Yves Gibon

343

Documents

Publications

Insights into physiological responses of different grapevine varieties to Flavescence Dorée infection: an integrated approach

Loreen Larroquet , Enora Bodin , Cédric Cassan , Camille Jollard , Marie-Cecile Dufour et al.

6. European Bois Noir workshop and 1st International Pro-AECOGY conference, UMR-1332 Fruit Biology and Pathology, University of Bordeaux and INRAE, May 2024, Bordeaux (France), France

Communication dans un congrès hal-04650385v1

Comparative constraint-based modelling of fruit development across species highlights nitrogen metabolism in the growth- defence trade-off

Beaumont Chloé , Cassan Cédric , Sylvain Prigent , Hilbert-Masson Ghislaine , Renaud Christel et al.

JOBIM 2024 - Journées Ouvertes en Biologie, Informatique et Mathématiques, Jun 2024, Toulouse, France

Communication dans un congrès hal-04677435v1

Unraveling Brassica napus leaf metabolic diversity: leveraging machine learning for agronomic trait prediction

Millena C. Barros Santos , Sylvain Prigent , Yves Gibon , Anne Laperche , Alain Bouchereau et al.

16émes journées scientifiques du RFMF, 2024, Saint Malo (FR), France

Communication dans un congrès hal-05412488v1

Combining phenotypic, metabolome and proteome data to study maize response to a mild nitrogen deficit

Maria Urrutia , Melisande Blein-Nicolas , Olivier Fernandez , Stéphane Bernillon , Mickael Maucourt et al.

Journées du Protéome Vert, Jun 2022, Gif-sur-Yette, France

Communication dans un congrès hal-03878405v1

Modeling berry growth and quality formation at multiple levels

Zhanwu Dai , Jinliang Chen , Junqi Zhu , Yongjian Wang , Michel Génard et al.

XIth International Symposium on Grapevine Physiology and Biotechnology, Oct 2021, Stellenbosch, South Africa

Communication dans un congrès hal-04730090v1

Effet de la sécheresse sur l'expression des symptômes foliaires de l'esca

Giovanni Bortolami , Gregory A. Gambetta , Cédric Cassan , Silvina Dayer , Elena Farolfi et al.

Journées Nationales des maladies du bois de la vigne, Nov 2021, Reims, France

Communication dans un congrès hal-03582553v1

An integrated fruit model toolkit: combining fruit biophysical processes with central carbon metabolism

J.L. Chen , Bertrand Beauvoit , Sophie Colombie , Léa Roch , Coffi Belmys Cakpo et al.

Symposium on Advanced Technologies and Management for Innovative Greenhouses: GreenSys2019, Jun 2019, Angers, France. pp.401-410, ⟨10.17660/ActaHortic.2020.1296.52⟩

Communication dans un congrès hal-03125090v1

An overview of NMR applications in metabolite profiling of small molecules for plant metabolism studies

Catherine Deborde , Daniel Jacob , Jean-Xavier J.-X. Fontaine , R. Molinie , Léa Roch et al.

2. International Plant Spectroscopy Conference (IPSC), Mar 2019, Berlin, Germany

Communication dans un congrès hal-02786819v1

Using metabolomic data to predict Maize yield

Sylvain Prigent , Olivier Fernandez , Stéphane Bernillon , Pierre Pétriacq , Annick Moing et al.

JOBIM 2019, Jul 2019, Nantes, France. pp.151

Communication dans un congrès hal-02565229v1

Dissecting G×E and QTL×E of maize yield in contrasting scenarios of light, heat and water deficit

Emilie J. Millet , Willem Kruijer , Santiago Alvarez Prado , Llorenç Cabrera-Bosquet , Aude Coupel-Ledru et al.

24. Eucarpia Maize and Sorghum Conference, TUM School of Life Sciences Weihenstephan, Oct 2019, Freising, Germany

Communication dans un congrès hal-04154261v1

Dynamics of bud metabolites during dormancy in sweet cherry genotypes with contrasted chilling requirements

Rémi Beauvieux , Bénédicte Wenden , Patricia Ballias , Hélène Christmann , Yves Gibon et al.

8. International Cherry Symposium, Jun 2017, Yamagata, Japan. ⟨10.17660/ActaHortic.2019.1235.56⟩

Communication dans un congrès hal-02737043v1

Peptide filtering differently affects the performances of XIC-based quantifcation methods

Melisande Blein-Nicolas , Isma Belouah , Thierry Balliau , Yves Gibon , Michel Zivy et al.

Journées Protéome Vert, Apr 2018, Paris, France

Communication dans un congrès hal-03879922v1

Integrative and predictive biology outside the plant: linking computational tools to fleshy fruit systems

Cecile Cabasson , Sophie Colombie , Bertrand Beauvoit , Christine Nazaret , Camille Benard et al.

Colloque Biologie synthétique et systémique, BioSynSys, Jun 2016, Bordeaux, France

Communication dans un congrès hal-02739719v1

Integration of “omics” data provides tools for understanding effects of variable nitrogen (N) and sulphur (S) supply during wheat grain development

Titouan Bonnot , Emmanuelle Bancel , David Alvarez , Mireille Dardevet , Julie Boudet et al.

COST FA1306 meeting, Feb 2016, Versailles, France

Communication dans un congrès hal-02340464v1

Is failure of reproductive development under water or heat stress due to C shortage ?

Bertrand Muller , Nathalie Luchaire , Vincent Oury , Francois Tardieu , Yves Gibon et al.

SEB Symposium, Jul 2016, Brighton, United Kingdom

Communication dans un congrès hal-02740765v1

Flux balance modelling in developing tomato fruit: the respiration climacteric as an emergent property

Sophie S. Colombie , Bertrand Beauvoit , Christine Nazaret , Camille Bénard , Cécile Cabasson et al.

10. journées scientifiques du Réseau Francophone de Métabolomique et Fluxomique RFMF 2016, Réseau Francophone de Métabolomique et Fluxomique (RFMF). FRA., May 2016, Montpellier, France

Communication dans un congrès hal-02740471v1

Leaf marker metabolites for low nitrogen stress in maize

Maria Urrutia Rosauro , Stéphane Bernillon , M. Maucourt , Catherine Deborde , Daniel Jacob et al.

Plant Biology Europe EPSO/FESPB 2016, Jun 2016, Prague, Czech Republic

Communication dans un congrès hal-01605806v1

Consequences of high temperatures and drought on peach fruit production strongly depends on their period of occurence

Fatima Adra , Gilles Vercambre , Daniel Plénet , Benedicte Bakan , Agathe Noblet et al.

Climate-Smart Agriculture 2015 : Global Science Conference, Mar 2015, Montpellier, France

Communication dans un congrès hal-01603456v1

Investigating plant performance using metabolic phenotyping

Yves Gibon

COST FA 1306: The quest for tolerant varieties - Phenotyping at plant and cellular level, Jun 2015, IPK Gatersleben, Germany

Communication dans un congrès hal-01603501v1

Using metabolomic approaches and modelling of central metabolic to study fleshy fruit quality

Sophie S. Colombie , Bertrand Beauvoit , Dominique D. Rolin , Stéphane Bernillon , Camille Bénard et al.

1. International Symposium on Metabolomics in Mexico, Jun 2015, Guadalajara, Mexico. 2 p

Communication dans un congrès hal-02800371v1

Investigating drought resistance using metabolic phenotyping

Yves Gibon

DROPS – EUCARPIA Conference : Recent progress in drought tolerance from genetics to modelling, Jun 2015, Montpellier, France

Communication dans un congrès hal-01603500v1

Cellular and subcellular metabolomics reveal changes during tomato leaf development

Clémence de Jaham , Benjamin Thiombiano , Camille Bénard , A.P. Alonso , J.C. Cocuron et al.

9. Journées scientifiques du RFMF, Réseau Francophone de Métabolomique et Fluxomique (RFMF). FRA., Jun 2015, Lille, France

Communication dans un congrès hal-02740382v1

High or low fructose? Consequences for sugar metabolism in peach fruit

Elsa Desnoues , Yves Y. Gibon , Valentina Baldazzi , Veronique Signoret , Michel M. Génard et al.

8. ISHS International Peach Symposium, Jun 2013, Matera, Italy. 1 p

Communication dans un congrès hal-02740591v1

Role of plant carbon status in yield components responses to elevated temperatures in microvine

Nathalie Luchaire , Markus Rienth , Charles Romieu , Laurent Torregrosa , Yves Gibon et al.

19. Journées Internationales de Viticulture GiESCO, May 2015, Gruissan, France. 810 p

Communication dans un congrès hal-01506406v1

Fruit systems biology

Yves Gibon

Tsukuba Global Science Week 2015, Sep 2015, Tsukuba, Japan

Communication dans un congrès hal-01603502v1

Fruit systems biology

Yves Gibon

IPMB 2015 - 11. International Congress of Plant Molecular Biology, Oct 2015, Igauçu Cataratas, Brazil

Communication dans un congrès hal-01603499v1

Dynamique de métabolites en relation avec l’état de dormance des bougeons floraux chez le cerisier doux

Rémi Beauvieux , Bénédicte B. Wenden , Yves Y. Gibon , Elisabeth Dirlewanger

Colloque Francophone Phénologie, Nov 2015, Clermont-Ferrand, France

Communication dans un congrès hal-02743152v1

Genomic studies on a highly complex trait in Sweet Cherry: tolerance to rain-induced fruit

José Quero-Garcia , José Antonio Campoy-Corbalan , Guillaume Lalanne-Tisne , Jacques Joly , Yves Y. Gibon et al.

Plant and Animal Genome XXIII, Jan 2015, San Diego, United States

Communication dans un congrès hal-02742464v1

Using developmental and diurnal compositional changes of tomato to study metabolism

Camille Bénard , Stéphane Bernillon , Benoit Biais , Sonia Osorio-Algar , Mickael M. Maucourt et al.

8. Journées Scientifiques du Réseau Français de Métabolomique et Fluxomique RFMF, May 2014, Lyon, France. 1 p

Communication dans un congrès hal-02793195v1

Genetic architecture of quantitative responses to Turnip Mosaic Virus (TuMV) infection trait loci in Arabidopsis thaliana through evaluation of biomass, viral accumulation, and metabolic profiles

Anais Graveleau , Bernadette Rubio , Zofia Nehr , Patrick Cosson , Mélodie Caballero et al.

Réseau résistances durables, 2014, Lauret, France

Communication dans un congrès hal-02798441v1

Modelling fluxes and metabolic network analysis of developing tomato fruits

Sophie S. Colombie , Bertrand Beauvoit , Christine Nazaret , Martine Dieuaide Noubhani , Jean-Pierre Mazat et al.

Bordeaux Computational Biology and Bioinformatics, Nov 2014, Bordeaux, France

Communication dans un congrès hal-02796388v1

Fruit quality in sweet cherry: from QTLs to candidate genes

Elisabeth Dirlewanger , José Antonio Campoy-Corbalan , Loick Le Dantec , Jacques Joly , Lydie Fouilhaux et al.

