Stéphane CHAILLOU

60
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Exploring viral diversity in fermented vegetables through viral metagenomics

Julia Cantuti Gendre , Claire Le Marrec , Stéphane Chaillou , Lysiane Omhover-Fougy , Sophie Landaud et al.
Food Microbiology, 2025, 128, pp.104733. ⟨10.1016/j.fm.2025.104733⟩
Article dans une revue hal-04915669 v1
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Integration of metataxonomic data sets into microbial association networks highlights shared bacterial community dynamics in fermented vegetables

Romane Junker , Florence Valence , Michel-Yves Mistou , Stéphane Chaillou , Helene Chiapello
Microbiology Spectrum, 2024, 12 (6), pp.e00312-24. ⟨10.1128/spectrum.00312-24⟩
Article dans une revue hal-04581000 v1
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Holistic integration of omics data reveals the drivers that shape the ecology of microbial meat spoilage scenarios

Simon Poirier , Gwendoline Coeuret , Marie-Christine Champomier-Vergès , Marie-Hélène Desmonts , Dalal Werner et al.
Frontiers in Microbiology, 2023, 14, ⟨10.3389/fmicb.2023.1286661⟩
Article dans une revue hal-04282392 v1
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Discrimination of spoiled beef and salmon stored under different atmospheres by an optoelectronic nose. Comparison with GC-MS measurements

Pauline Claus , Thomas Cattenoz , Sophie Landaud , Stéphane Chaillou , Anne-Claire Peron et al.
Future Foods, 2022, 5, pp.100106. ⟨10.1016/j.fufo.2021.100106⟩
Article dans une revue hal-03708769 v1

Metagenetic characterization of bacterial communities associated with ready-to-eat leafy vegetables and study of temperature effect on their composition during storage

Evanthia Manthou , Gwendoline Coeuret , Stephane Chaillou , George-John Nychas
Food Research International, 2022, 158, pp.111563. ⟨10.1016/j.foodres.2022.111563⟩
Article dans une revue hal-04106534 v1
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Combination of High-Pressure Treatment at 500 MPa and Biopreservation with a Lactococcus lactis Strain for Lowering the Bacterial Growth during Storage of Diced Cooked Ham with Reduced Nitrite Salt

Stéphane Chaillou , Mihanta Ramaroson , Gwendoline Coeuret , Albert Rossero , Valérie Anthoine et al.
Microorganisms, 2022, 10 (2), pp.1-14. ⟨10.3390/microorganisms10020456⟩
Article dans une revue hal-03798971 v1
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Evolution of fungal community associated with ready-to-eat pineapple during storage under different temperature conditions

Evanthia Manthou , Gwendoline Coeuret , Stephane Chaillou , George-John Nychas
Food Microbiology, 2021, 97, pp.103736. ⟨10.1016/j.fm.2021.103736⟩
Article dans une revue hal-03376485 v1
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Application of a path-modelling approach for deciphering causality relationships between microbiota, volatile organic compounds and off-odour profiles during meat spoilage

Ngoc-Du Martin Luong , Jeanne-Marie Membré , Louis Coroller , Monique Zagorec , Simon Poirier et al.
International Journal of Food Microbiology, 2021, 348, pp.109208. ⟨10.1016/j.ijfoodmicro.2021.109208⟩
Article dans une revue hal-03210645 v1

Nucleotide sequence and analysis of pRC12 and pRC18, two theta-replicating plasmids harbored by Lactobacillus curvatus CRL 705

Lucrecia Terán , Sergio A. Cuozzo , María C. Aristimuño Ficoseco , Silvina Fadda , Stephane Chaillou et al.
PLoS ONE, 2020, 15 (4), ⟨10.1371/journal.pone.0230857⟩
Article dans une revue hal-02921909 v1
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Heme Uptake in Lactobacillus sakei Evidenced by a New Energy Coupling Factor (ECF)-Like Transport System

