Thomas Blein

Documents

Publications

	From environmental responses to adaptation: the roles of plant lncRNAs Soledad Traubenik , Céline Charon , Thomas Blein Plant Physiology, 2024, 195 (1), pp.232-244. ⟨10.1093/plphys/kiae034⟩ Journal articles hal-04601515v1
	The Compact Root Architecture 2 systemic pathway is required for the repression of cytokinins and miR399 accumulation in Medicago truncatula N-limited plants Luca Argirò , Carole Laffont , Corentin Moreau , Carol Moreau , Yangyang Su Journal of Experimental Botany, inPress, pp.erae281. ⟨10.1093/jxb/erae281⟩ Journal articles hal-04678694v1
	Synergistic action of the Arabidopsis spliceosome components PRP39a and SmD1b in promoting posttranscriptional transgene silencing Jérémie Bazin , Emilie Elvira-Matelot , Thomas Blein , Vincent Jauvion , Nathalie Bouteiller The Plant cell, 2023, 35 (6), pp.1917-1935. ⟨10.1093/plcell/koad091⟩ Journal articles hal-04298436v1
	Transcription factors KANADI 1, MYB DOMAIN PROTEIN 44, and PHYTOCHROME INTERACTING FACTOR 4 regulate long intergenic noncoding RNAs expressed in Arabidopsis roots Li Liu , Michel Heidecker , Thomas Depuydt , Nicolas Manosalva Perez , Martin Crespi Plant Physiology, 2023, 193 (3), pp.1933-1953. ⟨10.1093/plphys/kiad360⟩ Journal articles hal-04299815v1
	The long intergenic noncoding RNA ARES modulates root architecture in Arabidopsis Thomas Roulé , María Florencia Legascue , Andana Barrios , Nicolás Gaggion , Martin Crespi IUBMB Life, 2023, 75 (10), pp.880-892. ⟨10.1002/iub.2761⟩ Journal articles hal-04299803v1
	Variable selection in sparse GLARMA models Marina Gomtsyan , Céline Lévy-Leduc , Sarah Ouadah , Laure Sansonnet , Thomas Blein Statistics, 2022, 56 (4), pp.755-784. ⟨10.1080/02331888.2022.2090943⟩ Journal articles hal-03763853v1
	The lncRNA MARS modulates the epigenetic reprogramming of the marneral cluster in response to ABA Thomas Roulé , Aurelie Christ , Nosheen Hussain , Ying Huang , Caroline Hartmann Molecular Plant, 2022, 15 (5), pp.1-58. ⟨10.1016/j.molp.2022.02.007⟩ Journal articles hal-03698779v1
	The Arabidopsis APOLO and human UPAT sequence-unrelated long noncoding RNAs can modulate DNA and histone methylation machineries in plants Camille Fonouni-Farde , Aurélie Christ , Thomas Blein , María Florencia Legascue , Lucía Ferrero Genome Biology, 2022, 23 (1), pp.181. ⟨10.1186/s13059-022-02750-7⟩ Journal articles hal-03768549v1
	Insights into long non-coding RNA regulation of anthocyanin carrot root pigmentation Constanza Chialva , Thomas Blein , Martin Crespi , Diego Lijavetzky Scientific Reports, 2021, 11 (1), ⟨10.1038/s41598-021-83514-4⟩ Journal articles hal-03324569v1
	Regulatory long non-coding RNAs in root growth and development Thomas Roulé , Martin Crespi , Thomas Blein Biochemical Society Transactions, 2021, pp.1-18. ⟨10.1042/BST20210743⟩ Journal articles hal-03555826v1
	ChronoRoot: High-throughput phenotyping by deep segmentation networks reveals novel temporal parameters of plant root system architecture Nicolás Gaggion , Federico Ariel , Vladimir Daric , Eric Lambert , Simon Legendre GigaScience, 2021, 10 (7), pp.giab052. ⟨10.1093/gigascience/giab052⟩ Journal articles hal-03324566v1
