric , Sylvain Prigent , Hilbert-Masson Ghislaine , Renaud Christel et al.
JOBIM 2024 - Journées Ouvertes en Biologie, Informatique et Mathématiques, Jun 2024, Toulouse, France
Communication dans un congrès hal-04677435 v1

Metabolic fluxes estimated by constraint-based modelling highlight specific response of susceptible tomato (Solanum lycopersicum) stems infected by Botrytis cinerea under gradual nitrogen nutrition

Nathalie Lacrampe , Raphaël Lugan , Doriane Dumont , Philippe C. Nicot , François Lecompte et al.
15. Journées scientifiques du réseau francophone de métabolomique et fluxomique (RFMF), Réseau francophone de métabolomique et fluxomique, May 2023, Perpignan, France
Communication dans un congrès hal-04185066 v1
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Increased metabolic fluxes in tomato stems infected by Botrytis cinerea

Nathalie Lacrampe , Raphaël Lugan , Philippe C. Nicot , François Lecompte , Sophie S. Colombie
18. International Botrytis Symposium & 17. International Sclerotinia Workshop, Unité de pathologie végétale, Avignon, INRAE; Unité de recherche Plantes et systèmes de culture horticoles, INRAE; Unité Biologie gestion des risques en agriculture, INRAE; Avignon université, Jun 2022, Avignon, France
Communication dans un congrès hal-03695796 v1

High expression of sucrose synthase and fructokinase genes accompanies the nitrogen-dependent resistance of tomato stems to Botrytis cinerea

Nathalie Lacrampe , Raphaël Lugan , Sophie Colombie , Jérôme Olivares , Philippe C. Nicot et al.
Workshop on sugar allocation in plants, IJPB (Institut Jean Pierre Bourgin) - INRAE Versailles; EBI (Ecologie et Biologie des Interactions, CNRS/Université de Poitiers); Team SEVE (Laboratory CNRS-University, Transport de sucres et réponses des plantes aux contraintes abiotiques) - University of Poitiers., Oct 2021, Versailles, France
Communication dans un congrès hal-03681107 v1

An integrated fruit model toolkit: combining fruit biophysical processes with central carbon metabolism

J.L. Chen , Bertrand Beauvoit , Sophie Colombie , Léa Roch , Coffi Belmys Cakpo et al.
Symposium on Advanced Technologies and Management for Innovative Greenhouses: GreenSys2019, Jun 2019, Angers, France. pp.401-410, ⟨10.17660/ActaHortic.2020.1296.52⟩
Communication dans un congrès hal-03125090 v1

Peptide filtering differently affects the performances of XIC-based quantifcation methods

Melisande Blein-Nicolas , Isma Belouah , Thierry Balliau , Yves Gibon , Michel Zivy et al.
Journées Protéome Vert, Apr 2018, Paris, France
Communication dans un congrès hal-03879922 v1

HSM a reduced model of Central Carbon Metabolism: a dynamical approach

Bertrand Beauvoit , Sophie Colombie , Razanne Issa , Jean-Pierre Mazat , Christine Nazaret et al.
advances in Systems and Synthetic Biology, Mar 2017, Lyon, France
Communication dans un congrès hal-01709748 v1

Human-Scale Metabolic Network of Central Carbon Metabolism: application to serine metabolism from glutamine in Cancer Cells

Bertrand Beauvoit , Sophie Colombie , Razanne Issa , Jean-Pierre Mazat , Christine Nazaret et al.
advances in Systems and Synthetic Biology, Mar 2016, Evry, France
Communication dans un congrès hal-01709760 v1

Integrative and predictive biology outside the plant: linking computational tools to fleshy fruit systems

Cecile Cabasson , Sophie Colombie , Bertrand Beauvoit , Christine Nazaret , Camille Benard et al.
Colloque Biologie synthétique et systémique, BioSynSys, Jun 2016, Bordeaux, France
Communication dans un congrès hal-02739719 v1