7. International Rosaceae Genomics Conference, Jun 2014, Seattle, United States

Communication dans un congrès hal-02793254v1

La métabolomique : un outil de la génomique fonctionnelle au service de la biologie des systèmes

Dominique D. Rolin , Bertrand Beauvoit , Stéphane Bernillon , Camille Bénard , Patricia Ballias et al.

8e Congrès Jeunes Chercheurs de la SFBV, Société Française de Biologie Végétale (SFBV). FRA., Jun 2014, Tours, France. 1 p

Communication dans un congrès hal-02801036v1

Association mapping fo quantitative responses to Turnip Mosaic Virus (TuMV) infection trait loci in Arabidopsis thaliana through evaluation of biomass, viral accumulation, and metabolic profiles

Anais Graveleau , Bernadette Rubio , Zofia Nehr , Patrick Cosson , Mélodie Caballero et al.

GDR Génétique Quantitative dans les Populations Naturelles, Oct 2015, Toulouse, France

Communication dans un congrès hal-01601534v1

Metabolic Phenotyping, in Quest of Serendipity

Yves Y. Gibon

Journée Scientifique BAP-INRA, Apr 2014, Pont Royal, France

Communication dans un congrès hal-02792057v1

Fruity data, juicy concepts

Yves Y. Gibon

Institute's days at the MPIMP-Golm, Jun 2013, Potsdam, Germany

Communication dans un congrès hal-02805469v1

Old school analytical biochemistry in the era of systems biology

Yves Y. Gibon

Accliphot, Oct 2013, Zurich, Switzerland

Communication dans un congrès hal-02802824v1

Diurnal compositional changes of tomato fruit and leaf

Camille Benard , Stéphane Bernillon , Sonia Osorio-Algar , Mickael M. Maucourt , Benoit Biais et al.

Metabolomics 2013, Jul 2013, Glasgow, United Kingdom. 1 p

Communication dans un congrès hal-02803658v1

Association mapping of quantitative responses to Turnip mosaic virus (TuMV) infection trait loci in Arabidopsis thaliana through evaluation of biomass, viral accumulation, and metabolic profiles

Anais Graveleau , Patrick Cosson , Mélodie Caballero , Frederic Revers , Yves Y. Gibon et al.

14. Rencontres de Virologie Végétale, Jan 2013, Aussois, France. p. 12

Communication dans un congrès hal-02811083v1

Réseaux métaboliques

Yves Y. Gibon

Colloque AllEnvi - "Modélisation multi-échelle des plantes", Nov 2013, Lyon, France

Communication dans un congrès hal-02802439v1

Combining systems biology, genome resequencing and MAGIC population to decipher the genetic variation of tomato fruit quality

Laura Pascual , Jiaxin Xu , Nelly Desplat , Yves Y. Gibon , Annick Moing et al.

10. Solanaceae conference (SOL 2013), Oct 2013, Beijing, China

Communication dans un congrès hal-02750138v1

Impact of the tomato fruit temperature on its growth and composition

Hélène Gautier , Nadia Bertin , Valentina Baldazzi , Béatrice Brunel , Jean-Claude L'Hôtel et al.

2. Symposium on Horticulture in Europe, Jul 2012, Angers, France. 1 p

Communication dans un congrès hal-02747573v1

Metabolomics data integration in tomato plant-fruit systems biology

Camille Bénard , Dominique D. Rolin , Stéphane Bernillon , Mickael M. Maucourt , Benoit Biais et al.

Metabolomics-2012, International Conference and Exhibition on Metabolomics & Systems Biology, Feb 2012, San Francisco, United States

Communication dans un congrès hal-02803433v1

A multi-Ievel omic approach of tomato fruit quality

Jiaxin Xu , Laura Pascual , Nelly Desplat , Mireille Faurobert , Yves Y. Gibon et al.

2. Symposium on Horticulture in Europe, Jul 2012, Angers, France

Communication dans un congrès hal-02748459v1

Compositional changes of tomato seeds during development and maturation

Cécile Cabasson , Ousmane Harouna Kore , Catherine Deborde , Mickael M. Maucourt , Annick Moing et al.

6. Journées Scientifiques du Réseau Français de Métabolomique et Fluxomique (RFMF), May 2012, Nantes, France. p. 60

Communication dans un congrès hal-02807332v1

Ozone-induced detoxification processes in three populus genotypes: metabolomic and molecular approaches

Jennifer Dumont , M. Keski-Saari , M. Keinanen , S. Kontunen Soppela , David Cohen et al.

Joint International Conference “Biological Reactions of Forests to Climate Change and Air Pollution”, International Union of Forest Research Organisations (IUFRO). AUT., May 2012, Kaunas, Lithuania

Communication dans un congrès hal-02745486v1

Genetic diversity, inheritance and integration of multi-level omic data in tomato fruit

Jiaxin Xu , Laura Pascual-Banuls , Nelly Desplat , Jean-Paul Bouchet , Yves Y. Gibon et al.

20. Plant and Animal Genome, Jan 2012, San Diego, United States. pp.W643

Communication dans un congrès hal-02810053v1

Régulation de la synthèse des protéines de réserve du grain de blé en réponse à la disponibilité en azote et soufre

Anne A. Plessis , Zhanwu Z. Dai , Nathalie N. Duchateau , Mireille M. Dardevet , Duyên D. Prodhomme et al.

Congrès Grains, Oct 2011, Nantes, France

Communication dans un congrès hal-00964176v1

Tools and applications in plant metabolomics at Bordeaux Metabolome Fluxome Facility (PMFB; http://www.bordeaux.inra.fr/umr619/NMR.htm)

Catherine Deborde , Stéphane Bernillon , Mickael M. Maucourt , Cécile Cabasson , Benoit Biais et al.

5. Journées scientifiques du Réseau Français de Métabolomique et Fluxomique, Labo/service de l'auteur, Ville service., May 2011, Paris, France

Communication dans un congrès hal-02749839v1

The diversitiy of Oenococcus oeni

J. Bridier , Claisse O , Vanessa Vaizant , Coton M , Cécile Miot-Sertier et al.

Actes de colloques du 9e symposium international d’Œnologie de Bordeaux, 2011, Bordeaux, France. pp.290-291

Communication dans un congrès hal-05261434v1

Integrated approaches for deciphering the mechanisms controlling fruit nutritional quality in tomato

Christophe Rothan , Nicolas Viron , Louise Gilbert , Virginie V. Garcia , Johann J. Petit et al.

Colloque AI Fruit, Apr 2011, Angers, France

Communication dans un congrès hal-02804064v1

Variation journalière de la composition métabolique de fruit de tomate en cours de maturation

Camille Benard , Stéphane Bernillon , Mickael M. Maucourt , Benoit Biais , Sonia Osorio-Algar et al.

5. Journées scientifiques du Réseau Français de Métabolomique et Fluxomique, Labo/service de l'auteur, Ville service., May 2011, Paris, France

Communication dans un congrès hal-02749748v1

Fast and cheap metabolic phenotyping in plants using microplate technology

Yves Y. Gibon

4. Journées scientifiques du Réseau Français de Métabolomique et Fluxomique, May 2010, Marseille, France

Communication dans un congrès hal-02752517v1

A role for carbon metabolism in plant growth response to soil water deficit? An integrated perspective

Bertrand Muller , Irène Hummel , Florent Pantin , Ronan Sulpice , Mark Stitt et al.

SEB Main Meeting 2010, Jun 2010, Prague, Czech Republic

Communication dans un congrès hal-02751275v1

Fast and cheap metabolic phenotyping for functional genomics

Yves Y. Gibon

Indo French Symposium, Jan 2010, Lucknow, India

Communication dans un congrès hal-02752977v1

Plant metabolomics at Bordeaux Metabolome-Fluxome Facility. Tools and applications at PMFB

Catherine Deborde , Stéphane Bernillon , Mickael M. Maucourt , Cécile Cabasson , Isabelle Quintana et al.

4. Journées scientifiques du Réseau Français de Métabolomique et Fluxomique, May 2010, Marseille, France

Communication dans un congrès hal-02756773v1

Phenotypic variability among wild Vitis species: a tool to study some mechanisms underlying berry development and composition

Nathalie Ollat , Stephane Decroocq , Louis Bordenave , Ghislaine Hilbert , Cyril Hevin et al.

2. Rencontres Annuelles de l'ISVV, Institut des Sciences de la Vigne et du Vin (ISVV). FRA., Jul 2010, Villenave d'Ornon, France

Communication dans un congrès hal-02817846v1

Intra and interspecific biochemical phenotyping of Vitis

Nathalie Ollat , Catherine Deborde , Christel Renaud , Mickael M. Maucourt , Stéphanie Doumouya et al.

4. Journées scientifiques du Réseau Français de Métabolomique et Fluxomique, May 2010, Marseille, France

Communication dans un congrès hal-02757382v1

C metabolism and plant growth under water deficit: chicken and egg

Bertrand Muller , Irène Hummel , Florent Pantin , Ronan Sulpice , Maria Piques et al.

Salt & Water Stress in Plants : from molecules to crops, Gordon Research Conferences (GRC). USA., Jun 2010, Les Diablerets, Switzerland

Communication dans un congrès hal-02756341v1

Biochemical phenotyping of Vitis by 1H-NMR profiling and targeted enzymatic analysis

Nathalie Ollat , Catherine Deborde , Christel Renaud , Mickael M. Maucourt , Stéphanie Doumouya et al.

Metabolomics 2010, Jun 2010, Amsterdam, Netherlands

Communication dans un congrès hal-02753834v1

NMR profiling and more for the characterization of melon genetic resources and melon fruit physiology

Annick Moing , Asaph Aharoni , Benoit Biais , Ilana Rogachev , Sagit Meir et al.

4. Journées Scientifiques du Réseau Français de Métabolomique et Fluxomique, May 2010, Marseille, France

Communication dans un congrès hal-02754338v1

Applications and tools in plant metabolomics at Bordeaux Metabolome-Fluxome Facility

Catherine Deborde , Stéphane Bernillon , Mickael M. Maucourt , Cécile Cabasson , Patricia Ballias et al.

Metabolomics 2010, Jun 2010, Amsterdam, Netherlands

Communication dans un congrès hal-02757642v1

Fast and cheap metabolic phenotyping in plants using microplate technology

Yves Y. Gibon

EPSO workshop on plant phenotyping, Nov 2009, Jülich, Germany

Communication dans un congrès hal-02750440v1

Ecophysiology meets metabolic profiling

Yves Y. Gibon

Interdrought III, Oct 2009, Shangaï, China

Communication dans un congrès hal-02750983v1

Carbon budget, protein metabolism and growth: an integrative untargeted approach in Arabidopsis thaliana leaves

Yves Y. Gibon

8. Colloque national de la SFBV, Jul 2009, Strasbourg, France

Communication dans un congrès hal-02752011v1

Xeml Lab - Give old data a new life

Yves Y. Gibon

CAREX laboratory procedures workshop, Jun 2009, Viterbo, Italy

Communication dans un congrès hal-02753343v1

Ecophysiology meets metabolic profiling: an integrative approach of Arabidopsis thaliana responses to drought

Irène Hummel , Florent Pantin , R. Sulpice , M. Piques , Gaelle Rolland et al.