	Full Length Transcriptome Highlights the Coordination of Plastid Transcript Processing Marine Guilcher , Arnaud Liehrmann , Chloé Seyman , Thomas Blein , Guillem Rigaill International Journal of Molecular Sciences, 2021, 22 (20), pp.1-15. ⟨10.3390/ijms222011297⟩ Journal articles hal-03343771v1
	Role of MPK4 in pathogen-associated molecular pattern-triggered alternative splicing in Arabidopsis Jérémie Bazin , Kiruthiga G Mariappan , Yunhe Jiang , Thomas Blein , Ronny Voelz PLoS Pathogens, 2020, 16 (4), pp.e1008401. ⟨10.1371/journal.ppat.1008401⟩ Journal articles hal-03015159v1
	High-quality genome sequence of white lupin provides insight into soil exploration and seed quality Barbara Hufnagel , André Marques , Alexandre Soriano , Laurence Marquès , Fanchon Divol Nature Communications, 2020, 11 (1), pp.492. ⟨10.1038/s41467-019-14197-9⟩ Journal articles hal-02460008v1
	R-Loop Mediated trans Action of the APOLO Long Noncoding RNA Federico Ariel , Leandro Lucero , Aurelie Christ , Maria Florencia Mammarella , Teddy Jegu Molecular Cell, 2020, 77 (5), pp.1055-1065. ⟨10.1016/j.molcel.2019.12.015⟩ Journal articles hal-02964078v1
	Landscape of the Noncoding Transcriptome Response of Two Arabidopsis Ecotypes to Phosphate Starvation Thomas Blein , Coline Balzergue , Thomas Roulé , Marc Gabriel , Laetitia Scalisi Plant Physiology, 2020, 183 (3), pp.1058-1072. ⟨10.1104/pp.20.00446⟩ Journal articles cea-02962421v1
	Wheat chromatin architecture is organized in genome territories and transcription factories Lorenzo Concia , Alaguraj Veluchamy , Juan Ramirez-Prado , Azahara Martin-Ramirez , Ying Huang Genome Biology, 2020, 21 (1), pp.1-20. ⟨10.1186/s13059-020-01998-1⟩ Journal articles hal-02571325v1
	The Arabidopsis lnc RNA ASCO modulates the transcriptome through interaction with splicing factors Richard Rigo , Jérémie Bazin , Natali Romero‐barrios , Michaël Moison , Leandro Lucero EMBO Reports, 2020, 21 (5), pp.1-19. ⟨10.15252/embr.201948977⟩ Journal articles hal-02991642v1
	GCN5 modulates salicylic acid homeostasis by regulating H3K14ac levels at the 5′ and 3′ ends of its target genes Soonkap Kim , Sophie Piquerez , Juan Ramirez-Prado , Emmanouil Mastorakis , Alaguraj Veluchamy Nucleic Acids Research, 2020, 48 (11), pp.5953-5966. ⟨10.1093/nar/gkaa369⟩ Journal articles hal-02889481v1
	Whole-genome landscape of Medicago truncatula symbiotic genes Yann Pecrix , S. Evan Staton , Erika Sallet , Christine Lelandais-Brière , Sandra Moreau Nature Plants, 2018, 4 (12), pp.1017-1025. ⟨10.1038/s41477-018-0286-7⟩ Journal articles hal-02383693v1
	Nuclear Speckle RNA Binding Proteins Remodel Alternative Splicing and the Non-coding Arabidopsis Transcriptome to Regulate a Cross-Talk Between Auxin and Immune Responses Jérémie Bazin , Natali Romero , Richard Rigo , Céline Charon , Thomas Blein Frontiers in Plant Science, 2018, 9, pp.1209. ⟨10.3389/fpls.2018.01209⟩ Journal articles hal-02379622v1
	Arabidopsis HEAT SHOCK TRANSCRIPTION FACTORA1b regulates multiple developmental genes under benign and stress conditions Waleed Albihlal , Irabonosi Obomighie , Thomas Blein , Ramona Persad , Igor Chernukhin Journal of Experimental Botany, 2018, 69 (11), pp.2847-2862. ⟨10.1093/jxb/ery142⟩ Journal articles hal-02379644v1
	GDP-L-fucose is required for boundary definition in plants Beatriz Goncalves , Aude Maugarny-Calès , Bernard B. Adroher , Millan Cortizo , Néro N. Borrega Journal of Experimental Botany, 2017, 68 (21-22), pp.5801-5811. ⟨10.1093/jxb/erx402⟩ Journal articles hal-02379649v1