Flux balance modelling in developing tomato fruit: the respiration climacteric as an emergent property

Sophie S. Colombie , Bertrand Beauvoit , Christine Nazaret , Camille Bénard , Cécile Cabasson et al.
10. journées scientifiques du Réseau Francophone de Métabolomique et Fluxomique RFMF 2016, Réseau Francophone de Métabolomique et Fluxomique (RFMF). FRA., May 2016, Montpellier, France
Communication dans un congrès hal-02740471 v1

Cellular and subcellular metabolomics reveal changes during tomato leaf development

Clémence de Jaham , Benjamin Thiombiano , Camille Bénard , A.P. Alonso , J.C. Cocuron et al.
9. Journées scientifiques du RFMF, Réseau Francophone de Métabolomique et Fluxomique (RFMF). FRA., Jun 2015, Lille, France
Communication dans un congrès hal-02740382 v1

Using metabolomic approaches and modelling of central metabolic to study fleshy fruit quality

Sophie S. Colombie , Bertrand Beauvoit , Dominique D. Rolin , Stéphane Bernillon , Camille Bénard et al.
1. International Symposium on Metabolomics in Mexico, Jun 2015, Guadalajara, Mexico. 2 p
Communication dans un congrès hal-02800371 v1

Reconstruction du réseau métabolique de la tomate

Florence Maurier , Clément Frainay , Fabien Jourdan , Sophie S. Colombie
9. Journées scientifiques du RFMF, Réseau Francophone de Métabolomique et Fluxomique (RFMF). FRA., Jun 2015, Lille, France
Communication dans un congrès hal-02742882 v1

La métabolomique : un outil de la génomique fonctionnelle au service de la biologie des systèmes

Dominique D. Rolin , Bertrand Beauvoit , Stéphane Bernillon , Camille Bénard , Patricia Ballias et al.
8e Congrès Jeunes Chercheurs de la SFBV, Société Française de Biologie Végétale (SFBV). FRA., Jun 2014, Tours, France. 1 p
Communication dans un congrès hal-02801036 v1

Using developmental and diurnal compositional changes of tomato to study metabolism

Camille Bénard , Stéphane Bernillon , Benoit Biais , Sonia Osorio-Algar , Mickael M. Maucourt et al.
8. Journées Scientifiques du Réseau Français de Métabolomique et Fluxomique RFMF, May 2014, Lyon, France. 1 p
Communication dans un congrès hal-02793195 v1

Modelling fluxes and metabolic network analysis of developing tomato fruits

Sophie S. Colombie , Bertrand Beauvoit , Christine Nazaret , Martine Dieuaide Noubhani , Jean-Pierre Mazat et al.
Bordeaux Computational Biology and Bioinformatics, Nov 2014, Bordeaux, France
Communication dans un congrès hal-02796388 v1

Systematic study of a metabolic network

Bertrand P Beauvoit , Sophie Colombié , Jean-Pierre Mazat , Christine Nazaret , Sabine Pérès
advances in Systems and Synthetic Biology, Mar 2014, Evry, France. 173 p
Communication dans un congrès hal-01108859 v1

Using Topological Analysis to Study Metabolism of Heterotrophic Plant Cell Network

Marie Beurton-Aimar , Vu Ngoc Tung Nguyen , Sophie S. Colombie
BioNetVisA workshop (join with ECCB conference,, Oct 2014, Strasbourg, France
Communication dans un congrès hal-02000486 v1
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MetaboHUB and RFMF : two tools at the service of metabolomics and fluxomics in France

Dominique Rolin , Floriant Bellvert , Justine Bertrand-Michel , Cécile Canlet , Richard Cole et al.
MERLION Metabolomics Workshop Singapore 2014, Nov 2014, Singapour, Singapore
Communication dans un congrès hal-02798242 v1