Interdrought III, Sep 2009, Shanghai, China

Communication dans un congrès hal-02752763v1

Hyperprolinemia in leaf tissues of C3 plants subjected to osmotic upshift could reflect metabolic disorders at the mitochondrial level

François R. Larher , Yves Gibon , Michael Moulin , Ronan Sulpice , P. Trotel et al.

6ème colloque national de la Société Française de Biologie Végétale, 2005, Arcachon, France

Communication dans un congrès hal-00016081v1

Damages to oxidative properties of mitochondria from leaf of tissues of C3 plants could be assessed by the amount of proline accumulated under osmotic stress

François R. Larher , Y. Gibon , Michael Moulin , Ronan Sulpice , P. Trotel et al.

FESPB, 14th Congress of the Federation of European Societies of Plant Biology, 23-27 août 2004, Cracovie, Pologne, 2004, Cracovie, Poland

Communication dans un congrès hal-00105872v1

Assessment of phenotypic trait plasticity in the oilseed Camelina sativa using integrated early-stage abiotic stress and field studies

Susana Silvestre , Sylvain Prigent , Pierre Pétriacq , L Kirsty Hassall , Malo Le Boulch et al.

Plant Physiology, In press, pp.kiag052. ⟨10.1093/plphys/kiag052⟩

Article dans une revue hal-05506432v1

Molecular and physiological characterization of two sunflower near-isogenic lines with contrasting haplotypes for leaf senescence

Marco Moroldo , Nicolas Blanchet , Nicolas Pouilly , Stéphanie Pateyron , Marie-Laure Martin et al.

BMC Plant Biology, 2026, 26 (1), pp.1683. ⟨10.1186/s12870-026-09110-8⟩

Article dans une revue hal-05655187v1

Metabolic profiling of three Brachypodium species reveals different adaptive strategies to ammonium stress

Marlon de la Peña , Izargi Vega-Mas , Gaëtan Glauser , Yves Gibon , Daniel Marino et al.

Plant Science, 2025, 360, pp.112684. ⟨10.1016/j.plantsci.2025.112684⟩

Article dans une revue hal-05245412v1

Interspecies predictions of growth traits from quantitative transcriptome data acquired during fruit development

Chloé Beaumont , Sylvain Prigent , Kentaro Mori , Pierre Baldet , Joana Jorly et al.

Journal of Experimental Botany, 2025, pp.eraf122. ⟨10.1093/jxb/eraf122⟩

Article dans une revue hal-05037526v1

The rates of starch depletion and hydraulic failure both play a role in drought-induced seedling mortality

Santiago Trueba , Noelia González Muñoz , Régis Burlett , Laurent J Lamarque , Yves Gibon et al.

Annals of Forest Science, 2024, 81 (1), pp.27. ⟨10.1186/s13595-024-01246-7⟩

Article dans une revue hal-04667578v1

Natural variation in the adjustment of primary metabolism determines ammonium tolerance in the model grass Brachypodium distachyon

Marlon de la Peña , Théo Poucet , Francesc Montardit-Tarda , Leyre Urmeneta , Jose Alberto Urbano-Gámez et al.

Journal of Experimental Botany, 2024, 75 (22), pp.7237-7253. ⟨10.1093/jxb/erae382⟩

Article dans une revue hal-05125893v1

Genetic control of abiotic stress-related specialized metabolites in sunflower

Marco Moroldo , Nicolas Blanchet , Harold Duruflé , Stéphane Bernillon , Thierry Berton et al.

BMC Genomics, 2024, 25 (1), pp.199. ⟨10.1186/s12864-024-10104-9⟩

Article dans une revue hal-04468891v1

Identification of metabolic and protein markers representative of the impact of mild nitrogen deficit on agronomic performance of maize hybrids

Maria Urrutia , Mélisande Blein-Nicolas , Olivier Fernandez , Stéphane Bernillon , Mickaël Maucourt et al.

Metabolomics, 2024, 20 (6), pp.128. ⟨10.1007/s11306-024-02186-z⟩

Article dans une revue hal-04799829v1

Deciphering molecular events behind Systemin-induced resistance to Botrytis cinerea in tomato plants

Julia Pastor-Fernández , Neus Sanmartín , Maria Manresa-Grao , Cédric Cassan , Pierre Pétriacq et al.

Journal of Experimental Botany, 2024, 75 (13), pp.4111-4127. ⟨10.1093/jxb/erae146⟩

Article dans une revue hal-04612162v1

Integrated analysis of metabolites and enzyme activities reveals the plasticity of central carbon metabolism in grape (Vitis vinifera cv. Cabernet Sauvignon) berries under carbon limitation

Qian Tong , Yongjian Wang , Regina Feil , John E Lunn , Xiaobo Xu et al.

Horticulture research, 2024, 12 (4), pp.uhae363. ⟨10.1093/hr/uhae363⟩

Article dans une revue hal-04997970v1

Multi-regulated GDP-l-galactose phosphorylase calls the tune in ascorbate biosynthesis

Pierre Baldet , Kentaro Mori , Sylvain Prigent , Guillaume Decros , Bertrand Beauvoit et al.

Journal of Experimental Botany, 2024, 75 (9), pp.2631-2643. ⟨10.1093/jxb/erae032/7607105⟩

Article dans une revue hal-04530669v1

Phylogenetically diverse wild plant species use common biochemical strategies to thrive in the Atacama Desert

Thomas Dussarrat , Ricardo Nilo-Poyanco , Tomás Moyano , Sylvain Prigent , Tim Jeffers et al.

Journal of Experimental Botany, 2024, 75 (11), pp.3596-3611. ⟨10.1093/jxb/erae117⟩

Article dans une revue hal-05125881v1

Different wheat loci are associated to heritable free asparagine content in grain grown under different water and nitrogen availability

Mélanie Lavoignat , Cédric Cassan , Pierre Pétriacq , Yves Gibon , Emmanuel Heumez et al.

TAG Theoretical and Applied Genetics, 2024, 137 (2), pp.46. ⟨10.1007/s00122-024-04551-x⟩

Article dans une revue hal-04461297v1

Metabolite quantification data based on 1H-NMR profiling of eggplant or pepper fruit during its development

Léa Roch , Catherine Deborde , Daniel Jacob , Anaïs Clavé , Marguerite Batsale et al.

BMC Research Notes, 2024, 17 (1), pp.337. ⟨10.1186/s13104-024-06996-1⟩

Article dans une revue hal-04800078v1

Ecological and metabolic implications of the nurse effect of Maihueniopsis camachoi in the Atacama Desert

Francisca Díaz , Thomas Dussarrat , Gabriela Carrasco-Puga , Sophie Colombie , Sylvain Prigent et al.

New Phytologist, 2024, 241 (3), pp.1074-1087. ⟨10.1111/nph.19415⟩

Article dans une revue hal-04514679v1

Enzyme‐based kinetic modelling of ASC–GSH cycle during tomato fruit development reveals the importance of reducing power and ROS availability

Guillaume Decros , Thomas Dussarrat , Pierre Baldet , Cédric Cassan , Cécile Cabasson et al.

New Phytologist, 2023, ⟨10.1111/nph.19160⟩

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Non-structural carbohydrates in woody plants compared among laboratories

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Plant Physiology, 2014, 164, pp.1204-1221. ⟨10.1104/pp.113.231241⟩

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Metabolic studies in plant organs: don't forget dilution by growth

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Frontiers in Plant Science, 2014, 5, pp.1-5. ⟨10.3389/fpls.2014.00085⟩

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Profiling sugar metabolism during fruit development in a peach progeny with different fructose-to-glucose ratios.

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Silencing of the tomato Sugar Partitioning Affecting protein (SPA) modifies sink strength through a shift in leaf sugar metabolism.

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Resolving the Role of Plant Glutamate Dehydrogenase: II. Physiological Characterization of Plants Overexpressing the Two Enzyme Subunits Individually or Simultaneously.

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Plant and Cell Physiology, 2013, 54 (10), ⟨10.1093/pcp/pct108⟩

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Impact of the carbon and nitrogen supply on relationships and connectivity between metabolism and biomass in a broad panel of Arabidopsis accessions.

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Plant Physiology, 2013, 162 (1), pp.347-63. ⟨10.1104/pp.112.210104⟩

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Metabolomic and elemental profiling of melon fruit quality as affected by genotype and environment

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Metabolomics, 2013, 9 (1), pp.57-77. ⟨10.1007/s11306-012-0429-1⟩

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SlARF4, an auxin response factor involved in the control of sugar metabolism during tomato fruit development

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Plant Physiology, 2013, 161 (3), pp.1362-1374. ⟨10.1104/pp.113.213843⟩

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Deciphering genetic diversity and inheritance of tomato fruit weight and composition through a systems biology approach

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Journal of Experimental Botany, 2013, 64 (18), pp.1-16. ⟨10.1093/jxb/ert349⟩

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A fluorometric assay for trehalose in the picomole range

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Plant Methods, 2013, 9 (1), pp.21. ⟨10.1186/1746-4811-9-21⟩

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The Plant cell, 2012, 24 (8), pp.3380-3392. ⟨10.1105/tpc.112.101279⟩

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Characterization of a NADH-dependent glutamate dehydrogenase mutant of [i]Arabidopsis[/i] demonstrates the key role of this enzyme in root carbon and nitrogen metabolism

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The Plant cell, 2012, 24 (10), pp.4044-4065. ⟨10.1105/tpc.112.103689⟩

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Mutagenesis of cysteine 81 prevents dimerization of the APS1 subunit of ADP-glucose pyrophosphorylase and alters diurnal starch turnover in Arabidopsis thaliana leaves

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The Plant Journal, 2012, 70 (2), pp.231-242. ⟨10.1111/j.1365-313X.2011.04860.x⟩

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The art of growing plants for experimental purposes: a practical guide for the plant biologist

Hendrik Poorter , Fabio Fiorani , Max Planck , Uli Schurr , Alex Finck et al.

Functional Plant Biology, 2012, 39 (10-11), pp.821-838. ⟨10.1071/FP12028⟩

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Identification of enzyme activity quantitative trait loci in a Solanum lycopersicum x Solanum pennellii introgression line population

Marie-Caroline Steinhauser , Dirk Steinhauser , Yves Y. Gibon , Marie Bolger , Stéphanie Arrivault et al.

Plant Physiology, 2011, 157 (3), pp.998-1014. ⟨10.1104/pp.111.181594⟩

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Water deficits uncouple growth from photosynthesis, increase C content, and modify the relationships between C and growth in sink organs

Bertrand Muller , Florent Pantin , Michel M. Génard , Olivier Turc , Sandra Freixes et al.

Journal of Experimental Botany, 2011, 62 (6), pp.1715-1729. ⟨10.1093/jxb/erq438⟩

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Extensive metabolic cross-talk in melon fruit revealed by spatial and developmental combinatorial metabolomics

Annick Moing , Asaph Aharoni , Benoit Biais , Ilana Rogachev , Sagit Meir et al.

