Thomas Blein

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The transcription factor NF-YA10 determines the area explored by Arabidopsis thaliana roots through direct regulation of LAZY and TAC genes

Andana Barrios , Nicolas Gaggion , Natanael Mansilla , Leandro Lucero , Thomas Blein et al.

The Plant Journal, 2025, 121 (5), pp.e70016. ⟨10.1101/2023.04.26.538431⟩

Article dans une revue hal-04299899v1
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From non-coding to chromatin regulators: VIVIpary and the rise of lncRNAs in plant biology

Pablo Mammi , Thomas Blein

Molecular Plant, 2025, 18 (8), pp.1259-1261. ⟨10.1016/j.molp.2025.06.011⟩

Article dans une revue hal-05409919v1
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Arabidopsis SGS3 is recruited to chromatin by CHR11 to select RNA that initiate siRNA production

Taline Elmayan , Thomas Blein , Emilie Elvira-Matelot , Ivan Le Masson , Aurélie Christ et al.

Nature Communications, 2025, 16 (1), pp.2978. ⟨10.1038/s41467-025-57394-5⟩

Article dans une revue hal-05012332v1

Subunit 3 of the SUPERKILLER complex mediates microRNA172-directed cleavage of Nodule Number Control 1 in Medicago truncatula

Soledad Traubenik , Mauricio Alberto Reynoso , Francisco Sánchez-Rodríguez , Milagros Yacullo , Aurelie Christ et al.

Plant Physiology, 2025, 199 (2), pp.kiaf425. ⟨10.1093/plphys/kiaf425⟩

Article dans une revue hal-05409917v1

The Compact Root Architecture 2 systemic pathway is required for the repression of cytokinins and miR399 accumulation in Medicago truncatula N-limited plants

Luca Argirò , Carole Laffont , Corentin Moreau , Carol Moreau , Yangyang Su et al.

Journal of Experimental Botany, 2024, 75 (18), pp.5667-5680. ⟨10.1093/jxb/erae281⟩

Article dans une revue hal-04678694v1

From environmental responses to adaptation: the roles of plant lncRNAs

Soledad Traubenik , Céline Charon , Thomas Blein

Plant Physiology, 2024, 195 (1), pp.232-244. ⟨10.1093/plphys/kiae034⟩

Article dans une revue hal-04601515v1
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Transcription factors KANADI 1, MYB DOMAIN PROTEIN 44, and PHYTOCHROME INTERACTING FACTOR 4 regulate long intergenic noncoding RNAs expressed in Arabidopsis roots

Li Liu , Michel Heidecker , Thomas Depuydt , Nicolas Manosalva Perez , Martin Crespi et al.

Plant Physiology, 2023, 193 (3), pp.1933-1953. ⟨10.1093/plphys/kiad360⟩

Article dans une revue hal-04299815v1
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The long intergenic noncoding RNA ARES modulates root architecture in Arabidopsis

Thomas Roulé , María Florencia Legascue , Andana Barrios , Nicolás Gaggion , Martin Crespi et al.

IUBMB Life, 2023, 75 (10), pp.880-892. ⟨10.1002/iub.2761⟩

Article dans une revue hal-04299803v1
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Synergistic action of the Arabidopsis spliceosome components PRP39a and SmD1b in promoting posttranscriptional transgene silencing

Jérémie Bazin , Emilie Elvira-Matelot , Thomas Blein , Vincent Jauvion , Nathalie Bouteiller et al.

The Plant cell, 2023, 35 (6), pp.1917-1935. ⟨10.1093/plcell/koad091⟩

Article dans une revue hal-04298436v1
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The Arabidopsis APOLO and human UPAT sequence-unrelated long noncoding RNAs can modulate DNA and histone methylation machineries in plants

Camille Fonouni-Farde , Aurélie Christ , Thomas Blein , María Florencia Legascue , Lucía Ferrero et al.

