Yann Audic

44
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Publications

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Transcriptome Meta-Analysis Uncovers Cell-Specific Regulatory Relationships in Embryonic, Juvenile, Adult, and Aged Mouse Lens Epithelium and Fibers

Matthieu Duot , Sarah Y. Coomson , Sanjaya K. Shrestha , M. V. Murali Krishna Nagulla , Yann Audic et al.
Investigative Ophthalmology & Visual Science, 2025, 66 (4), pp.42-42. ⟨10.1167/iovs.66.4.42⟩
Article dans une revue hal-05063645 v1
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Fully in vitro iterative construction of a 24 kb-long artificial DNA sequence to store digital information

Julien Leblanc , Olivier Boulle , Emeline Roux , Jacques Nicolas , Dominique Lavenier et al.
Biotechniques, 2024, 76 (5), pp.203-215. ⟨10.2144/btn-2023-0109⟩
Article dans une revue hal-04567229 v1
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Neuroinflammation as a cause of differential Müller cell regenerative responses to retinal injury

Diana García-García , Lorena Vidal-Gil , Karine Parain , Jingxian Lun , Yann Audic et al.
Science Advances , 2024, 10 (40), eadp7916. ⟨10.1126/sciadv.adp7916⟩
Article dans une revue hal-04723396 v1
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Gene-gene functional relationships in Alzheimer’s disease: CELF1 regulates KLC1 alternative splicing

Masataka Kikuchi , Justine Viet , Kenichi Nagata , Masahiro Sato , Geraldine David et al.
Biochemical and Biophysical Research Communications, 2024, 721, pp.150025. ⟨10.1016/j.bbrc.2024.150025⟩
Article dans une revue hal-04567328 v1
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High-Throughput Transcriptomics of Celf1 Conditional Knockout Lens Identifies Downstream Networks Linked to Cataract Pathology

Archana D. Siddam , Matthieu Duot , Sarah Y. Coomson , Deepti Anand , Sandeep Aryal et al.
Cells, 2023, 12 (7), ⟨10.3390/cells12071070⟩
Article dans une revue hal-04093501 v1

An integrative analysis using iCLIP-seq and RNA-Seq to identify genes post-transcriptionally regulated by the cataract-linked RNA-binding protein CELF1 in the lens

Matthieu Duot , Yann Audic , Agnès Méreau , Archana Siddam , Deepti Anand et al.
Investigative Ophthalmology & Visual Science, 2022, 63 (7), pp.647
Article dans une revue hal-03798672 v1
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The RNA-binding proteins CELF1 and ELAVL1 cooperatively control the alternative splicing of CD44

Géraldine David , David Reboutier , Stéphane Deschamps , Agnès Méreau , William Taylor et al.
Biochemical and Biophysical Research Communications, 2022, 626, pp.79-84. ⟨10.1016/j.bbrc.2022.07.073⟩
Article dans une revue hal-03757363 v1
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The Splicing Factor PTBP1 Represses TP63 γ Isoform Production in Squamous Cell Carcinoma

William Taylor , Stéphane Deschamps , David Reboutier , Luc Paillard , Agnès Méreau et al.
Cancer Research Communications, 2022, 2 (12), pp.1669-1683. ⟨10.1158/2767-9764.CRC-22-0350⟩
Article dans une revue hal-04100176 v1
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DHX15-independent roles for TFIP11 in U6 snRNA modification, U4/U6.U5 tri-snRNP assembly and pre-mRNA splicing fidelity

Amandine Duchemin , Tina O’grady , Sarah Hanache , Agnès Méreau , Marc Thiry et al.
Nature Communications, 2021, 12 (1), pp.6648. ⟨10.1038/s41467-021-26932-2⟩
Article dans une revue hal-03442150 v1
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Xenopus Resources Transgenic, Inbred and Mutant Animals, Training Opportunities, and Web-Based Support

Marko Horb , Marcin Wlizia , Anita Abu-Daya , Sean Mcnamara , Dominika Gajdasik et al.
Frontiers in Physiology, 2019, 10, pp.387. ⟨10.3389/fphys.2019.00387⟩
Article dans une revue hal-02156285 v1
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RNA-Seq Analysis of an Antisense Sequence Optimized for Exon Skipping in Duchenne Patients Reveals No Off-Target Effect

Claire Domenger , Marine Allais , Virginie François , Adrien Leger , Emilie Lecomte et al.
Molecular Therapy - Nucleic Acids, 2018, 10, pp.277 - 291. ⟨10.1016/j.omtn.2017.12.008⟩
Article dans une revue inserm-01734756 v1
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Robust identification of Ptbp1-dependent splicing events by a junction-centric approach in Xenopus laevis

Maud Noiret , Agnès Méreau , Gaelle Angrand , Marion Bervas , Carole Gautier-Courteille et al.
Developmental Biology, 2017, 426 (2), pp.449-459. ⟨10.1016/j.ydbio.2016.08.021⟩
Article dans une revue hal-01533247 v1

