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Exploring viral diversity in fermented vegetables through viral metagenomics
Julia Cantuti Gendre
,
Claire Le Marrec
,
Stéphane Chaillou
,
Lysiane Omhover-Fougy
,
Sophie Landaud
et al.
Article dans une revue
hal-04915669
v1
|
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Integration of metataxonomic data sets into microbial association networks highlights shared bacterial community dynamics in fermented vegetables
Romane Junker
,
Florence Valence
,
Michel-Yves Mistou
,
Stéphane Chaillou
,
Helene Chiapello
Article dans une revue
hal-04581000
v1
|
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Holistic integration of omics data reveals the drivers that shape the ecology of microbial meat spoilage scenarios
Simon Poirier
,
Gwendoline Coeuret
,
Marie-Christine Champomier-Vergès
,
Marie-Hélène Desmonts
,
Dalal Werner
et al.
Article dans une revue
hal-04282392
v1
|
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Discrimination of spoiled beef and salmon stored under different atmospheres by an optoelectronic nose. Comparison with GC-MS measurements
Pauline Claus
,
Thomas Cattenoz
,
Sophie Landaud
,
Stéphane Chaillou
,
Anne-Claire Peron
et al.
Article dans une revue
hal-03708769
v1
|
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Metagenetic characterization of bacterial communities associated with ready-to-eat leafy vegetables and study of temperature effect on their composition during storage
Evanthia Manthou
,
Gwendoline Coeuret
,
Stephane Chaillou
,
George-John Nychas
Article dans une revue
hal-04106534
v1
|
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Combination of High-Pressure Treatment at 500 MPa and Biopreservation with a Lactococcus lactis Strain for Lowering the Bacterial Growth during Storage of Diced Cooked Ham with Reduced Nitrite Salt
Stéphane Chaillou
,
Mihanta Ramaroson
,
Gwendoline Coeuret
,
Albert Rossero
,
Valérie Anthoine
et al.
Article dans une revue
hal-03798971
v1
|
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Evolution of fungal community associated with ready-to-eat pineapple during storage under different temperature conditions
Evanthia Manthou
,
Gwendoline Coeuret
,
Stephane Chaillou
,
George-John Nychas
Article dans une revue
hal-03376485
v1
|
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Application of a path-modelling approach for deciphering causality relationships between microbiota, volatile organic compounds and off-odour profiles during meat spoilage
Ngoc-Du Martin Luong
,
Jeanne-Marie Membré
,
Louis Coroller
,
Monique Zagorec
,
Simon Poirier
et al.
Article dans une revue
hal-03210645
v1
|
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Nucleotide sequence and analysis of pRC12 and pRC18, two theta-replicating plasmids harbored by Lactobacillus curvatus CRL 705
Lucrecia Terán
,
Sergio A. Cuozzo
,
María C. Aristimuño Ficoseco
,
Silvina Fadda
,
Stephane Chaillou
et al.
Article dans une revue
hal-02921909
v1
|
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Heme Uptake in Lactobacillus sakei Evidenced by a New Energy Coupling Factor (ECF)-Like Transport System
Emilie Verplaetse
,
Gwenaëlle André-Leroux
,
Philippe Duhutrel
,
Gwendoline Coeuret
,
Stéphane Chaillou
et al.
Article dans une revue
hal-02939244
v1
|
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Large microbiota survey reveals how the microbial ecology of cooked ham is shaped by different processing steps
Marine Zagdoun
,
Gwendoline Coeuret
,
Méry N'Dione
,
Marie-Christine Champomier-Verges
,
Stephane Chaillou
Article dans une revue
hal-02921899
v1
|
|
Large-scale multivariate dataset on the characterization of microbiota diversity, microbial growth dynamics, metabolic spoilage volatilome and sensorial profiles of two industrially produced meat products subjected to changes in lactate concentration and packaging atmosphere
Simon Poirier
,
Ngoc-Du Martin Luong
,
Valérie Anthoine
,
Sandrine Guillou
,
Jeanne-Marie Membré
et al.