Emilie Verplaetse , Gwenaëlle André-Leroux , Philippe Duhutrel , Gwendoline Coeuret , Stéphane Chaillou et al.
Applied and Environmental Microbiology, 2020, 86 (18), pp.1-41. ⟨10.1128/AEM.02847-19⟩
Article dans une revue hal-02939244 v1

Large microbiota survey reveals how the microbial ecology of cooked ham is shaped by different processing steps

Marine Zagdoun , Gwendoline Coeuret , Méry N'Dione , Marie-Christine Champomier-Verges , Stephane Chaillou
Food Microbiology, 2020, 91, ⟨10.1016/j.fm.2020.103547⟩
Article dans une revue hal-02921899 v1
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Large-scale multivariate dataset on the characterization of microbiota diversity, microbial growth dynamics, metabolic spoilage volatilome and sensorial profiles of two industrially produced meat products subjected to changes in lactate concentration and packaging atmosphere

Simon Poirier , Ngoc-Du Martin Luong , Valérie Anthoine , Sandrine Guillou , Jeanne-Marie Membré et al.
Data in Brief, 2020, 30, pp.1-8. ⟨10.1016/j.dib.2020.105453⟩
Article dans une revue (data paper) hal-02914971 v1
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Utilisation des microbiotes comme modèles

Monique Zagorec , Marie Champomier-Vergès , Stéphane Chaillou
Viandes et Produits Carnés, 2020
Article dans une revue hal-02960423 v1
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Biopréservation et hautes pressions : effet sur les communautés microbiennes

Monique Zagorec , Marie Champomier-Vergès , Sandrine Guillou , Stéphane Chaillou
Viandes et Produits Carnés, 2020, pp.1-5
Article dans une revue hal-02960426 v1
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Viral metagenomic analysis of the cheese surface: A comparative study of rapid procedures for extracting viral particles

Eric Dugat-Bony , Julien Lossouarn , Marianne de Paepe , Anne-Sophie Sarthou , Yasmina Fedala et al.
Food Microbiology, 2020, 85 (103278), ⟨10.1016/j.fm.2019.103278⟩
Article dans une revue hal-02623156 v1

Biopréservation et hautes pressions: des outils pour la maîtrise des dangers microbiologiques dans les aliments.

Hélène Simonin , Stephane André , Stephane Chaillou , Marie-Christine Champomier-Verges , Carole Feurer et al.
Industries Alimentaires et Agricoles, 2019, 61, pp.34-38
Article dans une revue hal-02618848 v1
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Deciphering intra-species bacterial diversity of meat and seafood spoilage microbiota using gyrB amplicon sequencing: A comparative analysis with 16S rDNA V3-V4 amplicon sequencing

Simon Poirier , Olivier Rué , Raphaelle Peguilhan , Gwendoline Coeuret , Monique Zagorec et al.
PLoS ONE, 2018, 13 (9), ⟨10.1371/journal.pone.0204629⟩
Article dans une revue hal-02621350 v1
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Complete and Draft Genome Sequences of Nine<em> Lactobacillus</em> <em>sakei</em> Strains Selected from the Three Known Phylogenetic Lineages and Their Main Clonal Complexes

Valentin Loux , Gwendoline Coeuret , Monique Zagorec , Marie-Christine Champomier-Verges , Stephane Chaillou
Genome Announcements, 2018, 6 (16), 3 p. ⟨10.1128/genomeA.00082-18⟩
Article dans une revue hal-02619093 v1
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Detection of an amplification bias associated to Leuconostocaceae family with a universal primer routinely used for monitoring microbial community structures within food products

Simon Poirier , Olivier Rué , Gwendoline Coeuret , Marie-Christine Champomier-Verges , Valentin Loux et al.
BMC Research Notes, 2018, 11 (1), pp.1-5. ⟨10.1186/s13104-018-3908-2⟩
Article dans une revue hal-02048857 v1
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Phylogenomic Analysis of Lactobacillus curvatus Reveals Two Lineages Distinguished by Genes for Fermenting Plan-Derived Carbohydrates

