Yves Gibon

323
Documents

Publications

Publications

Interspecies predictions of growth traits from quantitative transcriptome data acquired during fruit development

Chloé Beaumont , Sylvain Prigent , Kentaro Mori , Pierre Baldet , Joana Jorly et al.
Journal of Experimental Botany, 2025, pp.eraf122. ⟨10.1093/jxb/eraf122⟩
Article dans une revue hal-05037526 v1
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Genetic control of abiotic stress-related specialized metabolites in sunflower

Marco Moroldo , Nicolas Blanchet , Harold Duruflé , Stéphane Bernillon , Thierry Berton et al.
BMC Genomics, 2024, 25 (1), pp.199. ⟨10.1186/s12864-024-10104-9⟩
Article dans une revue hal-04468891 v1

Deciphering molecular events behind Systemin-induced resistance to Botrytis cinerea in tomato plants

Julia Pastor-Fernández , Neus Sanmartín , Maria Manresa-Grao , Cédric Cassan , Pierre Pétriacq et al.
Journal of Experimental Botany, 2024, 75 (13), pp.4111-4127. ⟨10.1093/jxb/erae146⟩
Article dans une revue hal-04612162 v1
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Identification of metabolic and protein markers representative of the impact of mild nitrogen deficit on agronomic performance of maize hybrids

Maria Urrutia , Mélisande Blein-Nicolas , Olivier Fernandez , Stéphane Bernillon , Mickaël Maucourt et al.
Metabolomics, 2024, 20 (6), pp.128. ⟨10.1007/s11306-024-02186-z⟩
Article dans une revue hal-04799829 v1
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The rates of starch depletion and hydraulic failure both play a role in drought-induced seedling mortality

Santiago Trueba , Noelia González Muñoz , Régis Burlett , Laurent J Lamarque , Yves Gibon et al.
Annals of Forest Science, 2024, 81 (1), pp.27. ⟨10.1186/s13595-024-01246-7⟩
Article dans une revue hal-04667578 v1
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Integrated analysis of metabolites and enzyme activities reveals the plasticity of central carbon metabolism in grape (<i>Vitis vinifera</i> cv. Cabernet Sauvignon) berries under carbon limitation

Qian Tong , Yongjian Wang , Regina Feil , John E Lunn , Xiaobo Xu et al.
Horticulture research, 2024, 12 (4), pp.uhae363. ⟨10.1093/hr/uhae363⟩
Article dans une revue hal-04997970 v1
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Multi-regulated GDP-l-galactose phosphorylase calls the tune in ascorbate biosynthesis

Pierre Baldet , Kentaro Mori , Sylvain Prigent , Guillaume Decros , Bertrand Beauvoit et al.
Journal of Experimental Botany, 2024, 75 (9), pp.2631-2643. ⟨10.1093/jxb/erae032/7607105⟩
Article dans une revue hal-04530669 v1

Different wheat loci are associated to heritable free asparagine content in grain grown under different water and nitrogen availability

Mélanie Lavoignat , Cédric Cassan , Pierre Pétriacq , Yves Gibon , Emmanuel Heumez et al.
TAG Theoretical and Applied Genetics, 2024, 137 (2), pp.46. ⟨10.1007/s00122-024-04551-x⟩
Article dans une revue hal-04461297 v1
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Metabolite quantification data based on 1H-NMR profiling of eggplant or pepper fruit during its development

Léa Roch , Catherine Deborde , Daniel Jacob , Anaïs Clavé , Marguerite Batsale et al.
BMC Research Notes, 2024, 17 (1), pp.337. ⟨10.1186/s13104-024-06996-1⟩
Article dans une revue hal-04800078 v1

Ecological and metabolic implications of the nurse effect of Maihueniopsis camachoi in the Atacama Desert

Francisca Díaz , Thomas Dussarrat , Gabriela Carrasco-Puga , Sophie Colombie , Sylvain Prigent et al.
New Phytologist, 2024, 241 (3), pp.1074-1087. ⟨10.1111/nph.19415⟩
Article dans une revue hal-04514679 v1
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Détermination des volumes cellulaires et subcellulaires par analyse d’images de microscopie : Comment estimer la vitesse de croissance de cellules du fruit ?

Marie-Hélène Andrieu , Catherine Cheniclet , Martine Dieuaide-Noubhani , Bertrand Beauvoit , Yves Gibon
NOV'AE, 2023, 14, pp.1-15. ⟨10.17180/novae-2023-NO-art14⟩
Article dans une revue hal-04575735 v1
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Blue light promotes ascorbate synthesis by deactivating the PAS/LOV photoreceptor that inhibits GDP- l -galactose phosphorylase

Céline Bournonville , Kentaro Mori , Paul Deslous , Guillaume Decros , Tim Blomeier et al.
The Plant cell, 2023, 35 (7), pp.2615-2634. ⟨10.1093/plcell/koad108⟩
Article dans une revue hal-04083263 v1
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GABA shunt pathway is stimulated in response to early defoliation-induced carbohydrate limitation in Mandarin fruits

Radia Lourkisti , Sandrine Antoine , Olivier Pailly , François Luro , Yves Gibon et al.
Heliyon, 2023, 9 (4), pp.e15573. ⟨10.1016/j.heliyon.2023.e15573⟩
Article dans une revue hal-04176065 v1
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Enzyme‐based kinetic modelling of ASC–GSH cycle during tomato fruit development reveals the importance of reducing power and ROS availability

Guillaume Decros , Thomas Dussarrat , Pierre Baldet , Cédric Cassan , Cécile Cabasson et al.
New Phytologist, 2023, ⟨10.1111/nph.19160⟩
Article dans une revue hal-04178513 v1
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Multi-omics quantitative data of tomato fruit unveils regulation modes of least variable metabolites

Annick Moing , Thierry Berton , Léa Roch , Salimata Diarrassouba , Stéphane Bernillon et al.
BMC Plant Biology, 2023, 23 (365), ⟨10.1186/s12870-023-04370-0⟩
Article dans une revue hal-04183193 v1
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The potential of integrative phenomics to harness underutilized crops for improving stress resilience

Dominik K Großkinsky , J.-D. Faure , Yves Gibon , Richard P Haslam , Björn Usadel et al.
Frontiers in Plant Science, 2023, 14, pp.1216337. ⟨10.3389/fpls.2023.1216337⟩
Article dans une revue hal-04215355 v1
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A low carbon balance triggers Microvine inflorescence abscission at high temperatures

Nathalie Luchaire , Laurent Torregrosa , Yves Gibon , Markus Rienth , Charles Romieu et al.
Frontiers in Horticulture, 2023, 2, pp.1267429. ⟨10.3389/fhort.2023.1267429⟩
Article dans une revue hal-04539592 v1

Advances in fruit development and ripening

Sonia Osorio , Fabrizio Costa , Yves Gibon , Björn Usadel , Ariel Vicente
Journal of Experimental Botany, 2023, 74 (20), pp.6205-6206. ⟨10.1093/jxb/erad379⟩
Article dans une revue hal-04384872 v1
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Differences between tree stem CO 2 efflux and O 2 influx rates cannot be explained by internal CO 2 transport or storage in large beech trees

Juliane Helm , Roberto L Salomón , Boaz Hilman , Jan Muhr , Alexander Knohl et al.
Plant, Cell and Environment, 2023, Online first, ⟨10.1111/pce.14614⟩
Article dans une revue hal-04121662 v1
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Comparative constraint‐based modelling of fruit development across species highlights nitrogen metabolism in the growth‐defence trade‐off

Sophie Colombie , Sylvain Prigent , Cédric Cassan , Ghislaine Hilbert‐masson , Christel Renaud et al.
The Plant Journal, 2023, ⟨10.1111/tpj.16409⟩
Article dans une revue hal-04185814 v1
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High-throughput plant phenotyping: a role for metabolomics?

Robert Hall , John D’auria , Antonio Silva Ferreira , Yves Gibon , Dariusz Kruszka et al.
Trends in Plant Science, 2022, 27 (6), pp.549-563. ⟨10.1016/j.tplants.2022.02.001⟩
Article dans une revue (article de synthèse) hal-03604241 v1
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Protocole de marquage à l’azote 15N de fruits de tomate issus de plantes cultivées en condition standard

Marie-Hélène Andrieu , Isabelle Atienza , Cédric Cassan , Anne Marmagne , Daniel Just et al.
NOV'AE, 2022, 05, pp.1-11. ⟨10.17180/novae-2022-NO-art05⟩
Article dans une revue hal-03766575 v1
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Comparative Analysis of Antioxidant Accumulation under Cold Acclimation, Deacclimation and Reacclimation in Winter Wheat

Gabija Vaitkevičiūtė , Andrius Aleliūnas , Yves Gibon , Rita Armonienė
Plants, 2022, 11 (21), pp.2818. ⟨10.3390/plants11212818⟩
Article dans une revue hal-03915215 v1

Plant sugar metabolism, transport and signalling in challenging environments

Thomas Nägele , Yves Gibon , Rozenn Le Hir
Physiologia Plantarum, 2022, 174 (5), ⟨10.1111/ppl.13768⟩
Article dans une revue hal-03773295 v1
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The effect of cold acclimation, deacclimation and reacclimation on metabolite profiles and freezing tolerance in winter wheat

Gabija Vaitkevičiūtė , Andrius Aleliūnas , Yves Gibon , Rita Armonienė
Frontiers in Plant Science, 2022, 13, pp.959118. ⟨10.3389/fpls.2022.959118⟩
Article dans une revue hal-03768019 v1
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Predictive metabolomics of multiple Atacama plant species unveils a core set of generic metabolites for extreme climate resilience

Thomas Dussarrat , Sylvain Prigent , Claudio Latorre , Stéphane Bernillon , Amélie Flandin et al.
New Phytologist, 2022, 234 (5), pp.1614-1628. ⟨10.1111/nph.18095⟩
Article dans une revue hal-03626433 v1

Integrated multi-omic analysis of fruit maturity identifies biomarkers with drastic abundance shifts spanning the harvest period in ‘Royal Gala’ apple

Laurie Favre , Donald Hunter , Erin O’donoghue , Zoe Erridge , Nathanael Napier et al.
Postharvest Biology and Technology, 2022, 193, pp.112059. ⟨10.1016/j.postharvbio.2022.112059⟩
Article dans une revue hal-04181587 v1
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Grape ASR Regulates Glucose Transport, Metabolism and Signaling

Jonathan Parrilla , Anna Medici , Cécile Gaillard , Jérémy Verbeke , Yves Gibon et al.
International Journal of Molecular Sciences, 2022, 23 (11), pp.6194. ⟨10.3390/ijms23116194⟩
Article dans une revue hal-03702354 v1

MetaPhenomics: quantifying the many ways plants respond to their abiotic environment, using light intensity as an example

Hendrik Poorter , Xinyou Yin , Nouf Alyami , Yves Gibon , Thijs L Pons
Plant and Soil, 2022, online first, ⟨10.1007/s11104-022-05391-8⟩
Article dans une revue hal-03702403 v1
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Impaired cell growth under ammonium stress explained by modeling the energy cost of vacuole expansion in tomato leaves

Théo Poucet , Bertrand Beauvoit , María Begoña González-Moro , Cecile Cabasson , Pierre Pétriacq et al.
The Plant Journal, 2022, 112 (4), pp.1014-1028. ⟨10.1111/tpj.15991⟩
Article dans une revue hal-03855200 v1
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From fruit growth to ripening in plantain: a careful balance between carbohydrate synthesis and breakdown

Nadia Campos , Sophie Colombie , Annick Moing , Cedric Cassan , Delphine Amah et al.
Journal of Experimental Botany, 2022, 73 (14), pp.4832-4849. ⟨10.1093/jxb/erac187⟩
Article dans une revue hal-03675840 v1

Ammonium supply induces differential metabolic adaptive responses in tomato according to leaf phenological stage

Théo Poucet , María Begoña González-Moro , Cecile Cabasson , Bertrand Beauvoit , Yves Gibon et al.
Journal of Experimental Botany, 2021, 72 (8), pp.3185-3199. ⟨10.1093/jxb/erab057⟩
Article dans une revue hal-03179910 v1
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Metabolic Profile Discriminates and Predicts Arabidopsis Susceptibility to Virus under Field Conditions

Bernadette Rubio , Olivier Fernandez , Patrick Cosson , Thierry Berton , Mélodie Caballero et al.
Metabolites, 2021, 11 (4), pp.230. ⟨10.3390/metabo11040230⟩
Article dans une revue hal-03197197 v1
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Leaf metabolomic data of eight sunflower lines and their sixteen hybrids under water deficit

Thierry Berton , Stéphane Bernillon , Olivier Fernandez , Harold Duruflé , Amélie Flandin et al.
OCL Oilseeds and fats crops and lipids, 2021, 28, 42 - 6 p. ⟨10.1051/ocl/2021029⟩
Article dans une revue (data paper) hal-03321074 v1
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Maize metabolome and proteome responses to controlled cold stress partly mimic early‐sowing effects in the field and differ from those of Arabidopsis

Maria Urrutia , Melisande Blein-Nicolas , Sylvain Prigent , Stéphane Bernillon , Catherine Deborde et al.
Plant, Cell and Environment, 2021, 44 (5), pp.1504-1521. ⟨10.1111/pce.13993⟩
Article dans une revue hal-03107184 v1

The NAD Kinase Slr0400 Functions as a Growth Repressor in Synechocystis sp. PCC 6803