Article dans une revue
(data paper)
hal-02914971
v1
|
|
Utilisation des microbiotes comme modèles
Monique Zagorec
,
Marie Champomier-Vergès
,
Stéphane Chaillou
Viandes et Produits Carnés, 2020
Article dans une revue
hal-02960423
v1
|
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Biopréservation et hautes pressions : effet sur les communautés microbiennes
Monique Zagorec
,
Marie Champomier-Vergès
,
Sandrine Guillou
,
Stéphane Chaillou
Viandes et Produits Carnés, 2020, pp.1-5
Article dans une revue
hal-02960426
v1
|
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Viral metagenomic analysis of the cheese surface: A comparative study of rapid procedures for extracting viral particles
Eric Dugat-Bony
,
Julien Lossouarn
,
Marianne de Paepe
,
Anne-Sophie Sarthou
,
Yasmina Fedala
et al.
Article dans une revue
hal-02623156
v1
|
|
Biopréservation et hautes pressions: des outils pour la maîtrise des dangers microbiologiques dans les aliments.
Hélène Simonin
,
Stephane André
,
Stephane Chaillou
,
Marie-Christine Champomier-Verges
,
Carole Feurer
et al.
Industries Alimentaires et Agricoles, 2019, 61, pp.34-38
Article dans une revue
hal-02618848
v1
|
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Deciphering intra-species bacterial diversity of meat and seafood spoilage microbiota using gyrB amplicon sequencing: A comparative analysis with 16S rDNA V3-V4 amplicon sequencing
Simon Poirier
,
Olivier Rué
,
Raphaelle Peguilhan
,
Gwendoline Coeuret
,
Monique Zagorec
et al.
Article dans une revue
hal-02621350
v1
|
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Complete and Draft Genome Sequences of Nine<em> Lactobacillus</em> <em>sakei</em> Strains Selected from the Three Known Phylogenetic Lineages and Their Main Clonal Complexes
Valentin Loux
,
Gwendoline Coeuret
,
Monique Zagorec
,
Marie-Christine Champomier-Verges
,
Stephane Chaillou
Article dans une revue
hal-02619093
v1
|
|
Detection of an amplification bias associated to Leuconostocaceae family with a universal primer routinely used for monitoring microbial community structures within food products
Simon Poirier
,
Olivier Rué
,
Gwendoline Coeuret
,
Marie-Christine Champomier-Verges
,
Valentin Loux
et al.
Article dans une revue
hal-02048857
v1
|
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Phylogenomic Analysis of Lactobacillus curvatus Reveals Two Lineages Distinguished by Genes for Fermenting Plan-Derived Carbohydrates
Lucrecia C. Terán
,
Gwendoline Coeuret
,
Raul Raya
,
Monique Zagorec
,
Marie-Christine Champomier-Verges
et al.
Article dans une revue
hal-02621739
v1
|
|
Draft genome sequences of nine strains of brochothrix thermosphacta, carnobacterium divergens, lactobacillus algidus, lactobacillus fuchuensis, lactococcus piscium, leuconostoc gelidum subsp. gasicomitatum, pseudomonas lundensis, and weissella viridescens, a collection of psychrotrophic species involved in meat and seafood spoilage
Simon Poirier
,
Gwendoline Coeuret
,
Marie-Christine Champomier-Verges
,
Stephane Chaillou
Article dans une revue
hal-02618139
v1
|
|
Draft Genome sequence of <em>Lactobacillus curvatus</em> FLEC03, a meat-borne isolate from beef carpaccio packaged in a modified atmosphere
Lucrecia C. Terán
,
Gwendoline Coeuret
,
Raul Raya
,
Marie-Christine Champomier-Verges
,
Stephane Chaillou
Article dans une revue
hal-02617680
v1
|
|
Draft genome sequence of <em>Serratia proteamaculans</em> MFPA44A14-05, a model organism for the study of meat and seafood spoilage
Lysiane Fougy
,
Gwendoline Coeuret
,
Marie-Christine Champomier-Verges
,
Stephane Chaillou
Article dans une revue
hal-02622529
v1
|
|
Reducing salt in raw pork sausages increases spoilage and correlates with reduced bacterial diversity
Lysiane Fougy
,
Marie-Hélène Desmonts
,
Gwendoline Coeuret
,
Christine Fassel
,
Erwann Hamon
et al.