New Phytologist, 2011, 190 (3), pp.683-696. ⟨10.1111/j.1469-8137.2010.03626.x⟩

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Use of TILLING and robotised enzyme assays to generate an allelic series of Arabidopsis thaliana mutants with altered ADP-glucose pyrophosphorylase activity

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Journal of Plant Physiology, 2011, 168 (12), pp.1395-1405. ⟨10.1016/j.jplph.2011.01.013⟩

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Modelling temperature-compensated physiological rates, based on the co-ordination of responses to temperature of developmental processes

Boris Parent , Olivier Turc , Yves Y. Gibon , Francois F. Tardieu

Journal of Experimental Botany, 2010, 61 (8), pp.2057-2069. ⟨10.1093/jxb/erq003⟩

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Arabidopsis has a cytosolic fumarase required for the massive allocation of photosynthate into fumaric acid and for rapid plant growth on high nitrogen

Itsara Pracharoenwattana , Wenxu Zhou , Olivier Keech , Perigio B. Francisco , Thanikan Udomchalothorn et al.

The Plant Journal, 2010, 62 (5), pp.785-795. ⟨10.1111/j.1365-313X.2010.04189.x⟩

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Arabidopsis plants acclimate to water deficit at low cost through changes of carbon usage: an integrated perspective using growth, metabolite, enzyme, and gene expression analysis

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Plant Physiology, 2010, 154 (1), pp.357-372. ⟨10.1104/pp.110.157008⟩

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Enzyme activity profiles during fruit development in tomato cultivars and Solanum pennellii

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Plant Physiology, 2010, 153 (1), pp.80-98. ⟨10.1104/pp.110.154336⟩

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Genetic analysis of central carbon metabolism unveils an amino acid substitution that alters maize NAD-dependent isocitrate dehydrogenase activity

Nengyi Zhang , Amit Gur , Yves Y. Gibon , Ronan Sulpice , Sherry Flint-Garcia et al.

PLoS ONE, 2010, 5 (4), pp.e9991. ⟨10.1371/journal.pone.0009991⟩

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Functional analysis of the anaphase promoting complex activator CCS52A highlights the crucial role of endo-reduplication for fruit growth in tomato

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The Plant Journal, 2010, 62 (5), pp.727 - 741. ⟨10.1111/j.1365-313X.2010.04198.x⟩

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Adjustment of growth, starch turnover, protein content and central metabolism to a decrease of the carbon supply when Arabidopsis is grown in very short photoperiods

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Plant, Cell and Environment, 2009, 32 (7), pp.859-874. ⟨10.1111/j.1365-3040.2009.01965.x⟩

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Xeml Lab: a tool that supports the design of experiments at a graphical interface and generates computer-readable metadata files, which capture information about genotypes, growth conditions, environmental perturbations and sampling strategy

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Plant, Cell and Environment, 2009, 32 (9), pp.1185-1200. ⟨10.1111/j.1365-3040.2009.01964.x⟩

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Starch as a major integrator in the regulation of plant growth

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Proceedings of the National Academy of Sciences of the United States of America, 2009, 106 (25), pp.10348-10353. ⟨10.1073/pnas.0903478106⟩

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Multilevel Analysis of Primary Metabolism Provides New Insights into the Role of Potassium Nutrition for Glycolysis and Nitrogen Assimilation in Arabidopsis Roots

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Plant Physiology, 2009, 150 (2), pp.772-785. ⟨10.1104/pp.108.133629⟩

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Adjustment of growth and central metabolism to a mild but sustained nitrogen-limitation in Arabidopsis

Hendrik Tschoep , Yves Gibon , Petronia Carillo , Patrick Armengaud , Marek Szecowka et al.

Plant, Cell and Environment, 2009, 32 (3), pp.300-318. ⟨10.1111/j.1365-3040.2008.01921.x⟩

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Ribosome and transcript copy numbers, polysome occupancy and enzyme dynamics in Arabidopsis

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Molecular Systems Biology, 2009, 5, pp.314 : 1-17. ⟨10.1038/msb.2009.68⟩

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Absence of Symbiotic Leghemoglobins Alters Bacteroid and Plant Cell Differentiation During Development of Lotus japonicus Root Nodules

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Molecular Plant-Microbe Interactions, 2009, 22 (7), pp.800-808. ⟨10.1094/mpmi-22-7-0800⟩

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High-throughput functional assessment of polysaccharide-active enzymes using matrix-assisted laser desorption/ionization–time-of-flight mass spectrometry as exemplified on plant cell wall polysaccharides

Edouard Leboeuf , Peter Immerzeel , Yves Gibon , Martin Steup , Markus Pauly

Analytical Biochemistry, 2008, 373 (1), pp.9-17. ⟨10.1016/j.ab.2007.10.007⟩

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Integrative analyses of genetic variation in enzyme activities of primary carbohydrate metabolism reveal distinct modes of regulation in Arabidopsis thaliana

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Genome Biology, 2008, 9 (8), pp.R129. ⟨10.1186/gb-2008-9-8-r129⟩

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Multilevel genomic analysis of the response of transcripts, enzyme activities and metabolites in Arabidopsis rosettes to a progressive decrease of temperature in the non-freezing range

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Plant, Cell and Environment, 2008, 31 (4), pp.518-547. ⟨10.1111/j.1365-3040.2007.01763.x⟩

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Multilevel genomics analysis of carbon signalling during low carbon availability: coordinating the supply and utilisation of carbon in a fluctuating environment

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Functional Plant Biology, 2007, 34 (6), pp.526. ⟨10.1071/fp06249⟩

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The enigmatic contribution of mitochondrial function in photosynthesis

A. Nunes-Nesi , R. Sulpice , Y. Gibon , A. Fernie

Journal of Experimental Botany, 2007, 59 (7), pp.1675-1684. ⟨10.1093/jxb/ern002⟩

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Description and applications of a rapid and sensitive non-radioactive microplate-based assay for maximum and initial activity of D-ribulose-1,5-bisphosphate carboxylase/oxygenase

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Plant, Cell and Environment, 2007, 30 (9), pp.1163-1175. ⟨10.1111/j.1365-3040.2007.01679.x⟩

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Genome-wide reprogramming of metabolism and regulatory networks of Arabidopsis in response to phosphorus

Rosa Morcuende , Rajendra Bari , Yves Gibon , Wenming Zheng , Bikram Datt Pant et al.

Plant, Cell and Environment, 2007, 30 (1), pp.85-112. ⟨10.1111/j.1365-3040.2006.01608.x⟩

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Temporal responses of transcripts, enzyme activities and metabolites after adding sucrose to carbon-deprived Arabidopsis seedlings

Daniel Osuna , Bjorn Usadel , Rosa Morcuende , Yves Gibon , Oliver Bläsing et al.

The Plant Journal, 2007, 49 (3), pp.463-491. ⟨10.1111/j.1365-313x.2006.02979.x⟩

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Deficiency of mitochondrial fumarase activity in tomato plants impairs photosynthesis via an effect on stomatal function

Adriano Nunes-Nesi , Fernando Carrari , Yves Gibon , Ronan Sulpice , Anna Lytovchenko et al.

The Plant Journal, 2007, 50 (6), pp.1093-1106. ⟨10.1111/j.1365-313x.2007.03115.x⟩

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GC-EI-TOF-MS analysis of in vivo carbon-partitioning into soluble metabolite pools of higher plants by monitoring isotope dilution after 13CO2 labelling

Jan Huege , Ronan Sulpice , Yves Gibon , Jan Lisec , Karin Koehl et al.

Phytochemistry, 2007, 68 (16-18), pp.2258-2272. ⟨10.1016/j.phytochem.2007.03.026⟩

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PageMan: An interactive ontology tool to generate, display, and annotate overview graphs for profiling experiments

Björn Usadel , Axel Nagel , Dirk Steinhauser , Yves Gibon , Oliver Bläsing et al.

BMC Bioinformatics, 2006, 7 (1), ⟨10.1186/1471-2105-7-535⟩

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Increased C availability at elevated carbon dioxide concentration improves N assimilation in a legume

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Plant, Cell and Environment, 2006, 29 (8), pp.1651-1658. ⟨10.1111/j.1365-3040.2006.01549.x⟩

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Integration of metabolite with transcript and enzyme activity profiling during diurnal cycles in Arabidopsis rosettes

Yves Gibon , Bjoern Usadel , Oliver Blaesing , Beate Kamlage , Melanie Hoehne et al.

Genome Biology, 2006, 7 (8), pp.R76. ⟨10.1186/gb-2006-7-8-r76⟩

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Variation of Enzyme Activities and Metabolite Levels in 24 Arabidopsis Accessions Growing in Carbon-Limited Conditions

Joanna Cross , Maria von Korff , Thomas Altmann , Linda Bartzetko , Ronan Sulpice et al.

Plant Physiology, 2006, 142 (4), pp.1574-1588. ⟨10.1104/pp.106.086629⟩

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Does elevated atmospheric [CO2] alter diurnal C uptake and the balance of C and N metabolites in growing and fully expanded soybean leaves?

E. Ainsworth , A. Rogers , A. Leakey , L. Heady , Y. Gibon et al.

Journal of Experimental Botany, 2006, 58 (3), pp.579-591. ⟨10.1093/jxb/erl233⟩

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Sugar-induced increases in trehalose 6-phosphate are correlated with redox activation of ADPglucose pyrophosphorylase and higher rates of starch synthesis in Arabidopsis thaliana

John E Lunn , Regina Feil , Janneke Hm Hendriks , Yves Gibon , Rosa Morcuende et al.

Biochemical Journal, 2006, 397 (1), pp.139-148. ⟨10.1042/BJ20060083⟩

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Identification and Characterisation of the α and β Subunits of Succinyl CoA Ligase of Tomato

Claudia Studart-Guimarães , Yves Gibon , Nicolás Frankel , Craig Wood , María Inés Zanor et al.

Plant Molecular Biology, 2005, 59 (5), pp.781-791. ⟨10.1007/s11103-005-1004-1⟩

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Sugars and Circadian Regulation Make Major Contributions to the Global Regulation of Diurnal Gene Expression in Arabidopsis

Oliver Bläsing , Yves Gibon , Manuela Günther , Melanie Höhne , Rosa Morcuende et al.

The Plant cell, 2005, 17 (12), pp.3257-3281. ⟨10.1105/tpc.105.035261⟩

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Extension of the Visualization Tool MapMan to Allow Statistical Analysis of Arrays, Display of Coresponding Genes, and Comparison with Known Responses

Björn Usadel , Axel Nagel , Oliver Thimm , Henning Redestig , Oliver Blaesing et al.