Yuuma Ishikawa , Cedric Cassan , Aikeranmu Kadeer , Koki Yuasa , Nozomu Sato et al.
Plant and Cell Physiology, 2021, 62 (4), pp.668-677. ⟨10.1093/pcp/pcab023⟩
Article dans une revue hal-03182729 v1
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The Evolution of Leaf Function during Development Is Reflected in Profound Changes in the Metabolic Composition of the Vacuole

Alice Destailleur , Théo Poucet , Cecile Cabasson , Ana Paula Alonso , Jean-Christophe Cocuron et al.
Metabolites, 2021, 11 (12), pp.848. ⟨10.3390/metabo11120848⟩
Article dans une revue hal-03505133 v1

Overproduction of ascorbic acid impairs pollen fertility in tomato

Paul Deslous , Céline Bournonville , Guillaume Decros , Yoshihiro Okabe , Jean-Philippe Mauxion et al.
Journal of Experimental Botany, 2021, 72 (8), pp.3091-3107. ⟨10.1093/jxb/erab040⟩
Article dans une revue hal-03152478 v1
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Mitochondrial metabolism supports resistance to IDH mutant inhibitors in acute myeloid leukemia

Lucille Stuani , Marie Sabatier , Estelle Saland , Guillaume Cognet , Nathalie Poupin et al.
Journal of Experimental Medicine, 2021, 218 (5), pp.e20200924. ⟨10.1084/jem.20200924⟩
Article dans une revue hal-03563454 v1
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Thioredoxin m overexpression in chloroplasts alters carbon and nitrogen partitioning in tobacco plants

María Ancín , Luis Larraya , Igor Florez-Sarasa , Camille Bénard , Alicia Fernández-San Millán et al.
Journal of Experimental Botany, 2021, 72 (13), pp.4949-4964. ⟨10.1093/jxb/erab193⟩
Article dans une revue hal-03224310 v1

Grapevines under drought do not express esca leaf symptoms

Giovanni Bortolami , Gregory Gambetta , Cédric Cassan , Silvina Dayer , Elena Farolfi et al.
Proceedings of the National Academy of Sciences of the United States of America, 2021, 118 (43), pp.e2112825118. ⟨10.1073/pnas.2112825118⟩
Article dans une revue hal-03474970 v1

Modelling predicts tomatoes can be bigger and sweeter if biophysical factors and transmembrane transports are fine‐tuned during fruit development

Jinliang Chen , Bertrand Beauvoit , Michel Génard , Sophie Colombie , Annick Moing et al.
New Phytologist, 2021, 230, pp.1489-1502. ⟨10.1111/nph.17260⟩
Article dans une revue hal-03152042 v1

Another Tale from the Harsh World: How Plants Adapt to Extreme Environments

Thomas Dussarrat , Guillaume Decros , Francisca P , Yves Gibon , Claudio Latorre et al.
Annual Plant Reviews Online, 2021, 4 (2), pp.551-603. ⟨10.1002/9781119312994.apr0758⟩
Article dans une revue hal-03320839 v1

Fruit setting rewires central metabolism via gibberellin cascades

Yoshihito Shinozaki , Bertrand Beauvoit , Masaru Takahara , Shuhei Hao , Kentaro Ezura et al.
Proceedings of the National Academy of Sciences of the United States of America, 2020, 117 (38), pp.23970-23981. ⟨10.1073/pnas.2011859117⟩
Article dans une revue hal-02946501 v1
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Making experimental data tables in the life sciences more FAIR: a pragmatic approach

Daniel Jacob , Romain David , Sophie Aubin , Yves Gibon
GigaScience, 2020, 9 (12), pp.giaa144. ⟨10.1093/gigascience/giaa144⟩
Article dans une revue hal-02883355 v4

Regulation of carbon metabolism in two maize sister lines contrasted for chilling tolerance

Catalina Duran Garzon , Michelle Lequart-Pillon , Carsten Rautengarten , Solène Bassard , Hélène Sellier-Richard et al.
Journal of Experimental Botany, 2020, 71 (1), pp.356-369. ⟨10.1093/jxb/erz421⟩
Article dans une revue hal-02620164 v1
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Metabolomics to Exploit the Primed Immune System of Tomato Fruit.

Estrella Luna , Amélie Flandin , Cédric Cassan , Sylvain Prigent , Chloé Chevanne et al.
Metabolites, 2020, 10 (3), pp.96. ⟨10.3390/metabo10030096⟩
Article dans une revue hal-02629273 v1
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Transcriptomic and proteomic data in developing tomato fruit

Isma Belouah , Camille Bénard , Alisandra Denton , Melisande Blein-Nicolas , Thierry Balliau et al.
Data in Brief, 2020, 28, pp.1-8. ⟨10.1016/j.dib.2019.105015⟩
Article dans une revue (data paper) hal-02539392 v1
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Model-assisted comparison of sugar accumulation patterns in ten fleshy fruits highlights differences between herbaceous and woody species

Coffi Belmys Cakpo , Gilles Vercambre , Valentina Baldazzi , Léa Roch , Zhanwu Dai et al.
Annals of Botany, 2020, 126 (3), pp.455-470. ⟨10.1093/aob/mcaa082⟩
Article dans une revue hal-02749663 v1
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Biomass composition explains fruit relative growth rate and discriminates climacteric from non-climacteric species

Léa Roch , Sylvain Prigent , Holger Klose , Coffi-Belmys Cakpo , Bertrand Beauvoit et al.
Journal of Experimental Botany, 2020, 71 (19), pp.5823-5836. ⟨10.1093/jxb/eraa302⟩
Article dans une revue hal-02904041 v1
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Adenine Nucleotide and Nicotinamide Adenine Dinucleotide Measurements in Plants

Youjun Zhang , Ina Krahnert , Antje Bolze , Yves Gibon , Alisdair Fernie
Current Protocols in Plant Biology, 2020, 5 (3), pp.e20115. ⟨10.1002/cppb.20115⟩
Article dans une revue hal-02926938 v1
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Omics data reveal putative regulators of einkorn grain protein composition under sulfur deficiency

Titouan Bonnot , Pierre Martre , Victor Hatte , Mireille Dardevet , Philippe Leroy et al.
Plant Physiology, 2020, 183 (2), pp.501-516. ⟨10.1104/pp.19.00842⟩
Article dans une revue hal-02553742 v1
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Identification of the Arabidopsis calmodulin-dependent NAD+ kinase that sustains the elicitor-induced oxidative burst

Elisa Dell'Aglio , Cécile Giustini , Alexandra Kraut , Yohann Couté , Alex Costa et al.
Plant Physiology, 2019, 181 (4), pp.1449-1458. ⟨10.1104/pp.19.00912⟩
Article dans une revue hal-02361156 v1
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Get the Balance Right: ROS Homeostasis and Redox Signalling in Fruit

Guillaume Decros , Pierre Baldet , Bertrand Beauvoit , Rebecca Stevens , Amélie Flandin et al.
Frontiers in Plant Science, 2019, 10, pp.1-16. ⟨10.3389/fpls.2019.01091⟩
Article dans une revue (article de synthèse) hal-02619141 v1
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Central Metabolism Is Tuned to the Availability of Oxygen in Developing Melon Fruit

Kentaro Mori , Bertrand Beauvoit , Benoit Biais , Maxime Chabane , J. William Allwood et al.
Frontiers in Plant Science, 2019, 10, pp.594. ⟨10.3389/fpls.2019.00594⟩
Article dans une revue hal-02621412 v1
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Peptide filtering differently affects the performances of XIC-based quantification methods

Isma Belouah , Melisande Blein-Nicolas , Thierry Balliau , Yves Gibon , Michel Zivy et al.
Journal of Proteomics, 2019, 193, pp.131-141. ⟨10.1016/j.jprot.2018.10.003⟩
Article dans une revue hal-02327322 v1
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Omeprazole Treatment Enhances Nitrogen Use Efficiency Through Increased Nitrogen Uptake and Assimilation in Corn.

Michael James van Oosten , Emilia Dell'Aversana , Alessandra Ruggiero , Valerio Cirillo , Yves Gibon et al.
Frontiers in Plant Science, 2019, 10, pp.1507. ⟨10.3389/fpls.2019.01507⟩
Article dans une revue hal-02628214 v1
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Regulation of Pyridine Nucleotide Metabolism During Tomato Fruit Development Through Transcript and Protein Profiling.

Guillaume Decros , Bertrand Beauvoit , Sophie Colombie , Cecile Cabasson , Stéphane Bernillon et al.
Frontiers in Plant Science, 2019, 10, pp.1201. ⟨10.3389/fpls.2019.01201⟩
Article dans une revue hal-02620533 v1

Modeling Protein Destiny in Developing Fruit

Isma Belouah , Christine Nazaret , Pierre Pétriacq , Sylvain Prigent , Camille Bénard et al.
Plant Physiology, 2019, 180 (3), pp.1709-1724. ⟨10.1104/pp.19.00086⟩
Article dans une revue hal-02327302 v1
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Metabolomic characterization of sunflower leaf allows discriminating genotype groups or stress levels with a minimal set of metabolic markers

Olivier Fernandez , Maria Urrutia , Thierry Berton , Stéphane Bernillon , Catherine Deborde et al.
Metabolomics, 2019, 15 (4), pp.56. ⟨10.1007/s11306-019-1515-4⟩
Article dans une revue hal-02487236 v1
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Fruit salad in the lab: comparing botanical species to help deciphering fruit primary metabolism

Léa Roch , Zhanwu Dai , Eric Gomes , Stéphane Bernillon , Jiaojiao Wang et al.
Frontiers in Plant Science, In press, 10, pp.836. ⟨10.3389/fpls.2019.00836⟩
Article dans une revue (article de synthèse) hal-02540096 v1

Integrating proteomics and enzymatic profiling to decipher seed metabolism affected by temperature in seed dormancy and germination.

Qiong Xia , Ponnaiah Maharajah , Gwendal Cueff , Loic Rajjou , Duyên Prodhomme et al.
Plant Science, 2018, 269, pp.118-125. ⟨10.1016/j.plantsci.2018.01.014⟩
Article dans une revue hal-02623778 v1

CORRECTION: Exploiting the Genetic Diversity of Maize Using a Combined Metabolomic, Enzyme Activity Profiling, and Metabolic Modelling Approach to Link Leaf Physiology to Kernel Yield.

Rafael Canas-Pendon Canas , Zhazira Yesbergenova-Cuny , Margaret Simons , Fabien Chardon , Patrick P. Armengaud et al.
The Plant cell, 2018, 30, pp.946. ⟨10.1105/tpc.18.00273⟩
Article dans une revue hal-02624574 v1

Putting primary metabolism into perspective to obtain better fruits

Bertrand Beauvoit , Isma Belouah , Nadia Bertin , Coffi Belmys Cakpo , Sophie Colombie et al.
Annals of Botany, In press, 122 (1), pp.1-21. ⟨10.1093/aob/mcy057⟩
Article dans une revue hal-02539159 v1
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1H-NMR metabolomic profiling reveals a distinct metabolic recovery response in shoots and roots of temporarily drought-stressed sugar beets.

Rita Wedeking , Mickael Maucourt , Catherine Deborde , Annick Moing , Yves Gibon et al.
PLoS ONE, 2018, 13 (5), pp.e0196102. ⟨10.1371/journal.pone.0196102⟩
Article dans une revue hal-02622637 v1

Differences in Blossom-end Rot Resistance in Tomato Cultivars is Associated with Total Ascorbate rather than Calcium Concentration in the Distal End Part of Fruits <i>per se</i>

Rached Moalla , Pierre Baldet , Yves Gibon , Chiaki Matsukura , Toru Ariizumi et al.
Horticulture Journal, 2018, 87 (3), pp.372-381. ⟨10.2503/hortj.OKD-150⟩
Article dans une revue hal-02621909 v1

Corrigendum to "Integrating proteomics and enzymatic profiling to decipher seed metabolism affected by temperature in seed dormancy and germination" [Plant Sci. 269 (2018) 118-125]

Qiong Xia , Maharajah Ponnaiah , Gwendal Cueff , Loic Rajjou , Duyên Prodhomme et al.
Plant Science, 2018, 269, pp.118-125. ⟨10.1016/j.plantsci.2018.05.002⟩
Article dans une revue hal-02621883 v1
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Dissection of the molecular bases of genotype x environment interactions: a study of phenotypic plasticity of Saccharomyces cerevisiae in grape juices

Emilien Peltier , Vikas Sharma , Maria Marti Raga , Miguel Roncoroni , Margaux Bernard et al.
BMC Genomics, 2018, 19 (1), pp.1-20. ⟨10.1186/s12864-018-5145-4⟩
Article dans une revue hal-02620975 v1
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Wine yeast phenomics: A standardized fermentation method for assessing quantitative traits of Saccharomyces cerevisiae strains in enological conditions

Emilien Peltier , Margaux Bernard , Marine Trujillo , Duyên Prodhomme , Jean-Christophe Barbe et al.
PLoS ONE, 2018, 13 (1), pp.1-23. ⟨10.1371/journal.pone.0190094⟩
Article dans une revue hal-02622804 v1
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Constraint-based modeling highlights cell energy, redox status and α-ketoglutarate availability as metabolic drivers for anthocyanin accumulation in grape cells under nitrogen limitation

Eric Soubeyrand , Sophie Colombié , Bertrand Beauvoit , Zhanwu Dai , Stéphanie Cluzet et al.
Frontiers in Plant Science, 2018, 9, pp.1-14. ⟨10.3389/fpls.2018.00421⟩
Article dans une revue hal-02533089 v1
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Identification and functional study of a mild allele of SlDELLA gene conferring the potential for improved yield in tomato