Article dans une revue
hal-02636148
v1
|
|
Perspectives in Mathematical Modelling for Microbial Ecology
Matthew J. Wade
,
Jérôme Harmand
,
Boumediene Benyahia
,
Théodore Bouchez
,
Stephane Chaillou
et al.
Article dans une revue
(article de synthèse)
hal-01227423
v1
|
|
La connaissance approfondie des communautés bactériennes des aliments et ses conséquences pour l’utilisation de la biopréservation
Monique M. Zagorec
,
Marie-Christine Champomier Verges
,
Stéphane Chaillou
,
Sabine Leroy
,
S. Christieans
Article dans une revue
hal-02641750
v1
|
|
Selection of bioprotective cultures for preventing cold-smoked salmon spoilage
Françoise Leroi
,
Josiane Cornet
,
Frédérique Chevalier
,
Mireille Cardinal
,
Gwendoline Coeuret
et al.
Article dans une revue
hal-01536518
v1
|
|
Phenotypic and genotypic characterization of peptidoglycan hydrolases of [i]Lactobacillus sakei[/i]
Afef Najjari
,
Houda Amairi
,
Stephane Chaillou
,
Diego Mora
,
Abdellatif Boudabous
et al.
Article dans une revue
hal-01204469
v1
|
|
Quantification and efficiency of Lactobacillus sakei strain mixtures used as protective cultures in ground beef
Stephane Chaillou
,
S Christieans
,
M Rivollier
,
Isabelle Lucquin
,
Marie-Christine Champomier-Verges
et al.
Article dans une revue
hal-01053883
v1
|
|
A polyphasic approach to study the dynamics of microbial population of an organic wheat sourdough during its conversion to gluten-free sourdough
Emilie Lhomme
,
Sandra Mezaire
,
Maren Bonnand Ducasse
,
Hubert Chiron
,
Marie-Christine Champomier-Verges
et al.
Article dans une revue
hal-01190027
v1
|
|
High genetic diversity among strains of the unindustrialized lactic acid bacterium carnobacterium maltaromaticum in dairy products as revealed by multilocus sequence typing
Abdur Rahman
,
Catherine Cailliez-Grimal
,
Cyril Bontemps
,
Sophie Payot
,
Stephane Chaillou
et al.
Article dans une revue
hal-01190026
v1
|
|
Origin and ecological selection of core and food-specific bacterial communities associated with meat and seafood spoilage
Stephane Chaillou
,
Aurélie Chaulot-Talmon
,
Hélène Caekebeke
,
Mireille Cardinal
,
Souad Christieans
et al.
Article dans une revue
hal-01204375
v1
|
|
Catabolism of N -Acetylneuraminic Acid, a Fitness Function of the Food-Borne Lactic Acid Bacterium Lactobacillus sakei, Involves Two Newly Characterized Proteins
Jamila Anba-Mondoloni
,
Stephane Chaillou
,
Monique Zagorec
,
Marie-Christine M.-C. Champomier-Verges
Article dans une revue
hal-04310418
v1
|
|
Population genetics of [i]Lactobacillus sakei[/i] reveals three lineages with distinct evolutionary histories
Stephane Chaillou
,
Isabelle Lucquin
,
Afef Najjari
,
Monique Zagorec
,
Marie-Christine Champomier-Verges
Article dans une revue
hal-01189719
v1
|
|
Catabolism of N-Acetylneuraminic Acid, a Fitness Function of the Food-Borne Lactic Acid Bacterium Lactobacillus sakei, Involves Two Newly Characterized Proteins
Jamila Anba-Mondoloni
,
Stephane Chaillou
,
Monique Zagorec
,
Marie-Christine Champomier-Verges
Article dans une revue
hal-01003325
v1
|
|
Complete chromosome sequence of Carnobacterium maltaromaticum LMA 28.