	A SWI/SNF Chromatin Remodelling Protein Controls Cytokinin Production through the Regulation of Chromatin Architecture Teddy Jegu , Séverine Domenichini , Thomas Blein , Federico Ariel , Aurélie Christ PLoS ONE, 2015, 10 (10), pp.e0138276. ⟨10.1371/journal.pone.0138276⟩ Journal articles hal-02379647v1
	A miR169 isoform regulates specific NF-YA targets and root architecture in Arabidopsis Céline Sorin , Marie Declerck , Aurélie Christ , Thomas Blein , Linnan Ma New Phytologist, 2014, 202 (4), pp.1197-1211. ⟨10.1111/nph.12735⟩ Journal articles hal-02379657v1
	The iRoCS Toolbox - 3D analysis of the plant root apical meristem at cellular resolution Thorsten Schmidt , Taras Pasternak , Kun Liu , Thomas Blein , Dorothée Aubry-Hivet The Plant Journal, 2014, 77 (5), pp.806-814. ⟨10.1111/tpj.12429⟩ Journal articles hal-02379660v1
	Combinations of Mutations Sufficient to Alter Arabidopsis Leaf Dissection Thomas Blein , Veronique Pautot , Patrick P. Laufs Plants, 2013, 2 (2), pp.230-247. ⟨10.3390/plants2020230⟩ Journal articles hal-02379666v1
	Variational attenuation correction in two-view confocal microscopy Torsten Schmidt , Jasmin Dürr , Margret Keuper , Thomas Blein , Klaus Palme BMC Bioinformatics, 2013, 14, pp.1-17. ⟨10.1186/1471-2105-14-366⟩ Journal articles hal-01204091v1
	Modification of plant Rac/Rop GTPase signalling using bacterial toxin transgenes Manoj Kumar Singh , Fugang Ren , Torsten Giesemann , Cristina Dal Bosco , Taras Pasternak The Plant Journal, 2012, 73 (2), pp.314-324. ⟨10.1111/tpj.12040⟩ Journal articles hal-02379668v1
	Evolution and diverse roles of the cup-shaped cotyledon genes in [i]Arabidopsis[/i] leaf development Alice A. Hasson , Anne A. Plessis , Thomas T. Blein , Bernard B. Adroher , Stephen S. Grigg The Plant cell, 2011, 23 (1), pp.54-68. ⟨10.1105/tpc.110.081448⟩ Journal articles hal-01001165v1
	Leaving the meristem behind: the genetic and molecular control of leaf patterning and morphogenesis Alice Hasson , Thomas Blein , Patrick Laufs Comptes Rendus Biologies, 2010, 333 (4), pp.350-360. ⟨10.1016/j.crvi.2010.01.013⟩ Journal articles hal-01203897v1
	Leaf development: what it needs to be complex Thomas Blein , Alice Hasson , Patrick Laufs Current Opinion in Plant Biology, 2010, 13 (1), pp.75-82. ⟨10.1016/j.pbi.2009.09.017⟩ Journal articles hal-01203937v1
	A Conserved Molecular Framework for Compound Leaf Development Thomas T. Blein , Amada Pulido , Aurélie Vialette-Guiraud , Krisztina Nikovics , Halima H. Morin Science, 2008, 322 (5909), pp.1835-1839. ⟨10.1126/science.1166168⟩ Journal articles hal-02263093v1
	Interplay of miR164, CUP-SHAPED COTYLEDON genes and LATERAL SUPPRESSOR controls axillary meristem formation in Arabidopsis thaliana Smita Raman , Thomas Greb , Alexis Peaucelle , Thomas Blein , Patrick Laufs The Plant Journal, 2008, 55 (1), pp.65-76. ⟨10.1111/j.1365-313X.2008.03483.x⟩ Journal articles hal-01604969v1
	The balance between the MIR164A and CUC2 genes controls leaf margin serration in Arabidopsis Krisztina Nikovics , Thomas T. Blein , Alexis A. Peaucelle , Tetsuya Ishida , Halima H. Morin The Plant cell, 2006, 18 (11), pp.2929-2945 Journal articles hal-02669130v1