Yoshihito Shinozaki , Kentaro Ezura , Jianhong Hu , Yoshihiro Okabe , Camille Benard et al.
Scientific Reports, In press, 8 (1), pp.12043. ⟨10.1038/s41598-018-30502-w⟩
Article dans une revue hal-02536736 v1
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Metabotyping of 30 maize hybrids under early-sowing conditions reveals potential marker-metabolites for breeding

Nadia Lamari , Vanessa Zhendre , Maria Urrutia , Stéphane Bernillon , Mickael Maucourt et al.
Metabolomics, 2018, 14 (10), pp.132. ⟨10.1007/s11306-018-1427-8⟩
Article dans une revue hal-02539641 v1
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Comparative metabolomics and glycolysis enzyme profiling of embryogenic and nonembryogenic grape cells

Jonathan Parrilla , Cécile Gaillard , Jérémy Verbeke , Mickael Maucourt , Radoslav Aleksandrov et al.
FEBS Open Bio, 2018, 8 (5), pp.784 - 798. ⟨10.1002/2211-5463.12415⟩
Article dans une revue hal-01891843 v1
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Impacts of <em>Paraburkholderia phytofirmans</em> Strain PsJN on Tomato (<em>Lycopersicon esculentum</em> L.) Under High Temperature

Alaa Issa , Qassim Esmaeel , Lisa Sanchez , Barbara Courteaux , Jean-Francois Guise et al.
Frontiers in Plant Science, 2018, 9, pp.1397. ⟨10.3389/fpls.2018.01397⟩
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Microvine: A New Model to Study Grapevine Growth and Developmental Patterns and their Responses to Elevated Temperature

Nathalie Luchaire , Markus Rienth , Charles Romieu , Ajit Nehe , Ratthaphon Chatbanyong et al.
American Journal of Enology and Viticulture, 2017, 68 (3), pp.283-292. ⟨10.5344/ajev.2017.16066⟩
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QTL Analyses in Multiple Populations Employed for the Fine Mapping and Identification of Candidate Genes at a Locus Affecting Sugar Accumulation in Melon (Cucumis melo L.).

Jason M Argyris , Aurora Díaz , Valentino Ruggieri , Marta Fernández , Torben Jahrmann et al.
Frontiers in Plant Science, 2017, 8, pp.1679. ⟨10.3389/fpls.2017.01679⟩
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The role of potassium on maize leaf carbon exportation under drought condition

Elsa Martineau , Jean-Christophe Domec , Alexandre Bosc , Masako Dannoura , Yves Gibon et al.
Acta Physiologiae Plantarum, 2017, 39 (10), pp.1-13. ⟨10.1007/s11738-017-2515-5⟩
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Exploiting the Genetic Diversity of Maize Using a Combined Metabolomic, Enzyme Activity Profiling, and Metabolic Modeling Approach to Link Leaf Physiology to Kernel Yield.

Rafael Canas-Pendon , Zhazira Yesbergenova-Cuny , Margaret Simons , Fabien Chardon , Patrick Armengaud et al.
The Plant cell, 2017, 29 (5), pp.919-943. ⟨10.1105/tpc.16.00613⟩
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Measurement of Tricarboxylic Acid Cycle Enzyme Activities in Plants.

Rebeca Patricia Omena-Garcia , Wagner L Araújo , Yves Gibon , Alisdair R Fernie , Adriano Nunes-Nesi
Methods in Molecular Biology, 2017, 1670, pp.167-182. ⟨10.1007/978-1-4939-7292-0_14⟩
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Bryophyte gas-exchange dynamics along varying hydration status reveal a significant carbonyl sulphide (COS) sink in the dark and COS source in the light

Teresa E. Gimeno , Jérôme Ogée , Jessica Royles , Yves Gibon , Jason B. West et al.
New Phytologist, 2017, 215 (3), pp.965-976. ⟨10.1111/nph.14584⟩
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Combined Alternaria dauci infection and water stresses impact carotenoid content of carrot leaves and roots

Florent Perrin , Sébastien Huet , Cécile Dubois-Laurent , Yves Gibon , Sylvie Citerne et al.
Environmental and Experimental Botany, 2017, 143, pp.125-134. ⟨10.1016/j.envexpbot.2017.09.004⟩
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A new genomic library of melon introgression lines in a cantaloupe genetic background for dissecting desirable agronomical traits

Gorka Perpiñá , Cristina Esteras , Yves Y. Gibon , Antonio J Monforte , Belén Picó
BMC Plant Biology, 2016, 16 (1), pp.1-21. ⟨10.1186/s12870-016-0842-0⟩
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Correlation-Based Network Analysis of Metabolite and Enzyme Profiles Reveals a Role of Citrate Biosynthesis in Modulating N and C Metabolism in Zea mays.

David Toubiana , Wentao Xue , Nengyi Zhang , Karl Kremling , Amit Gur et al.
Frontiers in Plant Science, 2016, 7, pp.1022. ⟨10.3389/fpls.2016.01022⟩
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Respiration climacteric in tomato fruits elucidated by constraint-based modelling.

Sophie Colombié , Bertrand Beauvoit , Christine Nazaret , Camille Bénard , Gilles Vercambre et al.
New Phytologist, 2016, 213 (4), pp.1726-1739. ⟨10.1111/nph.14301⟩
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Bread wheat (Triticum aestivum L.) grain protein concentration is related to early post-flowering nitrate uptake under putative control of plant satiety level

François Taulemesse , Jacques Le Gouis , David Gouache , Yves Y. Gibon , Vincent Allard
PLoS ONE, 2016, 11 (2), ⟨10.1371/journal.pone.0149668⟩
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Fortune telling: metabolic markers of plant performance

Olivier Fernandez , Maria Urrutia , Stéphane Bernillon , Catherine Giauffret , Francois F. Tardieu et al.
Metabolomics, 2016, 12 (10), ⟨10.1007/s11306-016-1099-1⟩
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Is change in ovary carbon status a cause or a consequence of maize ovary abortion in water deficit during flowering?

Vincent Oury , Cecilio Frois Caldeira , Duyên D. Prodhomme , Jean-Philippe Pichon , Yves Y. Gibon et al.
Plant Physiology, 2016, 71 (2), pp.997-1008. ⟨10.1104/pp.15.01130⟩
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Biochemical characterization of the primary metabolism and antioxidant defence systems of acidic and acidless citrus genotypes during the major stages of fruit growth

Julie Oustric , Sandrine Antoine , Jean Giannettini , Yves Gibon , Luro François et al.
Acta Physiologiae Plantarum, 2015, 37 (11), pp.228. ⟨10.1007/s11738-015-1982-9⟩
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Genome-wide association of carbon and nitrogen metabolism in the maize nested association mapping population.

Nengyi Zhang , Yves Y. Gibon , Jason G Wallace , Nicholas Lepak , Pinghua Li et al.
Plant Physiology, 2015, 168 (2), pp.575-83. ⟨10.1104/pp.15.00025⟩
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Phenotypic and genetic dissection of component traits for early vigour in rice using plant growth modelling, sugar content analyses and association mapping.

M C Rebolledo , M Dingkuhn , Brigitte Courtois , Yves Y. Gibon , Anne Clément-Vidal et al.
Journal of Experimental Botany, 2015, 66 (18), pp.5555-66. ⟨10.1093/jxb/erv258⟩
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Transcriptional and metabolic alternations rebalance wheat grain storage protein accumulation under variable nitrogen and sulfur supply

Zhanwu Dai , Anne A. Plessis , Jonathan Vincent , Nathalie N. Duchateau , Alicia Besson et al.
The Plant Journal, 2015, 83 (2), pp.326-343. ⟨10.1111/tpj.12881⟩
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The intrinsically disordered protein LEA7 from Arabidopsis thaliana protects the isolated enzyme lactate dehydrogenase and enzymes in a soluble leaf proteome during freezing and drying.

Antoaneta V Popova , Saskia Rausch , Michaela Hundertmark , Yves Y. Gibon , Dirk K Hincha
Biochimica et Biophysica Acta Proteins and Proteomics, 2015, 1854, pp.1517-1525. ⟨10.1016/j.bbapap.2015.05.002⟩
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A multi-Ievel omic approach of tomato fruit quality

Jiaxin Xu , Laura Pascual-Banuls , Nelly Desplat , Mireille Faurobert , Yves Gibon et al.
Acta Horticulturae, 2015, 1099, pp.793-800. ⟨10.17660/ActaHortic.2015.1099.100⟩
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Short-and long-term effects of carbohydrate limitation on sugar and organic acid accumulation during mandarin fruit growth

Sandrine Antoine , Olivier Pailly , Yves Gibon , Luro François , Jérémie Santini et al.
Journal of the Science of Food and Agriculture, 2015, 96 (11), pp.3906-3914. ⟨10.1002/jsfa.7594⟩
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Post-flowering nitrate uptake in wheat is controlled by N status at flowering, with a putative major role of root nitrate transporter NRT2.1.

François Taulemesse , Jacques Le Gouis , David Gouache , Yves Y. Gibon , Vincent Allard
PLoS ONE, 2015, 10 (3), ⟨10.1371/journal.pone.0120291⟩
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Overexpression of plastid transketolase in tobacco results in a thiamine auxotrophic phenotype.

Mahdi Khozaei , Stuart Fisk , Tracy Lawson , Yves Y. Gibon , Ronan Sulpice et al.
The Plant cell, 2015, 27 (2), pp.432-47. ⟨10.1105/tpc.114.131011⟩
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Metabolomic profiling in tomato reveals diel compositional changes in fruit affected by source-sink relationships.

Camille Bénard , Stéphane Bernillon , Benoit Biais , Sonia Osorio , Mickael M. Maucourt et al.
Journal of Experimental Botany, 2015, 66 (11), pp.3391-404. ⟨10.1093/jxb/erv151⟩
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Comparative transcriptional profiling analysis of developing melon (Cucumis melo L.) fruit from climacteric and non-climacteric varieties.

Montserrat Saladié , Joaquin Canizares , Michael A Phillips , Manuel Rodríguez-Concepción , Christian Larrigaudiere et al.
BMC Genomics, 2015, 16, pp.440. ⟨10.1186/s12864-015-1649-3⟩
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Modelling central metabolic fluxes by constraint-based optimization reveals metabolic reprogramming of developing Solanum lycopersicum (tomato) fruit.

Sophie Colombié , Christine Nazaret , Camille Bénard , Benoît Biais , Virginie Mengin et al.
The Plant Journal, 2015, 81 (1), pp.24-39. ⟨10.1111/tpj.12685⟩
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Non-structural carbohydrates in woody plants compared among laboratories

Audrey G. Quentin , Elizabeth A. Pinkard , Michael G. Ryan , David T. Tissue , L. Scott Baggett et al.
Tree Physiology, 2015, 35 (11), pp.1146-1165. ⟨10.1093/treephys/tpv073⟩
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Ozone affects ascorbate and glutathione biosynthesis as well as amino acid contents in three Euramerican poplar genotypes

J. Dumont , S. Keski-Saari , M. Keinanen , D. Cohen , N. Ningre et al.
Tree Physiology, 2014, 34 (3), pp.253 - 266. ⟨10.1093/treephys/tpu004⟩
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Metabolic studies in plant organs: don't forget dilution by growth

Michel M. Génard , Valentina Baldazzi , Yves Y. Gibon
Frontiers in Plant Science, 2014, 5, pp.1-5. ⟨10.3389/fpls.2014.00085⟩
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Remarkable reproducibility of enzyme activity profiles in tomato fruits grown under contrasting environments provides a roadmap for studies of fruit metabolism.

Benoit Biais , Camille Bénard , Bertrand Beauvoit , Sophie S. Colombie , Duyên D. Prodhomme et al.
Plant Physiology, 2014, 164, pp.1204-1221. ⟨10.1104/pp.113.231241⟩
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Why bring post-genomics into the phosphorus-impoverished bush?

Yves Y. Gibon
Plant, Cell and Environment, 2014, 37 (6), pp.1273-5. ⟨10.1111/pce.12265⟩
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Association Mapping across Numerous Traits Reveals Patterns of Functional Variation in Maize.

Jason G Wallace , Peter J Bradbury , Nengyi Zhang , Yves Y. Gibon , Mark Stitt et al.
PLoS Genetics, 2014, 10 (12), pp.e1004845. ⟨10.1371/journal.pgen.1004845⟩
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Metabolite Profiling and Integrative Modeling Reveal Metabolic Constraints for Carbon Partitioning under Nitrogen-Starvation in the Green Alga Haematococcus pluvialis.

Lee Recht , Nadine Töpfer , Albert Batushansky , Noga Sikron , Aliza Zarka et al.
Journal of Biological Chemistry, 2014, 289 (44), pp.30387-30403. ⟨10.1074/jbc.M114.555144⟩
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Why measure enzyme activities in the era of systems biology?

Mark Stitt , Yves Y. Gibon
Trends in Plant Science, 2014, 19 (4), pp.256-65. ⟨10.1016/j.tplants.2013.11.003⟩
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Model-Assisted Analysis of Sugar Metabolism throughout Tomato Fruit Development Reveals Enzyme and Carrier Properties in Relation to Vacuole Expansion.