Plant Physiology, 2005, 138 (3), pp.1195-1204. ⟨10.1104/pp.105.060459⟩

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GMD@CSB.DB: the Golm Metabolome Database

J. Kopka , N. Schauer , S. Krueger , C. Birkemeyer , B. Usadel et al.

Bioinformatics, 2005, 21 (8), pp.1635-1638. ⟨10.1093/bioinformatics/bti236⟩

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Metabolite profiling in plant biology: platforms and destinations

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Genome Biology, 2004, 5 (6), pp.109. ⟨10.1186/gb-2004-5-6-109⟩

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mapman: a user-driven tool to display genomics data sets onto diagrams of metabolic pathways and other biological processes

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The Plant Journal, 2004, 37 (6), pp.914-939. ⟨10.1111/j.1365-313x.2004.02016.x⟩

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Expression of a yeast acetyl CoA hydrolase in the mitochondrion

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Plant Molecular Biology, 2004, 55 (5), pp.645-662. ⟨10.1007/s11103-004-1557-4⟩

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A Robot-Based Platform to Measure Multiple Enzyme Activities in Arabidopsis Using a Set of Cycling Assays: Comparison of Changes of Enzyme Activities and Transcript Levels during Diurnal Cycles and in Prolonged Darkness[W]

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The Plant cell, 2004, 16 (12), pp.3304-3325. ⟨10.1105/tpc.104.025973⟩

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An assessment of the physiological properties of the so-called compatible solutes using in vitro experiments with leaf discs

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Plant Physiology and Biochemistry, 2003, 41 (6-7), pp.657-666. ⟨10.1016/s0981-9428(03)00076-7⟩

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ADP-Glucose Pyrophosphorylase Is Activated by Posttranslational Redox-Modification in Response to Light and to Sugars in Leaves of Arabidopsis and Other Plant Species

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Plant Physiology, 2003, 133 (2), pp.838-849. ⟨10.1104/pp.103.024513⟩

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Reduced Expression of Aconitase Results in an Enhanced Rate of Photosynthesis and Marked Shifts in Carbon Partitioning in Illuminated Leaves of Wild Species Tomato

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Plant Physiology, 2003, 133 (3), pp.1322-1335. ⟨10.1104/pp.103.026716⟩

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Sensitive and high throughput metabolite assays for inorganic pyrophosphate, ADPGlc, nucleotide phosphates, and glycolytic intermediates based on a novel enzymic cycling system

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The Plant Journal, 2002, 30 (2), pp.221-235. ⟨10.1046/j.1365-313x.2001.01278.x⟩

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Interaction between exogenous glycine betaine and the photorespiratory pathway in canola leaf discs

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Physiologia Plantarum, 2002, 116 (4), pp.460-467. ⟨10.1034/j.1399-3054.2002.1160404.x⟩

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Starch Synthesis in Potato Tubers Is Regulated by Post-Translational Redox Modification of ADP-Glucose Pyrophosphorylase

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The Plant cell, 2002, 14 (9), pp.2191-2213. ⟨10.1105/tpc.003640⟩

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Metabolic Activity Decreases as an Adaptive Response to Low Internal Oxygen in Growing Potato Tubers

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Biological Chemistry, 2000, 381 (8), ⟨10.1515/bc.2000.093⟩

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Proline accumulation in canola leaf discs subjected to osmotic stress is related to the loss of chlorophylls and to the decrease of mitochondrial activity

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Physiologia Plantarum, 2000, 110 (4), pp.469-476. ⟨10.1111/j.1399-3054.2000.1100407.x⟩

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A Single-Step Purification for Glycine Betaine Determination in Plant Extracts by Isocratic HPLC

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Journal of Agricultural and Food Chemistry, 1999, 47 (9), pp.3718-3722. ⟨10.1021/jf990031h⟩

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Exogenously supplied glycine betaine in spinach and rapeseed leaf discs: compatibility or non-compatibility?

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Is glycine betaine a non-compatible solute in higher plants that do not accumulate it?

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Plant, Cell and Environment, 1997, 20 (3), pp.329-340. ⟨10.1046/j.1365-3040.1997.d01-82.x⟩

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Cycling Assay for Nicotinamide Adenine Dinucleotides: NaCl Precipitation and Ethanol Solubilization of the Reduced Tetrazolium

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Dynamic in situ characterisation of grapevine volatiles via drone-mounted sampling and Gc-MS analysis : Advancing chemical ecology in viticulture.

Bianca Lespine , Mickaël Maucourt , Pierre Pétriacq , Yves Gibon

RFMF - réseau francophone de métabolomique et fluxomique, May 2026, Lille, France

Poster de conférence hal-05655576v1

TARGET: Towards the culture and genome engineering of non-cultivated pathogenic bacteria

Olivia Bulka , Gaëlle Duflot , Anani Amegan Missinou , Yonathan Arfi , Nathalie Arricau-Bouvery et al.

26th Biennial Congress of the International Organization for Mycoplasmology, Jul 2026, Cracovie (PL), Poland

Poster de conférence hal-05708109v1

From metabolomics to models: predicting functional traits and water-use strategies for crop resilience A metabolic journey into plant functional strategies

Cathleen Mirande-Ney , Santiago Trueba , Sylvain Delzon , Pierre Pétriacq , Yves Gibon et al.

iCROPM2026, Feb 2026, Florence, Italy.

Poster de conférence hal-05778047v1

CABiosE : Comparative Analyses of Biostimulant Effects on tomato crops and their associated microbiota, under water stress conditions.

Marine Honoré , Cecile Cabasson , Pierre Joly , Pierre Pétriacq , Sophie Colombie et al.

17émes journées scientifiques du RFMF, Jun 2025, Paris, France

Poster de conférence hal-05190283v1

Predictive metabolomic to decipher plant eco-evolutive tendencies

Cathleen Mirande-Ney , Santiago Trueba , Yves Gibon , Sylvain Prigent

Journées Ouvertes Biologie, Informatique, Mathématiques (JOBIM2025), Jul 2025, Bordeaux, France

Poster de conférence hal-05166151v1

1H-NMR profiling of eggplant and pepper fruits during their development

Catherine Deborde , Léa Roch , Daniel Jacob , Anaïs Clavé , Marguerite Batsale et al.

17èmes Journées Scientifiques du RFMF, Jun 2025, Paris, France

Poster de conférence hal-05190161v1

MetaboHUB – Bordeaux Metabolome Facility

Claudia Rouveyrol , Millena C. Barros Santos , David Benaben , Yohann Boutté , Cecile Cabasson et al.

Metabolomics 2024, Jun 2024, Osaka, Japan. ⟨10.15454/1.5572412770331912E12⟩

Poster de conférence hal-05194981v1

Unveiling the Impact of Biostimulant Application on Tomato Metabolism through a metabolomics strategy

Cathleen Mirande-Ney , Nicolas Guibert , Millena Cristina Barros Santos , Adam Rochepeau , Théo Poucet et al.

16ème journées scientifiques du RFMF, Jun 2024, Saint malo, France

Poster de conférence hal-04677506v1

Tutti frutti: Metabolomics Meets Machine Learning for Juicy Discoveries

Sylvain Prigent , Millena C. Barros Santos , Giovanni Melandri , Georges Randriafanomezantsoa Radohery , Cédric Cassan et al.

JOBIM 2024 - Journées ouvertes en Biologie, Informatique et Mathématiques, Jun 2024, Toulouse, France

Poster de conférence hal-04677398v1

The UNTWIST project: Unraveling Stress Response Mechanisms in Camelina sativa for Enhanced Crop Resilience in European Agriculture

Malo Le Boulch , Cédric Cassan , Pierre Pétriacq , Yves Gibon , Sylvain Prigent

JOBIM 2024 - Journées Ouvertes en Biologie, Informatique et Mathématiques, Jun 2024, Toulouse, France

Poster de conférence hal-04677424v1

Using metabolomics and predictive metabolomic to study the physiology of an old rustic oilseed plant.

Malo Le Boulch , Millena C. Barros Santos , Susana Silvestre , Dominik Grosskinsky , Anaïs da Costa et al.

Metabolomics 2023, Jun 2023, Niagara falls, Canada

Poster de conférence hal-04396004v1

Chemistry at the service of Plant Science to decipher Plant Metabolism

Millena C. Barros Santos , David Benaben , Cecile Cabasson , Cédric Cassan , Jean-Marc Deogratias et al.

1st Chemistry Biology Interface Day (CBID), Nov 2023, Pessac, France

Poster de conférence hal-05194945v1

Using machine-learning on metabolomics data to predict complex phenotypes

Sylvain Prigent , Yves Gibon

JOBIM2022, Jul 2022, Rennes, France

Poster de conférence hal-03760581v1

Presence/absence variations and SNPs equally contribute to the variations of protein and metabolite abundance

Yacine Djabali , Melisande Blein-Nicolas , Annick Moing , Jorge Duarte , Stéphane Bernillon et al.

Congrès Analytics 2022, Sep 2022, Nantes, France.

Poster de conférence hal-03879730v1

Presence/absence variations and SNPs equally contribute to the variations of protein and metabolite abundance

Yacine Djabali , Mélisande Blein , Annick Moing , Jorge Duarte , Thierry Berton et al.

63rd Annual Maize Genetics Meeting, Mar 2021, Online, United States

Poster de conférence hal-03368764v1

The PHYTOSTIM Project (2021-2025): Toward an integrative Analysis of Phytostimulant Mode of Action and Acceptance

Cecile Cabasson , Nicolas Guibert , Sabri Najaï , Joana Jorly , C. Eyssan et al.

XII International Agriculture Symposium "AGROSYM 2021", Oct 2021, Sarajevo, Bosnia and Herzegovina. pp.P80, Agrosym 2021 - Book of proceedings

Poster de conférence hal-03383359v1

MetaboHUB-Bordeaux

Stéphane Bernillon , Cecile Cabasson , Cédric Cassan , Grégory da Costa , Catherine Deborde et al.

Journées Scientifiques INRA-BAP, Sep 2019, Hyères, France. , 2019

Poster de conférence hal-02570809v1

Modeling from functioning of a grape berry to the whole plant

Zhanwu Dai , Jinliang Chen , Junqi Zhu , Michel Genard , Bertrand Beauvoit et al.

21st GiESCO International Meeting "A Multidisciplinary Vision towards Sustainable Viticulture", Jun 2019, Thessalonique, Greece. , 2019, A Multidisciplinary Vision towards Sustainable Viticulture

Poster de conférence hal-03420427v1

NMR metabolomic profiling reveals a distinct metabolic recovery response in shoots and roots of temporarily drought-stressed sugar beets

Rita Wedeking , Mickael Maucourt , Catherine Deborde , Annick Moing , Yves Gibon et al.

International Plant Spectroscopy Conference (IPSC), Mar 2019, Berlin, Germany. 2019

Poster de conférence hal-02556922v1

Leaf metabolite profiling reveals biochemical diversities within wheat genetic resources

Pierre Petriacq , Amélie Flandin , Sylvain Prigent , Stéphane Bernillon , Cédric Cassan et al.

15. Annual Conference of the Metabolomics Society (Metabolomics 2019), Jun 2019, La Hague, Netherlands. , pp.209-209, 2019, METABOLOMICS 2019, 15th Annual Conference of the Metabolomics Society, June 23-27, The Hague, Netherlands

Poster de conférence hal-02936725v1

Grain abortion under drought in maize: expansive growth and hydraulics also matter

Olivier Turc , Vincent Oury , Yves Gibon , Duyên Prodhomme , Francois Tardieu et al.

