Stéphanie BAUD

57
Documents

Publications

Publications

Structural and physical basis for the elasticity of elastin

Camille Depenveiller , Stéphanie Baud , N. Belloy , Brigida Bochicchio , Jany Dandurand et al.
Quarterly Reviews of Biophysics, 2024, ⟨10.1017/S0033583524000040⟩
Article dans une revue hal-04549268 v1
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In Silico Structural Modeling and Analysis of Physicochemical Properties of Antitumoral QS‐13 Peptide and Its Derivatives in Water and Dimethyl Sulfoxide

Vivien Paturel , Stéphanie Baud , Christophe Schneider , Sylvie Brassart‐pasco
Peptide Science, 2024, 116 (5), pp.e24352. ⟨10.1002/pep2.24352⟩
Article dans une revue hal-04746194 v1

SGPocket: A New Graph Convolutional Neural Network for Ligand-protein Binding Site Prediction

Kevin Crampon , Cedric Bourrasset , Stephanie Baud , Luiz Angelo Steffenel
Current Medicinal Chemistry, 2024, 31, ⟨10.2174/0109298673289137240304165758⟩
Article dans une revue hal-04676299 v1
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Heterogeneous graph convolutional neural network for protein-ligand scoring

Kevin Crampon , Alexis Giorkallos , Xavier Vigouroux , Stephanie Baud , Luiz Angelo Steffenel
Exploration of Drug Science, 2023, pp.126-139. ⟨10.37349/eds.2023.00010⟩
Article dans une revue hal-04085907 v1
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La valorisation des écorces d’essences champardennaises pour la cosmétique et la pharmacie.

Pierre Darme , Jérémy Spalenka , Julien Cordonnier , Simon Remy , Sandie Escotte-Binet et al.
L'Actualité Chimique, 2023, 484-485, pp.53-61
Article dans une revue hal-04184375 v1
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Anti-Toxoplasma gondii effect of lupane-type triterpenes from the bark of black alder (Alnus glutinosa) and identification of a potential target by reverse docking

Pierre Darme , Sandie Escotte-Binet , Julien Cordonnier , Simon Remy , Jane Hubert et al.
Parasite, 2022, 29, pp.7. ⟨10.1051/parasite/2022008⟩
Article dans une revue hal-03565091 v1
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Early Alterations of Intra-Mural Elastic Lamellae Revealed by Synchrotron X-ray Micro-CT Exploration of Diabetic Aortas

Aïcha Ben Zemzem , Xiaowen Liang , Laetitia Vanalderwiert , Camille Bour , Béatrice Romier-Crouzet et al.
International Journal of Molecular Sciences, 2022, 23 (6), pp.3250. ⟨10.3390/ijms23063250⟩
Article dans une revue hal-03615968 v1
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Machine-learning methods for ligand–protein molecular docking

Kevin Crampon , Alexis Giorkallos , Myrtille Deldossi , Stéphanie Baud , Luiz Angelo Steffenel
Drug Discovery Today, 2022, ⟨10.1016/j.drudis.2021.09.007⟩
Article dans une revue hal-03352012 v2
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Multiscale modelling of the extracellular matrix

Hua Wong , Jean-Marc Crowet , Manuel Dauchez , Sylvie Ricard-Blum , Stéphanie Baud et al.
Matrix Biology Plus, 2021, 13, pp.100096. ⟨10.1016/j.mbplus.2021.100096⟩
Article dans une revue hal-03507342 v2
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AMIDE v2: High-Throughput Screening Based on AutoDock-GPU and Improved Workflow Leading to Better Performance and Reliability

Pierre Darme , Manuel Dauchez , Arnaud Renard , Laurence Voutquenne-Nazabadioko , Dominique Aubert et al.
International Journal of Molecular Sciences, 2021, 22, ⟨10.3390/ijms22147489⟩
Article dans une revue hal-03287272 v1
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AG-9, an Elastin-Derived Peptide, Increases In Vitro Oral Tongue Carcinoma Cell Invasion, through an Increase in MMP-2 Secretion and MT1-MMP Expression, in a RPSA-Dependent Manner