Bertrand Beauvoit , Sophie Colombié , Antoine Monier , Marie-Hélène Andrieu , Benoit Biais et al.
The Plant cell, 2014, 26 (8), pp.3224-3242. ⟨10.1105/tpc.114.127761⟩
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Profiling sugar metabolism during fruit development in a peach progeny with different fructose-to-glucose ratios.

Elsa Desnoues , Yves Y. Gibon , Valentina Baldazzi , Veronique Signoret , Michel M. Génard et al.
BMC Plant Biology, 2014, 14 (1), pp.336 : 1-12. ⟨10.1186/s12870-014-0336-x⟩
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Silencing of the tomato Sugar Partitioning Affecting protein (SPA) modifies sink strength through a shift in leaf sugar metabolism.

Luisa Bermúdez , Fabiana de Godoy , Pierre Baldet , Diego Demarco , Sonia Osorio et al.
The Plant Journal, 2014, 77 (5), pp.676-87. ⟨10.1111/tpj.12418⟩
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Resolving the Role of Plant Glutamate Dehydrogenase: II. Physiological Characterization of Plants Overexpressing the Two Enzyme Subunits Individually or Simultaneously.

Therese Tercé-Laforgue , Magali Bedu , Céline Dargel-Graffin , Frédéric Dubois , Yves Gibon et al.
Plant and Cell Physiology, 2013, 54 (10), ⟨10.1093/pcp/pct108⟩
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SlARF4, an auxin response factor involved in the control of sugar metabolism during tomato fruit development

Maha Sagar , Christian Chervin , Isabelle Mila , Yanwei Hao , Jean-Paul Roustan et al.
Plant Physiology, 2013, 161 (3), pp.1362-1374. ⟨10.1104/pp.113.213843⟩
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Metabolomic and elemental profiling of melon fruit quality as affected by genotype and environment

Stéphane Bernillon , Benoit Biais , Catherine Deborde , Mickael M. Maucourt , Cécile Cabasson et al.
Metabolomics, 2013, 9 (1), pp.57-77. ⟨10.1007/s11306-012-0429-1⟩
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Impact of the carbon and nitrogen supply on relationships and connectivity between metabolism and biomass in a broad panel of Arabidopsis accessions.

Ronan Sulpice , Zoran Nikoloski , Hendrik Tschoep , Carla Antonio , Sabrina Kleessen et al.
Plant Physiology, 2013, 162 (1), pp.347-63. ⟨10.1104/pp.112.210104⟩
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A fluorometric assay for trehalose in the picomole range

Petronia Carillo , Regina Feil , Yves Y. Gibon , Namiko Satoh-Nagasawa , David Jackson et al.
Plant Methods, 2013, 9 (1), pp.21. ⟨10.1186/1746-4811-9-21⟩
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Deciphering genetic diversity and inheritance of tomato fruit weight and composition through a systems biology approach

Laura Pascual-Banuls , Jiaxin Xu , Benoit Biais , Mickael Maucourt , Patricia Ballias et al.
Journal of Experimental Botany, 2013, 64 (18), pp.1-16. ⟨10.1093/jxb/ert349⟩
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Mutagenesis of cysteine 81 prevents dimerization of the APS1 subunit of ADP-glucose pyrophosphorylase and alters diurnal starch turnover in Arabidopsis thaliana leaves

Nadja Hädrich , Janneke H.M. Hendriks , Oliver Kötting , Stéphanie Arrivault , Regina Feil et al.
The Plant Journal, 2012, 70 (2), pp.231-242. ⟨10.1111/j.1365-313X.2011.04860.x⟩
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The art of growing plants for experimental purposes: a practical guide for the plant biologist

Hendrik Poorter , Fabio Fiorani , Max Planck , Uli Schurr , Alex Finck et al.
Functional Plant Biology, 2012, 39 (10-11), pp.821-838. ⟨10.1071/FP12028⟩
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Characterization of a NADH-dependent glutamate dehydrogenase mutant of [i]Arabidopsis[/i] demonstrates the key role of this enzyme in root carbon and nitrogen metabolism

Jean-Xavier J.-X. Fontaine , Therese Tercé-Laforgue , Patrick Armengaud , Gilles Clément , Jean-Pierre Renou et al.
The Plant cell, 2012, 24 (10), pp.4044-4065. ⟨10.1105/tpc.112.103689⟩
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Stress-induced GSK3 regulates the redox stress response by phosphorylating glucose-6-phosphate dehydrogenase in <em>Arabidopsis</em>

Sylvia Dal Santo , Hansjörg Stampfl , Julia Krasensky , Stefan Kempa , Yves Y. Gibon et al.
The Plant cell, 2012, 24 (8), pp.3380-3392. ⟨10.1105/tpc.112.101279⟩
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Water deficits uncouple growth from photosynthesis, increase C content, and modify the relationships between C and growth in sink organs

Bertrand Muller , Florent Pantin , Michel M. Génard , Olivier Turc , Sandra Freixes et al.
Journal of Experimental Botany, 2011, 62 (6), pp.1715-1729. ⟨10.1093/jxb/erq438⟩
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Identification of enzyme activity quantitative trait loci in a <em>Solanum lycopersicum</em> x <em>Solanum pennellii</em> introgression line population

Marie-Caroline Steinhauser , Dirk Steinhauser , Yves Y. Gibon , Marie Bolger , Stéphanie Arrivault et al.
Plant Physiology, 2011, 157 (3), pp.998-1014. ⟨10.1104/pp.111.181594⟩
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Extensive metabolic cross-talk in melon fruit revealed by spatial and developmental combinatorial metabolomics

Annick Moing , Asaph Aharoni , Benoit Biais , Ilana Rogachev , Sagit Meir et al.
New Phytologist, 2011, 190 (3), pp.683-696. ⟨10.1111/j.1469-8137.2010.03626.x⟩
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Use of TILLING and robotised enzyme assays to generate an allelic series of Arabidopsis thaliana mutants with altered ADP-glucose pyrophosphorylase activity

Nadja Hädrich , Yves Y. Gibon , Christian Schudoma , Thomas Altmann , John E. Lunn et al.
Journal of Plant Physiology, 2011, 168 (12), pp.1395-1405. ⟨10.1016/j.jplph.2011.01.013⟩
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Enzyme activity profiles during fruit development in tomato cultivars and Solanum pennellii

Marie-Caroline Steinhauser , Dirk Steinhauser , Karin Koehl , Fernando Carrari , Yves Y. Gibon et al.
Plant Physiology, 2010, 153 (1), pp.80-98. ⟨10.1104/pp.110.154336⟩
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Arabidopsis has a cytosolic fumarase required for the massive allocation of photosynthate into fumaric acid and for rapid plant growth on high nitrogen

Itsara Pracharoenwattana , Wenxu Zhou , Olivier Keech , Perigio B. Francisco , Thanikan Udomchalothorn et al.
The Plant Journal, 2010, 62 (5), pp.785-795. ⟨10.1111/j.1365-313X.2010.04189.x⟩
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Modelling temperature-compensated physiological rates, based on the co-ordination of responses to temperature of developmental processes

Boris Parent , Olivier Turc , Yves Y. Gibon , Francois F. Tardieu
Journal of Experimental Botany, 2010, 61 (8), pp.2057-2069. ⟨10.1093/jxb/erq003⟩
Article dans une revue hal-02664371 v1

Arabidopsis plants acclimate to water deficit at low cost through changes of carbon usage: an integrated perspective using growth, metabolite, enzyme, and gene expression analysis

Irène Hummel , Florent Pantin , Ronan Sulpice , Maria Piques , Gaelle Rolland et al.
Plant Physiology, 2010, 154 (1), pp.357-372. ⟨10.1104/pp.110.157008⟩
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Genetic analysis of central carbon metabolism unveils an amino acid substitution that alters maize NAD-dependent isocitrate dehydrogenase activity

Nengyi Zhang , Amit Gur , Yves Y. Gibon , Ronan Sulpice , Sherry Flint-Garcia et al.
PLoS ONE, 2010, 5 (4), pp.e9991. ⟨10.1371/journal.pone.0009991⟩
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Functional analysis of the anaphase promoting complex activator CCS52A highlights the crucial role of endo-reduplication for fruit growth in tomato

Elodie Mathieu-Rivet , Frederic Gevaudant , Adrien Sicard , Sophie Salar , Phuc Thi Do et al.
The Plant Journal, 2010, 62 (5), pp.727 - 741. ⟨10.1111/j.1365-313X.2010.04198.x⟩
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Adjustment of growth and central metabolism to a mild but sustained nitrogen-limitation in Arabidopsis

Hendrik Tschoep , Yves Gibon , Petronia Carillo , Patrick Armengaud , Marek Szecowka et al.
Plant, Cell and Environment, 2009, 32 (3), pp.300-318. ⟨10.1111/j.1365-3040.2008.01921.x⟩
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Xeml Lab: a tool that supports the design of experiments at a graphical interface and generates computer-readable metadata files, which capture information about genotypes, growth conditions, environmental perturbations and sampling strategy

Jan Hannemann , Hendrik Poorter , Björn Usadel , Oliver E. Bläsing , Alex Finck et al.
Plant, Cell and Environment, 2009, 32 (9), pp.1185-1200. ⟨10.1111/j.1365-3040.2009.01964.x⟩
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Adjustment of growth, starch turnover, protein content and central metabolism to a decrease of the carbon supply when Arabidopsis is grown in very short photoperiods

Yves Y. Gibon , Eva Theresa Pyl , Ronan Sulpice , John E. Lunn , Mélanie Höne et al.
Plant, Cell and Environment, 2009, 32 (7), pp.859-874. ⟨10.1111/j.1365-3040.2009.01965.x⟩
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Multilevel Analysis of Primary Metabolism Provides New Insights into the Role of Potassium Nutrition for Glycolysis and Nitrogen Assimilation in Arabidopsis Roots

Patrick Armengaud , Ronan Sulpice , Anthony Miller , Mark Stitt , Anna Amtmann et al.
Plant Physiology, 2009, 150 (2), pp.772-785. ⟨10.1104/pp.108.133629⟩
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Starch as a major integrator in the regulation of plant growth

R. Sulpice , E.-T. Pyl , H. Ishihara , S. Trenkamp , M. Steinfath et al.
Proceedings of the National Academy of Sciences of the United States of America, 2009, 106 (25), pp.10348-10353. ⟨10.1073/pnas.0903478106⟩
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Ribosome and transcript copy numbers, polysome occupancy and enzyme dynamics in Arabidopsis

Maria Piques , Waltraud X. Schulze , Melanie Höhne , Björn Usadel , Yves Y. Gibon et al.
Molecular Systems Biology, 2009, 5, pp.314 : 1-17. ⟨10.1038/msb.2009.68⟩
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Absence of Symbiotic Leghemoglobins Alters Bacteroid and Plant Cell Differentiation During Development of Lotus japonicus Root Nodules

Thomas Ott , John Sullivan , Euan James , Emmanouil Flemetakis , Catrin Günther et al.
Molecular Plant-Microbe Interactions, 2009, 22 (7), pp.800-808. ⟨10.1094/mpmi-22-7-0800⟩
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High-throughput functional assessment of polysaccharide-active enzymes using matrix-assisted laser desorption/ionization–time-of-flight mass spectrometry as exemplified on plant cell wall polysaccharides

Edouard Leboeuf , Peter Immerzeel , Yves Gibon , Martin Steup , Markus Pauly
Analytical Biochemistry, 2008, 373 (1), pp.9-17. ⟨10.1016/j.ab.2007.10.007⟩
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Integrative analyses of genetic variation in enzyme activities of primary carbohydrate metabolism reveal distinct modes of regulation in Arabidopsis thaliana

Joost Jb Keurentjes , Ronan Sulpice , Yves Gibon , Marie-Caroline Steinhauser , Jingyuan Fu et al.
Genome Biology, 2008, 9 (8), pp.R129. ⟨10.1186/gb-2008-9-8-r129⟩
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Multilevel genomic analysis of the response of transcripts, enzyme activities and metabolites in Arabidopsis rosettes to a progressive decrease of temperature in the non-freezing range

Björn Usadel , Oliver Bläsing , Yves Gibon , Fabien Poree , Melanie Höhne et al.
Plant, Cell and Environment, 2008, 31 (4), pp.518-547. ⟨10.1111/j.1365-3040.2007.01763.x⟩
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Temporal responses of transcripts, enzyme activities and metabolites after adding sucrose to carbon-deprived Arabidopsis seedlings

Daniel Osuna , Bjorn Usadel , Rosa Morcuende , Yves Gibon , Oliver Bläsing et al.
The Plant Journal, 2007, 49 (3), pp.463-491. ⟨10.1111/j.1365-313x.2006.02979.x⟩
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Genome-wide reprogramming of metabolism and regulatory networks of Arabidopsis in response to phosphorus

Rosa Morcuende , Rajendra Bari , Yves Gibon , Wenming Zheng , Bikram Datt Pant et al.
Plant, Cell and Environment, 2007, 30 (1), pp.85-112. ⟨10.1111/j.1365-3040.2006.01608.x⟩
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The enigmatic contribution of mitochondrial function in photosynthesis

A. Nunes-Nesi , R. Sulpice , Y. Gibon , A. Fernie
Journal of Experimental Botany, 2007, 59 (7), pp.1675-1684. ⟨10.1093/jxb/ern002⟩
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Description and applications of a rapid and sensitive non-radioactive microplate-based assay for maximum and initial activity of D-ribulose-1,5-bisphosphate carboxylase/oxygenase