60. Maize Genetics Conference, Mar 2018, Saint-Malo, France. , 2018

Poster de conférence hal-02738086v1

A multi-level modelling framework for simulating grape growth and biochemical compositions under genotype x environment interactions

Jinliang Chen , Junqi Zhu , Benjamin Tiffon-Terrade , Michel Génard , Bertrand Beauvoit et al.

12. International Conference on Grapevine Breeding and Genetics, Jul 2018, Bordeaux, France. ISHS-International Society for Horticultural Science, Acta Horticulturae, 2018

Poster de conférence hal-02736966v1

Combined metabolomic and proteomic profiling of maize leaf to reveal metabolic responses to cold temperatures

Maria Urrutia , Melisande Blein-Nicolas , Stéphane Bernillon , Catherine Deborde , Mickaël Maucourt et al.

11. Journées Scientifiques du RFMF, May 2018, Liège, Belgium. pp.P25, 2018, 11. Journées Scientifiques du RFMF

Poster de conférence hal-03125712v1

Primary metabolism investigation of fleshy fruit species using 1H-NMR profiling

Léa Roch , Coffi Belmys Cakpo , Catherine Deborde , Mickael Maucourt , Thierry Berton et al.

EUROMAR - European Magnetic Resonance Meeting, Jul 2018, Nantes, France. 2018

Poster de conférence hal-02737961v1

Yield maintenance under drought: expansive growth and hydraulics also matter in reproductive organs

Olivier Turc , Vincent Oury , Yves Gibon , Duyên Prodhomme , Francois Tardieu

Interdrought V, Feb 2017, Hyderabad, India. 2017

Poster de conférence hal-01605905v1

Central carbon metabolism and anthocyanin biosynthesis in grape berry

Zhanwu Dai , Jing Wu , Yves Gibon , Ghislaine Hilbert , Messa Meddar et al.

4. International Conference on Plant Metabolism, Jul 2017, Dalian, China. 2017

Poster de conférence hal-02736097v1

Are metabolic traits markers of the plant response to virus infection? A phenotype and genotype study in Arabidopsis thaliana in response to TuMV (Turnip mosaic virus) in a natural environment

Bernadette Rubio , Patrick Cosson , Mélodie Caballero , Frederic Revers , Yves Gibon et al.

16. Rencontres de Virologie Végétale (RVV 2017), Jan 2017, Aussois, France. 2017

Poster de conférence hal-01603260v1

Comparative study of primary metabolite patterns in diverse fleshy fruit species

Léa Roch , C B Cakpo , Thierry Berton , Stéphane Bernillon , Stéphanie Arrivault et al.

MetaboMeeting, Dec 2017, Birmingham (UK), United Kingdom

Poster de conférence hal-04955742v1

Multiscale Fruit Modeling: integrating biophysical fruit growth with biochemical metabolisms in 10 fruits

Zhanwu Dai , Bertrand Beauvoit , Sophie Colombie , Michel Génard , Gilles Vercambre et al.

2. Annual Crops in silico Symposium and Workshop, Jun 2017, Oxford, United Kingdom. 2017

Poster de conférence hal-02735987v1

Physiological Analysis of Buds Dormancy in Sweet Cherry

Rémi Beauvieux , Bénédicte Wenden , Camille Benard , Hélène Christmann , Yves Gibon et al.

Plant and Animal Genome XXV, Jan 2017, San Diego, United States. 2017

Poster de conférence hal-01603066v1

Tomato cultivars with high resistance to blossom-end rot show a greater antioxidant capacity prior to symptom appearance

Rached Moalla , Pierre Baldet , Yves Gibon , Chiaki Matsukura , Tohru Ariizumi et al.

14. Solanaceae and 3. Cucurbitaceae Genomics Joint Conference - Solcuc2017, Sep 2017, Valencia, Spain. 2017

Poster de conférence hal-02734102v1

Metabolites analysis of flower buds during dormancy in sweet cherry

Rémi Beauvieux , Bénédicte B. Wenden , Camille Bénard , Hélène Christmann , Yves Y. Gibon et al.

8. International Rosaceae Genomics Conference (RGC8), Jun 2016, Angers, France. 2016

Poster de conférence hal-02739660v1

Yield reduction under high temperature is paired with a low carbon status in microvine

Nathalie Luchaire , Laurent Torregrosa , Yves Gibon , Markus Rienth , Charles Romieu et al.

10. International Symposium on Grapevine Physiology and Biotechnology, Jun 2016, Verone, Italy. 2016

Poster de conférence hal-02793305v1

Combining LCMS data from two years for plant performance biomarkers discovery

Maria Urrutia Rosauro , Stéphane Bernillon , Nadia Lamari , Mickael M. Maucourt , Patricia Ballias et al.

Metabolomics 2016. 12. Annual Conference of the Metabolomics Society, Jun 2016, Dublin, United Kingdom. 2016

Poster de conférence hal-02742089v1

Plant Metabolomics at Bordeaux Metabolome Facility, a member of MetaboHUB and PHENOME IA projects. Tools and Applications

Catherine Deborde , Patricia Ballias , Camille Bénard , Stéphane Bernillon , Thierry Berton et al.

10. journées scientifiques du Réseau Francophone de Métabolomique et Fluxomique RFMF 2016, May 2016, Montpellier, France. 2016

Poster de conférence hal-02743906v1

The timing of shifts in the transcriptome and proteome in relation to metabolic state during tomato fruit development

Isma Belouah , Thierry Balliau , Camille Benard , Bertrand Beauvoit , Sophie Colombie et al.

Metabolomics 2016. 12. Annual Conference of the Metabolomics Society, Jun 2016, Dublin, Ireland. , 2016

Poster de conférence hal-01603579v1

How to optimize metabolites concentrations and fluxes in a metabolic pathway? Backgrounds and Basics

Christine Nazaret , Sophie Colombié , Bertrand Beauvoit , Martine Dieuaide-Noubhani , Jean-Pierre Mazat et al.

International Study Group for Systems Biology meeting (ISGSB 2016) , Oct 2016, Jena, Germany.

Poster de conférence hal-01445608v1

Plant Metabolomics at Bordeaux Metabolome Facility, a member of MetaboHUB and PHENOME IA projects. Tools and Applications

Catherine Deborde , Patricia Ballias , Camille Bénard , Stéphane Bernillon , Thierry Berton et al.

Metabolomics 2016. 12. Annual Conference of the Metabolomics Society, Jun 2016, Dublin, Ireland. 2016

Poster de conférence hal-02741696v1

Searching for marker metabolites of crop performance

Annick Moing , Maria Urrutia , Olivier Fernandez , Vanessa Zhendre , Nadia Lamari et al.

Metabolomics 2016. 12. Annual Conference of the Metabolomics Society, Jun 2016, Dublin, United Kingdom. 2016

Poster de conférence hal-02744241v1

Characterization of a plant cell suspension culture of Vitis vinifera: biomass composition assessment before C13-metabolic flux analysis

Angela Machado Vieira , Stéphanie Cluzet , Catherine Deborde , Ghislaine Hilbert , Annick Moing et al.

10. journées scientifiques du Réseau Francophone de Métabolomique et Fluxomique RFMF 2016, May 2016, Montpellier, France. 2016

Poster de conférence hal-02741756v1

Interaction between the enzymes of central carbon metabolism and anthocyanin biosynthesis during grape berry development

Zhanwu Dai , Jing Wu , Yves Gibon , Ghislaine Hilbert , Messa Meddar et al.

Macromolecules and Secondary Metabolites of Grapevine and Wine - Macrowine 2016, Jun 2016, Changins, Switzerland. 2016

Poster de conférence hal-02744264v1

Metabolic profiles and viral charge genome wide mapping in Arabidopsis thaliana in response to TuMV (Turnip mosaic virus) in a natural environment

Bernadette Rubio , Patrick Cosson , Mélodie Caballero , Frederic Revers , Yves Gibon et al.

20. General Congress of EUCARPIA "Plant breeding: the art of bringing science to life", Aug 2016, Zurich, Switzerland. , Abstracts

Poster de conférence hal-02953367v1

Modelling metabolic fluxes during tomato fruit development

Sophie Colombie , Bertrand Beauvoit , Christine Nazaret , Camille Benard , Martine Dieuaide Noubhani et al.

12. Solanaceae Conference SOL 2015, Oct 2015, Bordeaux, France. 2015, SOL 2015

Poster de conférence hal-01601445v1

Cold treatment affects the metabolite profiles of maize leaves

Nadia Lamari , Vanessa Zhendre , Stéphane Bernillon , Mickael M. Maucourt , Catherine Deborde et al.

9. Journées scientifiques du RFMF, Jun 2015, Lille, France. 2015

Poster de conférence hal-02742488v1

Combining MS and proton NMR metabolomic profiling during tomato fruit development to study environment effect on metabolism

Léa Roch , Stéphane Bernillon , Mickael Maucourt , Catherine Deborde , Camille Benard et al.

12. Solanaceae Conference SOL 2015, Oct 2015, Bordeaux, France. 2015, SOL 2015 - Book of abstracts

Poster de conférence hal-01606414v1

Towards improved fruit set efficiency using tomato genetic resources

Tohru Ariizumi , Y Shinozaki , Y Okabe , K Hoshikawa , M Shikata et al.

12. Solanaceae Conference SOL 2015, Oct 2015, Bordeaux, France. 2015, SOL 2015

Poster de conférence hal-01604671v1

Combining MS and NMR metabolomic profiling during tomato fruit development to study environment effect on metabolism

Léa Roch , Stéphane Bernillon , Mickael M. Maucourt , Catherine Deborde , Camille Bénard et al.

9. Journées scientifiques du RFMF, Jun 2015, Lille, France. 2015

Poster de conférence hal-02739251v1

Primary metabolism intermediates of two tomato leaf tissues in contrasted light intensity conditions

Stéphane Bernillon , Stéphanie Arrivault , Manuela Guenther , Regina Feil , Patricia Ballias et al.

9. Journées scientifiques du RFMF, Jun 2015, Lille, France. 2015

Poster de conférence hal-02740588v1

Plant Metabolomics at Bordeaux Metabolome Facility, a member of MetaboHUB and PHENOME IA projects. Tools and Applications.

Annick Moing , Catherine Deborde , Patricia Ballias , Camille Bénard , Stéphane Bernillon et al.

9. Journées scientifiques du RFMF, Jun 2015, Lille, France. 2015

Poster de conférence hal-02743630v1

Consequences of high temperatures and drought on peach fruit production strongly depends on their period of occurence

Fatima Adra , Gilles Vercambre , Daniel Plénet , Benedicte Bakan , Agathe Noblet et al.

ISHS International Symposium, INNOHORT, Jun 2015, Avignon, France. 2015, Innovation in Integrated & Organic Horticulture

Poster de conférence hal-01608225v1

Arabidopsis thaliana susceptibility to TuMV (Turnip mosaic virus) in natural environment: mapping loci involved in viral charge and preliminary results on associated metabolic profiles

Bernadette Rubio , Patrick Cosson , Mélodie Caballero , Frederic Revers , Yves Y. Gibon et al.