Genome Biology, 2022, 23 (1), pp.181. ⟨10.1186/s13059-022-02750-7⟩

Article dans une revue hal-03768549v1
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Variable selection in sparse GLARMA models

Marina Gomtsyan , Céline Lévy-Leduc , Sarah Ouadah , Laure Sansonnet , Thomas Blein

Statistics, 2022, 56 (4), pp.755-784. ⟨10.1080/02331888.2022.2090943⟩

Article dans une revue hal-03763853v1
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The lncRNA MARS modulates the epigenetic reprogramming of the marneral cluster in response to ABA

Thomas Roulé , Aurelie Christ , Nosheen Hussain , Ying Huang , Caroline Hartmann et al.

Molecular Plant, 2022, 15 (5), pp.1-58. ⟨10.1016/j.molp.2022.02.007⟩

Article dans une revue hal-03698779v1
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Insights into long non-coding RNA regulation of anthocyanin carrot root pigmentation

Constanza Chialva , Thomas Blein , Martin Crespi , Diego Lijavetzky

Scientific Reports, 2021, 11 (1), ⟨10.1038/s41598-021-83514-4⟩

Article dans une revue hal-03324569v1
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ChronoRoot: High-throughput phenotyping by deep segmentation networks reveals novel temporal parameters of plant root system architecture

Nicolás Gaggion , Federico Ariel , Vladimir Daric , Eric Lambert , Simon Legendre et al.

GigaScience, 2021, 10 (7), pp.giab052. ⟨10.1093/gigascience/giab052⟩

Article dans une revue hal-03324566v1
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Full Length Transcriptome Highlights the Coordination of Plastid Transcript Processing

Marine Guilcher , Arnaud Liehrmann , Chloé Seyman , Thomas Blein , Guillem Rigaill et al.

International Journal of Molecular Sciences, 2021, 22 (20), pp.1-15. ⟨10.3390/ijms222011297⟩

Article dans une revue hal-03343771v1
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Regulatory long non-coding RNAs in root growth and development

Thomas Roulé , Martin Crespi , Thomas Blein

Biochemical Society Transactions, 2021, pp.1-18. ⟨10.1042/BST20210743⟩

Article dans une revue hal-03555826v1

R-Loop Mediated trans Action of the APOLO Long Noncoding RNA

Federico Ariel , Leandro Lucero , Aurelie Christ , Maria Florencia Mammarella , Teddy Jegu et al.

Molecular Cell, 2020, 77 (5), pp.1055-1065. ⟨10.1016/j.molcel.2019.12.015⟩

Article dans une revue hal-02964078v1
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High-quality genome sequence of white lupin provides insight into soil exploration and seed quality

Barbara Hufnagel , André Marques , Alexandre Soriano , Laurence Marquès , Fanchon Divol et al.

Nature Communications, 2020, 11 (1), pp.492. ⟨10.1038/s41467-019-14197-9⟩

Article dans une revue hal-02460008v1
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Landscape of the Noncoding Transcriptome Response of Two Arabidopsis Ecotypes to Phosphate Starvation

Thomas Blein , Coline Balzergue , Thomas Roulé , Marc Gabriel , Laetitia Scalisi et al.

Plant Physiology, 2020, 183 (3), pp.1058-1072. ⟨10.1104/pp.20.00446⟩

Article dans une revue cea-02962421v1
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Wheat chromatin architecture is organized in genome territories and transcription factories

Lorenzo Concia , Alaguraj Veluchamy , Juan Ramirez-Prado , Azahara Martin-Ramirez , Ying Huang et al.

Genome Biology, 2020, 21 (1), pp.1-20. ⟨10.1186/s13059-020-01998-1⟩

Article dans une revue hal-02571325v1
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GCN5 modulates salicylic acid homeostasis by regulating H3K14ac levels at the 5′ and 3′ ends of its target genes

Soonkap Kim , Sophie Piquerez , Juan Ramirez-Prado , Emmanouil Mastorakis , Alaguraj Veluchamy et al.

Nucleic Acids Research, 2020, 48 (11), pp.5953-5966. ⟨10.1093/nar/gkaa369⟩

Article dans une revue hal-02889481v1

The Arabidopsis lnc RNA ASCO modulates the transcriptome through interaction with splicing factors

Richard Rigo , Jérémie Bazin , Natali Romero‐barrios , Michaël Moison , Leandro Lucero et al.