Ronan Sulpice , Hendrik Tschoep , Maria von Korff , Dirk Büssis , Björn Usadel et al.
Plant, Cell and Environment, 2007, 30 (9), pp.1163-1175. ⟨10.1111/j.1365-3040.2007.01679.x⟩
Article dans une revue hal-03321604 v1

Multilevel genomics analysis of carbon signalling during low carbon availability: coordinating the supply and utilisation of carbon in a fluctuating environment

Mark Stitt , Yves Gibon , John Lunn , Maria Piques
Functional Plant Biology, 2007, 34 (6), pp.526. ⟨10.1071/fp06249⟩
Article dans une revue hal-03321597 v1

GC-EI-TOF-MS analysis of in vivo carbon-partitioning into soluble metabolite pools of higher plants by monitoring isotope dilution after 13CO2 labelling

Jan Huege , Ronan Sulpice , Yves Gibon , Jan Lisec , Karin Koehl et al.
Phytochemistry, 2007, 68 (16-18), pp.2258-2272. ⟨10.1016/j.phytochem.2007.03.026⟩
Article dans une revue istex hal-03321603 v1

Deficiency of mitochondrial fumarase activity in tomato plants impairs photosynthesis via an effect on stomatal function

Adriano Nunes-Nesi , Fernando Carrari , Yves Gibon , Ronan Sulpice , Anna Lytovchenko et al.
The Plant Journal, 2007, 50 (6), pp.1093-1106. ⟨10.1111/j.1365-313x.2007.03115.x⟩
Article dans une revue hal-03321601 v1

Integration of metabolite with transcript and enzyme activity profiling during diurnal cycles in Arabidopsis rosettes

Yves Gibon , Bjoern Usadel , Oliver Blaesing , Beate Kamlage , Melanie Hoehne et al.
Genome Biology, 2006, 7 (8), pp.R76. ⟨10.1186/gb-2006-7-8-r76⟩
Article dans une revue hal-03321591 v1

Increased C availability at elevated carbon dioxide concentration improves N assimilation in a legume

Alistair Rogers , Yves Gibon , Mark Stitt , Patrick Morgan , Carl Bernacchi et al.
Plant, Cell and Environment, 2006, 29 (8), pp.1651-1658. ⟨10.1111/j.1365-3040.2006.01549.x⟩
Article dans une revue hal-03321592 v1

PageMan: An interactive ontology tool to generate, display, and annotate overview graphs for profiling experiments

Björn Usadel , Axel Nagel , Dirk Steinhauser , Yves Gibon , Oliver Bläsing et al.
BMC Bioinformatics, 2006, 7 (1), ⟨10.1186/1471-2105-7-535⟩
Article dans une revue hal-03321595 v1

Variation of Enzyme Activities and Metabolite Levels in 24 Arabidopsis Accessions Growing in Carbon-Limited Conditions

Joanna Cross , Maria von Korff , Thomas Altmann , Linda Bartzetko , Ronan Sulpice et al.
Plant Physiology, 2006, 142 (4), pp.1574-1588. ⟨10.1104/pp.106.086629⟩
Article dans une revue hal-03321593 v1

Does elevated atmospheric [CO2] alter diurnal C uptake and the balance of C and N metabolites in growing and fully expanded soybean leaves?

E. Ainsworth , A. Rogers , A. Leakey , L. Heady , Y. Gibon et al.
Journal of Experimental Botany, 2006, 58 (3), pp.579-591. ⟨10.1093/jxb/erl233⟩
Article dans une revue hal-03321596 v1
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Sugar-induced increases in trehalose 6-phosphate are correlated with redox activation of ADPglucose pyrophosphorylase and higher rates of starch synthesis in Arabidopsis thaliana

John E Lunn , Regina Feil , Janneke Hm Hendriks , Yves Gibon , Rosa Morcuende et al.
Biochemical Journal, 2006, 397 (1), pp.139-148. ⟨10.1042/BJ20060083⟩
Article dans une revue hal-00478514 v1

Extension of the Visualization Tool MapMan to Allow Statistical Analysis of Arrays, Display of Coresponding Genes, and Comparison with Known Responses

Björn Usadel , Axel Nagel , Oliver Thimm , Henning Redestig , Oliver Blaesing et al.
Plant Physiology, 2005, 138 (3), pp.1195-1204. ⟨10.1104/pp.105.060459⟩
Article dans une revue hal-03321587 v1

Identification and Characterisation of the α and β Subunits of Succinyl CoA Ligase of Tomato

Claudia Studart-Guimarães , Yves Gibon , Nicolás Frankel , Craig Wood , María Inés Zanor et al.
Plant Molecular Biology, 2005, 59 (5), pp.781-791. ⟨10.1007/s11103-005-1004-1⟩
Article dans une revue istex hal-03321588 v1

Sugars and Circadian Regulation Make Major Contributions to the Global Regulation of Diurnal Gene Expression in Arabidopsis

Oliver Bläsing , Yves Gibon , Manuela Günther , Melanie Höhne , Rosa Morcuende et al.
The Plant cell, 2005, 17 (12), pp.3257-3281. ⟨10.1105/tpc.105.035261⟩
Article dans une revue hal-03321589 v1

GMD@CSB.DB: the Golm Metabolome Database

J. Kopka , N. Schauer , S. Krueger , C. Birkemeyer , B. Usadel et al.
Bioinformatics, 2005, 21 (8), pp.1635-1638. ⟨10.1093/bioinformatics/bti236⟩
Article dans une revue hal-03321585 v1

Metabolite profiling in plant biology: platforms and destinations

Joachim Kopka , Alisdair Fernie , Wolfram Weckwerth , Yves Gibon , Mark Stitt
Genome Biology, 2004, 5 (6), pp.109. ⟨10.1186/gb-2004-5-6-109⟩
Article dans une revue hal-03321580 v1

mapman: a user-driven tool to display genomics data sets onto diagrams of metabolic pathways and other biological processes

Oliver Thimm , Oliver Bläsing , Yves Gibon , Axel Nagel , Svenja Meyer et al.
The Plant Journal, 2004, 37 (6), pp.914-939. ⟨10.1111/j.1365-313x.2004.02016.x⟩
Article dans une revue hal-03321582 v1

Expression of a yeast acetyl CoA hydrolase in the mitochondrion

Lilia Bender-Machado , Michael Bäuerlein , Fernando Carrari , Nicolas Schauer , Anna Lytovchenko et al.
Plant Molecular Biology, 2004, 55 (5), pp.645-662. ⟨10.1007/s11103-004-1557-4⟩
Article dans une revue istex hal-03321583 v1

A Robot-Based Platform to Measure Multiple Enzyme Activities in Arabidopsis Using a Set of Cycling Assays: Comparison of Changes of Enzyme Activities and Transcript Levels during Diurnal Cycles and in Prolonged Darkness[W]

Yves Gibon , Oliver Blaesing , Jan Hannemann , Petronia Carillo , Melanie Höhne et al.
The Plant cell, 2004, 16 (12), pp.3304-3325. ⟨10.1105/tpc.104.025973⟩
Article dans une revue hal-03321584 v1

An assessment of the physiological properties of the so-called compatible solutes using in vitro experiments with leaf discs

François Robert Larher , Aziz Aziz , Yves Gibon , Patricia Trotel-Aziz , Ronan Sulpice et al.
Plant Physiology and Biochemistry, 2003, 41 (6-7), pp.657-666. ⟨10.1016/s0981-9428(03)00076-7⟩
Article dans une revue istex hal-03321575 v1

ADP-Glucose Pyrophosphorylase Is Activated by Posttranslational Redox-Modification in Response to Light and to Sugars in Leaves of Arabidopsis and Other Plant Species

Janneke H.M. Hendriks , Anna Kolbe , Yves Gibon , Mark Stitt , Peter Geigenberger
Plant Physiology, 2003, 133 (2), pp.838-849. ⟨10.1104/pp.103.024513⟩
Article dans une revue hal-03321577 v1

Reduced Expression of Aconitase Results in an Enhanced Rate of Photosynthesis and Marked Shifts in Carbon Partitioning in Illuminated Leaves of Wild Species Tomato

Fernando Carrari , Adriano Nunes-Nesi , Yves Gibon , Anna Lytovchenko , Marcelo Ehlers Loureiro et al.
Plant Physiology, 2003, 133 (3), pp.1322-1335. ⟨10.1104/pp.103.026716⟩
Article dans une revue hal-03321578 v1

Sensitive and high throughput metabolite assays for inorganic pyrophosphate, ADPGlc, nucleotide phosphates, and glycolytic intermediates based on a novel enzymic cycling system

Yves Gibon , Helene Vigeolas , Axel Tiessen , Peter Geigenberger , Mark Stitt
The Plant Journal, 2002, 30 (2), pp.221-235. ⟨10.1046/j.1365-313x.2001.01278.x⟩
Article dans une revue hal-03321314 v1

Interaction between exogenous glycine betaine and the photorespiratory pathway in canola leaf discs

Ronan Sulpice , Yves Gibon , Gabriel Cornic , François Robert Larher
Physiologia Plantarum, 2002, 116 (4), pp.460-467. ⟨10.1034/j.1399-3054.2002.1160404.x⟩
Article dans une revue hal-03321574 v1

Starch Synthesis in Potato Tubers Is Regulated by Post-Translational Redox Modification of ADP-Glucose Pyrophosphorylase

Axel Tiessen , Janneke Hendriks , Mark Stitt , Anja Branscheid , Yves Gibon et al.
The Plant cell, 2002, 14 (9), pp.2191-2213. ⟨10.1105/tpc.003640⟩
Article dans une revue hal-03321573 v1

Metabolic Activity Decreases as an Adaptive Response to Low Internal Oxygen in Growing Potato Tubers

P. Geigenberger , A.R. Fernie , Y. Gibon , M. Christ , M. Stitt
Biological Chemistry, 2000, 381 (8), ⟨10.1515/bc.2000.093⟩
Article dans une revue istex hal-03321303 v1

Proline accumulation in canola leaf discs subjected to osmotic stress is related to the loss of chlorophylls and to the decrease of mitochondrial activity

Yves Gibon , Ronan Sulpice , Francois Larher
Physiologia Plantarum, 2000, 110 (4), pp.469-476. ⟨10.1111/j.1399-3054.2000.1100407.x⟩
Article dans une revue istex hal-03321313 v1

A Single-Step Purification for Glycine Betaine Determination in Plant Extracts by Isocratic HPLC

Marie-Anne Bessieres , Yves Gibon , Jean Claude Lefeuvre , François Larher
Journal of Agricultural and Food Chemistry, 1999, 47 (9), pp.3718-3722. ⟨10.1021/jf990031h⟩
Article dans une revue istex hal-03321310 v1

Exogenously supplied glycine betaine in spinach and rapeseed leaf discs: compatibility or non-compatibility?

R. Sulpice , Y. Gibon , A. Bouchereau , F. Larher
Plant, Cell and Environment, 1998, 21 (12), pp.1285-1292. ⟨10.1046/j.1365-3040.1998.00362.x⟩
Article dans une revue hal-03321309 v1

Is glycine betaine a non-compatible solute in higher plants that do not accumulate it?

Y. Gibon , M. Bessieres , F. Larher
Plant, Cell and Environment, 1997, 20 (3), pp.329-340. ⟨10.1046/j.1365-3040.1997.d01-82.x⟩
Article dans une revue hal-03321306 v1

Cycling Assay for Nicotinamide Adenine Dinucleotides: NaCl Precipitation and Ethanol Solubilization of the Reduced Tetrazolium

Yves Gibon , François Larher
Analytical Biochemistry, 1997, 251 (2), pp.153-157. ⟨10.1006/abio.1997.2283⟩
Article dans une revue istex hal-03321307 v1
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Insights into physiological responses of different grapevine varieties to Flavescence Dorée infection: an integrated approach

Loreen Larroquet , Enora Bodin , Cédric Cassan , Camille Jollard , Marie-Cecile Dufour et al.
6. European Bois Noir workshop and 1st International Pro-AECOGY conference, UMR-1332 Fruit Biology and Pathology, University of Bordeaux and INRAE, May 2024, Bordeaux (France), France
Communication dans un congrès hal-04650385 v1

Comparative constraint-based modelling of fruit development across species highlights nitrogen metabolism in the growth- defence trade-off

Beaumont Chloé , Cassan Cédric , Sylvain Prigent , Hilbert-Masson Ghislaine , Renaud Christel et al.
JOBIM 2024 - Journées Ouvertes en Biologie, Informatique et Mathématiques, Jun 2024, Toulouse, France
Communication dans un congrès hal-04677435 v1

Combining phenotypic, metabolome and proteome data to study maize response to a mild nitrogen deficit

Maria Urrutia , Melisande Blein-Nicolas , Olivier Fernandez , Stéphane Bernillon , Mickael Maucourt et al.
Journées du Protéome Vert, Jun 2022, Gif-sur-Yette, France
Communication dans un congrès hal-03878405 v1

Modeling berry growth and quality formation at multiple levels

Zhanwu Dai , Jinliang Chen , Junqi Zhu , Yongjian Wang , Michel Génard et al.
XIth International Symposium on Grapevine Physiology and Biotechnology, Oct 2021, Stellenbosch, South Africa
Communication dans un congrès hal-04730090 v1

Effet de la sécheresse sur l'expression des symptômes foliaires de l'esca

Giovanni Bortolami , Gregory A. Gambetta , Cédric Cassan , Silvina Dayer , Elena Farolfi et al.
Journées Nationales des maladies du bois de la vigne, Nov 2021, Reims, France
Communication dans un congrès hal-03582553 v1