	Surface parameterization and registration for statistical multiscale atlasing of organ development Faïçal Selka , Jasmine Burguet , Eric Biot , Thomas T. Blein , Patrick Laufs IEEE Conference on Computer Vision and Pattern Recognition (CVPR) Workshops, Jun 2019, Long Beach, Californie, United States. ⟨10.1109/CVPRW.2019.00022⟩ Conference papers hal-02733984v1
	Spatiotemporal quantification of 3D cellular parameters during leaf morphogenesis Faïçal Selka , Thomas T. Blein , Jasmine Burguet-de Curières , Eric Biot , Patrick Laufs Quantitative BioImaging Conference, Jan 2019, Rennes, France Conference papers hal-02786234v1
	Statistical multi-scale atlasing of leaf morphogenesis Faïçal Selka , Jasmine Burguet , Eric Biot , Thomas T. Blein , Patrick Laufs 7. International Workshop on Image Analysis Methos for the Plant Sciences 2019 (IAMPSI1́9), Jul 2019, Lyon, France Conference papers hal-02733992v1
	Long ncRNAs and epigenetic regulations are attractive candidate elements for the orchestration of symbiotic gene expression in M. truncatula. Yann Pecrix , S Evan Staton , Erika Sallet , Christine Lelandais Briere , Sandra Moreau International plant epigenetics symposium, ERC (European Research Council) and the RFI Objectif Végétal regional programme, Oct 2018, Angers, France Conference papers hal-03355269v1
	Towards a spatio-temporal atlas of 3D cellular parameters during leaf morphogenesis Faïçal Selka , Thomas T. Blein , Jasmine Burguet , Eric Biot , Patrick Laufs 16. IEEE International Conference on Computer Vision (ICCV 2017), Oct 2017, Venise, Italy. 3212 p., ⟨10.1109/ICCVW.2017.14⟩ Conference papers hal-02737139v1
	A conserved role for CUP-SHAPED COTYLEDON transcription factors during ovule development Beatriz Goncalves , Katia Belcram , Millan Cortizo , Alice Hasson , Thomas Blein The 26th international conference on Arabidopsis research (ICAR2015), Jul 2015, PARIS, France Conference papers hal-03759028v1
	Discriminative detection and alignment in volumetric data Dominic Mai , Philipp Fischer , Thomas T. Blein , Jasmin Duerr , Klaus Palme 35th German Conference on Pattern Recognition (GCPR), Sep 2013, Saarbrucken, Germany. pp.10 Conference papers hal-02747948v1

