Yannick COLIN

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Publications

Image document

Soil Carbon Dynamics Reshaped by Ancient Carbon Quantification

Yoann Copard , Christine Hatté , Lauric Cécillon , Yannick Colin , Pierre Barré et al.
Global Change Biology, 2025, 31 (9), ⟨10.1111/gcb.70482⟩
Article dans une revue hal-05272764 v1
Image document

The Bacterial Antimonite Oxidase AnoA : Unexpected Diversity and Environmental Widespread Occurrence

Claire da Costa , Thierry Berthe , Titouan Dehaies , Sophie Ayrault , Yannick Colin
Environmental Microbiology, 2025, 27 (3), pp.e70069. ⟨10.1111/1462-2920.70069⟩
Article dans une revue hal-04986528 v1
Image document

Standing at the crossroads: Path analysis highlights potential levers to preserve fungal richness when shifting tree species for forest adaptation

Vincent Moulin , Ludovic Henneron , Robinson Ribemont , Yannick Colin , Sylvaine Buquet et al.
Forest Ecology and Management, 2025, 589, ⟨10.1016/j.foreco.2025.122772⟩
Article dans une revue hal-05267603 v1

Ecotoxicological risk assessment using a multi-scale approach in the estuarine copepod Eurytemora affinis applied to an ecdysone agonist

Caroline Arcanjo , Yannick Colin , Nathalie Giusti-Petrucciani , Aurélie Duflot , Jean-Luc Ravanat et al.
Ecotoxicology and Environmental Safety, 2025, 304, pp.119081. ⟨10.1016/j.ecoenv.2025.119081⟩
Article dans une revue hal-05292809 v1
Image document

A cryptically diverse microbial community drives organic matter decomposition in forests

François Maillard , Yannick Colin , Chloé Viotti , Marc Buée , Ivano Brunner et al.
Applied Soil Ecology, 2024, 193 (1), pp.105148. ⟨10.1016/j.apsoil.2023.105148⟩
Article dans une revue hal-04231371 v1
Image document

Decoupled responses of the copepod Eurytemora affinis transcriptome and its microbiota to dissolved copper exposure

Yannick Colin , Caroline Arcanjo , Claire da Costa , Anne-Laure Vivant , Gauthier Trémolet et al.
Aquatic Toxicology, 2023, 259, pp.106546. ⟨10.1016/j.aquatox.2023.106546⟩
Article dans une revue hal-04089063 v1
Image document

Shifts in sediment bacterial communities reflect changes in depositional environments in a fluviatile context

Claire da Costa , Yannick Colin , Maxime Debret , Yoann Copard , Thomas Gardes et al.
Science of the Total Environment, 2023, 885, pp.163890. ⟨10.1016/j.scitotenv.2023.163890⟩
Article dans une revue hal-04087295 v1
Image document

Dysbiosis of fish gut microbiota is associated with helminths parasitism rather than exposure to PAHs at environmentally relevant concentrations

Yannick Colin , Noëlie Molbert , Thierry Berthe , Simon Agostini , Fabrice Alliot et al.
Scientific Reports, 2022, 12 (1), pp.11084. ⟨10.1038/s41598-022-15010-2⟩
Article dans une revue hal-03710941 v1
Image document

Forest plant cover and mineral type determine the diversity and composition of mineral-colonizing fungal communities

Y. Colin , M.-P. Turpault , L. Fauchery , Marc Buée , Stéphane Uroz
European Journal of Soil Biology, 2021, 105, pp.103334. ⟨10.1016/j.ejsobi.2021.103334⟩
Article dans une revue hal-03336939 v1

Urbanization constrains skin bacterial phylogenetic diversity in wild fish populations and correlates with the proliferation of aeromonads

Yannick Colin , Thierry Berthe , Noëlie Molbert , Elodie Guigon , Anne-Laure Vivant et al.
Microbial ecology, 2021, 82 (2), pp.523-536. ⟨10.1007/s00248-020-01650-2⟩
Article dans une revue hal-03614770 v1
Image document

Coalescence of bacterial groups originating from urban runoffs and artificial infiltration systems among aquifer microbiomes

Yannick Colin , Rayan Bouchali , Laurence Marjolet , Romain Marti , Florian Vautrin et al.
Hydrology and Earth System Sciences, 2020, 24 (9), pp.4257-4273. ⟨10.5194/hess-24-4257-2020⟩
Article dans une revue hal-02926778 v1

Successional trajectories of soil bacterial communities in mine tailings: The role of plant functional traits

Yannick Colin , Marta Goberna , Miguel Verdú , Jose Navarro-Cano
Journal of Environmental Management, 2019, 241, pp.284-292. ⟨10.1016/j.jenvman.2019.04.023⟩
Article dans une revue hal-02468207 v1

Incorporating phylogenetic metrics to microbial co‐occurrence networks based on amplicon sequences to discern community assembly processes

Marta Goberna , Alicia Montesinos‐navarro , Alfonso Valiente‐banuet , Yannick Colin , Alicia Gómez‐fernández et al.
Molecular Ecology Resources, 2019, 19 (6), pp.1552-1564. ⟨10.1111/1755-0998.13079⟩
Article dans une revue hal-02467598 v1