The tomato fruit development with a constraint-based model

Sophie S. Colombie , Christine Nazaret , Bertrand Beauvoit , Marion Solé , Martine Dieuaide Noubhani et al.
Metabolic Pathway Analysis 2013, Sep 2013, Oxford, United Kingdom
Communication dans un congrès hal-02804536 v1

MetaboHUB: une infrastructure nationale au service de la métabolomique

Dominique D. Rolin , Alice A. Agasse , Justine Bertrand-Michel , R. R. Cole , B. B. Colsch et al.
Séance thématique "La métabolomique : son application en recherche pharmaceutique et diagnostique", Académie Nationale de Pharmacie. FRA., Feb 2013, Paris, France
Communication dans un congrès hal-01002248 v1

MetaboHUB: a national infrastructure dedicated to metabolomics and fluxomics

Dominique D. Rolin , Alice A. Agasse , Justine Bertrand-Michel , R. R. Cole , B. B. Colsch et al.
7. Journées scientifiques du Réseau Français de Métabolomique et de Fluxomique (RFMF), Jun 2013, Amiens, France
Communication dans un congrès hal-01002241 v1

MetaboHUB: a french infrastructure dedicated to metabolomics and fluxomics

Dominique D. Rolin , Alice A. Agasse , Justine Bertrand-Michel , R. R. Cole , Sophie S. Colombie et al.
Metabolomics 2013 - 9. Annual conference of the Metabolomics Society, Jul 2013, Glasgow, United Kingdom
Communication dans un congrès hal-01002247 v1
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Implication of the vacuolar AtPAP26 in the sugars metabolism in Arabidopsis thaliana roots

Antoine Monier , Sarah Monllor , Marie-Hélène Andrieu , Sophie S. Colombie , Frédéric Delmas et al.
5. Journées scientifiques du Réseau Français de Métabolomique et Fluxomique, Labo/service de l'auteur, Ville service., May 2011, Paris, France
Communication dans un congrès hal-02749345 v1

Elementary flux mode analysis of the central metabolism of plant cells

François Vallée , Sophie S. Colombie , Bertrand Beauvoit , Nicolas Parisey , Katia Pianelli et al.
7. International workshop on Computational Systems Biology, Jun 2010, Luxembourg, Luxembourg
Communication dans un congrès hal-02752087 v1

Elementary mode analysis of the central metabolism of plant cells

Sophie S. Colombie , Bertrand Beauvoit , Nicolas Parisey , Katia Pianelli , François Vallée et al.
4. Journées scientifiques du Réseau Français de Métabolomique et Fluxomique, May 2010, Marseille, France
Communication dans un congrès hal-02752805 v1

Identification of functional hubs through metabolic networks

M. Beurton-Aimar , N. Parisey , Francois F. Vallée , Sophie S. Colombie
12. International conference on the synthesis and simulation of lifing systems, Aug 2010, Odense, Denmark
Communication dans un congrès hal-02754488 v1
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TIM/WIM: A Set of Tools to Interface Modelling in Biology.

Francois Vallee , M. Beurton-Aimar , N. Parisey , Florent Collot , Sophie Colombié
European Conference on Object-Oriented Programming, Jul 2009, Genova, Italy
Communication dans un congrès hal-00629019 v1

Mise en place d'une approche de fluxomique dans le fruit de tomate

Raphael Henri , Katia Pianelli , Marie-Hélène Andrieu , Bertrand Beauvoit , Sophie S. Colombie et al.
3. Journées, Feb 2008, Bordeaux, France
Communication dans un congrès hal-02757883 v1

TIM, une interface de saisie pour les données du métabolisme

Nicolas Parisey , Florent Collot , Raphael Henri , Bertrand Beauvoit , Martine Dieuaide Noubhani et al.
3. Journées scientifiques RFMF, Feb 2008, Bordeaux, France
Communication dans un congrès hal-02752505 v1

Quantification de flux métaboliques dans le fruit de tomate

Raphael Henri , Marie-Hélène Andrieu , Sophie S. Colombie , Philippe Raymond , Dominique D. Rolin et al.
2. Journées, Dec 2006, Saint Sauves d'Auvergne, France
Communication dans un congrès hal-02757225 v1
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Large scale plant protein turnover measurement