Identification of CELF1 RNA targets by CLIP-seq in human HeLa cells

Olivier Le Tonquèze , Bernhard Gschloessl , Vincent Legagneux , Luc Paillard , Yann Audic
Genomics Data, 2016, 8, pp.97-103. ⟨10.1016/j.gdata.2016.04.009⟩
Article dans une revue hal-01304359 v1
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Ptbp1 and Exosc9 knockdowns trigger skin stability defects through different pathways

Maud Noiret , Stéphanie Mottier , Gaelle Angrand , Carole Gautier-Courteille , Hubert Lerivray et al.
Developmental Biology, 2016, 409 (2), pp.489-501. ⟨10.1016/j.ydbio.2015.11.002⟩
Article dans une revue hal-01225487 v1

A post-transcriptional mechanism that controls ptbp1 abundance in the Xenopus epidermis.

Agnès Méreau , Vincent Anquetil , Hubert Lerivray , Justine Viet , Claire Schirmer et al.
Molecular and Cellular Biology, 2015, 35 (4), pp.758-68. ⟨10.1128/MCB.01040-14⟩
Article dans une revue hal-01117168 v1

zfp36 expression delineates both myeloid cells and cells localized to the fusing neural folds in Xenopus tropicalis

Maud Noiret , Serge Hardy , Yann Audic
International Journal of Developmental Biology, 2014, 58 (10-12), pp.751--755. ⟨10.1387/ijdb.140264ya⟩
Article dans une revue hal-01313754 v1

CLIP-seq of eIF4AIII reveals transcriptome-wide mapping of the human exon junction complex.

Jérôme Saulière , Valentine Murigneux , Zhen Wang , Emélie Marquenet , Isabelle Barbosa et al.
Nature Structural and Molecular Biology, 2012, 19 (11), pp.1124-31. ⟨10.1038/nsmb.2420⟩
Article dans une revue istex hal-00982626 v1

Expression analysis of the polypyrimidine tract binding protein (PTBP1) and its paralogs PTBP2 and PTBP3 during Xenopus tropicalis embryogenesis.

Maud Noiret , Yann Audic , Serge Hardy
International Journal of Developmental Biology, 2012, 56 (9), pp.747-53. ⟨10.1387/ijdb.120017sh⟩
Article dans une revue inserm-00870920 v1
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Inactivation of the Celf1 gene that encodes an RNA-binding protein delays the first wave of spermatogenesis in mice.

Marie Cibois , Gaëlla Boulanger , Yann Audic , Luc Paillard , Carole Gautier-Courteille
PLoS ONE, 2012, 7 (10), pp.e46337. ⟨10.1371/journal.pone.0046337⟩
Article dans une revue inserm-00869961 v1

Chromosome wide analysis of CUGBP1 binding sites identifies the tetraspanin CD9 mRNA as a target for CUGBP1-mediated down-regulation.

Olivier Le Tonquèze , Bernhard Gschloessl , Allen Namanda-Vanderbeken , Vincent Legagneux , Luc Paillard et al.
Biochemical and Biophysical Research Communications, 2010, 394 (4), pp.884-9. ⟨10.1016/j.bbrc.2010.03.020⟩
Article dans une revue istex inserm-00466153 v1
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Reverse genetics in eukaryotes.

Serge Hardy , Vincent Legagneux , Yann Audic , Luc Paillard
Biology of the Cell, 2010, 102 (10), pp.561-80. ⟨10.1042/BC20100038⟩
Article dans une revue inserm-00511685 v1
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Identification of CUG-BP1/EDEN-BP target mRNAs in Xenopus tropicalis.

Antoine Graindorge , Olivier Le Tonquèze , Raphaël Thuret , Nicolas Pollet , Howard Beverley Osborne et al.
Nucleic Acids Research, 2008, 36 (6), pp.1861-70. ⟨10.1093/nar/gkn031⟩
Article dans une revue hal-00277442 v1

ElrA and AUF1 differentially bind cyclin B2 mRNA.

Xun Guo , Francoise Gourronc , Yann Audic , Gillian Lyons-Levy , Therese Mitchell et al.
Biochemical and Biophysical Research Communications, 2008, 377 (2), pp.653-7. ⟨10.1016/j.bbrc.2008.10.029⟩
Article dans une revue inserm-00353157 v1
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Identification of post-transcriptionally regulated Xenopus tropicalis maternal mRNAs by microarray.

Antoine Graindorge , Raphaël Thuret , Nicolas Pollet , Howard Beverley Osborne , Yann Audic
Nucleic Acids Research, 2006, 34 (3), pp.986-95. ⟨10.1093/nar/gkj492⟩
Article dans une revue hal-00289723 v1
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CUG-BP1/CELF1 requires UGU-rich sequences for high-affinity binding

Julien Marquis , Luc Paillard , Yann Audic , Bertrand Cosson , Olivier Danos et al.
Biochemical Journal, 2006, 400 (2), pp.291-301. ⟨10.1042/BJ20060490⟩
Article dans une revue hal-00478569 v1
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CUG-BP1/CELF1 requires UGU-rich sequences for high-affinity binding.