EMBO Reports, 2020, 21 (5), pp.1-19. ⟨10.15252/embr.201948977⟩

Article dans une revue hal-02991642v1
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Role of MPK4 in pathogen-associated molecular pattern-triggered alternative splicing in Arabidopsis

Jérémie Bazin , Kiruthiga G Mariappan , Yunhe Jiang , Thomas Blein , Ronny Voelz et al.

PLoS Pathogens, 2020, 16 (4), pp.e1008401. ⟨10.1371/journal.ppat.1008401⟩

Article dans une revue hal-03015159v1

High-quality genome sequence of white lupin provides insight into soil exploration and seed quality

Bárbara Hufnagel , André Marques , Alexandre Soriano , Laurence Marquès , Fanchon Divol et al.

Nature Communications, 2020, 11 (1), pp.492. ⟨10.1038/s41467-019-14197-9⟩

Article dans une revue hal-04721448v1
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Nuclear Speckle RNA Binding Proteins Remodel Alternative Splicing and the Non-coding Arabidopsis Transcriptome to Regulate a Cross-Talk Between Auxin and Immune Responses

Jérémie Bazin , Natali Romero , Richard Rigo , Céline Charon , Thomas Blein et al.

Frontiers in Plant Science, 2018, 9, pp.1209. ⟨10.3389/fpls.2018.01209⟩

Article dans une revue hal-02379622v1
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Arabidopsis HEAT SHOCK TRANSCRIPTION FACTORA1b regulates multiple developmental genes under benign and stress conditions

Waleed Albihlal , Irabonosi Obomighie , Thomas Blein , Ramona Persad , Igor Chernukhin et al.

Journal of Experimental Botany, 2018, 69 (11), pp.2847-2862. ⟨10.1093/jxb/ery142⟩

Article dans une revue hal-02379644v1

Whole-genome landscape of Medicago truncatula symbiotic genes

Yann Pecrix , S. Evan Staton , Erika Sallet , Christine Lelandais-Brière , Sandra Moreau et al.

Nature Plants, 2018, 4 (12), pp.1017-1025. ⟨10.1038/s41477-018-0286-7⟩

Article dans une revue hal-04779324v1
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GDP-L-fucose is required for boundary definition in plants

Beatriz Goncalves , Aude Maugarny-Calès , Bernard B. Adroher , Millan Cortizo , Néro N. Borrega et al.

Journal of Experimental Botany, 2017, 68 (21-22), pp.5801-5811. ⟨10.1093/jxb/erx402⟩

Article dans une revue hal-02379649v1
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A SWI/SNF Chromatin Remodelling Protein Controls Cytokinin Production through the Regulation of Chromatin Architecture

Teddy Jegu , Séverine Domenichini , Thomas Blein , Federico Ariel , Aurélie Christ et al.

PLoS ONE, 2015, 10 (10), pp.e0138276. ⟨10.1371/journal.pone.0138276⟩

Article dans une revue hal-02379647v1

The iRoCS Toolbox - 3D analysis of the plant root apical meristem at cellular resolution

Thorsten Schmidt , Taras Pasternak , Kun Liu , Thomas Blein , Dorothée Aubry-Hivet et al.

The Plant Journal, 2014, 77 (5), pp.806-814. ⟨10.1111/tpj.12429⟩

Article dans une revue hal-02379660v1

A miR169 isoform regulates specific NF-YA targets and root architecture in Arabidopsis

Céline Sorin , Marie Declerck , Aurélie Christ , Thomas Blein , Linnan Ma et al.

New Phytologist, 2014, 202 (4), pp.1197-1211. ⟨10.1111/nph.12735⟩

Article dans une revue hal-02379657v1
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Variational attenuation correction in two-view confocal microscopy

Torsten Schmidt , Jasmin Dürr , Margret Keuper , Thomas Blein , Klaus Palme et al.