Lucrecia C. Terán , Gwendoline Coeuret , Raul Raya , Monique Zagorec , Marie-Christine Champomier-Verges et al.
Genome Biology and Evolution, 2018, 10 (6), pp.1516 - 1525. ⟨10.1093/gbe/evy106⟩
Article dans une revue hal-02621739 v1
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Draft genome sequences of nine strains of brochothrix thermosphacta, carnobacterium divergens, lactobacillus algidus, lactobacillus fuchuensis, lactococcus piscium, leuconostoc gelidum subsp. gasicomitatum, pseudomonas lundensis, and weissella viridescens, a collection of psychrotrophic species involved in meat and seafood spoilage

Simon Poirier , Gwendoline Coeuret , Marie-Christine Champomier-Verges , Stephane Chaillou
Microbiology Resource Announcements, 2018, 6 (24), pp.1-3. ⟨10.1128/genomeA.00479-18⟩
Article dans une revue hal-02618139 v1
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Draft Genome sequence of <em>Lactobacillus curvatus</em> FLEC03, a meat-borne isolate from beef carpaccio packaged in a modified atmosphere

Lucrecia C. Terán , Gwendoline Coeuret , Raul Raya , Marie-Christine Champomier-Verges , Stephane Chaillou
Genome Announcements, 2017, 5 (26), ⟨10.1128/genomeA.00584-17⟩
Article dans une revue hal-02617680 v1
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Draft genome sequence of <em>Serratia proteamaculans</em> MFPA44A14-05, a model organism for the study of meat and seafood spoilage

Lysiane Fougy , Gwendoline Coeuret , Marie-Christine Champomier-Verges , Stephane Chaillou
Genome Announcements, 2017, 5 (23), ⟨10.1128/genomeA.00491-17⟩
Article dans une revue hal-02622529 v1

Reducing salt in raw pork sausages increases spoilage and correlates with reduced bacterial diversity

Lysiane Fougy , Marie-Hélène Desmonts , Gwendoline Coeuret , Christine Fassel , Erwann Hamon et al.
Applied and Environmental Microbiology, 2016, 82 (13), pp.3928-3939. ⟨10.1128/AEM.00323-16⟩
Article dans une revue hal-02636148 v1
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Perspectives in Mathematical Modelling for Microbial Ecology

Matthew J. Wade , Jérôme Harmand , Boumediene Benyahia , Théodore Bouchez , Stephane Chaillou et al.
Ecological Modelling, 2016, 321 (64-74), pp.64-74. ⟨10.1016/j.ecolmodel.2015.11.002⟩
Article dans une revue (article de synthèse) hal-01227423 v1
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La connaissance approfondie des communautés bactériennes des aliments et ses conséquences pour l’utilisation de la biopréservation

Monique M. Zagorec , Marie-Christine Champomier Verges , Stéphane Chaillou , Sabine Leroy , S. Christieans
Innovations Agronomiques, 2015, 44, pp.15-24. ⟨10.15454/1.462262826089343E12⟩
Article dans une revue hal-02641750 v1

Selection of bioprotective cultures for preventing cold-smoked salmon spoilage

Françoise Leroi , Josiane Cornet , Frédérique Chevalier , Mireille Cardinal , Gwendoline Coeuret et al.
International Journal of Food Microbiology, 2015, 213, pp.79-87. ⟨10.1016/j.ijfoodmicro.2015.05.005⟩
Article dans une revue hal-01536518 v1
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Phenotypic and genotypic characterization of peptidoglycan hydrolases of [i]Lactobacillus sakei[/i]

Afef Najjari , Houda Amairi , Stephane Chaillou , Diego Mora , Abdellatif Boudabous et al.
Journal of Advanced Research, 2015, 7 (1), ⟨10.1016/j.jare.2015.04.004⟩
Article dans une revue hal-01204469 v1

Quantification and efficiency of Lactobacillus sakei strain mixtures used as protective cultures in ground beef

Stephane Chaillou , S Christieans , M Rivollier , Isabelle Lucquin , Marie-Christine Champomier-Verges et al.
Meat Science, 2014, 97 (3), pp.332-338. ⟨10.1016/j.meatsci.2013.08.009⟩
Article dans une revue hal-01053883 v1
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A polyphasic approach to study the dynamics of microbial population of an organic wheat sourdough during its conversion to gluten-free sourdough