Impact of soil pedogenesis on the diversity and composition of fungal communities across the California soil chronosequence of Mendocino

P E Courty , Marc Buée , J J T Tech , D Brulé , Yannick Colin et al.
Mycorrhiza, 2018, 28 (4), pp.343-356. ⟨10.1007/s00572-018-0829-9⟩
Article dans une revue hal-01815206 v1

Biosensor for screening bacterial mercury methylation: example within the Desulfobulbaceae

Yannick Colin , Jérôme Gury , Mathilde Monperrus , Sophie Gentès , Paola Ayala Borda et al.
Research in Microbiology, 2018, 169 (1), pp.44-51. ⟨10.1016/j.resmic.2017.09.005⟩
Article dans une revue hal-01980756 v1

Reprint of: Contribution of enrichments and resampling for sulfate reducing bacteria diversity assessment by high-throughput cultivation

Yannick Colin , Maria Soledad Goni-Urriza , Pierre Caumette , Remy Guyoneaud
Journal of Microbiological Methods, 2017, 138, pp.100-105. ⟨10.1016/j.mimet.2017.05.015⟩
Article dans une revue hal-01563514 v1
Image document

Mineral types and tree species determine the functional and taxonomic structures of forest soil bacterial communities

Yannick Colin , Océane Nicolitch-Café , Marie-Pierre M.-P. Turpault , Stéphane Uroz
Applied and Environmental Microbiology, 2017, 83 (5), pp.e02684-16. ⟨10.1128/AEM.02684-16⟩
Article dans une revue hal-01548673 v1

Bacterial periphytic communities related to mercury methylation within aquatic plant roots from a temperate freshwater lake (South-Western France)

Sophie Gentès , Julie Taupiac , Yannick Colin , Jean-Marc André , Remy Guyoneaud
Environmental Science and Pollution Research, 2017, 24 (23), pp.19223-19233. ⟨10.1007/s11356-017-9597-x⟩
Article dans une revue hal-01702067 v1

Tree roots select specific bacterial communities in the subsurface critical zone

Océane Nicolitch , Yannick Colin , Marie-Pierre M.-P. Turpault , Laure Fauchery , Stéphane Uroz
Soil Biology and Biochemistry, 2017, 115, pp.109-123. ⟨10.1016/j.soilbio.2017.07.003⟩
Article dans une revue hal-01683170 v1

Taxonomic and functional shifts in the beech rhizosphere microbiome across a natural soil toposequence

Yannick Colin , Océane Nicolitch-Café , J. D. van Nostrand , J Z Zhou , Marie-Pierre M.-P. Turpault et al.
Scientific Reports, 2017, 7 (1), pp.1-17. ⟨10.1038/s41598-017-07639-1⟩
Article dans une revue (article de synthèse) hal-01611454 v1
Image document

Distribution of Sulfate-Reducing Communities from Estuarine to Marine Bay Waters

Yannick Colin , Marisol Goñi , C. Gassie , E. Carlier , Mathilde Monperrus et al.
Microbial ecology, 2017, 73 (1), pp.39-49. ⟨10.1007/s00248-016-0842-5⟩
Article dans une revue hal-01499135 v1

Soil type determines the distribution of nutrient mobilizing bacterial communities in the rhizosphere of beech trees

Océane Nicolitch-Café , Yannick Colin , Marie-Pierre M.-P. Turpault , Stéphane Uroz
Soil Biology and Biochemistry, 2016, 103, pp.429-445. ⟨10.1016/j.soilbio.2016.09.018⟩
Article dans une revue hal-01490771 v1

Mineral Type and Solution Chemistry Affect the Structure and Composition of Actively Growing Bacterial Communities as Revealed by Bromodeoxyuridine Immunocapture and 16S rRNA Pyrosequencing

L. Kelly , Yannick Colin , M-P. Turpault , Stephane Uroz
Microbial ecology, 2016, 72 (2), pp.428-442. ⟨10.1007/s00248-016-0774-0⟩
Article dans une revue hal-02916112 v1

Contribution of enrichments and resampling for sulfate reducing bacteria diversity assessment by high-throughput cultivation

Yannick Colin , Marisol Goñi , Pierre Caumette , Remy Guyoneaud
Journal of Microbiological Methods, 2015, 110, pp.92-97. ⟨10.1016/j.mimet.2015.01.003⟩
Article dans une revue istex hal-01654727 v1

Microbial diversity in Los Azufres geothermal field (Michoacán, Mexico) and isolation of representative sulfate and sulfur reducers

E.M.S. Brito , N. Villegas-Negrete , I.A. Sotelo-González , C.A. Caretta , Marisol Goñi et al.
Extremophiles, 2014, 18 (2), pp.385-398. ⟨10.1007/s00792-013-0624-7⟩
Article dans une revue hal-01555841 v1

Combination of high throughput cultivation and dsrA sequencing for assessment of sulfate-reducing bacteria diversity in sediments

Yannick Colin , Marisol Goñi , Pierre Caumette , Remy Guyoneaud
FEMS Microbiology Ecology, 2013, 83 (1), pp.26-37. ⟨10.1111/j.1574-6941.2012.01452.x⟩
Article dans une revue hal-01546606 v1