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Violette Thermes

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Looking for a needle in a haystack: de novo phenotypic target identification reveals Hippo pathway-mediated miR-202 regulation of egg production

Sarah JANATI IDRISSI , Mariana Roza de Abreu , Cervin Guyomar , Fernanda de Mello , Thuy Thao Vi Nguyen
Nucleic Acids Research, 2024, 52 (2), pp.738-754. ⟨10.1093/nar/gkad1154⟩
Journal articles hal-04501492v1

An end-to-end pipeline based on open source deep learning tools for reliable analysis of complex 3D images of ovaries

Manon Lesage , Manon Thomas , Thierry Pécot , Tu-Ky Ly , Nathalie Hinfray
Development (Cambridge, England), 2023, 150 (7), pp.dev201185. ⟨10.1242/dev.201185⟩
Journal articles hal-04062159v1
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Deciphering sex-specific miRNAs as heat-recorders in zebrafish

Tosca A van Gelderen , Jérôme Montfort , José Antonio Álvarez-Dios , Violette Thermes , Francesc Piferrer
Scientific Reports, 2022, 12, pp.18722. ⟨10.1038/s41598-022-21864-3⟩
Journal articles hal-03886962v1

Primordial germ cell migration and histological and molecular characterization of gonadal differentiation in Pachón Cavefish Astyanax mexicanus

Boudjema Imarazene , Séverine Beille , Elodie Jouanno , Adèle Branthonne , Violette Thermes
Sexual Development, 2021, pp.1-18. ⟨10.1159/000513378⟩
Journal articles hal-03166084v1
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A Comparison of Reproductive Performances in Young and Old Females: A Case Study on the Atlantic Bluefin Tuna in the Mediterranean Sea

Luca Marisaldi , Orsola Iorillo , Danilo Basili , Giorgia Gioacchini , Julien Bobe
Animals, 2021, 11, ⟨10.3390/ani11123340⟩
Journal articles hal-03448300v1

C-ECi: a CUBIC-ECi combined clearing method for three-dimensional follicular content analysis in the fish ovary

Manon Lesage , Manon Thomas , Jérôme Bugeon , Adèle Branthonne , Stéphanie Gay
Biology of Reproduction, 2020, 103 (5), pp.1099-1109. ⟨10.1093/biolre/ioaa142⟩
Journal articles hal-02935099v1
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MiR-202 controls female fecundity by regulating medaka oogenesis

Stéphanie Gay , Jérôme Bugeon , Amine Bouchareb , Laure Henry , Clara Delahaye
PLoS Genetics, 2018, 14 (9), pp.1-26. ⟨10.1371/journal.pgen.1007593⟩
Journal articles hal-01871468v1
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Genes involved in Drosophila melanogaster ovarian function are highly conserved throughout evolution

Sébastien Elis , Alice Desmarchais , Emilie Cardona , Sophie Fouchécourt , Rozenn Dalbies-Tran
Genome Biology and Evolution, 2018, 10 (10), pp.2629-2642. ⟨10.1093/gbe/evy158⟩
Journal articles hal-01991460v1
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Genome-wide identification of novel ovarian-predominant miRNAs: new insights from the medaka (Oryzias latipes)

Amine Bouchareb , Aurélie Le Cam , Jérôme Montfort , Stéphanie Gay , Thuy Thao Vi Nguyen
Scientific Reports, 2017, 7 (1), pp.1-11. ⟨10.1038/srep40241⟩
Journal articles hal-01594581v1
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High-resolution 3D imaging of whole organ after clearing: taking a new look at the zebrafish testis

Maxence Frétaud , Laurie Rivière , Stéphanie Gay , Jean-Jacques Lareyre , Jean-Stéphane Joly
Scientific Reports, 2017, 7, pp.1-12. ⟨10.1038/srep43012⟩
Journal articles hal-01505000v1

Evidence for two distinct waves of epidermal ionocyte differentiation during medaka embryonic development

Vincent Trayer , Nina Séjourné , Stéphanie Gay , Violette Thermes
Developmental Dynamics, 2015, 244 (7), pp.888-902. ⟨10.1002/dvdy.24290⟩
Journal articles hal-01182846v1

CILP1 is dynamically expressed in the developing musculoskeletal system of the trout

Cécile Ralliere , Maxence Frétaud , Violette Thermes , Pierre-Yves Rescan
International Journal of Developmental Biology, 2015, 59 (10-11-12), pp.505-509. ⟨10.1387/ijdb.150136pr⟩
Journal articles hal-01274514v1

Assessment of the role of cortisol and corticosteroid receptors in epidermal ionocyte development in the medaka (Oryzias latipes) embryos.