Clara Bretaudeau , Stéphanie Baud , Aurélie Dupont-Deshorgue , Rémi Cousin , Bertrand Brassart et al.
Biomolecules, 2021, 11 (1), pp.39. ⟨10.3390/biom11010039⟩
Article dans une revue hal-03370553 v1
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Differential MMP-14 Targeting by Lumican-Derived Peptides Unraveled by In Silico Approach

Jonathan Dauvé , Nicolas Belloy , Romain Rivet , Nicolas Etique , Pierre Nizet et al.
Cancers, 2021, 13 (19), pp.4930. ⟨10.3390/cancers13194930⟩
Article dans une revue hal-03377128 v1
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A Fully Automatic and Efficient Methodology for Peptide Activity Identification Using Their 3D Conformations

Azzam Alwan , Rémi Cogranne , Pierre Beauseroy , Edith Grall-Maës , Nicolas Belloy et al.
IEEE Access, 2021, 9, pp.92143 - 92156. ⟨10.1109/access.2021.3091939⟩
Article dans une revue hal-03311364 v1

Effects of changes in glycan composition on glycoprotein dynamics: example of N -glycans on insulin receptor

Rajas M Rao , Hua Wong , Manuel Dauchez , Stéphanie Baud
Glycobiology, 2021, ⟨10.1093/glycob/cwab049⟩
Article dans une revue hal-03542037 v1
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Transmembrane Peptides as a New Strategy to Inhibit Neuraminidase-1 Activation

Camille Albrecht , Andrey S Kuznetsov , Aline Appert-Collin , Zineb Dhaideh , Maïté Callewaert et al.
Frontiers in Cell and Developmental Biology, 2020, ⟨10.3389/fcell.2020.611121⟩
Article dans une revue hal-03357996 v1
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Angiogenesis Inhibition by a Short 13 Amino Acid Peptide Sequence of Tetrastatin, the α4(IV) NC1 Domain of Collagen IV

Alexia Vautrin-Glabik , Jérôme Devy , Camille Bour , Stéphanie Baud , Laurence Choulier et al.
Frontiers in Cell and Developmental Biology, 2020, 8, ⟨10.3389/fcell.2020.00775⟩
Article dans une revue hal-03010053 v1
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Structural Analysis of Nonapeptides Derived from Elastin

Belén Hernández , Jean‐marc Crowet , Joseph Thiery , Sergei Kruglik , N. Belloy et al.
Biophysical Journal, 2020, 118 (11), pp.2755-2768. ⟨10.1016/j.bpj.2020.04.019⟩
Article dans une revue hal-02749709 v1
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Small leucine-rich proteoglycans and matrix metalloproteinase-14

Katarzyna Pietraszek-Gremplewicz , Konstantina Karamanou , Aïchata Niang , Manuel Dauchez , N. Belloy et al.
Matrix biology : journal of the International Society for Matrix Biology, 2019, 75-76, pp.271-285
Article dans une revue hal-03370790 v1

A pipeline to translate glycosaminoglycan sequences into 3D models. Application to the exploration of glycosaminoglycan conformational space

Nikos Karamanos , Zoi Piperigkou , Achilleas Theocharis , Hideto Watanabe , Marco Franchi et al.
Glycobiology, 2019, 29 (1), pp.36-44. ⟨10.1093/glycob/cwy084⟩
Article dans une revue hal-02109760 v1

Small leucine-rich proteoglycans and matrix metalloproteinase-14: Key partners?

Katarzyna Pietraszek-Gremplewicz , Konstantina Karamanou , Aïchata Niang , Manuel Dauchez , Nicolas Belloy et al.
Matrix Biology, 2019, 75-76, pp.271-285. ⟨10.1016/j.matbio.2017.12.006⟩
Article dans une revue hal-03601176 v1
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Umbrella Visualization: a method of analysis dedicated to glycan flexibility with UnityMol.

