Stéphane CHAILLOU

62
Documents

Présentation

Publications

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Publications

Microbiome metabolic modeling as a tool for innovation in fermented foods

Elham Karimi , Julien Tap , Marie-Christine Champomier-Vergès , Stéphane Chaillou

Current Opinion in Food Science, 2026, 67, pp.101368. ⟨10.1016/j.cofs.2025.101368⟩

Article dans une revue hal-05530180v1
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Exploring viral diversity in fermented vegetables through viral metagenomics

Julia Cantuti Gendre , Claire Le Marrec , Stéphane Chaillou , Lysiane Omhover-Fougy , Sophie Landaud et al.

Food Microbiology, 2025, 128, pp.104733. ⟨10.1016/j.fm.2025.104733⟩

Article dans une revue hal-04915669v1
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Integration of metataxonomic data sets into microbial association networks highlights shared bacterial community dynamics in fermented vegetables

Romane Junker , Florence Valence , Michel-Yves Mistou , Stéphane Chaillou , Helene Chiapello

Microbiology Spectrum, 2024, 12 (6), pp.e00312-24. ⟨10.1128/spectrum.00312-24⟩

Article dans une revue hal-04581000v1
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Holistic integration of omics data reveals the drivers that shape the ecology of microbial meat spoilage scenarios

Simon Poirier , Gwendoline Coeuret , Marie-Christine Champomier-Vergès , Marie-Hélène Desmonts , Dalal Werner et al.

Frontiers in Microbiology, 2023, 14, ⟨10.3389/fmicb.2023.1286661⟩

Article dans une revue hal-04282392v1

Metagenetic characterization of bacterial communities associated with ready-to-eat leafy vegetables and study of temperature effect on their composition during storage

Evanthia Manthou , Gwendoline Coeuret , Stephane Chaillou , George-John Nychas

Food Research International, 2022, 158, pp.111563. ⟨10.1016/j.foodres.2022.111563⟩

Article dans une revue hal-04106534v1
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Discrimination of spoiled beef and salmon stored under different atmospheres by an optoelectronic nose. Comparison with GC-MS measurements

Pauline Claus , Thomas Cattenoz , Sophie Landaud , Stéphane Chaillou , Anne-Claire Peron et al.

Future Foods, 2022, 5, pp.100106. ⟨10.1016/j.fufo.2021.100106⟩

Article dans une revue hal-03708769v1
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Combination of High-Pressure Treatment at 500 MPa and Biopreservation with a Lactococcus lactis Strain for Lowering the Bacterial Growth during Storage of Diced Cooked Ham with Reduced Nitrite Salt

Stéphane Chaillou , Mihanta Ramaroson , Gwendoline Coeuret , Albert Rossero , Valérie Anthoine et al.

Microorganisms, 2022, 10 (2), pp.1-14. ⟨10.3390/microorganisms10020456⟩

Article dans une revue hal-03798971v1
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Evolution of fungal community associated with ready-to-eat pineapple during storage under different temperature conditions

Evanthia Manthou , Gwendoline Coeuret , Stephane Chaillou , George-John Nychas

Food Microbiology, 2021, 97, pp.103736. ⟨10.1016/j.fm.2021.103736⟩

Article dans une revue hal-03376485v1
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Application of a path-modelling approach for deciphering causality relationships between microbiota, volatile organic compounds and off-odour profiles during meat spoilage

Ngoc-Du Martin Luong , Jeanne-Marie Membré , Louis Coroller , Monique Zagorec , Simon Poirier et al.

International Journal of Food Microbiology, 2021, 348, pp.109208. ⟨10.1016/j.ijfoodmicro.2021.109208⟩

Article dans une revue hal-03210645v1
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Heme Uptake in Lactobacillus sakei Evidenced by a New Energy Coupling Factor (ECF)-Like Transport System

Emilie Verplaetse , Gwenaëlle André-Leroux , Philippe Duhutrel , Gwendoline Coeuret , Stéphane Chaillou et al.