15. Rencontres de Virologie Végétale (RVV), Jan 2015, Aussois, France. 2015

Poster de conférence hal-02797938v1

Suppression of ADP-glucose pyrophosphorylase genes affects fruit skin thickness as well as fruit sugar and sugar phosphate contents in tomato (Solanum lycopersicum L.)

H Suzuki , M Sato , S Nonaka , Yves Gibon , Christophe Rothan et al.

12. Solanaceae Conference SOL 2015, Oct 2015, Bordeaux, France. 2015, SOL 2015

Poster de conférence hal-01602128v1

Assessment of metabolome compartmentation changes during tomato leaf development using nonaqueous fractionation

Clémence de Jaham , Benjamin Thiombiano , Camille Benard , A. P. Alonso , J. C. Cocuron et al.

12. Solanaceae Conference SOL 2015, Oct 2015, Bordeaux, France. 2015, SOL 2015 - Book of abstracts

Poster de conférence hal-01603745v1

Metabolomic analyses in sweet cherry

José Quero-Garcia , Guillaume Lalanne-Tisne , Virginie Cocureau , José Antonio Campoy , Yves Y. Gibon et al.

7. International Rosaceae Genomics Conference, Jun 2014, Seattle, United States. 2014

Poster de conférence hal-02792223v1

Plant Metabolomics at Bordeaux Metabolome Facility, a member of MetaboHUB IA project. Tools and Applications

Annick Moing , Catherine Deborde , Patricia Ballias , Camille Bénard , Stéphane Bernillon et al.

8. Journées Scientifiques du Réseau Français de Métabolomique et Fluxomique RFMF, May 2014, Lyon, France. 1 p., 2014

Poster de conférence hal-02799366v1

XEML Interactive designer

Benjamin Dartigues , Kenny Biliau , Cécile Cabasson , Yves Gibon , Joachim Kopka et al.

Bordeaux Computational Biology and Bioinformatics, Nov 2014, Bordeaux, France. , 1 p., 2014

Poster de conférence hal-01203290v1

Integrative analysis of metabolite and enzyme profiles in ripening grape berries in response to source-sink modulation

Zhanwu Z. Dai , Natalia Bobeica , John Edward Lunn , Regina Feil , Ghislaine Hilbert et al.

3. Annual Conference of the COST ACTION QUALITYFRUIT, Sep 2014, Chania, Greece. 2014, Book of abstracts

Poster de conférence hal-02740512v1

Development of recombinant sub-NILs containing smaller introgressions of QTL SC5-1 determined to be involved in the accumulation of sugar via MAS and high throughput SNP genotyping

Jason M. Argyris , Jordi Garcia-Mas , Torben Jahrmann , Marta Fernández , Belén Picó et al.

Cucurbitaceae 2014, Oct 2014, Bay Harbor, United States. 2014

Poster de conférence hal-02799217v1

Flux Balance Analysis metabolic modelling highlights cell energy and redox status as a metabolic driver for anthocyanin accumulation in grapevine GT3 cells under nitrogen starvation

E. Soubeyrand , Sophie S. Colombie , Zhanwu Z. Dai , S. Cluzet , Ghislaine Hilbert et al.

ICP 2014 - XXVIIth International Conference on Polyphenols, Sep 2014, Nagoya, Japan. 2014

Poster de conférence hal-02792547v1

Flux balance analysis highlights cell energy and redox status as metabolic drivers for anthocyanin accumulation in grapevine GT3 cells under nitrogen starvation

Eric Soubeyrand , Sophie Colombie , Zhanwu Dai , Stéphanie Cluzet , Ghislaine Hilbert et al.

Macrowine 2014, Sep 2014, Stellenbosch, South Africa. 2014

Poster de conférence hal-02739299v1

Combining metabolite and enzymatic profiling during tomato fruit development

Mickael M. Maucourt , Camille Bénard , Benoit Biais , Patricia Ballias , Catherine Deborde et al.

8. Journées Scientifiques du Réseau Français de Métabolomique et Fluxomique RFMF, May 2014, Lyon, France. 1 p., 2014

Poster de conférence hal-02793996v1

Hit-Me: high throughput metabolic phenotyping in PHENOME!

Camille Bénard , Duyên D. Prodhomme , Patricia Ballias , Yves Y. Gibon

EPSO Workshop, Jun 2014, Dublin, Ireland. 2014

Poster de conférence hal-02792062v1

Kinetic modelling of the metabolism and compartmentation of sugars during tomato fruit development

Bertrand Beauvoit , Sophie S. Colombie , Christine Nazaret , Marie-Hélène Andrieu , Martine Dieuaide Noubhani et al.

Metabolic Pathway Analysis 2013, Sep 2013, Oxford, United Kingdom. 2013

Poster de conférence hal-02809066v1

Towards a system biology approach of the effect of different levels of nitrogen supply on anthocyanin accumulation in grapevine cell suspensions

Eric Soubeyrand , Sophie S. Colombie , Isabelle Merlin , Ghislaine Hilbert , Bertrand Beauvoit et al.

Plant Biology 2013, Jul 2013, Rhode Island, United States. 2013

Poster de conférence hal-02804615v1

Influence of diurnal factor on compositional changes of tomato fruit and leaf

Camille Benard , Stéphane Bernillon , Sonia Osorio-Algar , Mickael M. Maucourt , Benoit Biais et al.

7. Journées scientifiques du Réseau Français de Métabolomique et Fluxomique, Jun 2013, Amiens, France. 2013

Poster de conférence hal-02805301v1

On-going method developments in Bordeaux Metabolome Facility

Stéphane Bernillon , Benoit Biais , Catherine Deborde , Laetitia Fouillen , Yvon Guntz et al.

Metabolomics 2013 - 9. Annual conference of the Metabolomics Society, Jun 2013, Glasgow, United Kingdom. 2013

Poster de conférence hal-02804388v1

A systems biology approach for the effect of nitrogen supply on anthocyanin accumulation in grapevine cell suspensions

Eric Soubeyrand , Sophie S. Colombie , Isabelle Merlin , Ghislaine Hilbert , Bertrand Beauvoit et al.

7. Journées scientifiques du Réseau Français de Métabolomique et Fluxomique, Jun 2013, Amiens, France. 2013

Poster de conférence hal-02810027v1

Towards a FSPM of bud outgrowth for rosebush: experimental analysis of sugar effect

Jessica Bertheloot , François Barbier , Yves Y. Gibon , Rachid Boumaza , Soulaiman Sakr et al.

7 th International Conference on Functional- Structural Plant Models, Jun 2013, Saarisalkä, Finland. Finnish Society of Forest Science, 2013

Poster de conférence hal-02748594v1

Coordinated methodological developments for plant metabolomics at Bordeaux

Stéphane Bernillon , Benoit Biais , Catherine Deborde , Laetitia Fouillen , Yvon Guntz et al.

7. Journées scientifiques du Réseau Français de Métabolomique et de Fluxomique, Jun 2013, Amiens, France. 2013

Poster de conférence hal-02810760v1

Identification and characterization of two new transcription factors implicated in tomato fruit development

Martine Lemaire Lemaire-Chamley , Julien Assali , Joana Jorly , Guillaume G. Menard , Yves Y. Gibon et al.

COST Action FA1106 "QualityFruit" - 2 nd Annual Conference Fleshy Fruit Development & Ripening, Sep 2013, Chania, Greece. 2013

Poster de conférence hal-02803787v1

Seed abortion of maize under water deficit is linked to a developmental process and not to carbon deprivation

Vincent Oury , Duyên D. Prodhomme , Yves Y. Gibon , Francois F. Tardieu , Olivier Turc

Interdrought IV Conference, Sep 2013, Perth, Australia. 2013

Poster de conférence hal-02745394v1

Compositional changes in fruit pericarp of water-stressed tomato in greenhouse

Annick Moing , Benoit Biais , Mickael M. Maucourt , Camille Benard , Patricia Ballias et al.

Metabolomics 2012, Jun 2012, Washington, United States. 1 p., 2012

Poster de conférence hal-02805488v1

Comparison of metabolomic, proteomic and genomic variability in tomato fruit

Mathilde M. Causse , Jiaxin Xu , Laura Pascual , Yves Y. Gibon , Annick Moing et al.

9. Solanaceae Conference (SOL2012), Aug 2012, Neuchâtel, Switzerland. 2012, SOL 2012: From the Bench to Innovative Applications

Poster de conférence hal-02745839v1

High or low fructose? Consequences for sugar metabolism in peach fruit

Elsa Desnoues , Yves Y. Gibon , Valentina Baldazzi , Veronique Signoret , Michel M. Génard et al.

6. Rosaceous Genomics Conference, Sep 2012, San Michele all’Adige, Italy. 1 p., 2012

Poster de conférence hal-02804340v1

A simple model of tomato metabolism

Bertrand Beauvoit , Benoit Biais , Sophie S. Colombie , Martine Dieuaide , Yves Y. Gibon et al.

International Study Group for Systems Biology, Sep 2012, Ameland, Netherlands. 2012

Poster de conférence hal-02806898v1

Diurnal compositional changes in pericarp of tomato fruit

Camille Bénard , Benoit Biais , Stéphane Bernillon , Mickael M. Maucourt , Sonia Osorio-Algar et al.

Metabomeeting 2011, Sep 2011, Helsinki, Finland. , 1 p., 2011

Poster de conférence hal-02747463v1

A role for Carbon metabolism in leaf growth response to soil water deficit ? An integrated perspective

Irène Hummel , Florent Pantin , Ronan Sulpice , Gaelle Rolland , Maria Piques et al.

20. International Conference on Arabidopsis Research (ICAR), Jun 2009, Edinburgh, United Kingdom. 2009

Poster de conférence hal-02757475v1

Tomato

Yves Gibon , Diane Beckles , Sonia Osorio , Hiroshi Ezura

Journal of Experimental Botany, 76 (21), pp.6201-6203, 2025, ⟨10.1093/jxb/eraf395⟩

N°spécial de revue/special issue hal-05712392v1

Developmental metabolomics to decipher and improve fleshy fruit quality

J. William Allwood , Yves Gibon , Sonia Osorio , Wagner Araújo , José Vallarino et al.

Elsevier. Plant Metabolomics in full swing, 98, 2021, Advances in Botanical Research, 978-0-12-821688-0. ⟨10.1016/bs.abr.2020.09.016⟩

Chapitre d'ouvrage hal-03121970v1

Plant metabolomics and breeding

Olivier Fernandez , Emilie Millet , Renaud Rincent , Sylvain Prigent , Pierre Pétriacq et al.

Elsevier. Plant Metabolomics in full swing, 98, 2021, Advances in Botanical Research, 978-0-12-821688-0. ⟨10.1016/bs.abr.2020.09.020⟩

Chapitre d'ouvrage hal-03150312v1

Untargeted Analysis of Semipolar Compounds by LC-MS and Targeted Analysis of Fatty Acids by GC-MS/GC-FID: From Plant Cultivation to Extract Preparation

Camille Benard , Sébastien Acket , Yannick Rossez , Olivier Fernandez , Thierry Berton et al.