Emilie Lhomme , Sandra Mezaire , Maren Bonnand Ducasse , Hubert Chiron , Marie-Christine Champomier-Verges et al.
International Microbiology, 2014, 17 (1), pp.1-9. ⟨10.2436/20.1501.01.202⟩
Article dans une revue hal-01190027 v1
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High genetic diversity among strains of the unindustrialized lactic acid bacterium carnobacterium maltaromaticum in dairy products as revealed by multilocus sequence typing

Abdur Rahman , Catherine Cailliez-Grimal , Cyril Bontemps , Sophie Payot , Stephane Chaillou et al.
Applied and Environmental Microbiology, 2014, 80 (13), pp.3920-3929. ⟨10.1128/AEM.00681-14⟩
Article dans une revue hal-01190026 v1

Origin and ecological selection of core and food-specific bacterial communities associated with meat and seafood spoilage

Stephane Chaillou , Aurélie Chaulot-Talmon , Hélène Caekebeke , Mireille Cardinal , Souad Christieans et al.
The International Society of Microbiologial Ecology Journal, 2014, 9 (5), pp.1105-1118. ⟨10.1038/ismej.2014.202⟩
Article dans une revue hal-01204375 v1

Catabolism of N -Acetylneuraminic Acid, a Fitness Function of the Food-Borne Lactic Acid Bacterium Lactobacillus sakei, Involves Two Newly Characterized Proteins

Jamila Anba-Mondoloni , Stephane Chaillou , Monique Zagorec , Marie-Christine M.-C. Champomier-Verges
Applied and Environmental Microbiology, 2013, 79 (6), pp.2012-2018. ⟨10.1128/AEM.03301-12⟩
Article dans une revue hal-04310418 v1
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Population genetics of [i]Lactobacillus sakei[/i] reveals three lineages with distinct evolutionary histories

Stephane Chaillou , Isabelle Lucquin , Afef Najjari , Monique Zagorec , Marie-Christine Champomier-Verges
PLoS ONE, 2013, 8 (9), ⟨10.1371/journal.pone.0073253⟩
Article dans une revue hal-01189719 v1

Catabolism of N-Acetylneuraminic Acid, a Fitness Function of the Food-Borne Lactic Acid Bacterium Lactobacillus sakei, Involves Two Newly Characterized Proteins

Jamila Anba-Mondoloni , Stephane Chaillou , Monique Zagorec , Marie-Christine Champomier-Verges
Applied and Environmental Microbiology, 2013, 79 (6), pp.2012-2018. ⟨10.1128/AEM.03301-12⟩
Article dans une revue hal-01003325 v1
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Complete chromosome sequence of Carnobacterium maltaromaticum LMA 28.

Catherine C. Cailliez-Grimal , Stéphane Chaillou , Jamila J. Anba-Mondoloni , Valentin Loux , Muhammad Inam M. I. Afzal et al.
Genome Announcements, 2013, 1 (1), pp.1-2. ⟨10.1128/genomeA.00115-12⟩
Article dans une revue hal-00939584 v1

Intraspecies diversity of Lactobacillus sakei response to oxidative stress and variability of strain performance in mixed strains challenges

Morgan Guilbaud , Monique Zagorec , Stephane Chaillou , Marie-Christine Champomier-Verges
Food Microbiology, 2012, 29 (2), pp.197 - 204. ⟨10.1016/j.fm.2011.07.011⟩
Article dans une revue istex hal-01003446 v1

Fingerprint of lactic acid bacteria population in beef carpaccio is influenced by storage process and seasonal changes

Isabelle Lucquin , Monique Zagorec , Marie-Christine Champomier-Verges , Stephane Chaillou
Food Microbiology, 2012, 29 (2), pp.187 - 196. ⟨10.1016/j.fm.2011.08.001⟩
Article dans une revue istex hal-01003445 v1
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Intraspecies genomic diversity and natural population structure of the meat-borne lactic acid bacterium Lactobacillus sakei