Willy Vincent Bienvenut , Marie-Hélène Andrieu , Olivier Langella , Thierry Balliau , Sophie Colombie et al.
Annual ASMS conference, Jun 2024, Anaheim (CA), United States
Poster de conférence hal-04590280 v1

Metabolic characterization and flux modeling of the green microalga Coelastrella sp. in response to uranium-induced stress

Mathilde Spiesser , Nahikari Prevost , Camille Beaulier , Fabienne Devime , Galeone Adrien et al.
16èmes journées scientifiques du Réseau Francophone de Métabolomique et Fluxomique, Jun 2024, Saint-Malo, France
Poster de conférence hal-04926997 v1

Detailed characterization of the responses and adaptation of a green microalga to heavy meta-induced stress

Nahikari Prevost , Cédric Cassan , Millena Barros Santos , Camille Beaulier , Stéphane Ravanel et al.
15èmes journées scientifiques du Réseau Francophone de Métabolomique et Fluxomique, May 2023, Perpignan, France
Poster de conférence hal-04926963 v1
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Using metabolomics and predictive metabolomic to study the physiology of an old rustic oilseed plant.

Malo Le Boulch , Millena C. Barros Santos , Susana Silvestre , Dominik Grosskinsky , Anaïs da Costa et al.
Metabolomics 2023, Jun 2023, Niagara falls, Canada
Poster de conférence hal-04396004 v1

Nitrogen-mediated metabolic patterns of susceptibility to Botrytis cinerea infection in tomato (Solanum lycopersicum) stems

Nathalie Lacrampe , Sophie Colombie , Doriane Dumont , Philippe C. Nicot , François Lecompte et al.
15. Journées scientifiques du réseau francophone de métabolomique et fluxomique (RFMF), May 2023, Perpignan, France
Poster de conférence hal-04185467 v1
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Primary metabolism investigation of fleshy fruit species using 1H-NMR profiling

Léa Roch , Coffi Belmys Cakpo , Catherine Deborde , Mickael Maucourt , Thierry Berton et al.
EUROMAR - European Magnetic Resonance Meeting, Jul 2018, Nantes, France. 2018
Poster de conférence hal-02737961 v1
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Comparative study of primary metabolite patterns in diverse fleshy fruit species

Léa Roch , C B Cakpo , Thierry Berton , Stéphane Bernillon , Stéphanie Arrivault et al.
MetaboMeeting, Dec 2017, Birmingham (UK), United Kingdom
Poster de conférence hal-04955742 v1

Multiscale Fruit Modeling: integrating biophysical fruit growth with biochemical metabolisms in 10 fruits

Zhanwu Dai , Bertrand Beauvoit , Sophie Colombie , Michel Génard , Gilles Vercambre et al.
2. Annual Crops in silico Symposium and Workshop, Jun 2017, Oxford, United Kingdom. 2017
Poster de conférence hal-02735987 v1

The timing of shifts in the transcriptome and proteome in relation to metabolic state during tomato fruit development

Isma Belouah , Thierry Balliau , Camille Benard , Bertrand Beauvoit , Sophie Colombie et al.
Metabolomics 2016. 12. Annual Conference of the Metabolomics Society, Jun 2016, Dublin, Ireland. , 2016
Poster de conférence hal-01603579 v1
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How to optimize metabolites concentrations and fluxes in a metabolic pathway? Backgrounds and Basics

Christine Nazaret , Sophie Colombié , Bertrand Beauvoit , Martine Dieuaide-Noubhani , Jean-Pierre Mazat et al.
International Study Group for Systems Biology meeting (ISGSB 2016) , Oct 2016, Jena, Germany.
Poster de conférence hal-01445608 v1

Characterization of a plant cell suspension culture of Vitis vinifera: biomass composition assessment before C13-metabolic flux analysis