Vincent Trayer , Pung-Pung Hwang , Patrick Prunet , Violette Thermes
General and Comparative Endocrinology, 2013, 194, pp.152-161. ⟨10.1016/j.ygcen.2013.09.011⟩
Journal articles hal-01205073v1
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Acid secretion by mitochondrion-rich cells of medaka (Oryzias latipes) acclimated to acidic freshwater

Chia-Cheng Lin , Li-Yih Lin , Hao-Hsuan Hsu , Violette Thermes , Patrick Prunet
AJP - Regulatory, Integrative and Comparative Physiology, 2012, 302, pp.R283-R291. ⟨10.1152/ajpregu.00483.2011⟩
Journal articles hal-01205032v1

Expression of [i]Ol-foxi3[/i] and Na+/K+-ATPase in ionocytes during the development of euryhaline medaka [i](Oryzias latipes)[/i] embryos

Violette Thermes , Chia-Cheng Lin , Pung-Pung Hwang
Gene Expression Patterns, 2010, 10 (4-5), pp.185-192. ⟨10.1016/j.gep.2010.04.001⟩
Journal articles hal-01205006v1

Ol-insm1b, a SNAG family transcription factor involved in cell cycle arrest during medaka development.

Eva Candal , Alessandro Alunni , Violette Thermes , Françoise Jamen , Jean-Stéphane Joly
Developmental Biology, 2007, 309 (1), pp.1-17. ⟨10.1016/j.ydbio.2007.04.038⟩
Journal articles hal-00180070v1

Ol-insm1b, a SNAG family transcription factor involved in cell cycle arrest during medaka development

Eva Candal , Alessandro Alunni , Violette Thermes , Françoise Jamen , Jean-Stéphane Joly
Developmental Biology, 2007, 309 (1), pp.1-17. ⟨10.1016/j.ydbio.2007.04.038⟩
Journal articles hal-03379806v1

Evolutionary modification of mouth position in deuterostomes.

Lionel Christiaen , Yan Jaszczyszyn , Marina Kerfant , Shungo Kano , Violette Thermes
Seminars in Cell and Developmental Biology, 2007, 18 (4), pp.502-11. ⟨10.1016/j.semcdb.2007.06.002⟩
Journal articles hal-00180899v1

Medaka simplet (FAM53B) belongs to a family of novel vertebrate genes controlling cell proliferation.

Violette Thermes , Eva Candal , Alessandro Alunni , Guillaume Serin , Franck Bourrat
Development (Cambridge, England), 2006, 133 (10), pp.1881-90. ⟨10.1242/dev.02350⟩
Journal articles hal-00113755v1

Medaka as a model system for the characterisation of cell cycle regulators: a functional analysis of Ol-Gadd45gamma during early embryogenesis.

Eva Candal , Violette Thermes , Jean-Stéphane Joly , Franck Bourrat
Mechanisms of Development, 2004, 121 (7-8), pp.945-58. ⟨10.1016/j.mod.2004.03.007⟩
Journal articles hal-00121761v1

Effects of microcystin-LR on development of medaka fish embryos (Oryzias latipes).

Claire Jacquet , Violette Thermes , Amaury de Luze , Simone Puiseux-Dao , Cécile Bernard
Toxicon, 2004, 43 (2), pp.141-7. ⟨10.1016/j.toxicon.2003.11.010⟩
Journal articles hal-00121762v1

I-SceI meganuclease mediates highly efficient transgenesis in fish.

Violette Thermes , Clemens Grabher , Filomena Ristoratore , Franck Bourrat , André Choulika
Mech Dev, 2002, 118 (1-2), pp.91-8. ⟨10.1016/S0925-4773(02)00218-6⟩
Journal articles hal-00122203v1

The transgenesis among the Fishes.