Stephane Chaillou , Marie Daty , Fabienne F. Baraige , Anne Marie Dudez , Patricia Anglade et al.
Applied and Environmental Microbiology, 2009, 75 (4), pp.970-980. ⟨10.1128/AEM.01721-08⟩
Article dans une revue hal-01190024 v1
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Behavior of the meat-borne bacterium Lactobacillus sakei during its transit through the gastrointestinal tracts of axenic and conventional mice

Fabrizio Chiaramonte , Sebastien Blugeon , Stephane Chaillou , Philippe Langella , Monique Zagorec
Applied and Environmental Microbiology, 2009, 75 (13), pp.4498-4505. ⟨10.1128/AEM.02868-08⟩
Article dans une revue hal-01190025 v1

Identification of Lactobacillus sakei genes induced during meat fermentation and their role in survival and growth

Eric Hüfner , Tobias Markieton , Stéphane Chaillou , Anne-Marie Crutz-Le Coq , Monique Zagorec et al.
Applied and Environmental Microbiology, 2007, 73 (8), pp.2522-2531. ⟨10.1128/AEM.02396-06⟩
Article dans une revue hal-02662930 v1
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AGMIAL: implementing an annotation strategy for prokaryote genomes as a distributed system

K. Bryson , Valentin Loux , Robert R. Bossy , P. Nicolas , Stéphane Chaillou et al.
Nucleic Acids Research, 2006, 34 (12), pp.3533-3545. ⟨10.1093/nar/gkl471⟩
Article dans une revue hal-02665192 v1

Lactobacillus sakei, une bactérie atypique, vieille compagne de l’homme

Stéphane Chaillou , Marie-Christine Champomier Verges , Anne-Marie Crutz-Le Coq , Monique Zagorec
INRA Mensuel, 2006, 126, pp.24-30
Article dans une revue hal-02656226 v1
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Du génome de Lactobacillus sakei à la bioconservation des produits carnés

Monique Zagorec , Stephane Chaillou , Marie-Christine Champomier-Verges , Anne-Marie Le Coq
La revue française de la recherche en viandes et produits carnés, 2006, 25 (3), pp.1-3
Article dans une revue hal-01190029 v1

Phenotypic and genotypic identification of lactic acid bacteria isolated from a small-scale facility producing traditional dry sausages

Salim Ammor , Cinta Rachman , Stéphane Chaillou , Hervé Prevost , Xavier Dousset et al.
Food Microbiology, 2005, 22 (5), pp.387-382. ⟨10.1016/j.fm.2004.11.005⟩
Article dans une revue istex hal-02680364 v1

The complete genome sequence of the meat-borne lactic acid bacterium Lactobacillus sakei 23K

Stéphane Chaillou , Marie-Christine Champomier Verges , Monique Cornet , Anne-Marie Crutz-Le Coq , Anne-Marie Dudez et al.
Nature Biotechnology, 2005, 23 (12), pp.1527-1533. ⟨10.1038/nbt1160⟩
Article dans une revue hal-02683108 v1

Characterization and selection of Lactobacillus sakei strains isolated from traditional dry sausage for their potential use as starter cultures

Salim Ammor , Eric Dufour , Monique Zagorec , Stéphane Chaillou , Isabelle Chevalier
Food Microbiology, 2005, 22 (6), pp.529-538. ⟨10.1016/j.fm.2004.11.016⟩
Article dans une revue istex hal-02682925 v1

Sakacin P non-producing Lactobacillus sakei strains contain homologues of the sakacin P gene cluster

Trond Møretrø , Christine Naterstad , Ellen Wang , Inga Aasen , Stéphane Chaillou et al.
Research in Microbiology, 2005, 156 (9), pp.949-960. ⟨10.1016/j.resmic.2005.05.005⟩
Article dans une revue istex hal-02678806 v1

Evidence for involvement of at least six proteins in adaptation of Lactobacillus sakei to cold temperatures and addition of NaCl

