Thierry FORNE

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Simultaneous profiling of transcripts and genomic regions associated with nuclear bodies using the RNA-DNA High-salt Recovered Sequence (RD-HRS) method

Nathan Lecouvreur , Cosette Rebouissou , Annick Lesne , Thierry Forné

Methods in Molecular Biology, 2025, Methods in Molecular Biology, 2962, pp.141-151. ⟨10.1007/978-1-0716-4726-4_10⟩

Article dans une revue hal-04711849v1
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DLK1/DIO3 locus upregulation by a β-catenin-dependent enhancer drives cell proliferation and liver tumorigenesis

Julie Sanceau , Lucie Poupel , Camille Joubel , Isabelle Lagoutte , Stefano Caruso et al.

Molecular Therapy, 2024, ⟨10.1016/j.ymthe.2024.01.036⟩

Article dans une revue hal-04441676v1
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DeSUMOylation of chromatin-bound proteins limits the rapid transcriptional reprogramming induced by daunorubicin in acute myeloid leukemias

Mathias Boulanger , Mays Aqrouq , Denis Tempé , Chamseddine Kifagi , Marko Ristic et al.

Nucleic Acids Research, 2023, 51 (16), pp.8413-8433. ⟨10.1093/nar/gkad581⟩

Article dans une revue hal-04252815v1
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Quantitative Chromosome Conformation Capture (3C-qPCR)

Cosette Rebouissou , Séphora Sallis , Thierry Forné

Methods in Molecular Biology, 2022, Spatial Genome Organization: Methods and Protocols, 2532, pp.3-13. ⟨10.1007/978-1-0716-2497-5_1⟩

Article dans une revue hal-03500295v1
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The High-salt Recovered Sequence-sequencing (HRS-seq) method: exploring genome association with nuclear bodies

Cosette Rebouissou , Marie-Odile Baudement , Thierry Forné

Methods in Molecular Biology, 2022, Spatial Genome Organization: Methods and Protocols, 2532, pp.187-197. ⟨10.1007/978-1-0716-2497-5_9⟩

Article dans une revue hal-03500289v1
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Endogenous Retroviral Sequences Behave as Putative Enhancers Controlling Gene Expression through HP1-Regulated Long-Range Chromatin Interactions

Sébastien Calvet , Séphora Sallis , Nehmé Saksouk , Cosette Rebouissou , Catherine Teyssier et al.

Cells, 2022, 11 (15), pp.2392. ⟨10.3390/cells11152392⟩

Article dans une revue hal-03745418v1
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Contribution of 3D genome topological domains to genetic risk of cancers: a genome-wide computational study

Kim Philipp Jablonski , Leopold Carron , Julien Mozziconacci , Thierry Forné , Marc-Thorsten Hütt et al.

Human Genomics, 2022, 16 (1), pp.2. ⟨10.1186/s40246-022-00375-2⟩

Article dans une revue hal-03525806v1
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Cocaine-related DNA methylation in caudate neurons alters 3D chromatin structure of the IRXA gene cluster

Kathryn Vaillancourt , Jennie Yang , Gary Chen , Volodymyr Yerko , Jean-François Théroux et al.

Molecular Psychiatry, 2021, 26, pp.3134-3151. ⟨10.1038/s41380-020-00909-x⟩

Article dans une revue hal-02989971v1
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Hypoxia differently modulates the release of mitochondrial and nuclear DNA

Amaëlle Otandault , Jean-Daniel Abraham , Zahra Al Amir Dache , Abdelnaby Khalyfa , Isabelle Jariel-Encontre et al.

British Journal of Cancer, 2020, 122, pp.715 - 725. ⟨10.1038/s41416-019-0716-y⟩

Article dans une revue hal-02504555v2
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Exploring Mammalian Genome within Phase-Separated Nuclear Bodies: Experimental Methods and Implications for Gene Expression

Annick Lesne , Marie-Odile Baudement , Cosette Rebouissou , Thierry Forné

Genes, 2019, 10 (12), pp.1049. ⟨10.3390/genes10121049⟩

Article dans une revue hal-02422755v1
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High-salt Recovered Sequences are associated with the active chromosomal compartment and with large ribonucleoprotein complexes including nuclear bodies

Marie Baudement , Axel Cournac , Franck Court , Marie Seveno , Hugues Parrinello et al.

Genome Research, 2018, 28 (11), pp.1733 - 1746. ⟨10.1101/gr.237073.118⟩

Article dans une revue hal-01912447v1
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EHMT2 directs DNA methylation for efficient gene silencing in mouse embryos

Ghislain Auclair , Julie Borgel , Lionel Sanz , Judith Vallet , Sylvain Guibert et al.

Genome Research, 2016, 26 (2), pp.192--202. ⟨10.1101/gr.198291.115⟩

Article dans une revue hal-02187322v1
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The physics of cancer: The role of epigenetics and chromosome conformation in cancer progression

Oleg B Naimark , Aleksandr S Nikitiuk , Marie-Odile Baudement , Thierry Forné , Annick Lesne

AIP Conference Proceedings, 2016, International Conference on Physics of Cancer, 1760 (1), pp.020051. ⟨10.1063/1.4960270⟩

Article dans une revue (article de synthèse) hal-04666603v1
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Distinct polymer physics principles govern chromatin dynamics in mouse and Drosophila topological domains

Vuthy Ea , Tom Sexton , Thierry Gostan , Laurie Herviou , Marie-Odile Baudement et al.