Julien Marquis , Luc Paillard , Yann Audic , Bertrand Cosson , Olivier Danos et al.
Biochemical Journal, 2006, 400 (2), pp.291-301. ⟨10.1042/BJ20060490⟩
Article dans une revue inserm-00292923 v1
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Post-transcriptional regulation in Xenopus embryos: role and targets of EDEN-BP.

Howard Beverley Osborne , Carole Gautier-Courteille , Antoine Graindorge , Carine Barreau , Yann Audic et al.
Biochemical Society Transactions, 2005, 33 (Pt 6), pp.1541-3. ⟨10.1042/BST20051541⟩
Article dans une revue inserm-00292938 v1
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EDEN-BP-dependent post-transcriptional regulation of gene expression in Xenopus somitic segmentation.

Carole Gautier-Courteille , Christophe Le Clainche , Carine Barreau , Yann Audic , Antoine Graindorge et al.
Development (Cambridge, England), 2004, 131 (24), pp.6107-17. ⟨10.1242/dev.01528⟩
Article dans une revue inserm-00292940 v1

Post-transcriptional regulation in cancer

Yann Audic , Rebecca S Hartley
Biology of the Cell, 2004, 96 (7), pp.479-498. ⟨10.1016/j.biolcel.2004.05.002⟩
Article dans une revue hal-02323363 v1

An analysis of the sequence requirements of EDEN-BP for specific RNA binding.

Sylvie Bonnet-Corven , Yann Audic , Francis Omilli , Howard Beverley Osborne
Nucleic Acids Research, 2002, 30 (21), pp.4667-74. ⟨10.1093/nar/gkf586⟩
Article dans une revue inserm-02325407 v1
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An analysis of the sequence requirements of EDEN-BP for specific RNA binding.

Sylvie Bonnet-Corven , Yann Audic , Francis Omilli , Howard Beverley Osborne
Nucleic Acids Research, 2002, 30 (21), pp.4667-74. ⟨10.1093/nar/gkf586⟩
Article dans une revue inserm-00292945 v1

Zygotic control of maternal cyclin A1 translation and mRNA stability

Yann Audic , Mark Garbrecht , Brian Fritz , Michael Sheets , Rebecca S Hartley
Developmental Dynamics, 2002, 225 (4), pp.511-521. ⟨10.1002/dvdy.10191⟩
Article dans une revue hal-02325355 v1

Cyclin E morpholino delays embryogenesis in Xenopus.

Yann Audic , B Boyle , M Slevin , Rebecca S Hartley
Genesis - The Journal of Genetics and Development, 2001, 30 (3), pp.107-9
Article dans une revue hal-02325458 v1

Zygotic Regulation of Maternal Cyclin A1 and B2 mRNAs

Yann Audic , C. Anderson , R. Bhatty , Rebecca S Hartley
Molecular and Cellular Biology, 2001, 21 (5), pp.1662-1671. ⟨10.1128/MCB.21.5.1662-1671.2001⟩
Article dans une revue hal-02325473 v1

Embryo Deadenylation Element-Dependent Deadenylation Is Enhanced by a cis Element Containing AUU Repeats

Yann Audic , Francis Omilli , H. Beverley Osborne
Molecular and Cellular Biology, 1998, 18 (12), pp.6879-6884. ⟨10.1128/mcb.18.12.6879⟩
Article dans une revue hal-02325486 v1

Design and use of easily made RNA size markers.

Yann Audic , Francis Omilli , Howard Beverley Osborne , Laetieia Landais
Biotechniques, 1997, 23 (4), pp.612-4, 616
Article dans une revue hal-00293007 v1

Postfertilization deadenylation of mRNAs in Xenopus laevis embryos is sufficient to cause their degradation at the blastula stage.

Y. Audic , F. Omilli , H. B. Osborne
Molecular and Cellular Biology, 1997, 17 (1), pp.209-18
Article dans une revue hal-00315978 v1

Identification of alternative spliced RNA targets of the cataract-linked RNA-binding protein CELF1: use of an multi-omics approach based an iCLIP-seq and RNA-seq

Matthieu Duot , Carole Gautier-Courteille , Yann Audic , Agnès Méreau , Archana Siddam et al.
Annual Meeting of the Association-for-Research-in-Vision-and-Ophthalmology (ARVO), Apr 2023, New Orleans, United States. pp.1946
Communication dans un congrès hal-04286997 v1

Identification of Regulatory Binding Sites on mRNA Using in Vivo Derived Informations and SVMs

Carmen Maria Livi , Luc Paillard , Enrico Blanzieri , Yann Audic
6th International Conference on Practical Applications of Computational Biology & Bioinformatics, Mar 2012, Salamanca, Spain. pp.33-41, ⟨10.1007/978-3-642-28839-5_4⟩
Communication dans un congrès istex hal-01117163 v1