Access content directly

Thibault LEROY

Permanent researcher (CRCN), INRAE
61
Documents

Publications

Image document

Whole-genome screening for near-diagnostic genetic markers for four western European white oak species identification

Antoine Kremer , Adline Delcamp , Isabelle Lesur , Stefanie Wagner , Christian Rellstab
Annals of Forest Science, 2024, 81 (1), pp.21. ⟨10.1186/s13595-024-01236-9⟩
Journal articles hal-04640959v1
Image document

Low-frequency somatic mutations are heritable in tropical trees Dicorynia guianensis and Sextonia rubra

Sylvain Schmitt , Patrick Heuret , Valérie Troispoux , Mélanie Beraud , Jocelyn Cazal
Proceedings of the National Academy of Sciences of the United States of America, 2024, 121, ⟨10.1073/pnas.2313312121⟩
Journal articles hal-04481461v1
Image document

Allele surfing causes maladaptation in a Pacific salmon of conservation concern

Quentin Rougemont , Thibault Leroy , Eric Rondeau , Ben Koop , Louis Bernatchez
PLoS Genetics, 2023, 19 (9), pp.e1010918. ⟨10.1371/journal.pgen.1010918⟩
Journal articles hal-04222461v1
Image document

Drivers of genomic landscapes of differentiation across a Populus divergence gradient

Huiying Shang , Martha Rendón-Anaya , Ovidiu Paun , David Field , Jaqueline Hess
Molecular Ecology, 2023, ⟨10.1111/mec.17034⟩
Journal articles hal-04138535v1

Re-evaluating the driving force behind mutations

Thibault Leroy
eLife, 2023, 12, ⟨10.7554/eLife.89706⟩
Journal articles hal-04338150v1

Tracking population structure and phenology through time using ancient genomes from waterlogged white oak wood

Stefanie Wagner , Andaine Seguin-Orlando , Jean-Charles Leplé , Thibault Leroy , Céline Lalanne
Molecular Ecology, 2023, ⟨10.1111/mec.16859⟩
Journal articles hal-04158430v1
Image document

CAM evolution is associated with gene family expansion in an explosive bromeliad radiation

Clara Groot Crego , Jaqueline Hess , Gil Yardeni , Marylaure de la Harpe , Clara Priemer
The Plant cell, 2023, ⟨10.1101/2023.02.01.526631⟩
Journal articles hal-04338234v1

Demographic responses of oceanic island birds to local and regional ecological disruptions revealed by whole-genome sequencing

Maëva Gabrielli , Thibault Leroy , Jordi Salmona , Benoit Nabholz , Borja Milá
Molecular Ecology, 2023, ⟨10.1101/2023.09.12.555930⟩
Journal articles hal-04341797v1

Somatic mutation detection: a critical evaluation through simulations and reanalyses in oaks

Sylvain Schmitt , Thibault Leroy , Myriam Heuertz , Niklas Tysklind
Peer Community Journal, 2022, 2, pp.e68. ⟨10.24072/pcjournal.187⟩
Journal articles hal-03887919v1
Image document

Genome‐wide evolutionary response of European oaks during the Anthropocene

Dounia Saleh , Jun Chen , Jean-Charles Leplé , Thibault Leroy , Laura Truffaut
Evolution Letters, 2022, 6 (1), pp.4-20. ⟨10.1002/evl3.269⟩
Journal articles hal-03553889v1
Image document

Response to Kratochvíl and Rovatsos

Benoit Nabholz , Thibault Leroy
Current Biology - CB, 2022, 32 (1), pp.R30-R31. ⟨10.1016/j.cub.2021.11.067⟩
Journal articles hal-03521111v1
Image document

Evolution of immune genes in island birds: reduction in population sizes can explain island syndrome

Mathilde Barthe , Claire Doutrelant , Rita Covas , Martim Melo , Juan Carlos Illera
Peer Community Journal, 2022, 2, pp.e67. ⟨10.24072/pcjournal.186⟩
Journal articles hal-03886783v1
Image document

Gene expression and genetic divergence in oak species highlight adaptive genes to soil water constraints

Grégoire Le Provost , Benjamin Brachi , Isabelle Lesur , Céline Lalanne , Karine Labadie
Plant Physiology, 2022, 190 (4), pp.2466-2483. ⟨10.1093/plphys/kiac420/6692722⟩
Journal articles hal-03771214v1
Image document