Karine Deschet , Violette Thermes , Jean-Stéphane Joly
Bulletin De La Société Zoologique De France, 2001, 126 (3), pp.255-268
Journal articles hal-00123261v1

Maternal RNAs, fish and amphibians

Caroline Cheung , Julien Bobe , Violette Thermes
Encyclopedia of Reproduction, Volume 6: Comparative Reproduction (2ème ed.), Elsevier, Academic Press, 2018, 978-0-12-815145-7. ⟨10.1016/B978-0-12-809633-8.20566-9⟩
Book sections hal-02791192v1

Hippo pathway-mediated regulation of micropyle formation by microRNA 202 (miR-202) in the fish oocyte

Sarah JANATI IDRISSI , Mariana Roza de Abreu , Cervin Guyomar , Martin Pšenička , Fernanda de Mello
12. International Symposium on Reproductive Physiology of Fish, May 2023, Chersonissos, Greece
Conference papers hal-04210922v1
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Quantitative analysis of asynchronous oogenesis dynamics in fish: Application of a modern 3D analysis approach to an old problem

Manon Lesage , Mak Sully , Jérôme Bugeon , Manon Thomas , Stéphanie Gay
12. International Symposium on Reproductive Physiology of Fish (ISRPF), May 2023, Chersonissos, Greece
Conference papers hal-04187726v1
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Caractérisation des tissus adipeux chez la truite arc-en-ciel par imagerie 3D

Isabelle Hue , Adèle Branthonne , Manon Lesage , Morgane Chesnais , Violette Thermes
11. Journées Scientifiques et Techniques du Réseau des Microscopistes de l'INRAE, Nov 2022, Rennes, France
Conference papers hal-04187040v1

Hippo pathway-mediated regulation of micropyle formation by micro RNA 202 (miR-202) in the fish oocyte

Mariana Roza de Abreu , Sarah JANATI IDRISSI , Fernanda de Mello , Cervin Guyomar , Thuy Thao Vi Nguyen
8. International Workshop on the Biology of Fish Gametes, Sep 2022, Gdansk, Poland
Conference papers hal-04211036v1

Using 3D imaging to study ovarian development in Medaka

Manon Lesage , Manon Thomas , Jérôme Bugeon , Adèle Branthonne , Violette Thermes
12. Journées Scientifiques et Techniques du Rµi, Nov 2022, Rennes, France
Conference papers hal-03892521v1
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Integrating TGF-beta signalling pathways and epigenetic modulations for controlling sex determination in medaka

Alexandra Depince , Florent Murat , Mateus Contar Adolfi , Violette Thermes , Yann Guiguen
2. European Symposium on Sex Determination in Vertebrates, Oct 2022, Giens, France
Conference papers hal-03833209v1
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Mise en application d'algorithmes open-source de Deep-Learning pour l'analyse d'images 3D d'ovaires de Médaka

Manon Lesage , Jérôme Bugeon , Manon Thomas , Thierry Pécot , Violette Thermes
11. Journées Scientifiques et Techniques du Réseau des Microscopistes INRAE, Nov 2022, Rennes, France
Conference papers hal-04046034v1

A comprehensive 3D approach to unravel follicular growth dynamics that governs fecundity in medaka fish (Oryzias latipes)

Manon Lesage , Jérôme Bugeon , Manon Thomas , Stéphanie Gay , Thierry Pécot
14. International Congress on the Biology of Fish, Jun 2022, Montpellier, France
Conference papers hal-03764407v1
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Utilisation d’outils d’intelligence artificielle pour la segmentation d’images 3D d’ovaire de poisson

Manon Lesage , Jérôme Bugeon , Manon Thomas , Violette Thermes
17. Colloque de la Société Française de Microscopies, Jul 2021, Reims, France
Conference papers hal-03299572v1

Régulation de l'ovogenèse par les microARN chez le medaka

Violette Thermes
3. Journées scientifiques GDR 3606 REPRO : ReproSciences 2019, Centre National de la Recherche Scientifique (CNRS). FRA., Apr 2019, Toulouse, France
Conference papers hal-02787393v1