BMC Bioinformatics, 2013, 14, pp.1-17. ⟨10.1186/1471-2105-14-366⟩

Article dans une revue hal-01204091v1
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Combinations of Mutations Sufficient to Alter Arabidopsis Leaf Dissection

Thomas Blein , Veronique Pautot , Patrick P. Laufs

Plants, 2013, 2 (2), pp.230-247. ⟨10.3390/plants2020230⟩

Article dans une revue hal-02379666v1

Modification of plant Rac/Rop GTPase signalling using bacterial toxin transgenes

Manoj Kumar Singh , Fugang Ren , Torsten Giesemann , Cristina Dal Bosco , Taras Pasternak et al.

The Plant Journal, 2012, 73 (2), pp.314-324. ⟨10.1111/tpj.12040⟩

Article dans une revue hal-02379668v1
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Evolution and diverse roles of the cup-shaped cotyledon genes in [i]Arabidopsis[/i] leaf development

Alice A. Hasson , Anne A. Plessis , Thomas T. Blein , Bernard B. Adroher , Stephen S. Grigg et al.

The Plant cell, 2011, 23 (1), pp.54-68. ⟨10.1105/tpc.110.081448⟩

Article dans une revue hal-01001165v1

Leaving the meristem behind: the genetic and molecular control of leaf patterning and morphogenesis

Alice Hasson , Thomas Blein , Patrick Laufs

Comptes Rendus. Biologies, 2010, 333 (4), pp.350-360. ⟨10.1016/j.crvi.2010.01.013⟩

Article dans une revue istex hal-01203897v1

Leaf development: what it needs to be complex

Thomas Blein , Alice Hasson , Patrick Laufs

Current Opinion in Plant Biology, 2010, 13 (1), pp.75-82. ⟨10.1016/j.pbi.2009.09.017⟩

Article dans une revue istex hal-01203937v1

A Conserved Molecular Framework for Compound Leaf Development

Thomas T. Blein , Amada Pulido , Aurélie Vialette-Guiraud , Krisztina Nikovics , Halima H. Morin et al.

Science, 2008, 322 (5909), pp.1835-1839. ⟨10.1126/science.1166168⟩

Article dans une revue hal-02263093v1

Interplay of miR164, CUP-SHAPED COTYLEDON genes and LATERAL SUPPRESSOR controls axillary meristem formation in Arabidopsis thaliana

Smita Raman , Thomas Greb , Alexis Peaucelle , Thomas Blein , Patrick Laufs et al.

The Plant Journal, 2008, 55 (1), pp.65-76. ⟨10.1111/j.1365-313X.2008.03483.x⟩

Article dans une revue hal-01604969v1

The balance between the MIR164A and CUC2 genes controls leaf margin serration in Arabidopsis

Krisztina Nikovics , Thomas T. Blein , Alexis A. Peaucelle , Tetsuya Ishida , Halima H. Morin et al.

The Plant cell, 2006, 18 (11), pp.2929-2945

Article dans une revue hal-02669130v1

Statistical multi-scale atlasing of leaf morphogenesis

Faïçal Selka , Jasmine Burguet , Eric Biot , Thomas T. Blein , Patrick Laufs et al.

7. International Workshop on Image Analysis Methos for the Plant Sciences 2019 (IAMPSI1́9), Jul 2019, Lyon, France

Communication dans un congrès hal-02733992v1

Spatiotemporal quantification of 3D cellular parameters during leaf morphogenesis

Faïçal Selka , Thomas T. Blein , Jasmine Burguet-de Curières , Eric Biot , Patrick Laufs et al.

Quantitative BioImaging Conference, Jan 2019, Rennes, France

Communication dans un congrès hal-02786234v1

Surface parameterization and registration for statistical multiscale atlasing of organ development

Faïçal Selka , Jasmine Burguet , Eric Biot , Thomas T. Blein , Patrick Laufs et al.

IEEE Conference on Computer Vision and Pattern Recognition (CVPR) Workshops, Jun 2019, Long Beach, Californie, United States. ⟨10.1109/CVPRW.2019.00022⟩

Communication dans un congrès hal-02733984v1

Long ncRNAs and epigenetic regulations are attractive candidate elements for the orchestration of symbiotic gene expression in M. truncatula.

Yann Pecrix , S Evan Staton , Erika Sallet , Christine Lelandais Briere , Sandra Moreau et al.