Camille Besancon , Alexandre Guillot , Sébastien Blaise , Manuel Dauchez , Nicolas Belloy et al.
Article dans une revue hal-02190172 v1

Mesoscopic Rigid Body Modelling of the Extracellular Matrix Self-Assembly

Hua Wong , Jessica Prevoteau-Jonquet , Stéphanie Baud , Manuel Dauchez , N. Belloy
Journal of Integrative Bioinformatics, 2018, ⟨10.1515/jib-2018-0009⟩
Article dans une revue hal-01821593 v1

Conformation-dependent binding of a Tetrastatin peptide to αvβ3 integrin decreases melanoma progression through FAK/PI3K/Akt pathway inhibition

Eléonore Lambert , Eloïse Fuselier , Laurent Ramont , Bertrand Brassart , Sylvain Dukic et al.
Scientific Reports, 2018, 8 (1), ⟨10.1038/s41598-018-28003-x⟩
Article dans une revue hal-02310422 v1

Proteoglycan Chemical Diversity Drives Multifunctional Cell Regulation and Therapeutics

Nikos Karamanos , Zoi Piperigkou , Achilleas Theocharis , Hideto Watanabe , Marco Franchi et al.
Chemical Reviews, 2018, 118 (18), pp.9152-9232. ⟨10.1021/acs.chemrev.8b00354⟩
Article dans une revue hal-02386784 v1
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Impact of sialic acids on the molecular dynamic of bi-antennary and tri-antennary glycans

Alexandre Guillot , Manuel Dauchez , Nicolas Belloy , Jessica Jonquet , Laurent Duca et al.
Scientific Reports, 2016, 6 (1), ⟨10.1038/srep35666⟩
Article dans une revue hal-02347497 v1
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New Insights into Molecular Organization of Human Neuraminidase-1: Transmembrane Topology and Dimerization Ability

Pascal Maurice , Stéphanie Baud , Olga V Bocharova , Eduard V Bocharov , Andrey V. Kuznetsov et al.
Scientific Reports, 2016, 6 (1), ⟨10.1038/srep38363⟩
Article dans une revue hal-02347486 v1

Tuning self-assembly in elastin-derived peptides

Brigida Bochicchio , Antonietta Pepe , Maria Crudele , N. Belloy , Stéphanie Baud et al.
Soft Matter, 2015, 11 (17), pp.3385 - 3395. ⟨10.1039/C5SM00072F⟩
Article dans une revue hal-01692948 v1

Inverse docking method for new proteins targets identification: A parallel approach

Romain Vasseur , Stéphanie Baud , Luiz Angelo Steffenel , Xavier Vigouroux , Laurent Martiny et al.
Parallel Computing, 2015, 42, pp.48 - 59. ⟨10.1016/j.parco.2014.09.008⟩
Article dans une revue hal-01709658 v1
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Plasmin releases the anti-tumor peptide from the NC1 domain of collagen XIX

Jean-Baptiste Oudart , Sylvie Brassart-Pasco , Alexia Vautrin , Christèle Sellier , Carine Machado et al.
Oncotarget, 2015, 6 (6), pp.3656-3668. ⟨10.18632/oncotarget.2849⟩
Article dans une revue hal-03541824 v1

Molecular-level characterization of elastin-like constructs and human aortic elastin

Andrea Heinz , Christoph Schräder , Stéphanie Baud , Fred Keeley , Suzanne Mithieux et al.
Matrix Biology, 2014, 38, pp.12-21. ⟨10.1016/j.matbio.2014.07.006⟩
Article dans une revue hal-03541820 v1
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AMIDE -Automatic Molecular Inverse Docking Engine for Large-Scale Protein Targets Identification

R Vasseur , S. Baud , Luiz Angelo Steffenel , X Vigouroux , L. Martiny et al.
International Journal On Advances in Life Sciences, 2014, 6 (3-4), pp.325-337
Article dans une revue hal-02560920 v1
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Interaction between the elastin peptide VGVAPG and human elastin binding protein.