Applied and Environmental Microbiology, 2020, 86 (18), pp.1-41. ⟨10.1128/AEM.02847-19⟩

Article dans une revue hal-02939244v1

Nucleotide sequence and analysis of pRC12 and pRC18, two theta-replicating plasmids harbored by Lactobacillus curvatus CRL 705

Lucrecia Terán , Sergio A. Cuozzo , María C. Aristimuño Ficoseco , Silvina Fadda , Stephane Chaillou et al.

PLoS ONE, 2020, 15 (4), ⟨10.1371/journal.pone.0230857⟩

Article dans une revue hal-02921909v1
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Large-scale multivariate dataset on the characterization of microbiota diversity, microbial growth dynamics, metabolic spoilage volatilome and sensorial profiles of two industrially produced meat products subjected to changes in lactate concentration and packaging atmosphere

Simon Poirier , Ngoc-Du Martin Luong , Valérie Anthoine , Sandrine Guillou , Jeanne-Marie Membré et al.

Data in Brief, 2020, 30, pp.1-8. ⟨10.1016/j.dib.2020.105453⟩

Article dans une revue (data paper) hal-02914971v1

Large microbiota survey reveals how the microbial ecology of cooked ham is shaped by different processing steps

Marine Zagdoun , Gwendoline Coeuret , Méry N'Dione , Marie-Christine Champomier-Verges , Stephane Chaillou

Food Microbiology, 2020, 91, ⟨10.1016/j.fm.2020.103547⟩

Article dans une revue hal-02921899v1
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Utilisation des microbiotes comme modèles

Monique Zagorec , Marie Champomier-Vergès , Stéphane Chaillou

Viandes et Produits Carnés, 2020

Article dans une revue hal-02960423v1
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Biopréservation et hautes pressions : effet sur les communautés microbiennes

Monique Zagorec , Marie Champomier-Vergès , Sandrine Guillou , Stéphane Chaillou

Viandes et Produits Carnés, 2020, pp.1-5

Article dans une revue hal-02960426v1
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Viral metagenomic analysis of the cheese surface: A comparative study of rapid procedures for extracting viral particles

Eric Dugat-Bony , Julien Lossouarn , Marianne de Paepe , Anne-Sophie Sarthou , Yasmina Fedala et al.

Food Microbiology, 2020, 85 (103278), ⟨10.1016/j.fm.2019.103278⟩

Article dans une revue hal-02623156v1

Biopréservation et hautes pressions: des outils pour la maîtrise des dangers microbiologiques dans les aliments.

Hélène Simonin , Stephane André , Stephane Chaillou , Marie-Christine Champomier-Verges , Carole Feurer et al.

Industries Alimentaires et Agricoles, 2019, 61, pp.34-38

Article dans une revue hal-02618848v1
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Draft genome sequences of nine strains of brochothrix thermosphacta, carnobacterium divergens, lactobacillus algidus, lactobacillus fuchuensis, lactococcus piscium, leuconostoc gelidum subsp. gasicomitatum, pseudomonas lundensis, and weissella viridescens, a collection of psychrotrophic species involved in meat and seafood spoilage

Simon Poirier , Gwendoline Coeuret , Marie-Christine Champomier-Verges , Stephane Chaillou

Microbiology Resource Announcements, 2018, 6 (24), pp.1-3. ⟨10.1128/genomeA.00479-18⟩

Article dans une revue hal-02618139v1
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Complete and Draft Genome Sequences of Nine<em> Lactobacillus</em> <em>sakei</em> Strains Selected from the Three Known Phylogenetic Lineages and Their Main Clonal Complexes

Valentin Loux , Gwendoline Coeuret , Monique Zagorec , Marie-Christine Champomier-Verges , Stephane Chaillou

Genome Announcements, 2018, 6 (16), 3 p. ⟨10.1128/genomeA.00082-18⟩

Article dans une revue hal-02619093v1
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Deciphering intra-species bacterial diversity of meat and seafood spoilage microbiota using gyrB amplicon sequencing: A comparative analysis with 16S rDNA V3-V4 amplicon sequencing

Simon Poirier , Olivier Rué , Raphaelle Peguilhan , Gwendoline Coeuret , Monique Zagorec et al.