	MicroRNAs (miRNAs) and plant development Thomas Blein , Patrick Laufs eLS, John Wiley and Sons Ltd, 2016, 9780470015902. ⟨10.1002/9780470015902.a0020106.pub2⟩ Book sections hal-01533904v1

	The Arabidopsis RNA-binding protein SGS3 is recruited to the chromatin remodeler CHR11 to promote siRNA production from protein-coding genes Taline Elmayan , Thomas Blein , Emilie Elvira-Matelot , Ivan Le Masson , Aurélie Christ 2024 Preprints, Working Papers, ... hal-04729123v1
	The transcription factor NF-YA10 determines the area explored by Arabidopsis thaliana roots through direct regulation of LAZY and TAC genes Andana Barrios , Nicolas Gaggion , Natanael Mansilla , Leandro Lucero , Thomas Blein 2023 Preprints, Working Papers, ... hal-04299899v1
	Sequence-unrelated long noncoding RNAs converged to modulate the activity of conserved epigenetic machineries across kingdoms Camille Fonouni-Farde , Aurélie Christ , Thomas Blein , Juan Sebastián Ramírez-Prado , María Florencia Legascue 2021 Preprints, Working Papers, ... hal-03432759v1
	Identification and functional prediction of anthocyanin biosynthesis regulatory long non-coding RNAs (lncRNAs) in carrot Constanza Chialva , Thomas Blein , Martin Crespi , Diego Lijavetzky 2020 Preprints, Working Papers, ... hal-03016329v1
	ChronoRoot: High-throughput phenotyping by deep segmentation networks reveals novel temporal parameters of plant root system architecture Nicolás Gaggion , Federico Ariel , Vladimir Daric , Eric Lambert , Simon Legendre 2020 Preprints, Working Papers, ... hal-03016324v1
	The lncRNA MARS modulates the epigenetic reprogramming of the marneral cluster in response to ABA Thomas Roulé , Federico Ariel , Caroline Hartmann , Jose Gutierrez-Marcos , Nosheen Hussain 2020 Preprints, Working Papers, ... hal-03016338v1
	Role of MPK4 in pathogen-associated molecular pattern-triggered alternative splicing in Arabidopsis Jérémie Bazin , Kiruthiga Mariappan , Thomas Blein , Ronny Voelz , Martin Crespi 2019 Preprints, Working Papers, ... hal-02399302v1
	Genome sequence of the cluster root forming white lupin; Barbara Hufnagel , André Marques , Alexandre Soriano , Laurence Marquès , Fanchon Divol 2019 Preprints, Working Papers, ... hal-02790529v1
	Two ecotype-related long non-coding RNAs in the environmental control of root growth Thomas Blein , Coline Balzergue , Thomas Roulé , Marc Gabriel , Laetitia Scalisi 2019 Preprints, Working Papers, ... hal-02399291v1
	Light dynamically regulates growth rate and cellular organisation of the Arabidopsis root meristem Thomas Blein , Jasmin Duerr , Taras Pasternak , Thomas Haser , Thorsten Falk 2018 Preprints, Working Papers, ... hal-02399357v1

	Le rôle des gènes NAM/CUC dans le développement de la feuille Thomas Blein Sciences du Vivant [q-bio]. 2008. Français. ⟨NNT : ⟩ Theses tel-02823456v1

Thomas Blein

Publications

From environmental responses to adaptation: the roles of plant lncRNAs

The Compact Root Architecture 2 systemic pathway is required for the repression of cytokinins and miR399 accumulation in Medicago truncatula N-limited plants

Synergistic action of the Arabidopsis spliceosome components PRP39a and SmD1b in promoting posttranscriptional transgene silencing

Transcription factors KANADI 1, MYB DOMAIN PROTEIN 44, and PHYTOCHROME INTERACTING FACTOR 4 regulate long intergenic noncoding RNAs expressed in Arabidopsis roots

The long intergenic noncoding RNA ARES modulates root architecture in Arabidopsis

Variable selection in sparse GLARMA models

The lncRNA MARS modulates the epigenetic reprogramming of the marneral cluster in response to ABA

The Arabidopsis APOLO and human UPAT sequence-unrelated long noncoding RNAs can modulate DNA and histone methylation machineries in plants

Insights into long non-coding RNA regulation of anthocyanin carrot root pigmentation

Regulatory long non-coding RNAs in root growth and development

ChronoRoot: High-throughput phenotyping by deep segmentation networks reveals novel temporal parameters of plant root system architecture