Charlotte Blanchevoye , Nicolas Floquet , Amandine Scandolera , Stéphanie Baud , Pascal Maurice et al.
Journal of Biological Chemistry, 2013, 288 (2), pp.1317-1328. ⟨10.1074/jbc.M112.419929⟩
Article dans une revue hal-01109325 v1
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Interaction between the Elastin Peptide VGVAPG and Human Elastin Binding Protein

Charlotte Blanchevoye , Nicolas Floquet , Amandine Scandolera , Stéphanie Baud , Pascal Maurice et al.
Journal of Biological Chemistry, 2013, 288 (2), pp.1317-1328. ⟨10.1074/jbc.M112.419929⟩
Article dans une revue hal-02347668 v1
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Amyloidogenesis of proteolytic fragments of human elastin

Brigida Bochicchio , Antonietta Pepe , Florian Delaunay , Marina Lorusso , Stéphanie Baud et al.
RSC Advances, 2013, vol. 3 (n° 32), pp. 13273-13285. ⟨10.1039/c3ra41893f⟩
Article dans une revue hal-01166361 v1

Elastin peptides in aging and pathological conditions

Stéphanie Baud , Laurent Duca , Brigida Bochicchio , Bertrand Brassart , N. Belloy et al.
Biomolecular concepts, 2013, 4 (1), ⟨10.1515/bmc-2011-0062⟩
Article dans une revue hal-01692943 v1

Elastin-Derived Peptides Are New Regulators of Insulin Resistance Development in Mice

Sébastien Blaise , Béatrice Romier , Charlotte Kawecki , Maxime Ghirardi , Fanja Rabenoelina et al.
Diabetes, 2013, ⟨10.2337/db13-0508⟩
Article dans une revue hal-02347628 v1

Binding of inositol stereoisomers to model amyloidogenic peptides.

Li G. , S. Rauscher , S. Baud , R. Pomès
Journal of Physical Chemistry B, 2012, 116 (3), pp.1111-1119
Article dans une revue hal-00678971 v1

Molecular mechanism of β-sheet self-organization at water-hydrophobic interfaces.

A. Nikolic , S. Baud , S. Rauscher , R. Pomès
Proteins - Structure, Function and Bioinformatics, 2011, 79 (1), pp.1-22
Article dans une revue hal-00678973 v1

Molecular Basis for the Catalysis of B-Sheet Formation by Water-Nonpolar Interfaces

Ana Nikolic , Stéphanie Baud , Sarah Rauscher , Régis Pomès
Biophysical Journal, 2010, 98 (3), pp.252a. ⟨10.1016/j.bpj.2009.12.1368⟩
Article dans une revue hal-03541827 v1

Proline and Glycine Control Protein Self-Organization into Elastomeric or Amyloid Fibrils

Sarah Rauscher , Stéphanie Baud , Ming Miao , Fred w. Keeley , Régis Pomès
Structure, 2006, 14 (11), pp.1667-1676. ⟨10.1016/j.str.2006.09.008⟩
Article dans une revue hal-03541833 v1

Atomic diffusion inside a STM junction: simulations by kinetic Monte Carlo coupled to tunneling current calculations

Stéphanie Baud , Xavier Bouju , Christophe Ramseyer , Hao Tang
Surface Science : A Journal Devoted to the Physics and Chemistry of Interfaces, 2003, 523 (3), pp.267-278. ⟨10.1016/S0039-6028(02)02439-1⟩
Article dans une revue istex hal-03541867 v1