Plant Metabolomics, 1778, Springer Science + Business Media B.V., pp.101-124, 2018, Methods in Molecular Biology, 978-1-4939-7818-2. ⟨10.1007/978-1-4939-7819-9_8⟩

Chapitre d'ouvrage hal-01972166v1

Measurement of Enzyme Activities and Optimization of Continuous and Discontinuous Assays

Camille Benard , Yves Gibon

Current Protocols in Plant Biology, John Wiley and Sons Inc, 2016, 9781119077367. ⟨10.1002/cppb.20003⟩

Chapitre d'ouvrage hal-01605777v1

Analysis of enzyme activities

Guillaume G. Menard , Benoit Biais , Duyên D. Prodhomme , Patricia Ballias , Yves Y. Gibon

Plant Metabolic Flux Analysis : Methods and Protocols, 1090, Springer Science+Business Media, 2014, Methods in Molecular Biology, 978-1-62703-687-0. ⟨10.1007/978-1-62703-688-7_15⟩

Chapitre d'ouvrage hal-02799530v1

High-throughput biochemical phenotyping for plants

Guillaume G. Menard , Benoit Biais , Duyên D. Prodhomme , Patricia Ballias , Johann J. Petit et al.

Metabolomics coming of age with its technological diversity, 67 (1ère éd.), Elsevier Ltd, 693 p., 2013, Advances in Botanical Research, 978-0-12-397922-3. ⟨10.1016/B978-0-12-397922-3.00009-5⟩

Chapitre d'ouvrage hal-02811316v1

Aspects of experimental design for plant metabolomics experiments and guidelines for growth of plant material

Yves Y. Gibon , Dominique D. Rolin

Plant metabolomics : Methods and protocols, 860, Springer Science+Business Media, 340 p., 2012, Methods in Molecular Biology, 978-1-61779-593-0. ⟨10.1007/978-1-61779-594-7⟩

Chapitre d'ouvrage hal-02803292v1

Aspects of experimental design for plant metabolomics experiments and guidelines for growth of plant material

Yves Gibon , Dominique Rolin

Plant metabolomics : Methods and protocols, 860, Springer Science+Business Media, 340 p., 2012, Methods in Molecular Biology, 978-1-61779-593-0

Chapitre d'ouvrage hal-02928423v1

New opportunities in metabolomics biochemical phenotyping for plant systems biology

Yves Y. Gibon , Dominique D. Rolin , Catherine Deborde , Stéphane Bernillon , Annick Moing

Metabolomics, InTech, 2012, 978-953-51-0046-1

Chapitre d'ouvrage hal-02804473v1

Enzyme Kinetics: Theory and Practice

Alistair Rogers , Yves Gibon

Plant Metabolic Networks, Springer New York, pp.71-103, 2009, ⟨10.1007/978-0-387-78745-9_4⟩

Chapitre d'ouvrage hal-03321610v1

Predictive metabolomics to decipher plant eco-evolutive tendencies and physiological traits

Cathleen Mirande-Ney , Santiago Trueba , Adam Rochepeau , Régis Burlett , Pierre Pétriacq et al.

2026

Pré-publication, Document de travail hal-05712346v1

Branching Varies with Light Limitation Scenarios in relation with Changes in Carbon Source-Sink Dynamics

Anne Schneider , Frédéric Boudon , Sabine Demotes-Mainard , Lydie Ledroit , Maria-Dolores Perez-Garcia et al.

2026

Pré-publication, Document de travail hal-05519473v1

From fruit growth to ripening in plantain: a careful balance between carbohydrate synthesis and breakdown

N.A. Campos , Sophie Colombie , Annick Moing , Cédric Cassan , D. Amah et al.

2021

Pré-publication, Document de travail hal-03659204v1

Combinatory therapy targeting mitochondrial oxidative phosphorylation improves efficacy of IDH mutant inhibitors in acute myeloid leukemia

Lucille Stuani , Marie Sabatier , Feng Wang , Nathalie Poupin , Claudie Bosc et al.

2020

Pré-publication, Document de travail hal-02935177v1

Matériel et Méthode thèse Léa ROCH (VF)

Léa Roch , Catherine Deborde , Annick Moing , Yves Gibon

2016

Pré-publication, Document de travail hal-04760180v1

Association mapping across numerous traits reveals patterns of functional variation in maize

Jason Wallace , Peter Bradbury , Nengyi Zhang , Yves Y. Gibon , Mark Stitt et al.

2014

Pré-publication, Document de travail (working paper) hal-02797919v1

Présentation de l'unité Biologie du fruit et pathologie (BFP)

Coline Verneau , Aurélien Marquot , Yves Gibon

2024

Vidéo hal-05421073v1

Presentation of BFP research unit

Coline Verneau , Aurélien Marquot , Yves Gibon

2024

Vidéo hal-05421106v1

Chargement...

Yves Gibon

Publications

Publications

Insights into physiological responses of different grapevine varieties to Flavescence Dorée infection: an integrated approach

Comparative constraint-based modelling of fruit development across species highlights nitrogen metabolism in the growth- defence trade-off

Unraveling Brassica napus leaf metabolic diversity: leveraging machine learning for agronomic trait prediction

Combining phenotypic, metabolome and proteome data to study maize response to a mild nitrogen deficit

Modeling berry growth and quality formation at multiple levels

Effet de la sécheresse sur l'expression des symptômes foliaires de l'esca

An integrated fruit model toolkit: combining fruit biophysical processes with central carbon metabolism

An overview of NMR applications in metabolite profiling of small molecules for plant metabolism studies

Using metabolomic data to predict Maize yield

Dissecting G×E and QTL×E of maize yield in contrasting scenarios of light, heat and water deficit

Dynamics of bud metabolites during dormancy in sweet cherry genotypes with contrasted chilling requirements

Peptide filtering differently affects the performances of XIC-based quantifcation methods

Integrative and predictive biology outside the plant: linking computational tools to fleshy fruit systems

Integration of “omics” data provides tools for understanding effects of variable nitrogen (N) and sulphur (S) supply during wheat grain development

Is failure of reproductive development under water or heat stress due to C shortage ?

Flux balance modelling in developing tomato fruit: the respiration climacteric as an emergent property

Leaf marker metabolites for low nitrogen stress in maize

Consequences of high temperatures and drought on peach fruit production strongly depends on their period of occurence

Investigating plant performance using metabolic phenotyping

Using metabolomic approaches and modelling of central metabolic to study fleshy fruit quality

Investigating drought resistance using metabolic phenotyping

Cellular and subcellular metabolomics reveal changes during tomato leaf development

High or low fructose? Consequences for sugar metabolism in peach fruit

Role of plant carbon status in yield components responses to elevated temperatures in microvine

Fruit systems biology

Fruit systems biology

Dynamique de métabolites en relation avec l’état de dormance des bougeons floraux chez le cerisier doux

Genomic studies on a highly complex trait in Sweet Cherry: tolerance to rain-induced fruit

Using developmental and diurnal compositional changes of tomato to study metabolism

Genetic architecture of quantitative responses to <em>Turnip Mosaic Virus</em> (TuMV) infection trait loci in Arabidopsis thaliana through evaluation of biomass, viral accumulation, and metabolic profiles

Modelling fluxes and metabolic network analysis of developing tomato fruits

Fruit quality in sweet cherry: from QTLs to candidate genes

La métabolomique : un outil de la génomique fonctionnelle au service de la biologie des systèmes

Association mapping fo quantitative responses to Turnip Mosaic Virus (TuMV) infection trait loci in Arabidopsis thaliana through evaluation of biomass, viral accumulation, and metabolic profiles

Metabolic Phenotyping, in Quest of Serendipity

Fruity data, juicy concepts

Old school analytical biochemistry in the era of systems biology

Diurnal compositional changes of tomato fruit and leaf

Association mapping of quantitative responses to <em>Turnip mosaic virus</em> (TuMV) infection trait loci in <em>Arabidopsis thaliana</em> through evaluation of biomass, viral accumulation, and metabolic profiles

Réseaux métaboliques

Combining systems biology, genome resequencing and MAGIC population to decipher the genetic variation of tomato fruit quality

Impact of the tomato fruit temperature on its growth and composition

Metabolomics data integration in tomato plant-fruit systems biology

A multi-Ievel omic approach of tomato fruit quality

Compositional changes of tomato seeds during development and maturation

Ozone-induced detoxification processes in three <em>populus</em> genotypes: metabolomic and molecular approaches

Genetic diversity, inheritance and integration of multi-level omic data in tomato fruit

Régulation de la synthèse des protéines de réserve du grain de blé en réponse à la disponibilité en azote et soufre

Tools and applications in plant metabolomics at Bordeaux Metabolome Fluxome Facility (PMFB; http://www.bordeaux.inra.fr/umr619/NMR.htm)

The diversitiy of Oenococcus oeni

Integrated approaches for deciphering the mechanisms controlling fruit nutritional quality in tomato

Variation journalière de la composition métabolique de fruit de tomate en cours de maturation

Fast and cheap metabolic phenotyping in plants using microplate technology

A role for carbon metabolism in plant growth response to soil water deficit? An integrated perspective

Fast and cheap metabolic phenotyping for functional genomics

Plant metabolomics at Bordeaux Metabolome-Fluxome Facility. Tools and applications at PMFB

Phenotypic variability among wild Vitis species: a tool to study some mechanisms underlying berry development and composition

Intra and interspecific biochemical phenotyping of Vitis

C metabolism and plant growth under water deficit: chicken and egg

Biochemical phenotyping of Vitis by 1H-NMR profiling and targeted enzymatic analysis

NMR profiling and more for the characterization of melon genetic resources and melon fruit physiology

Applications and tools in plant metabolomics at Bordeaux Metabolome-Fluxome Facility

Fast and cheap metabolic phenotyping in plants using microplate technology

Ecophysiology meets metabolic profiling

Carbon budget, protein metabolism and growth: an integrative untargeted approach in Arabidopsis thaliana leaves

Xeml Lab - Give old data a new life

Ecophysiology meets metabolic profiling: an integrative approach of Arabidopsis thaliana responses to drought

Hyperprolinemia in leaf tissues of C3 plants subjected to osmotic upshift could reflect metabolic disorders at the mitochondrial level

Damages to oxidative properties of mitochondria from leaf of tissues of C3 plants could be assessed by the amount of proline accumulated under osmotic stress

Assessment of phenotypic trait plasticity in the oilseed Camelina sativa using integrated early-stage abiotic stress and field studies

Molecular and physiological characterization of two sunflower near-isogenic lines with contrasting haplotypes for leaf senescence

Metabolic profiling of three Brachypodium species reveals different adaptive strategies to ammonium stress

Interspecies predictions of growth traits from quantitative transcriptome data acquired during fruit development

The rates of starch depletion and hydraulic failure both play a role in drought-induced seedling mortality

Natural variation in the adjustment of primary metabolism determines ammonium tolerance in the model grass Brachypodium distachyon

Genetic control of abiotic stress-related specialized metabolites in sunflower

Identification of metabolic and protein markers representative of the impact of mild nitrogen deficit on agronomic performance of maize hybrids