PLoS ONE, 2018, 13 (9), ⟨10.1371/journal.pone.0204629⟩

Article dans une revue hal-02621350v1
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Detection of an amplification bias associated to Leuconostocaceae family with a universal primer routinely used for monitoring microbial community structures within food products

Simon Poirier , Olivier Rué , Gwendoline Coeuret , Marie-Christine Champomier-Verges , Valentin Loux et al.

BMC Research Notes, 2018, 11 (1), pp.1-5. ⟨10.1186/s13104-018-3908-2⟩

Article dans une revue hal-02048857v1
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Phylogenomic Analysis of Lactobacillus curvatus Reveals Two Lineages Distinguished by Genes for Fermenting Plan-Derived Carbohydrates

Lucrecia C. Terán , Gwendoline Coeuret , Raul Raya , Monique Zagorec , Marie-Christine Champomier-Verges et al.

Genome Biology and Evolution, 2018, 10 (6), pp.1516 - 1525. ⟨10.1093/gbe/evy106⟩

Article dans une revue hal-02621739v1
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Draft Genome sequence of <em>Lactobacillus curvatus</em> FLEC03, a meat-borne isolate from beef carpaccio packaged in a modified atmosphere

Lucrecia C. Terán , Gwendoline Coeuret , Raul Raya , Marie-Christine Champomier-Verges , Stephane Chaillou

Genome Announcements, 2017, 5 (26), ⟨10.1128/genomeA.00584-17⟩

Article dans une revue hal-02617680v1
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Draft genome sequence of <em>Serratia proteamaculans</em> MFPA44A14-05, a model organism for the study of meat and seafood spoilage

Lysiane Fougy , Gwendoline Coeuret , Marie-Christine Champomier-Verges , Stephane Chaillou

Genome Announcements, 2017, 5 (23), ⟨10.1128/genomeA.00491-17⟩

Article dans une revue hal-02622529v1

Reducing salt in raw pork sausages increases spoilage and correlates with reduced bacterial diversity

Lysiane Fougy , Marie-Hélène Desmonts , Gwendoline Coeuret , Christine Fassel , Erwann Hamon et al.

Applied and Environmental Microbiology, 2016, 82 (13), pp.3928-3939. ⟨10.1128/AEM.00323-16⟩

Article dans une revue hal-02636148v1
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Perspectives in Mathematical Modelling for Microbial Ecology

Matthew J. Wade , Jérôme Harmand , Boumediene Benyahia , Théodore Bouchez , Stephane Chaillou et al.

Ecological Modelling, 2016, 321 (64-74), pp.64-74. ⟨10.1016/j.ecolmodel.2015.11.002⟩

Article dans une revue (article de synthèse) hal-01227423v1
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La connaissance approfondie des communautés bactériennes des aliments et ses conséquences pour l’utilisation de la biopréservation

Monique M. Zagorec , Marie-Christine Champomier Verges , Stéphane Chaillou , Sabine Leroy , S. Christieans

Innovations Agronomiques, 2015, 44, pp.15-24. ⟨10.15454/1.462262826089343E12⟩

Article dans une revue hal-02641750v1

Selection of bioprotective cultures for preventing cold-smoked salmon spoilage

Françoise Leroi , Josiane Cornet , Frédérique Chevalier , Mireille Cardinal , Gwendoline Coeuret et al.

International Journal of Food Microbiology, 2015, 213, pp.79-87. ⟨10.1016/j.ijfoodmicro.2015.05.005⟩

Article dans une revue hal-01536518v1
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Phenotypic and genotypic characterization of peptidoglycan hydrolases of [i]Lactobacillus sakei[/i]

Afef Najjari , Houda Amairi , Stephane Chaillou , Diego Mora , Abdellatif Boudabous et al.

Journal of Advanced Research, 2015, 7 (1), ⟨10.1016/j.jare.2015.04.004⟩

Article dans une revue hal-01204469v1

Origin and ecological selection of core and food-specific bacterial communities associated with meat and seafood spoilage

Stephane Chaillou , Aurélie Chaulot-Talmon , Hélène Caekebeke , Mireille Cardinal , Souad Christieans et al.