Full Length Transcriptome Highlights the Coordination of Plastid Transcript Processing

Role of MPK4 in pathogen-associated molecular pattern-triggered alternative splicing in Arabidopsis

High-quality genome sequence of white lupin provides insight into soil exploration and seed quality

R-Loop Mediated trans Action of the APOLO Long Noncoding RNA

Landscape of the Noncoding Transcriptome Response of Two Arabidopsis Ecotypes to Phosphate Starvation

Wheat chromatin architecture is organized in genome territories and transcription factories

The Arabidopsis lnc RNA ASCO modulates the transcriptome through interaction with splicing factors

GCN5 modulates salicylic acid homeostasis by regulating H3K14ac levels at the 5′ and 3′ ends of its target genes

Whole-genome landscape of Medicago truncatula symbiotic genes

Nuclear Speckle RNA Binding Proteins Remodel Alternative Splicing and the Non-coding Arabidopsis Transcriptome to Regulate a Cross-Talk Between Auxin and Immune Responses

Arabidopsis HEAT SHOCK TRANSCRIPTION FACTORA1b regulates multiple developmental genes under benign and stress conditions

GDP-L-fucose is required for boundary definition in plants

A SWI/SNF Chromatin Remodelling Protein Controls Cytokinin Production through the Regulation of Chromatin Architecture

A miR169 isoform regulates specific NF-YA targets and root architecture in Arabidopsis

The iRoCS Toolbox - 3D analysis of the plant root apical meristem at cellular resolution

Combinations of Mutations Sufficient to Alter Arabidopsis Leaf Dissection

Variational attenuation correction in two-view confocal microscopy

Modification of plant Rac/Rop GTPase signalling using bacterial toxin transgenes

Evolution and diverse roles of the cup-shaped cotyledon genes in [i]Arabidopsis[/i] leaf development

Leaving the meristem behind: the genetic and molecular control of leaf patterning and morphogenesis

Leaf development: what it needs to be complex

A Conserved Molecular Framework for Compound Leaf Development

Interplay of miR164, CUP-SHAPED COTYLEDON genes and LATERAL SUPPRESSOR controls axillary meristem formation in Arabidopsis thaliana

The balance between the MIR164A and CUC2 genes controls leaf margin serration in Arabidopsis

Surface parameterization and registration for statistical multiscale atlasing of organ development

Spatiotemporal quantification of 3D cellular parameters during leaf morphogenesis

Statistical multi-scale atlasing of leaf morphogenesis

Long ncRNAs and epigenetic regulations are attractive candidate elements for the orchestration of symbiotic gene expression in M. truncatula.

Towards a spatio-temporal atlas of 3D cellular parameters during leaf morphogenesis

A conserved role for CUP-SHAPED COTYLEDON transcription factors during ovule development

Discriminative detection and alignment in volumetric data

MicroRNAs (miRNAs) and plant development

The Arabidopsis RNA-binding protein SGS3 is recruited to the chromatin remodeler CHR11 to promote siRNA production from protein-coding genes

The transcription factor NF-YA10 determines the area explored by Arabidopsis thaliana roots through direct regulation of LAZY and TAC genes

Sequence-unrelated long noncoding RNAs converged to modulate the activity of conserved epigenetic machineries across kingdoms

Identification and functional prediction of anthocyanin biosynthesis regulatory long non-coding RNAs (lncRNAs) in carrot

ChronoRoot: High-throughput phenotyping by deep segmentation networks reveals novel temporal parameters of plant root system architecture

The lncRNA MARS modulates the epigenetic reprogramming of the marneral cluster in response to ABA

Role of MPK4 in pathogen-associated molecular pattern-triggered alternative splicing in Arabidopsis

Genome sequence of the cluster root forming white lupin;

Two ecotype-related long non-coding RNAs in the environmental control of root growth

Light dynamically regulates growth rate and cellular organisation of the Arabidopsis root meristem

Le rôle des gènes NAM/CUC dans le développement de la feuille