Cinétique de l'ovogenèse au cours du cycle reproducteur chez le médaka

Violette Thermes , Stéphanie Gay
3. Journées des Installations Expérimentales LPGP, Jun 2019, Rennes, France
Conference papers hal-03169545v1

What makes a good egg: new insights from CRISPR/Cas9 genome editing in fish model species

Caroline Cheung , Thuy Thao Vi Nguyen , Stéphanie Gay , Amélie Patinote , Emilie Cardona
7. International Workshop on the Biology of Fish Gametes, Sep 2019, Rennes, France. pp.71-72
Conference papers hal-02282328v1

What makes a fish egg able to be fertilized and subsequently develop into an embryo: new insights from CRISPR/Cas9 genome editing in model species

Caroline Cheung , Thuy Thao Vi Nguyen , Stéphanie Gay , Amélie Patinote , Emilie Cardona
Aquaculture Europe 2019, European Aquaculture Society (EAS). BEL., Oct 2019, Berlin, Germany
Conference papers hal-02284510v1

Utilisation de CRISPR/Cas9 pour l'étude du rôle des microARNs dans l'ovogenèse chez le médaka

Violette Thermes
Séminaire "Genome editing", Nov 2018, Nouzilly, France
Conference papers hal-02788905v1

Dynamique et régulation de la fécondité chez le poisson

Violette Thermes
Journée Mathématiques et Agronomie, Agence Lebesgue., Nov 2018, Saint-Gilles, France
Conference papers hal-02791396v1

Maternal-effect genes and egg quality: usual suspects and new players

Julien Bobe , Violette Thermes
6. International Workshop on the Biology of Fish Gametes, University of South Bohemia in České Budějovice. CZE., Sep 2017, Vodnany, Czech Republic. 156 p
Conference papers hal-01595100v1

Mir-202 knock-out in medaka drastically impairs female fertility

Stéphanie Gay , Jérôme Bugeon , Amine Bouchareb , Laure Henry , Julien Bobe
2. Journées scientifiques GDR 3606 REPRO : ReproSciences 2017, Centre National de la Recherche Scientifique (CNRS). FRA., Apr 2017, Tours, France
Conference papers hal-01594638v1

High resolution imaging of whole zebrafish samples after clearing

Maxence Frétaud , Violette Thermes
9. Imaging The Cell, Jun 2017, Rennes, France
Conference papers hal-02787716v1

MiR-202 knock-out in medaka drastically impairs female fertility

Stéphanie Gay , Jérôme Bugeon , Amine Bouchareb , Laure Henry , Julien Bobe
10. European Zebrafish Meeting, Jul 2017, Budapest, Hungary
Conference papers hal-01603044v1

Clearing and high-resolution 3D imaging of the whole medaka ovary

Maxence Frétaud , Stéphanie Gay , Amaury Herpin , Jean-Stéphane Joly , Armin Jenett
2. Journées scientifiques GDR 3606 REPRO : ReproSciences 2017, Centre National de la Recherche Scientifique (CNRS). FRA., Apr 2017, Tours, France
Conference papers hal-01595127v1

Analyzing microrna repertoires in eggs from 4 fish species can reveal secrets of both life history traits and embryo viability/quality

Amélie A. Juanchich , Kai Ove Skaftnesmo , Violette Thermes , Julien Bobe , Anna Wargelius
5. International Workshop on the Biology of Fish Gametes, Università Politecnica delle Marche. ITA., Sep 2015, Ancona, Italy. 290 p
Conference papers hal-02740533v1
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Identification of novel ovarian predominant MiRNAs in medaka

Amine Bouchareb , Aurélie Le Cam , Jérôme Montfort , Stéphanie Gay , Thuy Thao Vi Nguyen
9. European Zebrafish Meeting, Jun 2015, Oslo, Norway
Conference papers hal-02742954v1
Image document

What makes a good egg ? Molecular mechanisms defining egg developmental competence in teleost fish

Julien Bobe , Aurélien Bouleau , Caroline Cheung , Ozlem Yilmaz , Thuy Thao Vi Nguyen
1. Journées du GdR 3606 Repro, Université de Rennes 1 (UR1). Rennes, FRA., Apr 2015, Rennes, France. 105 p
Conference papers hal-01897087v1