An integrated fruit model toolkit: combining fruit biophysical processes with central carbon metabolism

J.L. Chen , Bertrand Beauvoit , Sophie Colombie , Léa Roch , Coffi Belmys Cakpo et al.
Symposium on Advanced Technologies and Management for Innovative Greenhouses: GreenSys2019, Jun 2019, Angers, France. pp.401-410, ⟨10.17660/ActaHortic.2020.1296.52⟩
Communication dans un congrès hal-03125090 v1

An overview of NMR applications in metabolite profiling of small molecules for plant metabolism studies

Catherine Deborde , Daniel Jacob , Jean-Xavier J.-X. Fontaine , R. Molinie , Léa Roch et al.
2. International Plant Spectroscopy Conference (IPSC), Mar 2019, Berlin, Germany
Communication dans un congrès hal-02786819 v1

Using metabolomic data to predict Maize yield

Sylvain Prigent , Olivier Fernandez , Stéphane Bernillon , Pierre Pétriacq , Annick Moing et al.
JOBIM 2019, Jul 2019, Nantes, France. pp.151
Communication dans un congrès hal-02565229 v1
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Dissecting G×E and QTL×E of maize yield in contrasting scenarios of light, heat and water deficit

Emilie J. Millet , Willem Kruijer , Santiago Alvarez Prado , Llorenç Cabrera-Bosquet , Aude Coupel-Ledru et al.
XXIVth Eucarpia Maize and Sorghum Conference, TUM School of Life Sciences Weihenstephan, Oct 2019, Freising, Germany
Communication dans un congrès hal-04154261 v1

Dynamics of bud metabolites during dormancy in sweet cherry genotypes with contrasted chilling requirements

Rémi Beauvieux , Bénédicte Wenden , Patricia Ballias , Hélène Christmann , Yves Gibon et al.
8. International Cherry Symposium, Jun 2017, Yamagata, Japan. ⟨10.17660/ActaHortic.2019.1235.56⟩
Communication dans un congrès hal-02737043 v1

Peptide filtering differently affects the performances of XIC-based quantifcation methods

Melisande Blein-Nicolas , Isma Belouah , Thierry Balliau , Yves Gibon , Michel Zivy et al.
Journées Protéome Vert, Apr 2018, Paris, France
Communication dans un congrès hal-03879922 v1

Flux balance modelling in developing tomato fruit: the respiration climacteric as an emergent property

Sophie S. Colombie , Bertrand Beauvoit , Christine Nazaret , Camille Bénard , Cécile Cabasson et al.
10. journées scientifiques du Réseau Francophone de Métabolomique et Fluxomique RFMF 2016, Réseau Francophone de Métabolomique et Fluxomique (RFMF). FRA., May 2016, Montpellier, France
Communication dans un congrès hal-02740471 v1

Is failure of reproductive development under water or heat stress due to C shortage ?

Bertrand Muller , Nathalie Luchaire , Vincent Oury , Francois Tardieu , Yves Gibon et al.
SEB Symposium, Jul 2016, Brighton, United Kingdom
Communication dans un congrès hal-02740765 v1

Integrative and predictive biology outside the plant: linking computational tools to fleshy fruit systems

Cecile Cabasson , Sophie Colombie , Bertrand Beauvoit , Christine Nazaret , Camille Benard et al.
Colloque Biologie synthétique et systémique, BioSynSys, Jun 2016, Bordeaux, France
Communication dans un congrès hal-02739719 v1

Integration of “omics” data provides tools for understanding effects of variable nitrogen (N) and sulphur (S) supply during wheat grain development

Titouan Bonnot , Emmanuelle Bancel , David Alvarez , Mireille Dardevet , Julie Boudet et al.
COST FA1306 meeting, Feb 2016, Versailles, France
Communication dans un congrès hal-02340464 v1

Leaf marker metabolites for low nitrogen stress in maize

Maria Urrutia Rosauro , Stéphane Bernillon , M. Maucourt , Catherine Deborde , Daniel Jacob et al.
Plant Biology Europe EPSO/FESPB 2016, Jun 2016, Prague, Czech Republic
Communication dans un congrès hal-01605806 v1
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High or low fructose? Consequences for sugar metabolism in peach fruit

Elsa Desnoues , Yves Y. Gibon , Valentina Baldazzi , Veronique Signoret , Michel M. Génard et al.
8. ISHS International Peach Symposium, Jun 2013, Matera, Italy. 1 p
Communication dans un congrès hal-02740591 v1

Cellular and subcellular metabolomics reveal changes during tomato leaf development

Clémence de Jaham , Benjamin Thiombiano , Camille Bénard , A.P. Alonso , J.C. Cocuron et al.
9. Journées scientifiques du RFMF, Réseau Francophone de Métabolomique et Fluxomique (RFMF). FRA., Jun 2015, Lille, France
Communication dans un congrès hal-02740382 v1

Investigating plant performance using metabolic phenotyping

Yves Gibon
COST FA 1306: The quest for tolerant varieties - Phenotyping at plant and cellular level, Jun 2015, IPK Gatersleben, Germany
Communication dans un congrès hal-01603501 v1

Using metabolomic approaches and modelling of central metabolic to study fleshy fruit quality

Sophie S. Colombie , Bertrand Beauvoit , Dominique D. Rolin , Stéphane Bernillon , Camille Bénard et al.
1. International Symposium on Metabolomics in Mexico, Jun 2015, Guadalajara, Mexico. 2 p
Communication dans un congrès hal-02800371 v1

Investigating drought resistance using metabolic phenotyping

Yves Gibon
DROPS – EUCARPIA Conference : Recent progress in drought tolerance from genetics to modelling, Jun 2015, Montpellier, France
Communication dans un congrès hal-01603500 v1

Consequences of high temperatures and drought on peach fruit production strongly depends on their period of occurence

Fatima Adra , Gilles Vercambre , Daniel Plénet , Benedicte Bakan , Agathe Noblet et al.
Climate-Smart Agriculture 2015 : Global Science Conference, Mar 2015, Montpellier, France
Communication dans un congrès hal-01603456 v1

Fruit systems biology

Yves Gibon
Tsukuba Global Science Week 2015, Sep 2015, Tsukuba, Japan
Communication dans un congrès hal-01603502 v1

Role of plant carbon status in yield components responses to elevated temperatures in microvine

Nathalie Luchaire , Markus Rienth , Charles Romieu , Laurent Torregrosa , Yves Gibon et al.
19. Journées Internationales de Viticulture GiESCO, May 2015, Gruissan, France. 810 p
Communication dans un congrès hal-01506406 v1

Fruit systems biology

Yves Gibon
IPMB 2015 - 11. International Congress of Plant Molecular Biology, Oct 2015, Igauçu Cataratas, Brazil
Communication dans un congrès hal-01603499 v1

Genomic studies on a highly complex trait in Sweet Cherry: tolerance to rain-induced fruit

José Quero-Garcia , José Antonio Campoy-Corbalan , Guillaume Lalanne-Tisne , Jacques Joly , Yves Y. Gibon et al.
Plant and Animal Genome XXIII, Jan 2015, San Diego, United States
Communication dans un congrès hal-02742464 v1

Dynamique de métabolites en relation avec l’état de dormance des bougeons floraux chez le cerisier doux

Rémi Beauvieux , Bénédicte B. Wenden , Yves Y. Gibon , Elisabeth Dirlewanger
Colloque Francophone Phénologie, Nov 2015, Clermont-Ferrand, France
Communication dans un congrès hal-02743152 v1

Genetic architecture of quantitative responses to <em>Turnip Mosaic Virus</em> (TuMV) infection trait loci in Arabidopsis thaliana through evaluation of biomass, viral accumulation, and metabolic profiles

Anais Graveleau , Bernadette Rubio , Zofia Nehr , Patrick Cosson , Mélodie Caballero et al.
Réseau résistances durables, 2014, Lauret, France
Communication dans un congrès hal-02798441 v1

Modelling fluxes and metabolic network analysis of developing tomato fruits

Sophie S. Colombie , Bertrand Beauvoit , Christine Nazaret , Martine Dieuaide Noubhani , Jean-Pierre Mazat et al.
Bordeaux Computational Biology and Bioinformatics, Nov 2014, Bordeaux, France
Communication dans un congrès hal-02796388 v1

Using developmental and diurnal compositional changes of tomato to study metabolism

Camille Bénard , Stéphane Bernillon , Benoit Biais , Sonia Osorio-Algar , Mickael M. Maucourt et al.
8. Journées Scientifiques du Réseau Français de Métabolomique et Fluxomique RFMF, May 2014, Lyon, France. 1 p
Communication dans un congrès hal-02793195 v1

Fruit quality in sweet cherry: from QTLs to candidate genes

Elisabeth Dirlewanger , José Antonio Campoy-Corbalan , Loick Le Dantec , Jacques Joly , Lydie Fouilhaux et al.
7. International Rosaceae Genomics Conference, Jun 2014, Seattle, United States
Communication dans un congrès hal-02793254 v1

Metabolic Phenotyping, in Quest of Serendipity

Yves Y. Gibon
Journée Scientifique BAP-INRA, Apr 2014, Pont Royal, France
Communication dans un congrès hal-02792057 v1

La métabolomique : un outil de la génomique fonctionnelle au service de la biologie des systèmes

Dominique D. Rolin , Bertrand Beauvoit , Stéphane Bernillon , Camille Bénard , Patricia Ballias et al.
8e Congrès Jeunes Chercheurs de la SFBV, Société Française de Biologie Végétale (SFBV). FRA., Jun 2014, Tours, France. 1 p
Communication dans un congrès hal-02801036 v1

Association mapping fo quantitative responses to Turnip Mosaic Virus (TuMV) infection trait loci in Arabidopsis thaliana through evaluation of biomass, viral accumulation, and metabolic profiles

Anais Graveleau , Bernadette Rubio , Zofia Nehr , Patrick Cosson , Mélodie Caballero et al.
GDR Génétique Quantitative dans les Populations Naturelles, Oct 2015, Toulouse, France
Communication dans un congrès hal-01601534 v1

Fruity data, juicy concepts

Yves Y. Gibon
Institute's days at the MPIMP-Golm, Jun 2013, Potsdam, Germany
Communication dans un congrès hal-02805469 v1

Old school analytical biochemistry in the era of systems biology

Yves Y. Gibon
Accliphot, Oct 2013, Zurich, Switzerland
Communication dans un congrès hal-02802824 v1

Association mapping of quantitative responses to <em>Turnip mosaic virus</em> (TuMV) infection trait loci in <em>Arabidopsis thaliana</em> through evaluation of biomass, viral accumulation, and metabolic profiles

Anais Graveleau , Patrick Cosson , Mélodie Caballero , Frederic Revers , Yves Y. Gibon et al.
14. Rencontres de Virologie Végétale, Jan 2013, Aussois, France. p. 12
Communication dans un congrès hal-02811083 v1
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Combining systems biology, genome resequencing and MAGIC population to decipher the genetic variation of tomato fruit quality

Laura Pascual , Jiaxin Xu , Nelly Desplat , Yves Y. Gibon , Annick Moing et al.
10. Solanaceae conference (SOL 2013), Oct 2013, Beijing, China
Communication dans un congrès hal-02750138 v1

Réseaux métaboliques

Yves Y. Gibon
Colloque AllEnvi - "Modélisation multi-échelle des plantes", Nov 2013, Lyon, France
Communication dans un congrès hal-02802439 v1

Diurnal compositional changes of tomato fruit and leaf

Camille Benard , Stéphane Bernillon , Sonia Osorio-Algar , Mickael M. Maucourt , Benoit Biais et al.
Metabolomics 2013, Jul 2013, Glasgow, United Kingdom. 1 p
Communication dans un congrès hal-02803658 v1

Metabolomics data integration in tomato plant-fruit systems biology

Camille Bénard , Dominique D. Rolin , Stéphane Bernillon , Mickael M. Maucourt , Benoit Biais et al.
Metabolomics-2012, International Conference and Exhibition on Metabolomics & Systems Biology, Feb 2012, San Francisco, United States
Communication dans un congrès hal-02803433 v1

Impact of the tomato fruit temperature on its growth and composition

Hélène Gautier , Nadia Bertin , Valentina Baldazzi , Béatrice Brunel , Jean-Claude L'Hôtel et al.
2. Symposium on Horticulture in Europe, Jul 2012, Angers, France. 1 p
Communication dans un congrès hal-02747573 v1
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A multi-Ievel omic approach of tomato fruit quality

Jiaxin Xu , Laura Pascual , Nelly Desplat , Mireille Faurobert , Yves Y. Gibon et al.
2. Symposium on Horticulture in Europe, Jul 2012, Angers, France
Communication dans un congrès hal-02748459 v1
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Ozone-induced detoxification processes in three <em>populus</em> genotypes: metabolomic and molecular approaches

Jennifer Dumont , M. Keski-Saari , M. Keinanen , S. Kontunen Soppela , David Cohen et al.
Joint International Conference “Biological Reactions of Forests to Climate Change and Air Pollution”, International Union of Forest Research Organisations (IUFRO). AUT., May 2012, Kaunas, Lithuania
Communication dans un congrès hal-02745486 v1

Compositional changes of tomato seeds during development and maturation

Cécile Cabasson , Ousmane Harouna Kore , Catherine Deborde , Mickael M. Maucourt , Annick Moing et al.
6. Journées Scientifiques du Réseau Français de Métabolomique et Fluxomique (RFMF), May 2012, Nantes, France. p. 60
Communication dans un congrès hal-02807332 v1