The International Society of Microbiologial Ecology Journal, 2014, 9 (5), pp.1105-1118. ⟨10.1038/ismej.2014.202⟩

Article dans une revue hal-01204375v1
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A polyphasic approach to study the dynamics of microbial population of an organic wheat sourdough during its conversion to gluten-free sourdough

Emilie Lhomme , Sandra Mezaire , Maren Bonnand Ducasse , Hubert Chiron , Marie-Christine Champomier-Verges et al.

International Microbiology, 2014, 17 (1), pp.1-9. ⟨10.2436/20.1501.01.202⟩

Article dans une revue hal-01190027v1

Quantification and efficiency of Lactobacillus sakei strain mixtures used as protective cultures in ground beef

Stephane Chaillou , S Christieans , M Rivollier , Isabelle Lucquin , Marie-Christine Champomier-Verges et al.

Meat Science, 2014, 97 (3), pp.332-338. ⟨10.1016/j.meatsci.2013.08.009⟩

Article dans une revue istex hal-01053883v1
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High genetic diversity among strains of the unindustrialized lactic acid bacterium carnobacterium maltaromaticum in dairy products as revealed by multilocus sequence typing

Abdur Rahman , Catherine Cailliez-Grimal , Cyril Bontemps , Sophie Payot , Stephane Chaillou et al.

Applied and Environmental Microbiology, 2014, 80 (13), pp.3920-3929. ⟨10.1128/AEM.00681-14⟩

Article dans une revue hal-01190026v1

Catabolism of N -Acetylneuraminic Acid, a Fitness Function of the Food-Borne Lactic Acid Bacterium Lactobacillus sakei, Involves Two Newly Characterized Proteins

Jamila Anba-Mondoloni , Stephane Chaillou , Monique Zagorec , Marie-Christine M.-C. Champomier-Verges

Applied and Environmental Microbiology, 2013, 79 (6), pp.2012-2018. ⟨10.1128/AEM.03301-12⟩

Article dans une revue hal-04310418v1
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Population genetics of [i]Lactobacillus sakei[/i] reveals three lineages with distinct evolutionary histories

Stephane Chaillou , Isabelle Lucquin , Afef Najjari , Monique Zagorec , Marie-Christine Champomier-Verges

PLoS ONE, 2013, 8 (9), ⟨10.1371/journal.pone.0073253⟩

Article dans une revue hal-01189719v1

Catabolism of N-Acetylneuraminic Acid, a Fitness Function of the Food-Borne Lactic Acid Bacterium Lactobacillus sakei, Involves Two Newly Characterized Proteins

Jamila Anba-Mondoloni , Stephane Chaillou , Monique Zagorec , Marie-Christine Champomier-Verges

Applied and Environmental Microbiology, 2013, 79 (6), pp.2012-2018. ⟨10.1128/AEM.03301-12⟩

Article dans une revue hal-01003325v1
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Complete chromosome sequence of Carnobacterium maltaromaticum LMA 28.

Catherine C. Cailliez-Grimal , Stéphane Chaillou , Jamila J. Anba-Mondoloni , Valentin Loux , Muhammad Inam M. I. Afzal et al.

Genome Announcements, 2013, 1 (1), pp.1-2. ⟨10.1128/genomeA.00115-12⟩

Article dans une revue hal-00939584v1

Intraspecies diversity of Lactobacillus sakei response to oxidative stress and variability of strain performance in mixed strains challenges

Morgan Guilbaud , Monique Zagorec , Stephane Chaillou , Marie-Christine Champomier-Verges

Food Microbiology, 2012, 29 (2), pp.197 - 204. ⟨10.1016/j.fm.2011.07.011⟩

Article dans une revue istex hal-01003446v1

Fingerprint of lactic acid bacteria population in beef carpaccio is influenced by storage process and seasonal changes

Isabelle Lucquin , Monique Zagorec , Marie-Christine Champomier-Verges , Stephane Chaillou