Update on the regulation of gill functions by corticosteroid in fish

Patrick Prunet , Pia Kiilerich , Violette Thermes , Isabelle Leguen , Vincent Trayer
17. International Congress of Comparative Endocrinology, Jul 2013, Barcelone, Spain
Conference papers hal-02746877v1

The yolk-sac ionocyte lineage ontogenesis and its regulation by MR and GRs in Medaka embryo

Vincent Trayer , Isabelle Leguen , Jiun-Lin Horng , P.P. Hwang , Patrick Prunet
7. International Symposium on Fish Endocrinology, Sep 2012, Buenos Aires, Argentina
Conference papers hal-02748616v1

Role of corticosteroid receptors in fish osmoregulation: Is GR the only regulator?

Patrick Prunet , Pia Kiilerich , Vincent Trayer , Violette Thermes
7. International Symposium on Fish Endocrinology, Sep 2012, Buenos Aires, Argentina
Conference papers hal-02745681v1

Studying the development of osmoregulatory organs in the medaka: role of cortisol receptors

Vincent Trayer , Isabelle Leguen , J.L. Horng , P.P. Hwang , Patrick Prunet
2. Séminaire du réseau EFOR, Feb 2011, Paris, France
Conference papers hal-02806364v1

Utilisation des lignées transgéniques de l'amphibien Xenopus tropicalis pour l'étude de la régulation de promoteurs au cours du développement embryonnaire

Thierry Madigou , Brigitte Guillet , Anne L'Hostis-Guidet , J. Eyer , A. Bartheleix
1ère conférence Découverte des Génômes et Expression des Gènes. Paris 15 Mai 2003, 2003, Paris, France
Conference papers hal-00105166v1

Monitoring the Oogenesis Dynamics in the Medaka Ovary Using a Quantitative 3D Image Analysis Approach

Manon Lesage , Mak Sully , Manon Thomas , Stéphanie Gay , Thierry Pécot
12. European Zebrafish Meeting, Jul 2023, Krakow, Poland
Conference poster hal-04187761v1
Image document

Utilisation de l'imagerie en 3D pour caractériser l'organisation des tissus adipeux chez la truite arc-en-ciel

Adèle Branthonne , Manon Thomas , Violette Thermes , Isabelle Hue , Jérôme Bugeon
Mettez un peu de piquant dans vos recherches, Jun 2023, Dijon, France
Conference poster hal-04288888v1
Image document

Utilisation de l’Eci pour la transparisation chez le poisson : exemples d’applications pour l’imagerie 3D

Adèle Branthonne , Manon Thomas , Jérôme Bugeon , Jean-Charles Gabillard , Manon Lesage
32. Congrès de l'Association Française d'Histotechnologie, Jun 2019, Strasbourg, France. , 2019
Conference poster hal-02786189v1

Développement d'une nouvelle méthode pour l'analyse 3D de la dynamique ovarienne chez le poisson : Transparisation, microscopie, analyse d'image et modélisation

Manon Thomas , Stéphanie Gay , Jérôme Bugeon , Marie Haghebaert , Fabrice Mahé
Séminaire Défis Scientifiques du Département Physiologie Animale et Systèmes d'Elevage, Nov 2019, Rennes, France. 85 p., 2019, Recueil des résumés
Conference poster hal-02735123v1

Characterization of micropyle formation in medaka (Oryzias latipes) miR-202 -/- mutants

Mariana Roza de Abreu , Manon Lesage , Stéphanie Gay , Thuy Thao Vi Nguyen , Cécile Duret
7. International Workshop on the Biology of Fish Gametes, Sep 2019, Rennes, France. , pp.155-156, 2019
Conference poster hal-02282254v1

Identification and functional characterization of ovarian and maternally-inherited miRNAs in medaka

Stéphanie Gay , Jérôme Montfort , Fabrice Legeai , Thuy Thao Vi Nguyen , Thomas Desvignes
7. International Workshop on the Biology of Fish Gametes, Sep 2019, Rennes, France. , pp.153-153, 2019
Conference poster hal-02282325v1
Image document