Genetic diversity, inheritance and integration of multi-level omic data in tomato fruit

Jiaxin Xu , Laura Pascual-Banuls , Nelly Desplat , Jean-Paul Bouchet , Yves Y. Gibon et al.
20. Plant and Animal Genome, Jan 2012, San Diego, United States. pp.W643
Communication dans un congrès hal-02810053 v1

Régulation de la synthèse des protéines de réserve du grain de blé en réponse à la disponibilité en azote et soufre

Anne A. Plessis , Zhanwu Z. Dai , Nathalie N. Duchateau , Mireille M. Dardevet , Duyên D. Prodhomme et al.
Congrès Grains, Oct 2011, Nantes, France
Communication dans un congrès hal-00964176 v1
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Tools and applications in plant metabolomics at Bordeaux Metabolome Fluxome Facility (PMFB; http://www.bordeaux.inra.fr/umr619/NMR.htm)

Catherine Deborde , Stéphane Bernillon , Mickael M. Maucourt , Cécile Cabasson , Benoit Biais et al.
5. Journées scientifiques du Réseau Français de Métabolomique et Fluxomique, Labo/service de l'auteur, Ville service., May 2011, Paris, France
Communication dans un congrès hal-02749839 v1

Integrated approaches for deciphering the mechanisms controlling fruit nutritional quality in tomato

Christophe Rothan , Nicolas Viron , Louise Gilbert , Virginie V. Garcia , Johann J. Petit et al.
Colloque AI Fruit, Apr 2011, Angers, France
Communication dans un congrès hal-02804064 v1
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Variation journalière de la composition métabolique de fruit de tomate en cours de maturation

Camille Benard , Stéphane Bernillon , Mickael M. Maucourt , Benoit Biais , Sonia Osorio-Algar et al.
5. Journées scientifiques du Réseau Français de Métabolomique et Fluxomique, Labo/service de l'auteur, Ville service., May 2011, Paris, France
Communication dans un congrès hal-02749748 v1

Intra and interspecific biochemical phenotyping of Vitis

Nathalie Ollat , Catherine Deborde , Christel Renaud , Mickael M. Maucourt , Stéphanie Doumouya et al.
4. Journées scientifiques du Réseau Français de Métabolomique et Fluxomique, May 2010, Marseille, France
Communication dans un congrès hal-02757382 v1

C metabolism and plant growth under water deficit: chicken and egg

Bertrand Muller , Irène Hummel , Florent Pantin , Ronan Sulpice , Maria Piques et al.
Salt & Water Stress in Plants : from molecules to crops, Gordon Research Conferences (GRC). USA., Jun 2010, Les Diablerets, Switzerland
Communication dans un congrès hal-02756341 v1

A role for carbon metabolism in plant growth response to soil water deficit? An integrated perspective

Bertrand Muller , Irène Hummel , Florent Pantin , Ronan Sulpice , Mark Stitt et al.
SEB Main Meeting 2010, Jun 2010, Prague, Czech Republic
Communication dans un congrès hal-02751275 v1

Fast and cheap metabolic phenotyping for functional genomics

Yves Y. Gibon
Indo French Symposium, Jan 2010, Lucknow, India
Communication dans un congrès hal-02752977 v1

Plant metabolomics at Bordeaux Metabolome-Fluxome Facility. Tools and applications at PMFB

Catherine Deborde , Stéphane Bernillon , Mickael M. Maucourt , Cécile Cabasson , Isabelle Quintana et al.
4. Journées scientifiques du Réseau Français de Métabolomique et Fluxomique, May 2010, Marseille, France
Communication dans un congrès hal-02756773 v1

Phenotypic variability among wild Vitis species: a tool to study some mechanisms underlying berry development and composition

Nathalie Ollat , Stephane Decroocq , Louis Bordenave , Ghislaine Hilbert , Cyril Hevin et al.
2. Rencontres Annuelles de l'ISVV, Institut des Sciences de la Vigne et du Vin (ISVV). FRA., Jul 2010, Villenave d'Ornon, France
Communication dans un congrès hal-02817846 v1

Fast and cheap metabolic phenotyping in plants using microplate technology

Yves Y. Gibon
4. Journées scientifiques du Réseau Français de Métabolomique et Fluxomique, May 2010, Marseille, France
Communication dans un congrès hal-02752517 v1

Biochemical phenotyping of Vitis by 1H-NMR profiling and targeted enzymatic analysis

Nathalie Ollat , Catherine Deborde , Christel Renaud , Mickael M. Maucourt , Stéphanie Doumouya et al.
Metabolomics 2010, Jun 2010, Amsterdam, Netherlands
Communication dans un congrès hal-02753834 v1

Applications and tools in plant metabolomics at Bordeaux Metabolome-Fluxome Facility

Catherine Deborde , Stéphane Bernillon , Mickael M. Maucourt , Cécile Cabasson , Patricia Ballias et al.
Metabolomics 2010, Jun 2010, Amsterdam, Netherlands
Communication dans un congrès hal-02757642 v1

NMR profiling and more for the characterization of melon genetic resources and melon fruit physiology

Annick Moing , Asaph Aharoni , Benoit Biais , Ilana Rogachev , Sagit Meir et al.
4. Journées Scientifiques du Réseau Français de Métabolomique et Fluxomique, May 2010, Marseille, France
Communication dans un congrès hal-02754338 v1

Fast and cheap metabolic phenotyping in plants using microplate technology

Yves Y. Gibon
EPSO workshop on plant phenotyping, Nov 2009, Jülich, Germany
Communication dans un congrès hal-02750440 v1

Ecophysiology meets metabolic profiling

Yves Y. Gibon
Interdrought III, Oct 2009, Shangaï, China
Communication dans un congrès hal-02750983 v1

Carbon budget, protein metabolism and growth: an integrative untargeted approach in Arabidopsis thaliana leaves

Yves Y. Gibon
8. Colloque national de la SFBV, Jul 2009, Strasbourg, France
Communication dans un congrès hal-02752011 v1

Xeml Lab - Give old data a new life

Yves Y. Gibon
CAREX laboratory procedures workshop, Jun 2009, Viterbo, Italy
Communication dans un congrès hal-02753343 v1

Ecophysiology meets metabolic profiling: an integrative approach of Arabidopsis thaliana responses to drought

Irène Hummel , Florent Pantin , R. Sulpice , M. Piques , Gaelle Rolland et al.
Interdrought III, Sep 2009, Shanghai, China
Communication dans un congrès hal-02752763 v1

Hyperprolinemia in leaf tissues of C3 plants subjected to osmotic upshift could reflect metabolic disorders at the mitochondrial level

François R. Larher , Yves Gibon , Michael Moulin , Ronan Sulpice , P. Trotel et al.
6ème colloque national de la Société Française de Biologie Végétale, 2005, Arcachon, France
Communication dans un congrès hal-00016081 v1

Damages to oxidative properties of mitochondria from leaf of tissues of C3 plants could be assessed by the amount of proline accumulated under osmotic stress

François R. Larher , Y. Gibon , Michael Moulin , Ronan Sulpice , P. Trotel et al.
FESPB, 14th Congress of the Federation of European Societies of Plant Biology, 23-27 août 2004, Cracovie, Pologne, 2004, Cracovie, Poland
Communication dans un congrès hal-00105872 v1

Unveiling the Impact of Biostimulant Application on Tomato Metabolism through a metabolomics strategy

Cathleen Mirande-Ney , Nicolas Guibert , Millena Cristina Barros Santos , Adam Rochepeau , Théo Poucet et al.
16ème journées scientifiques du RFMF, Jun 2024, Saint malo, France
Poster de conférence hal-04677506 v1
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Tutti frutti: Metabolomics Meets Machine Learning for Juicy Discoveries

Sylvain Prigent , Millena C. Barros Santos , Giovanni Melandri , Georges Randriafanomezantsoa Radohery , Cédric Cassan et al.
JOBIM 2024 - Journées ouvertes en Biologie, Informatique et Mathématiques, Jun 2024, Toulouse, France
Poster de conférence hal-04677398 v1

The UNTWIST project: Unraveling Stress Response Mechanisms in Camelina sativa for Enhanced Crop Resilience in European Agriculture

Malo Le Boulch , Cédric Cassan , Pierre Pétriacq , Yves Gibon , Sylvain Prigent
JOBIM 2024 - Journées Ouvertes en Biologie, Informatique et Mathématiques, Jun 2024, Toulouse, France
Poster de conférence hal-04677424 v1
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Using metabolomics and predictive metabolomic to study the physiology of an old rustic oilseed plant.

Malo Le Boulch , Millena C. Barros Santos , Susana Silvestre , Dominik Grosskinsky , Anaïs da Costa et al.
Metabolomics 2023, Jun 2023, Niagara falls, Canada
Poster de conférence hal-04396004 v1
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Using machine-learning on metabolomics data to predict complex phenotypes

Sylvain Prigent , Yves Gibon
JOBIM2022, Jul 2022, Rennes, France
Poster de conférence hal-03760581 v1
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Presence/absence variations and SNPs equally contribute to the variations of protein and metabolite abundance

Yacine Djabali , Melisande Blein-Nicolas , Annick Moing , Jorge Duarte , Stéphane Bernillon et al.
Analytics 2022, Sep 2022, Nantes, France.
Poster de conférence hal-03879730 v1
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The PHYTOSTIM Project (2021-2025): Toward an integrative Analysis of Phytostimulant Mode of Action and Acceptance

Cecile Cabasson , Nicolas Guibert , Sabri Najaï , Joana Jorly , C. Eyssan et al.
XII International Agriculture Symposium "AGROSYM 2021", Oct 2021, Sarajevo, Bosnia and Herzegovina. pp.P80, Agrosym 2021 - Book of proceedings
Poster de conférence hal-03383359 v1

Presence/absence variations and SNPs equally contribute to the variations of protein and metabolite abundance

Yacine Djabali , Mélisande Blein , Annick Moing , Jorge Duarte , Thierry Berton et al.
63rd Annual Maize Genetics Meeting, Mar 2021, Virtual, United States
Poster de conférence hal-03368764 v1

Modeling from functioning of a grape berry to the whole plant

Zhanwu Dai , Jinliang Chen , Junqi Zhu , Michel Genard , Bertrand Beauvoit et al.
21st GiESCO International Meeting "A Multidisciplinary Vision towards Sustainable Viticulture", Jun 2019, Thessalonique, Greece. , 2019, A Multidisciplinary Vision towards Sustainable Viticulture
Poster de conférence hal-03420427 v1

NMR metabolomic profiling reveals a distinct metabolic recovery response in shoots and roots of temporarily drought-stressed sugar beets

Rita Wedeking , Mickael Maucourt , Catherine Deborde , Annick Moing , Yves Gibon et al.
International Plant Spectroscopy Conference (IPSC), Mar 2019, Berlin, Germany. 2019
Poster de conférence hal-02556922 v1

Leaf metabolite profiling reveals biochemical diversities within wheat genetic resources

Pierre Petriacq , Amélie Flandin , Sylvain Prigent , Stéphane Bernillon , Cédric Cassan et al.
15. Annual Conference of the Metabolomics Society (Metabolomics 2019), Jun 2019, La Hague, Netherlands. , pp.209-209, 2019, METABOLOMICS 2019, 15th Annual Conference of the Metabolomics Society, June 23-27, The Hague, Netherlands
Poster de conférence hal-02936725 v1
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MetaboHUB-Bordeaux

Stéphane Bernillon , Cecile Cabasson , Cédric Cassan , Grégory da Costa , Catherine Deborde et al.
Journées Scientifiques INRA-BAP, Sep 2019, Hyères, France. , 2019
Poster de conférence hal-02570809 v1

Combined metabolomic and proteomic profiling of maize leaf to reveal metabolic responses to cold temperatures

Maria Urrutia , Melisande Blein-Nicolas , Stéphane Bernillon , Catherine Deborde , Mickaël Maucourt et al.
11. Journées Scientifiques du RFMF, May 2018, Liège, Belgium. pp.P25, 2018, 11. Journées Scientifiques du RFMF
Poster de conférence hal-03125712 v1

A multi-level modelling framework for simulating grape growth and biochemical compositions under genotype x environment interactions

Jinliang Chen , Junqi Zhu , Benjamin Tiffon-Terrade , Michel Génard , Bertrand Beauvoit et al.
12. International Conference on Grapevine Breeding and Genetics, Jul 2018, Bordeaux, France. ISHS-International Society for Horticultural Science, Acta Horticulturae, 2018
Poster de conférence hal-02736966 v1
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Grain abortion under drought in maize: expansive growth and hydraulics also matter

Olivier Turc , Vincent Oury , Yves Gibon , Duyên Prodhomme , Francois Tardieu et al.
60. Maize Genetics Conference, Mar 2018, Saint-Malo, France. , 2018
Poster de conférence hal-02738086 v1
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Primary metabolism investigation of fleshy fruit species using 1H-NMR profiling

Léa Roch , Coffi Belmys Cakpo , Catherine Deborde , Mickael Maucourt , Thierry Berton et al.
EUROMAR - European Magnetic Resonance Meeting, Jul 2018, Nantes, France. 2018
Poster de conférence hal-02737961 v1

Are metabolic traits markers of the plant response to virus infection? A phenotype and genotype study in Arabidopsis thaliana in response to TuMV (Turnip mosaic virus) in a natural environment