International plant epigenetics symposium, ERC (European Research Council) and the RFI Objectif Végétal regional programme, Oct 2018, Angers, France

Communication dans un congrès hal-03355269v1

Towards a spatio-temporal atlas of 3D cellular parameters during leaf morphogenesis

Faïçal Selka , Thomas T. Blein , Jasmine Burguet , Eric Biot , Patrick Laufs et al.

16. IEEE International Conference on Computer Vision (ICCV 2017), Oct 2017, Venise, Italy. 3212 p., ⟨10.1109/ICCVW.2017.14⟩

Communication dans un congrès hal-02737139v1

A conserved role for CUP-SHAPED COTYLEDON transcription factors during ovule development

Beatriz Goncalves , Katia Belcram , Millan Cortizo , Alice Hasson , Thomas Blein et al.

The 26th international conference on Arabidopsis research (ICAR2015), Jul 2015, PARIS, France

Communication dans un congrès hal-03759028v1

Discriminative detection and alignment in volumetric data

Dominic Mai , Philipp Fischer , Thomas T. Blein , Jasmin Duerr , Klaus Palme et al.

35th German Conference on Pattern Recognition (GCPR), Sep 2013, Saarbrucken, Germany. pp.10

Communication dans un congrès hal-02747948v1

ChronoRoot 2.0: An Open AI-Powered Platform for 2D Temporal Plant Phenotyping

Nicolás Gaggion , Rodrigo Bonazzola , María Florencia Legascue , María Florencia Mammarella , Florencia Sol Rodriguez et al.

2025

Pré-publication, Document de travail hal-05409929v1

The Arabidopsis RNA-binding protein SGS3 is recruited to the chromatin remodeler CHR11 to promote siRNA production from protein-coding genes

Taline Elmayan , Thomas Blein , Emilie Elvira-Matelot , Ivan Le Masson , Aurélie Christ et al.

2024

Pré-publication, Document de travail hal-04729123v1

Sequence-unrelated long noncoding RNAs converged to modulate the activity of conserved epigenetic machineries across kingdoms

Camille Fonouni-Farde , Aurélie Christ , Thomas Blein , Juan Sebastián Ramírez-Prado , María Florencia Legascue et al.

2021

Pré-publication, Document de travail hal-03432759v1
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The lncRNA MARS modulates the epigenetic reprogramming of the marneral cluster in response to ABA

Thomas Roulé , Federico Ariel , Caroline Hartmann , Jose Gutierrez-Marcos , Nosheen Hussain et al.

2020

Pré-publication, Document de travail hal-03016338v1
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ChronoRoot: High-throughput phenotyping by deep segmentation networks reveals novel temporal parameters of plant root system architecture

Nicolás Gaggion , Federico Ariel , Vladimir Daric , Eric Lambert , Simon Legendre et al.

2020

Pré-publication, Document de travail hal-03016324v1
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Identification and functional prediction of anthocyanin biosynthesis regulatory long non-coding RNAs (lncRNAs) in carrot

Constanza Chialva , Thomas Blein , Martin Crespi , Diego Lijavetzky

2020

Pré-publication, Document de travail hal-03016329v1
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Genome sequence of the cluster root forming white lupin;

Barbara Hufnagel , André Marques , Alexandre Soriano , Laurence Marquès , Fanchon Divol et al.

2019

Pré-publication, Document de travail (preprint/prepublication) hal-02790529v1

Role of MPK4 in pathogen-associated molecular pattern-triggered alternative splicing in Arabidopsis

Jérémie Bazin , Kiruthiga Mariappan , Thomas Blein , Ronny Voelz , Martin Crespi et al.

2019

Pré-publication, Document de travail hal-02399302v1

Two ecotype-related long non-coding RNAs in the environmental control of root growth

Thomas Blein , Coline Balzergue , Thomas Roulé , Marc Gabriel , Laetitia Scalisi et al.

2019

Pré-publication, Document de travail hal-02399291v1

Light dynamically regulates growth rate and cellular organisation of the Arabidopsis root meristem

Thomas Blein , Jasmin Duerr , Taras Pasternak , Thomas Haser , Thorsten Falk et al.

2018

Pré-publication, Document de travail hal-02399357v1