Island songbirds as windows into evolution in small populations

Thibault Leroy , Marjolaine Rousselle , Marie-Ka Tilak , Aude Caizergues , Céline Scornavacca
Current Biology - CB, 2021, 31 (6), pp.1303-1310.e4. ⟨10.1016/j.cub.2020.12.040⟩
Journal articles hal-03784876v1

A bird’s white-eye view on avian sex chromosome evolution

Thibault Leroy , Yoann Anselmetti , Marie-Ka Tilak , Sèverine Bérard , Laura Csukonyi
Peer Community Journal, 2021, 1, pp.e63. ⟨10.24072/pcjournal.70⟩
Journal articles hal-04338161v1

Taxon‐specific or universal? Using target capture to study the evolutionary history of rapid radiations

Gil Yardeni , Juan Viruel , Margot Paris , Jaqueline Hess , Clara Groot Crego
Molecular Ecology Resources, 2021, 22 (3), pp.927-945. ⟨10.1111/1755-0998.13523⟩
Journal articles hal-04338158v1

Spatial and Ecological Drivers of Genetic Structure in Greek Populations of Alkanna tinctoria (Boraginaceae), a Polyploid Medicinal Herb

Muhammad Ahmad , Thibault Leroy , Nikos Krigas , Eva Temsch , Hanna Weiss-Schneeweiss
Frontiers in Plant Science, 2021, 12, ⟨10.3389/fpls.2021.706574⟩
Journal articles hal-04338167v1

Adaptive introgression as a driver of local adaptation to climate in European white oaks

Thibault Leroy , Jean-Marc Louvet , Céline Lalanne , Grégoire Le Provost , Karine Labadie
New Phytologist, 2020, 226 (4), pp.1171-1182. ⟨10.1111/nph.16095⟩
Journal articles hal-02627923v1
Image document

Évolution passée et contemporaine des chênes

Antoine Kremer , Christophe Plomion , Thibault Leroy , Hermine Alexandre , Laura Truffaut
Revue forestière française, 2020, 72 (4), pp.297-318. ⟨10.20870/revforfr.2020.5331⟩
Journal articles hal-03206333v1

Within-island diversification in a passerine bird

Maëva Gabrielli , Benoit Nabholz , Thibault Leroy , Borja Milá , Christophe Thébaud
Proceedings of the Royal Society B: Biological Sciences, 2020, 287 (1923), pp.20192999. ⟨10.1098/rspb.2019.2999⟩
Journal articles hal-02965034v1

Demographic history shaped geographical patterns of deleterious mutation load in a broadly distributed Pacific Salmon

Quentin Rougemont , Jean-Sébastien Moore , Thibault Leroy , Eric Normandeau , Eric Rondeau
PLoS Genetics, 2020, 16 (8), pp.e1008348. ⟨10.1371/journal.pgen.1008348⟩
Journal articles hal-04338188v1
Image document

Massive postglacial gene flow between European white oaks uncovered genes underlying species barriers

Thibault Leroy , Quentin Rougemont , Jean-Luc Dupouey , Catherine Bodenes , Céline Lalanne
New Phytologist, 2019, online fisrt, pp.1-15. ⟨10.1111/nph.16039⟩
Journal articles hal-02622295v1
Image document

Tracing the ancestry of modern bread wheats

Caroline Pont , Thibault Leroy , Michael Seidel , Alessandro Tondelli , Wandrille Duchemin
Nature Genetics, 2019, 51 (5), pp.905-911. ⟨10.1038/s41588-019-0393-z⟩
Journal articles hal-02154676v1
Image document

Oak genome reveals facets of long lifespan

Christophe Plomion , Jean-Marc Aury , Joelle Amselem , Thibault Leroy , Florent Murat
Nature Plants, 2018, 4 (7), pp.440-452. ⟨10.1038/s41477-018-0172-3⟩
Journal articles hal-01820559v1
Image document

Hardwood tree genomics: unlocking woody plant biology

Gerald A. Tuskan , Andrew T. Groover , Jeremy Schmutz , Stephen Paul Difazio , Alexander Myburg
Frontiers in Plant Science, 2018, 9, pp.1-9. ⟨10.3389/fpls.2018.01799⟩
Journal articles hal-02622509v1
Image document

Population structure of Venturia inaequalis, a causal agent of apple scab, in response to heterogeneous apple tree cultivation