Catherine C. Cailliez-Grimal
,
Stéphane Chaillou
,
Jamila J. Anba-Mondoloni
,
Valentin Loux
,
Muhammad Inam M. I. Afzal
et al.
Article dans une revue
hal-00939584
v1
|
|
Intraspecies diversity of Lactobacillus sakei response to oxidative stress and variability of strain performance in mixed strains challenges
Morgan Guilbaud
,
Monique Zagorec
,
Stephane Chaillou
,
Marie-Christine Champomier-Verges
Article dans une revue
istex
hal-01003446
v1
|
|
Fingerprint of lactic acid bacteria population in beef carpaccio is influenced by storage process and seasonal changes
Isabelle Lucquin
,
Monique Zagorec
,
Marie-Christine Champomier-Verges
,
Stephane Chaillou
Article dans une revue
istex
hal-01003445
v1
|
|
Intraspecies genomic diversity and natural population structure of the meat-borne lactic acid bacterium Lactobacillus sakei
Stephane Chaillou
,
Marie Daty
,
Fabienne F. Baraige
,
Anne Marie Dudez
,
Patricia Anglade
et al.
Article dans une revue
hal-01190024
v1
|
|
Behavior of the meat-borne bacterium Lactobacillus sakei during its transit through the gastrointestinal tracts of axenic and conventional mice
Fabrizio Chiaramonte
,
Sebastien Blugeon
,
Stephane Chaillou
,
Philippe Langella
,
Monique Zagorec
Article dans une revue
hal-01190025
v1
|
|
Identification of Lactobacillus sakei genes induced during meat fermentation and their role in survival and growth
Eric Hüfner
,
Tobias Markieton
,
Stéphane Chaillou
,
Anne-Marie Crutz-Le Coq
,
Monique Zagorec
et al.
Article dans une revue
hal-02662930
v1
|
|
AGMIAL: implementing an annotation strategy for prokaryote genomes as a distributed system
K. Bryson
,
Valentin Loux
,
Robert R. Bossy
,
P. Nicolas
,
Stéphane Chaillou
et al.
Article dans une revue
hal-02665192
v1
|
|
Lactobacillus sakei, une bactérie atypique, vieille compagne de l’homme
Stéphane Chaillou
,
Marie-Christine Champomier Verges
,
Anne-Marie Crutz-Le Coq
,
Monique Zagorec
INRA Mensuel, 2006, 126, pp.24-30
Article dans une revue
hal-02656226
v1
|
|
Du génome de Lactobacillus sakei à la bioconservation des produits carnés
Monique Zagorec
,
Stephane Chaillou
,
Marie-Christine Champomier-Verges
,
Anne-Marie Le Coq
La revue française de la recherche en viandes et produits carnés, 2006, 25 (3), pp.1-3
Article dans une revue
hal-01190029
v1
|
|
Phenotypic and genotypic identification of lactic acid bacteria isolated from a small-scale facility producing traditional dry sausages
Salim Ammor
,
Cinta Rachman
,
Stéphane Chaillou
,
Hervé Prevost
,
Xavier Dousset
et al.
Article dans une revue
istex
hal-02680364
v1
|
|
The complete genome sequence of the meat-borne lactic acid bacterium Lactobacillus sakei 23K
Stéphane Chaillou
,
Marie-Christine Champomier Verges
,
Monique Cornet
,
Anne-Marie Crutz-Le Coq
,
Anne-Marie Dudez
et al.