HGScore: artificial intelligence for structure-based molecular docking scoring

Kevin Crampon , Alexis Giorkallos , Xavier Vigouroux , Stéphanie Baud , Luiz Angelo Steffenel
GGMM 2023 - Young Modellers Conference, CECAM, May 2023, Toulouse, France
Communication dans un congrès hal-04676371 v1

SGPocket: Predict protein-ligand binding site using graph convolutional neural network

Kévin Crampon , Xavier Vigouroux , Stéphanie Baud , Luiz Angelo Steffenel
CompBioMed Conference (CBMC 2023), Centre of Excellence in Computational Biomedicine (CompBioMed), Sep 2023, Munich (Allemagne), Germany
Communication dans un congrès hal-04676355 v1
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Exploring damaged elastic arteries by Synchrotron X-ray Micro-CT

Xiaowen Liang , Aïcha Ben Zemzem , Laetitia Vanalderwiert , Béatrice Romier-Crouzet , Sébastien Blaise et al.
Congrès de la Société Française de Biomécanique, 2023, Grenoble, France. pp.S30-S32, ⟨10.1080/10255842.2023.2246304⟩
Communication dans un congrès hal-04147878 v1

Scalabilité de l'entraînement d'un réseau de convolution de graphes pour l'amarrage moléculaire

Kévin Crampon , Alexis Giorkallos , Stéphanie Baud , Luiz Angelo Steffenel
Conférence d’informatique en Parallélisme, Architecture et Système (ComPAS'22), Jul 2022, Amiens, France
Communication dans un congrès hal-04676443 v1

13th EBSA congress, July 24–28, 2021, Vienna, Austria

Rajas Mallenahalli Rao , Marc Guéroult , Nicolas Belloy , Jean‐marc Crowet , Stéphane Brézillon et al.
13th EBSA congress, Jul 2021, Vienne, Austria. pp.159, ⟨10.1007/s00249-021-01558-w⟩
Communication dans un congrès hal-03541830 v1
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Improved Umbrella Visualization implemented in UnityMol gives valuable insight on sugar/protein interplay

C Besançon , H. Wong , R. Rao , M. Dauchez , N. Belloy et al.
Workshop on Molecular Graphics and Visual Analysis of Molecular Data (MolVA) (2020), May 2020, Norrköping, Sweden. ⟨10.2312/molva.20201097⟩
Communication dans un congrès hal-02749938 v1
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An efficient statistical methodology for peptide 3D structure clustering

Azzam Alwan , Rémi Cogranne , Pierre Beauseroy , Edith Grall-Maës , Laurent Debelle et al.
2018 IEEE 4th Middle East Conference on Biomedical Engineering (MECBME), Mar 2018, Tunis, Tunisia. pp.78-83, ⟨10.1109/MECBME.2018.8402410⟩
Communication dans un congrès hal-02056766 v1

New visualization of dynamical flexibility of N-Glycans: Umbrella Visualization in UnityMol.

Camille Besancon , Alexandre Guillot , Sébastien Blaise , Manuel Dauchez , Nicolas Belloy et al.
2018 IEEE International Conference on Bioinformatics and Biomedicine (BIBM), Dec 2018, Madrid, Spain. pp.291-298
Communication dans un congrès hal-02160102 v1
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A Framework for Inverse Virtual Screening Large-Scale Protein Targets Identification

Romain Vasseur , Stéphanie Baud , Luiz Angelo Steffenel , Xavier Vigouroux , Laurent Martiny et al.
6th International Conference on Bioinformatics, Biocomputational Systems and Biotechnologies (BIOTECHNO 2014), IARIA, Apr 2014, Chamonix, France
Communication dans un congrès hal-02560915 v1

Parallel strategies for an inverse docking method

Romain Vasseur , Stéphanie Baud , Luiz Angelo Steffenel , Xavier Vigouroux , Laurent Martiny et al.
the 20th European MPI Users' Group Meeting, Sep 2013, Madrid, France. ⟨10.1145/2488551.2488584⟩
Communication dans un congrès hal-01709088 v1