Anika Marceau , Monique Zagorec , Stéphane Chaillou , Thérèse Méra , Marie-Christine Champomier Verges
Applied and Environmental Microbiology, 2004, 70 (12), pp.7260-7268. ⟨10.1128/AEM.70.12.7260-7268.2004⟩
Article dans une revue hal-02683183 v1
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Whole genome sequencing project of a dairy Propionibacterium freudenreichii subsp. shermanii genome: progress and first bioinformatic analysis

Guillaume Meurice , Daniel Jacob , Catherine Deborde , Stéphane Chaillou , Annette Rouault et al.
Le Lait, 2004, 84 (1-2), pp.15-24. ⟨10.1051/lait:2003041⟩
Article dans une revue hal-00895526 v1

Discovering lactic acid bacteria by genomics

Todd Klaenhammer , Eric Altermann , Fabrizio Arigoni , Alexandre Bolotine , Fred Breidt et al.
Antonie van Leeuwenhoek, 2002, 82 (1-4), pp.29-58
Article dans une revue hal-01190023 v1

Physical and genetic map of the Lactobacillus sakei 23K chromosome

Anne-Marie Dudez , Stéphane Chaillou , Lionel Hissler , Régis Stentz , Marie-Christine Champomier Verges et al.
Microbiology, 2002, 148 (2), pp.421-431
Article dans une revue hal-02677706 v1
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Adaptation of Lactobacillus sakei to meat: a new regulatory mechanism of ribose utilization?

Régis Stentz , Monique Cornet , Stéphane Chaillou , Monique Zagorec
Le Lait, 2001, 81 (1-2), pp.131-138. ⟨10.1051/lait:2001117⟩
Article dans une revue hal-00895466 v1

Contribution of the phosphoenolpyruvate:mannose phosphotransferase system to carbon catabolite repression in Lactobacillus pentosus

Stéphane Chaillou , Pieter Postma , Peter Pouwels
Microbiology, 2001, 147 (3), pp.671-679. ⟨10.1099/00221287-147-3-671⟩
Article dans une revue hal-03376465 v1

Lactobacillus sakei: recent developments and future prospects

Marie-Christine Champomier Verges , Stéphane Chaillou , M. Cornet , Monique M. Zagorec
Research in Microbiology, 2001, 152, pp.839-848
Article dans une revue hal-02669693 v1

Functional Expression in Lactobacillus plantarum of xylP Encoding the Isoprimeverose Transporter of Lactobacillus pentosus

Stéphane Chaillou , Pieter Postma , Peter Pouwels
Journal of Bacteriology, 1998, 180 (15), pp.4011-4014. ⟨10.1128/JB.180.15.4011-4014.1998⟩
Article dans une revue hal-03376469 v1

Molecular Cloning and Functional Expression in Lactobacillus plantarum 80 of xylT , Encoding the d -Xylose–H + Symporter of Lactobacillus brevis

Stéphane Chaillou , Yeou-Cherng Bor , Carl Batt , Pieter Postma , Peter Pouwels
Applied and Environmental Microbiology, 1998, 64 (12), pp.4720-4728. ⟨10.1128/AEM.64.12.4720-4728.1998⟩
Article dans une revue hal-03376482 v1

Cloning, Sequence Analysis, and Characterization of the Genes Involved in Isoprimeverose Metabolism in Lactobacillus pentosus

Stéphane Chaillou , B. Christien Lokman , Rob Leer , Clara Posthuma , Pieter Postma et al.
Journal of Bacteriology, 1998, 180 (9), pp.2312-2320. ⟨10.1128/JB.180.9.2312-2320.1998⟩
Article dans une revue hal-03376461 v1

Regulation of expression of the Lactobacillus pentosus xylAB operon

B Lokman , M Heerikhuisen , R Leer , A van den Broek , Y Borsboom et al.
Journal of Bacteriology, 1997, 179 (17), pp.5391-5397. ⟨10.1128/jb.179.17.5391-5397.1997⟩
Article dans une revue hal-03373849 v1