Angela Machado Vieira , Stéphanie Cluzet , Catherine Deborde , Ghislaine Hilbert , Annick Moing et al.
10. journées scientifiques du Réseau Francophone de Métabolomique et Fluxomique RFMF 2016, May 2016, Montpellier, France. 2016
Poster de conférence hal-02741756 v1

Assessment of metabolome compartmentation changes during tomato leaf development using nonaqueous fractionation

Clémence de Jaham , Benjamin Thiombiano , Camille Benard , A. P. Alonso , J. C. Cocuron et al.
12. Solanaceae Conference SOL 2015, Oct 2015, Bordeaux, France. 2015, SOL 2015 - Book of abstracts
Poster de conférence hal-01603745 v1

Modelling metabolic fluxes during tomato fruit development

Sophie Colombie , Bertrand Beauvoit , Christine Nazaret , Camille Benard , Martine Dieuaide Noubhani et al.
12. Solanaceae Conference SOL 2015, Oct 2015, Bordeaux, France. 2015, SOL 2015
Poster de conférence hal-01601445 v1

Combining MS and proton NMR metabolomic profiling during tomato fruit development to study environment effect on metabolism

Léa Roch , Stéphane Bernillon , Mickael Maucourt , Catherine Deborde , Camille Benard et al.
12. Solanaceae Conference SOL 2015, Oct 2015, Bordeaux, France. 2015, SOL 2015 - Book of abstracts
Poster de conférence hal-01606414 v1

Combining MS and NMR metabolomic profiling during tomato fruit development to study environment effect on metabolism

Léa Roch , Stéphane Bernillon , Mickael M. Maucourt , Catherine Deborde , Camille Bénard et al.
9. Journées scientifiques du RFMF, Jun 2015, Lille, France. 2015
Poster de conférence hal-02739251 v1

Hub Reactions in Storage of Selected Compounds in Heterotrophic Plant Cell Network

Vu Ngoctung Nguyen , Sophie S. Colombie , Marie Beurton-Aimar
Metabolic Pathway Analysis 2015, Jun 2015, Braga, Portugal. , 1 p., 2015
Poster de conférence hal-02793442 v1

Primary metabolism intermediates of two tomato leaf tissues in contrasted light intensity conditions

Stéphane Bernillon , Stéphanie Arrivault , Manuela Guenther , Regina Feil , Patricia Ballias et al.
9. Journées scientifiques du RFMF, Jun 2015, Lille, France. 2015
Poster de conférence hal-02740588 v1

Reconstruction du réseau métabolique de la tomate

Florence Maurier , Clément Frainay , Fabien Jourdan , Sophie S. Colombie
9. Journées scientifiques du RFMF, Jun 2015, Lille, France. 2015
Poster de conférence hal-02742705 v1

Combining metabolite and enzymatic profiling during tomato fruit development

Mickael M. Maucourt , Camille Bénard , Benoit Biais , Patricia Ballias , Catherine Deborde et al.
8. Journées Scientifiques du Réseau Français de Métabolomique et Fluxomique RFMF, May 2014, Lyon, France. 1 p., 2014
Poster de conférence hal-02793996 v1

Flux balance analysis highlights cell energy and redox status as metabolic drivers for anthocyanin accumulation in grapevine GT3 cells under nitrogen starvation

Eric Soubeyrand , Sophie Colombie , Zhanwu Dai , Stéphanie Cluzet , Ghislaine Hilbert et al.
Macrowine 2014, Sep 2014, Stellenbosch, South Africa. 2014
Poster de conférence hal-02739299 v1

Reconstruction du réseau métabolique de la tomate

Florence Maurier , Fabien Jourdan , Sophie S. Colombie
8. Journées Scientifiques du Réseau Français de Métabolomique et Fluxomique RFMF, May 2014, Lyon, France. 1 p., 2014
Poster de conférence hal-02799581 v1