Article dans une revue
hal-02683108
v1
|
|
Characterization and selection of Lactobacillus sakei strains isolated from traditional dry sausage for their potential use as starter cultures
Salim Ammor
,
Eric Dufour
,
Monique Zagorec
,
Stéphane Chaillou
,
Isabelle Chevalier
Article dans une revue
istex
hal-02682925
v1
|
|
Sakacin P non-producing Lactobacillus sakei strains contain homologues of the sakacin P gene cluster
Trond Møretrø
,
Christine Naterstad
,
Ellen Wang
,
Inga Aasen
,
Stéphane Chaillou
et al.
Article dans une revue
istex
hal-02678806
v1
|
|
Evidence for involvement of at least six proteins in adaptation of Lactobacillus sakei to cold temperatures and addition of NaCl
Anika Marceau
,
Monique Zagorec
,
Stéphane Chaillou
,
Thérèse Méra
,
Marie-Christine Champomier Verges
Article dans une revue
hal-02683183
v1
|
|
Whole genome sequencing project of a dairy Propionibacterium freudenreichii subsp. shermanii genome: progress and first bioinformatic analysis
Guillaume Meurice
,
Daniel Jacob
,
Catherine Deborde
,
Stéphane Chaillou
,
Annette Rouault
et al.
Article dans une revue
hal-00895526
v1
|
|
Discovering lactic acid bacteria by genomics
Todd Klaenhammer
,
Eric Altermann
,
Fabrizio Arigoni
,
Alexandre Bolotine
,
Fred Breidt
et al.
Antonie van Leeuwenhoek, 2002, 82 (1-4), pp.29-58
Article dans une revue
hal-01190023
v1
|
|
Physical and genetic map of the Lactobacillus sakei 23K chromosome
Anne-Marie Dudez
,
Stéphane Chaillou
,
Lionel Hissler
,
Régis Stentz
,
Marie-Christine Champomier Verges
et al.
Microbiology, 2002, 148 (2), pp.421-431
Article dans une revue
hal-02677706
v1
|
|
Adaptation of Lactobacillus sakei to meat: a new regulatory mechanism of ribose utilization?
Régis Stentz
,
Monique Cornet
,
Stéphane Chaillou
,
Monique Zagorec
Article dans une revue
hal-00895466
v1
|
|
Contribution of the phosphoenolpyruvate:mannose phosphotransferase system to carbon catabolite repression in Lactobacillus pentosus
Stéphane Chaillou
,
Pieter Postma
,
Peter Pouwels
Article dans une revue
hal-03376465
v1
|
|
Lactobacillus sakei: recent developments and future prospects
Marie-Christine Champomier Verges
,
Stéphane Chaillou
,
M. Cornet
,
Monique M. Zagorec
Research in Microbiology, 2001, 152, pp.839-848
Article dans une revue
hal-02669693
v1
|
|
Functional Expression in Lactobacillus plantarum of xylP Encoding the Isoprimeverose Transporter of Lactobacillus pentosus
Stéphane Chaillou
,
Pieter Postma
,
Peter Pouwels
Article dans une revue
hal-03376469
v1
|
|
Molecular Cloning and Functional Expression in Lactobacillus plantarum 80 of xylT , Encoding the d -Xylose–H + Symporter of Lactobacillus brevis
Stéphane Chaillou
,
Yeou-Cherng Bor
,
Carl Batt
,
Pieter Postma
,
Peter Pouwels
Article dans une revue
hal-03376482
v1
|
|
Cloning, Sequence Analysis, and Characterization of the Genes Involved in Isoprimeverose Metabolism in Lactobacillus pentosus
Stéphane Chaillou
,
B. Christien Lokman
,
Rob Leer
,
Clara Posthuma
,
Pieter Postma
et al.
Article dans une revue
hal-03376461
v1
|
|
Regulation of expression of the Lactobacillus pentosus xylAB operon
B Lokman
,
M Heerikhuisen
,
R Leer
,
A van den Broek
,
Y Borsboom
et al.
Article dans une revue
hal-03373849
v1
|