Monika Michalecka , Sylwester Masny , Thibault Leroy , Joanna Puławska
BMC Evolutionary Biology, 2018, 18 (1), pp.1-15. ⟨10.1186/s12862-018-1122-4⟩
Journal articles hal-02624379v1
Image document

High-Throughput DNA sequencing of ancient wood

Stefanie Wagner , Frédéric Lagane , Andaine Seguin-Orlando , Mikkel Schubert , Thibault Leroy
Molecular Ecology, 2018, 27 (5), pp.1138-1154. ⟨10.1111/mec.14514⟩
Journal articles hal-01783724v1

A Tchernobyl, l'Inra étudie la résistance du chêne

Séverine Guillemet , Christophe Plomion , Thibault Leroy
Sud Ouest, 2018, 26 août 2018, pp.16
Journal articles hal-02617998v1
Image document

Extensive recent secondary contacts between four European white oak species

Thibault Leroy , Camille Roux , Laure Villate , Catherine Bodénès , Jonathan Romiguier
New Phytologist, 2017, 214 (2), pp.865-878. ⟨10.1111/nph.14413⟩
Journal articles hal-01608621v1

When virulence originates from nonagricultural hosts: evolutionary and epidemiological consequences of introgressions following secondary contacts in Venturia inaequalis

Thibault Leroy , Valérie Caffier , Jean-Marc Celton , Nicolas Anger , Charles-Eric Durel
New Phytologist, 2016, 210 (4), pp.1443-1452. ⟨10.1111/nph.13873⟩
Journal articles hal-02516628v1

Emergence of new virulent populations of apple scab from nonagricultural disease reservoirs

Christophe Lemaire , Marie de Gracia , Thibault Leroy , Monika Michalecka , Hanne Lindhard-Pedersen
New Phytologist, 2015, 209 (3), pp.1220-1229. ⟨10.1111/nph.13658⟩
Journal articles hal-01392705v1

Decoding the oak genome: public release of sequence data, assembly, annotation and publication strategies.

Christophe Plomion , Jean-Marc Aury , Joëlle Amselem , Tina Alaeitabar , Valérie Barbe
Molecular Ecology Resources, 2015, 16 (1), pp.254-265. ⟨10.1111/1755-0998.12425⟩
Journal articles hal-01579667v1

Cell wall integrity and high osmolarity glycerol pathways are required for adaptation of Alternaria brassicicola to cell wall stress caused by brassicaceous indolic phytoalexins

Aymeric Joubert , Nelly N. Bataillé , Claire C. Campion , Thomas Guillemette , Piétrick Hudhomme
Cellular Microbiology, 2011, 13 (1), pp.62-80. ⟨10.1111/j.1462-5822.2010.01520.x⟩
Journal articles hal-04331671v1

Evolution of the population structure of Venturia inaequalis, the apple scab fungus, associated with the domestication of its host

Pierre Gladieux , Xiu-Guo Zhang , Isabel Roldan-Ruiz , Valérie Caffier , Thibault Leroy
Molecular Ecology, 2010, 19 (4), pp.658-674. ⟨10.1111/j.1365-294X.2009.04498.x⟩
Journal articles hal-04331642v1

Is a Plant a Genetic Mosaic? An Insight into Plants' Individuality

Sophie Gerber , Thibault Leroy
Philosophy of Plant Biology Workshop Program http://sites.exeter.ac.uk/plantphenome/philosophy-of-plant-biology-workshop/, May 2021, Exeter, United Kingdom
Conference papers hal-03282361v1
Image document

An integrated information system dedicated to oak genomics and genetics

Joëlle Amselem , Nicolas Francillonne , Célia Michotey , Thomas Letellier , Jean-Marc Aury
PAG XXVI Plant and Animal Genome Conference, Jan 2018, San Diego, United States. pp.27 slides
Conference papers hal-01839185v1

Oak genome sequencing and evolution

Jerome J. Salse , Jean Marc Aury , Florent Murat , Sébastien Faye , Karine Labadie
Genomics and Forest Tree Genetics Conference, Institut National de Recherche Agronomique (INRA). UMR Biodiversité, Gènes et Communautés (1202)., May 2016, Arcachon, France. 134 p
Conference papers hal-02741698v1

Identification of recent secondary contacts between four morphologically distinct oak species

Thibault Leroy , Camille Roux , Catherine Bodenes-Brezard Bodénès , Jean-Marc Aury , Antoine Kremer
Genomics and Forest Tree Genetics Conference, Institut National de Recherche Agronomique (INRA). UMR Biodiversité, Gènes et Communautés (1202)., May 2016, Arcachon, France. 134 p
Conference papers hal-02743580v1