Flux Balance Analysis metabolic modelling highlights cell energy and redox status as a metabolic driver for anthocyanin accumulation in grapevine GT3 cells under nitrogen starvation

E. Soubeyrand , Sophie S. Colombie , Zhanwu Z. Dai , S. Cluzet , Ghislaine Hilbert et al.
ICP 2014 - XXVIIth International Conference on Polyphenols, Sep 2014, Nagoya, Japan. 2014
Poster de conférence hal-02792547 v1

Towards a system biology approach of the effect of different levels of nitrogen supply on anthocyanin accumulation in grapevine cell suspensions

Eric Soubeyrand , Sophie S. Colombie , Isabelle Merlin , Ghislaine Hilbert , Bertrand Beauvoit et al.
Plant Biology 2013, Jul 2013, Rhode Island, United States. 2013
Poster de conférence hal-02804615 v1

Kinetic modelling of the metabolism and compartmentation of sugars during tomato fruit development

Bertrand Beauvoit , Sophie S. Colombie , Christine Nazaret , Marie-Hélène Andrieu , Martine Dieuaide Noubhani et al.
Metabolic Pathway Analysis 2013, Sep 2013, Oxford, United Kingdom. 2013
Poster de conférence hal-02809066 v1

Minimal cut sets and its application to study metabolic pathway structures

N.T.V. Nguyen , Marie Beurton-Aymar , Sophie S. Colombie
Thematic Research School on the Advances in Systems and Synthetic Biology - Modelling Complex Biological Systems in the Context of Genomics, Mar 2013, La Colle-sur-Loup, France. 2013
Poster de conférence hal-02805827 v1

Heterotrophic plant cell network analysis: comparison between EFMs and MCSs

V.N.T. Nguyen , Marie Beurton-Aymar , Sophie S. Colombie
Metabolic Pathway Analysis 2013, Sep 2013, Oxford, United Kingdom. , 2013
Poster de conférence hal-02804631 v1

A systems biology approach for the effect of nitrogen supply on anthocyanin accumulation in grapevine cell suspensions

Eric Soubeyrand , Sophie S. Colombie , Isabelle Merlin , Ghislaine Hilbert , Bertrand Beauvoit et al.
7. Journées scientifiques du Réseau Français de Métabolomique et Fluxomique, Jun 2013, Amiens, France. 2013
Poster de conférence hal-02810027 v1

Analysis of metabolic networks using minimal cut set computting

Marie Beurton-Aimar , N.T. Nguyen-Vu , Sophie S. Colombie
International Study Group for Systems Biology, Sep 2012, Ameland, Netherlands. 2012
Poster de conférence hal-02805260 v1

Compositional changes in fruit pericarp of water-stressed tomato in greenhouse

Annick Moing , Benoit Biais , Mickael M. Maucourt , Camille Benard , Patricia Ballias et al.
Metabolomics 2012, Jun 2012, Washington, United States. 1 p., 2012
Poster de conférence hal-02805488 v1

A simple model of tomato metabolism

Bertrand Beauvoit , Benoit Biais , Sophie S. Colombie , Martine Dieuaide , Yves Y. Gibon et al.
International Study Group for Systems Biology, Sep 2012, Ameland, Netherlands. 2012
Poster de conférence hal-02806898 v1

Metabolic network reconstruction and their topological analysis

Marie Beurton-Aymar , Tung Vu-Ngoc Nguyen , Sophie S. Colombie
Plant Metabolic Flux Analysis : Methods and Protocols, 1090, Springer Science+Business Media, 2014, Methods in Molecular Biology, 978-1-62703-687-0. ⟨10.1007/978-1-62703-688-7_2⟩
Chapitre d'ouvrage hal-02796948 v1

Metabolic Network Reconstruction and Their Topological Analysis

Marie Beurton-Aimar , Vu Ngoc Tung Nguyen , Sophie Colombie
Plant Metabolic Flux Analysis,, 2014
Chapitre d'ouvrage hal-02000462 v1