BMC Genomics, 2015, 16, pp.607. ⟨10.1186/s12864-015-1786-8⟩

Article dans une revue hal-01212952v1
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Contribution of Topological Domains and Loop Formation to 3D Chromatin Organization

Vuthy Ea , Marie-Odile Baudement , Annick Lesne , Thierry Forné

Genes, 2015, 6 (3), pp.734-750. ⟨10.3390/genes6030734⟩

Article dans une revue hal-01264317v1
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Chromatin fiber allostery and the epigenetic code

Annick Lesne , Nicolas Foray , Guy Cathala , Thierry Forné , Hua Wong et al.

Journal of Physics: Condensed Matter, 2015, 27 (6), pp.064114. ⟨10.1088/0953-8984/27/6/064114⟩

Article dans une revue hal-01110488v1
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Finite-Size Conformational Transitions: A Unifying Concept Underlying Chromosome Dynamics

Bertrand R Caré , Pascal Carrivain , Thierry Forné , Jean-Marc Victor , Annick Lesne

Communications in Theoretical Physics, 2014, 62 (4), pp.607-616. ⟨10.1088/0253-6102/62/4/18⟩

Article dans une revue hal-02948467v1
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Myod and H19-Igf2 locus interactions are required for diaphragm formation in the mouse

M. Borensztein , Paul Monnier , Franck Court , Yoann Louault , Marie-Anne Ripoche et al.

Development (Cambridge, England), 2013, 140 (6), pp.1231--9. ⟨10.1242/dev.084665⟩

Article dans une revue hal-02191602v1

Global profiling of DNA methylation erasure in mouse primordial germ cells

Sylvain Guibert , Thierry Forné , Michaël Weber

Genome Research, 2012, 22 (4), pp.633--41. ⟨10.1101/gr.130997.111⟩

Article dans une revue hal-02193214v1
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Modulated contact frequencies at gene-rich loci support a statistical helix model for mammalian chromatin organization.

Franck Court , Julie Miro , Caroline Braem , Marie-Noëlle Lelay-Taha , Audrey Brisebarre et al.

Genome Biology, 2011, 12 (5), pp.R42. ⟨10.1186/gb-2011-12-5-r42⟩

Article dans une revue inserm-00605349v1
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Long-range chromatin interactions at the mouse Igf2/H19 locus reveal a novel paternally expressed long non-coding RNA

Franck Court , Marion Baniol , Hélène Hagège , Julie Sandrine Petit , Marie-Noëlle Lelay-Taha et al.

Nucleic Acids Research, 2011, 39 (14), pp.5893 - 5906. ⟨10.1093/nar/gkr209⟩

Article dans une revue hal-01685883v1
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Genomic matrix attachment region and chromosome conformation capture quantitative real time PCR assays identify novel putative regulatory elements at the imprinted Dlk1/Gtl2 locus

Caroline Braem , Bénédicte Recolin , Rebecca C Rancourt , Christopher Angiolini , Pauline Barthès et al.

Journal of Biological Chemistry, 2008, 283 (27), pp.18612-18620. ⟨10.1074/jbc.M801883200⟩

Article dans une revue hal-01600983v1

Quantitative analysis of chromosome conformation capture assays (3C-qPCR)

Hélène Hagège , Petra Klous , Caroline Braem , Erik Splinter , Job Dekker et al.

Nature Protocols, 2007, 2 (7), pp.1722 - 1733. ⟨10.1038/nprot.2007.243⟩

Article dans une revue hal-01685886v1

Genomic imprinting controls matrix attachment regions in the Igf2 gene.

Michael Weber , Hélène Hagège , Adele Murrell , Claude Brunel , Wolf Reik et al.

Molecular and Cellular Biology, 2003, 23, pp.8953-9. ⟨10.1128/MCB.23.24.8953-8959.2003⟩

Article dans une revue hal-01685920v1

A real-time polymerase chain reaction assay for quantification of allele ratios and correction of amplification bias.

Michael Weber , Hélène Hagège , Georges Lutfalla , Luisa Dandolo , Claude Brunel et al.

Analytical Biochemistry, 2003, 320, pp.252-8. ⟨10.1016/s0003-2697(03)00396-8⟩

Article dans une revue istex hal-01685917v1
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Disruption of Base-Paired U4-Center-Dot-U6 Small Nuclear Rnas Induced by Mammalian Heterogeneous Nuclear Ribonucleoprotein-C Protein

Thierry Forné , Ferdinand Rossi , Emmanuel Labourier , Etienne Antoine , Guy Cathala et al.

Journal of Biological Chemistry, 1995, 270 (27), pp.16476--16481. ⟨10.1074/jbc.270.27.16476⟩

Article dans une revue hal-02193512v1
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Empreinte génomique parentale : découverte et mécanismes de régulation

Thierry Forné

Épigénétique. Mécanismes moléculaires, biologie du développement et réponses à l’environnement, chapitre 4, éditions Quae, pp.67-82, 2024, Synthèses, 978-2-7592-3769-2. ⟨10.35690/978-2-7592-3770-8⟩

Chapitre d'ouvrage hal-04765382v1
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Chromatin and DNA Dynamics in Mouse Models of Liver Cancers

Julie Sanceau , Thierry Forné , Sophie Chantalat , Angélique Gougelet

Liver Carcinogenesis, 2769, Springer US, pp.167-187, 2024, Methods in Molecular Biology, ⟨10.1007/978-1-0716-3694-7_13⟩

Chapitre d'ouvrage hal-04717291v1

Epigenetic regulation of mammalian imprinted genes: from primary to functional imprints.

Michael Weber , Hélène Hagège , Nathalie Aptel , Claude Brunel , Guy Cathala et al.

Philippe Jeanteur. Progress in Molecular and Subcellular Biology, 38, Springer-Verlag, pp.207-36, 2005, Epigenetics and Chromatin

Chapitre d'ouvrage hal-01685907v1