MiR-202 regulates female fecundity by controlling early follicle development in medaka ovary

Stéphanie Gay , Jérôme Bugeon , Amine Bouchareb , Laure Henry , Clara Delahaye
11. International Symposium on Reproductive Physiology of Fish, Jun 2018, Manaus, Brazil. 251 p., 2018, New frontiers in reproductive diversity in a changing environment
Conference poster hal-02437626v1

miR-202, un microARN clé pour le succès reproducteur des femelles chez le poisson médaka

Stéphanie Gay , Jérôme Bugeon , Amine Bouchareb , Laure Henry , Jérôme Montfort
Journées d'Animation Scientifique du département Phase (JAS Phase 2018), Apr 2018, Rennes, France. , 2018, Journées d’animation scientifiques du département Phase - Recueil des résumés
Conference poster hal-01771815v1

Effect of food restriction on reproductive performances and egg quality in the trout Oncorhynchus mykiss

Emilie Cardona , Jérôme Bugeon , Violette Thermes , Violaine Colson , Sandrine Skiba
6. International Workshop on the Biology of Fish Gametes, Sep 2017, Vodnany, Czech Republic. University of South Bohemia in Ceske Budejovice ; Faculty of Fisheries and Protection of Waters, 1st, 156 p., 2017, 6. International Workshop on the Biology of Fish Gametes
Conference poster hal-01595634v1

Identification of novel ovarian predominant miRNAs in medaka (Oryzias latipes)

Amine Bouchareb , Aurélie Le Cam , Jérôme Montfort , Stéphanie Gay , Thuy Thao Vi Nguyen
10. Meeting SifrARN, Mar 2016, Toulouse, France. , 2016, SifrARN 2016
Conference poster hal-02742939v1

Inactivation of miR202 after targeting its 3' genomic region using the CRISPR/Cas9 technology

Amine Bouchareb , Stéphanie Gay , Julien Bobe , Violette Thermes
10. Meeting SifrARN, Mar 2016, Toulouse, France. , 2016, SifrARN 2016
Conference poster hal-02742891v1

Analyse expressionnelle et fonctionnelle des microRNAs dans la physiologie du poisson (MicroFish)

Amélie Juanchich , Stéphanie Gay , Amine Bouchareb , Jean-Charles Gabillard , Yann Guiguen
Journées d’Animation des Crédits Incitatifs du Département de Physiologie Animale et Systèmes d’Elevage (JACI Phase 2016), Apr 2016, Tours, France. , 115 p., 2016, Crédits incitatifs financés entre 2011 et 2014
Conference poster hal-02741924v1

Identification of novel ovarian predominant miRNAs in medaka (Oryzias latipes)

Amine Bouchareb , Aurélie Le Cam , Jérôme Montfort , Stéphanie Gay , Thuy Thao Vi Nguyen
49. Annual Meeting of the Society for the Study of Reproduction, Jul 2016, San Diego, California, United States. , 405 p., 2016, SSR 2016 Systems Biology of Reproduction
Conference poster hal-02742929v1
Image document

High-resolution 3D imaging of whole zebrafish ovary

Maxence Frétaud , Stéphanie Gay , Jean-Jacques Lareyre , E. de Job , A. Jenett
9. European Zebrafish Meeting, Jun 2015, Oslo, Norway. , 2015, Zebrafish 2015
Conference poster hal-02742931v1

Existence de deux vagues distinctes de différenciation des ionocytes au sein de l'épithélium du sac vitellin embryonnaire chez le poisson medaka

Vincent Trayer , Nina Séjourné , Stéphanie Gay , Violette Thermes
5. Journées d'Animation Scientifique du département Phase (JAS Phase 2013), Oct 2013, Paris, France. , 2013
Conference poster hal-02807473v1

Studying the development of epidermal ionocytes in medaka: role of a cortisol receptor

Vincent Trayer , Isabelle Leguen , Jiun-Lin Horng , Pung-Pung Hwang , Patrick Prunet
2. Joint meeting of the British and French Societies for Developmental Biology, Sep 2011, Nice, France. 2011
Conference poster hal-02806336v1