Food Microbiology, 2012, 29 (2), pp.187 - 196. ⟨10.1016/j.fm.2011.08.001⟩

Article dans une revue istex hal-01003445v1
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Behavior of the meat-borne bacterium Lactobacillus sakei during its transit through the gastrointestinal tracts of axenic and conventional mice

Fabrizio Chiaramonte , Sebastien Blugeon , Stephane Chaillou , Philippe Langella , Monique Zagorec

Applied and Environmental Microbiology, 2009, 75 (13), pp.4498-4505. ⟨10.1128/AEM.02868-08⟩

Article dans une revue hal-01190025v1
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Intraspecies genomic diversity and natural population structure of the meat-borne lactic acid bacterium Lactobacillus sakei

Stephane Chaillou , Marie Daty , Fabienne F. Baraige , Anne Marie Dudez , Patricia Anglade et al.

Applied and Environmental Microbiology, 2009, 75 (4), pp.970-980. ⟨10.1128/AEM.01721-08⟩

Article dans une revue hal-01190024v1

Identification of Lactobacillus sakei genes induced during meat fermentation and their role in survival and growth

Eric Hüfner , Tobias Markieton , Stéphane Chaillou , Anne-Marie Crutz-Le Coq , Monique Zagorec et al.

Applied and Environmental Microbiology, 2007, 73 (8), pp.2522-2531. ⟨10.1128/AEM.02396-06⟩

Article dans une revue hal-02662930v1

Lactobacillus sakei, une bactérie atypique, vieille compagne de l’homme

Stéphane Chaillou , Marie-Christine Champomier Verges , Anne-Marie Crutz-Le Coq , Monique Zagorec

INRA Mensuel, 2006, 126, pp.24-30

Article dans une revue hal-02656226v1
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AGMIAL: implementing an annotation strategy for prokaryote genomes as a distributed system

K. Bryson , Valentin Loux , Robert R. Bossy , P. Nicolas , Stéphane Chaillou et al.

Nucleic Acids Research, 2006, 34 (12), pp.3533-3545. ⟨10.1093/nar/gkl471⟩

Article dans une revue hal-02665192v1
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Du génome de Lactobacillus sakei à la bioconservation des produits carnés

Monique Zagorec , Stephane Chaillou , Marie-Christine Champomier-Verges , Anne-Marie Le Coq

La revue française de la recherche en viandes et produits carnés, 2006, 25 (3), pp.1-3

Article dans une revue hal-01190029v1

Phenotypic and genotypic identification of lactic acid bacteria isolated from a small-scale facility producing traditional dry sausages

Salim Ammor , Cinta Rachman , Stéphane Chaillou , Hervé Prevost , Xavier Dousset et al.

Food Microbiology, 2005, 22 (5), pp.387-382. ⟨10.1016/j.fm.2004.11.005⟩

Article dans une revue istex hal-02680364v1

The complete genome sequence of the meat-borne lactic acid bacterium Lactobacillus sakei 23K

Stéphane Chaillou , Marie-Christine Champomier Verges , Monique Cornet , Anne-Marie Crutz-Le Coq , Anne-Marie Dudez et al.

Nature Biotechnology, 2005, 23 (12), pp.1527-1533. ⟨10.1038/nbt1160⟩

Article dans une revue hal-02683108v1

Sakacin P non-producing Lactobacillus sakei strains contain homologues of the sakacin P gene cluster

Trond Møretrø , Christine Naterstad , Ellen Wang , Inga Aasen , Stéphane Chaillou et al.