Annotation of the oak genome sequence and associated bioinformatic resources

Joelle J. Amselem , Jean Marc Aury , Nicolas Francillonne , Tina Alaeitabar , Corinne da Silva
IUFRO Genomics and Forest Tree Genetics, Institut National de Recherche Agronomique (INRA). UMR Biodiversité, Gènes et Communautés (1202)., May 2016, Arcachon, France. 134 p
Conference papers hal-02741128v1

When Resistance genes introgressed in agrosystems act as gateways for virulent populations from the wild: the apple scab case study

Christophe Lemaire , Thibault Leroy , Pierre Gladieux , Marie de Gracia , Fabien Guérin
Plant Resistance Sustainability International Conference, 2012, La Colle sur Loup, France
Conference papers hal-03284033v1

Les barrières génétiques endogènes chez les pathogènes : la virulence-Vf de Venturia inaequalis à l’épreuve des scans génomiques

Thibault Leroy , Marie de Gracia , Valérie Caffier , Nicolas Anger , Charles-Eric Durel
9èmes Rencontres de Phytopathologie, Journées Jean Chevaugeon, 2012, Aussois, France
Conference papers hal-03284037v1

Coupling evolutionary dynamics of fungal effectors and functional genomics : towards understanding mechanisms of Venturia inaequalis virulence and identifying durable resistance genes in apple

Benoît Calmes , Thibault Leroy , Adrien Biessy , Thomas Guillemette , Mélanie Sannier
28th Fungal Genetics Conference, 2011, Asilomar, United States
Conference papers hal-03284027v1

Worldwide spread and evolution of pathogenicity traits of the apple scab fungus Venturia inaequalis associated with the domestication of its host

Bruno Le Cam , Pierre Gladieux , Amandine Lê Van , Charles-Eric Durel , Thibault Leroy
Cycle de division : dans le temps et l’espace - Conférences Jacques Monod, 2010, Roscoff, France
Conference papers hal-03284024v1
Image document

Dark side of the honeymoon: reconstructing the Asian x European rose breeding history through the lens of genomics

Thibault Leroy , Elise Albert , Tatiana Thouroude , Sylvie Baudino , Jean-Claude Caissard
2024
Preprints, Working Papers, ... hal-04503438v1

Dark side of the honeymoon: reconstructing the Asian x European rose breeding history through the lens of genomics

Thibault Leroy , Elise Albert , Tatiana Thouroude , Sylvie Baudino , Jean-Claude Caissard
2023
Preprints, Working Papers, ... hal-04338225v1

Whole-genome screening for near-diagnostic genetic markers for white oak species identification in Europe

Antoine Kremer , Adline Delcamp , Isabelle Lesur , Stefanie Wagner , Rellstab Christian
2023
Preprints, Working Papers, ... hal-04338208v1

Plant mutations: slaying beautiful hypotheses by surprising evidence

Sylvain Schmitt , Patrick Heuret , Valérie Troispoux , Mélanie Beraud , Jocelyn Cazal
2023
Preprints, Working Papers, ... hal-04338228v1

The explosive radiation of the Neotropical Tillandsia subgenus Tillandsia (Bromeliaceae) has been facilitated by pervasive hybridization

Gil Yardeni , Michael Barfuss , Walter Till , Matthew Thornton , Clara Groot Crego
2023
Preprints, Working Papers, ... hal-04338213v1

Core genes driving climate adaptation in plants

Samuel Yeaman , James Whiting , Tom Booker , Clement Rougeux , Brandon Lind
2023
Preprints, Working Papers, ... hal-04338219v1
Image document

Genome-wide evolutionary response of European oaks since the Little Ice Age

Dounia Saleh , Jun Chen , Jean-Charles Leplé , Thibault Leroy , Laura Truffaut
2021
Preprints, Working Papers, ... hal-03275582v1
Image document

Adaptive introgression as a driver of local adaptation to climate in European white oaks

Thibault Leroy , Jean-Marc Louvet , Céline Lalanne , Grégoire Le Provost , Karine Labadie
2019
Preprints, Working Papers, ... hal-02788600v1
Image document

Estimations et déterminants de la diversité génétique

Thibault Leroy
Génétique des populations [q-bio.PE]. Université d'Angers, 2022
Habilitation à diriger des recherches tel-04065311v1