Research in Microbiology, 2005, 156 (9), pp.949-960. ⟨10.1016/j.resmic.2005.05.005⟩

Article dans une revue istex hal-02678806v1

Characterization and selection of Lactobacillus sakei strains isolated from traditional dry sausage for their potential use as starter cultures

Salim Ammor , Eric Dufour , Monique Zagorec , Stéphane Chaillou , Isabelle Chevalier

Food Microbiology, 2005, 22 (6), pp.529-538. ⟨10.1016/j.fm.2004.11.016⟩

Article dans une revue istex hal-02682925v1

Evidence for involvement of at least six proteins in adaptation of Lactobacillus sakei to cold temperatures and addition of NaCl

Anika Marceau , Monique Zagorec , Stéphane Chaillou , Thérèse Méra , Marie-Christine Champomier Verges

Applied and Environmental Microbiology, 2004, 70 (12), pp.7260-7268. ⟨10.1128/AEM.70.12.7260-7268.2004⟩

Article dans une revue hal-02683183v1
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Whole genome sequencing project of a dairy Propionibacterium freudenreichii subsp. shermanii genome: progress and first bioinformatic analysis

Guillaume Meurice , Daniel Jacob , Catherine Deborde , Stéphane Chaillou , Annette Rouault et al.

Le Lait, 2004, 84 (1-2), pp.15-24. ⟨10.1051/lait:2003041⟩

Article dans une revue hal-00895526v1

Discovering lactic acid bacteria by genomics

Todd Klaenhammer , Eric Altermann , Fabrizio Arigoni , Alexandre Bolotine , Fred Breidt et al.

Antonie van Leeuwenhoek, 2002, 82 (1-4), pp.29-58

Article dans une revue hal-01190023v1

Physical and genetic map of the Lactobacillus sakei 23K chromosome

Anne-Marie Dudez , Stéphane Chaillou , Lionel Hissler , Régis Stentz , Marie-Christine Champomier Verges et al.

Microbiology, 2002, 148 (2), pp.421-431

Article dans une revue hal-02677706v1
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Adaptation of Lactobacillus sakei to meat: a new regulatory mechanism of ribose utilization?

Régis Stentz , Monique Cornet , Stéphane Chaillou , Monique Zagorec

Le Lait, 2001, 81 (1-2), pp.131-138. ⟨10.1051/lait:2001117⟩

Article dans une revue hal-00895466v1

Lactobacillus sakei: recent developments and future prospects

Marie-Christine Champomier Verges , Stéphane Chaillou , M. Cornet , Monique M. Zagorec

Research in Microbiology, 2001, 152, pp.839-848

Article dans une revue hal-02669693v1

Contribution of the phosphoenolpyruvate:mannose phosphotransferase system to carbon catabolite repression in Lactobacillus pentosus

Stéphane Chaillou , Pieter Postma , Peter Pouwels

Microbiology, 2001, 147 (3), pp.671-679. ⟨10.1099/00221287-147-3-671⟩

Article dans une revue hal-03376465v1

Functional Expression in Lactobacillus plantarum of xylP Encoding the Isoprimeverose Transporter of Lactobacillus pentosus

Stéphane Chaillou , Pieter Postma , Peter Pouwels

Journal of Bacteriology, 1998, 180 (15), pp.4011-4014. ⟨10.1128/JB.180.15.4011-4014.1998⟩

Article dans une revue hal-03376469v1

Molecular Cloning and Functional Expression in Lactobacillus plantarum 80 of xylT , Encoding the d -Xylose–H + Symporter of Lactobacillus brevis

Stéphane Chaillou , Yeou-Cherng Bor , Carl Batt , Pieter Postma , Peter Pouwels

Applied and Environmental Microbiology, 1998, 64 (12), pp.4720-4728. ⟨10.1128/AEM.64.12.4720-4728.1998⟩

Article dans une revue hal-03376482v1

Cloning, Sequence Analysis, and Characterization of the Genes Involved in Isoprimeverose Metabolism in Lactobacillus pentosus

Stéphane Chaillou , B. Christien Lokman , Rob Leer , Clara Posthuma , Pieter Postma et al.

Journal of Bacteriology, 1998, 180 (9), pp.2312-2320. ⟨10.1128/JB.180.9.2312-2320.1998⟩

Article dans une revue hal-03376461v1

Regulation of expression of the Lactobacillus pentosus xylAB operon

B Lokman , M Heerikhuisen , R Leer , A van den Broek , Y Borsboom et al.

Journal of Bacteriology, 1997, 179 (17), pp.5391-5397. ⟨10.1128/jb.179.17.5391-5397.1997⟩

Article dans une revue hal-03373849v1