Bernadette Rubio , Patrick Cosson , Mélodie Caballero , Frederic Revers , Yves Gibon et al.
16. Rencontres de Virologie Végétale (RVV 2017), Jan 2017, Aussois, France. 2017
Poster de conférence hal-01603260 v1

Central carbon metabolism and anthocyanin biosynthesis in grape berry

Zhanwu Dai , Jing Wu , Yves Gibon , Ghislaine Hilbert , Messa Meddar et al.
4. International Conference on Plant Metabolism, Jul 2017, Dalian, China. 2017
Poster de conférence hal-02736097 v1
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Yield maintenance under drought: expansive growth and hydraulics also matter in reproductive organs

Olivier Turc , Vincent Oury , Yves Gibon , Duyên Prodhomme , Francois Tardieu
Interdrought V, Feb 2017, Hyderabad, India. 2017
Poster de conférence hal-01605905 v1
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Comparative study of primary metabolite patterns in diverse fleshy fruit species

Léa Roch , C B Cakpo , Thierry Berton , Stéphane Bernillon , Stéphanie Arrivault et al.
MetaboMeeting, Dec 2017, Birmingham (UK), United Kingdom
Poster de conférence hal-04955742 v1

Multiscale Fruit Modeling: integrating biophysical fruit growth with biochemical metabolisms in 10 fruits

Zhanwu Dai , Bertrand Beauvoit , Sophie Colombie , Michel Génard , Gilles Vercambre et al.
2. Annual Crops in silico Symposium and Workshop, Jun 2017, Oxford, United Kingdom. 2017
Poster de conférence hal-02735987 v1

Physiological Analysis of Buds Dormancy in Sweet Cherry

Rémi Beauvieux , Bénédicte Wenden , Camille Benard , Hélène Christmann , Yves Gibon et al.
Plant and Animal Genome XXV, Jan 2017, San Diego, United States. 2017
Poster de conférence hal-01603066 v1

Tomato cultivars with high resistance to blossom-end rot show a greater antioxidant capacity prior to symptom appearance

Rached Moalla , Pierre Baldet , Yves Gibon , Chiaki Matsukura , Tohru Ariizumi et al.
14. Solanaceae and 3. Cucurbitaceae Genomics Joint Conference - Solcuc2017, Sep 2017, Valencia, Spain. 2017
Poster de conférence hal-02734102 v1

Metabolites analysis of flower buds during dormancy in sweet cherry

Rémi Beauvieux , Bénédicte B. Wenden , Camille Bénard , Hélène Christmann , Yves Y. Gibon et al.
8. International Rosaceae Genomics Conference (RGC8), Jun 2016, Angers, France. 2016
Poster de conférence hal-02739660 v1

Plant Metabolomics at Bordeaux Metabolome Facility, a member of MetaboHUB and PHENOME IA projects. Tools and Applications

Catherine Deborde , Patricia Ballias , Camille Bénard , Stéphane Bernillon , Thierry Berton et al.
10. journées scientifiques du Réseau Francophone de Métabolomique et Fluxomique RFMF 2016, May 2016, Montpellier, France. 2016
Poster de conférence hal-02743906 v1

Combining LCMS data from two years for plant performance biomarkers discovery

Maria Urrutia Rosauro , Stéphane Bernillon , Nadia Lamari , Mickael M. Maucourt , Patricia Ballias et al.
Metabolomics 2016. 12. Annual Conference of the Metabolomics Society, Jun 2016, Dublin, United Kingdom. 2016
Poster de conférence hal-02742089 v1
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Yield reduction under high temperature is paired with a low carbon status in microvine

Nathalie Luchaire , Laurent Torregrosa , Yves Gibon , Markus Rienth , Charles Romieu et al.
10. International Symposium on Grapevine Physiology and Biotechnology, Jun 2016, Verone, Italy. 2016
Poster de conférence hal-02793305 v1

The timing of shifts in the transcriptome and proteome in relation to metabolic state during tomato fruit development

Isma Belouah , Thierry Balliau , Camille Benard , Bertrand Beauvoit , Sophie Colombie et al.
Metabolomics 2016. 12. Annual Conference of the Metabolomics Society, Jun 2016, Dublin, Ireland. , 2016
Poster de conférence hal-01603579 v1

Searching for marker metabolites of crop performance

Annick Moing , Maria Urrutia , Olivier Fernandez , Vanessa Zhendre , Nadia Lamari et al.
Metabolomics 2016. 12. Annual Conference of the Metabolomics Society, Jun 2016, Dublin, United Kingdom. 2016
Poster de conférence hal-02744241 v1

Plant Metabolomics at Bordeaux Metabolome Facility, a member of MetaboHUB and PHENOME IA projects. Tools and Applications

Catherine Deborde , Patricia Ballias , Camille Bénard , Stéphane Bernillon , Thierry Berton et al.
Metabolomics 2016. 12. Annual Conference of the Metabolomics Society, Jun 2016, Dublin, Ireland. 2016
Poster de conférence hal-02741696 v1
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How to optimize metabolites concentrations and fluxes in a metabolic pathway? Backgrounds and Basics

Christine Nazaret , Sophie Colombié , Bertrand Beauvoit , Martine Dieuaide-Noubhani , Jean-Pierre Mazat et al.
International Study Group for Systems Biology meeting (ISGSB 2016) , Oct 2016, Jena, Germany.
Poster de conférence hal-01445608 v1

Interaction between the enzymes of central carbon metabolism and anthocyanin biosynthesis during grape berry development

Zhanwu Dai , Jing Wu , Yves Gibon , Ghislaine Hilbert , Messa Meddar et al.
Macromolecules and Secondary Metabolites of Grapevine and Wine - Macrowine 2016, Jun 2016, Changins, Switzerland. 2016
Poster de conférence hal-02744264 v1

Characterization of a plant cell suspension culture of Vitis vinifera: biomass composition assessment before C13-metabolic flux analysis

Angela Machado Vieira , Stéphanie Cluzet , Catherine Deborde , Ghislaine Hilbert , Annick Moing et al.
10. journées scientifiques du Réseau Francophone de Métabolomique et Fluxomique RFMF 2016, May 2016, Montpellier, France. 2016
Poster de conférence hal-02741756 v1

Metabolic profiles and viral charge genome wide mapping in Arabidopsis thaliana in response to TuMV (Turnip mosaic virus) in a natural environment

Bernadette Rubio , Patrick Cosson , Mélodie Caballero , Frederic Revers , Yves Gibon et al.
20. General Congress of EUCARPIA "Plant breeding: the art of bringing science to life", Aug 2016, Zurich, Switzerland. , Abstracts
Poster de conférence hal-02953367 v1

Towards improved fruit set efficiency using tomato genetic resources

Tohru Ariizumi , Y Shinozaki , Y Okabe , K Hoshikawa , M Shikata et al.
12. Solanaceae Conference SOL 2015, Oct 2015, Bordeaux, France. 2015, SOL 2015
Poster de conférence hal-01604671 v1

Combining MS and proton NMR metabolomic profiling during tomato fruit development to study environment effect on metabolism

Léa Roch , Stéphane Bernillon , Mickael Maucourt , Catherine Deborde , Camille Benard et al.
12. Solanaceae Conference SOL 2015, Oct 2015, Bordeaux, France. 2015, SOL 2015 - Book of abstracts
Poster de conférence hal-01606414 v1

Cold treatment affects the metabolite profiles of maize leaves

Nadia Lamari , Vanessa Zhendre , Stéphane Bernillon , Mickael M. Maucourt , Catherine Deborde et al.
9. Journées scientifiques du RFMF, Jun 2015, Lille, France. 2015
Poster de conférence hal-02742488 v1

Modelling metabolic fluxes during tomato fruit development

Sophie Colombie , Bertrand Beauvoit , Christine Nazaret , Camille Benard , Martine Dieuaide Noubhani et al.
12. Solanaceae Conference SOL 2015, Oct 2015, Bordeaux, France. 2015, SOL 2015
Poster de conférence hal-01601445 v1

Combining MS and NMR metabolomic profiling during tomato fruit development to study environment effect on metabolism

Léa Roch , Stéphane Bernillon , Mickael M. Maucourt , Catherine Deborde , Camille Bénard et al.
9. Journées scientifiques du RFMF, Jun 2015, Lille, France. 2015
Poster de conférence hal-02739251 v1

Plant Metabolomics at Bordeaux Metabolome Facility, a member of MetaboHUB and PHENOME IA projects. Tools and Applications.

Annick Moing , Catherine Deborde , Patricia Ballias , Camille Bénard , Stéphane Bernillon et al.
9. Journées scientifiques du RFMF, Jun 2015, Lille, France. 2015
Poster de conférence hal-02743630 v1

Consequences of high temperatures and drought on peach fruit production strongly depends on their period of occurence

Fatima Adra , Gilles Vercambre , Daniel Plénet , Benedicte Bakan , Agathe Noblet et al.
ISHS International Symposium, INNOHORT, Jun 2015, Avignon, France. 2015, Innovation in Integrated & Organic Horticulture
Poster de conférence hal-01608225 v1

Primary metabolism intermediates of two tomato leaf tissues in contrasted light intensity conditions

Stéphane Bernillon , Stéphanie Arrivault , Manuela Guenther , Regina Feil , Patricia Ballias et al.
9. Journées scientifiques du RFMF, Jun 2015, Lille, France. 2015
Poster de conférence hal-02740588 v1

<em>Arabidopsis thaliana</em> susceptibility to TuMV (<em>Turnip mosaic virus</em>) in natural environment: mapping loci involved in viral charge and preliminary results on associated metabolic profiles

Bernadette Rubio , Patrick Cosson , Mélodie Caballero , Frederic Revers , Yves Y. Gibon et al.
15. Rencontres de Virologie Végétale (RVV), Jan 2015, Aussois, France. 2015
Poster de conférence hal-02797938 v1

Suppression of ADP-glucose pyrophosphorylase genes affects fruit skin thickness as well as fruit sugar and sugar phosphate contents in tomato (Solanum lycopersicum L.)

H Suzuki , M Sato , S Nonaka , Yves Gibon , Christophe Rothan et al.
12. Solanaceae Conference SOL 2015, Oct 2015, Bordeaux, France. 2015, SOL 2015
Poster de conférence hal-01602128 v1

Assessment of metabolome compartmentation changes during tomato leaf development using nonaqueous fractionation

Clémence de Jaham , Benjamin Thiombiano , Camille Benard , A. P. Alonso , J. C. Cocuron et al.
12. Solanaceae Conference SOL 2015, Oct 2015, Bordeaux, France. 2015, SOL 2015 - Book of abstracts
Poster de conférence hal-01603745 v1

Metabolomic analyses in sweet cherry

José Quero-Garcia , Guillaume Lalanne-Tisne , Virginie Cocureau , José Antonio Campoy , Yves Y. Gibon et al.
7. International Rosaceae Genomics Conference, Jun 2014, Seattle, United States. 2014
Poster de conférence hal-02792223 v1

Plant Metabolomics at Bordeaux Metabolome Facility, a member of MetaboHUB IA project. Tools and Applications

Annick Moing , Catherine Deborde , Patricia Ballias , Camille Bénard , Stéphane Bernillon et al.
8. Journées Scientifiques du Réseau Français de Métabolomique et Fluxomique RFMF, May 2014, Lyon, France. 1 p., 2014
Poster de conférence hal-02799366 v1
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XEML Interactive designer

Benjamin Dartigues , Kenny Biliau , Cécile Cabasson , Yves Gibon , Joachim Kopka et al.
Bordeaux Computational Biology and Bioinformatics, Nov 2014, Bordeaux, France. , 1 p., 2014
Poster de conférence hal-01203290 v1

Integrative analysis of metabolite and enzyme profiles in ripening grape berries in response to source-sink modulation

Zhanwu Z. Dai , Natalia Bobeica , John Edward Lunn , Regina Feil , Ghislaine Hilbert et al.
3. Annual Conference of the COST ACTION QUALITYFRUIT, Sep 2014, Chania, Greece. 2014, Book of abstracts
Poster de conférence hal-02740512 v1

Development of recombinant sub-NILs containing smaller introgressions of QTL SC5-1 determined to be involved in the accumulation of sugar via MAS and high throughput SNP genotyping

Jason M. Argyris , Jordi Garcia-Mas , Torben Jahrmann , Marta Fernández , Belén Picó et al.
Cucurbitaceae 2014, Oct 2014, Bay Harbor, United States. 2014
Poster de conférence hal-02799217 v1

Flux Balance Analysis metabolic modelling highlights cell energy and redox status as a metabolic driver for anthocyanin accumulation in grapevine GT3 cells under nitrogen starvation

E. Soubeyrand , Sophie S. Colombie , Zhanwu Z. Dai , S. Cluzet , Ghislaine Hilbert et al.
ICP 2014 - XXVIIth International Conference on Polyphenols, Sep 2014, Nagoya, Japan. 2014
Poster de conférence hal-02792547 v1

Hit-Me: high throughput metabolic phenotyping in PHENOME!

Camille Bénard , Duyên D. Prodhomme , Patricia Ballias , Yves Y. Gibon
EPSO Workshop, Jun 2014, Dublin, Ireland. 2014
Poster de conférence hal-02792062 v1

Combining metabolite and enzymatic profiling during tomato fruit development

Mickael M. Maucourt , Camille Bénard , Benoit Biais , Patricia Ballias , Catherine Deborde et al.
8. Journées Scientifiques du Réseau Français de Métabolomique et Fluxomique RFMF, May 2014, Lyon, France. 1 p., 2014
Poster de conférence hal-02793996 v1

Flux balance analysis highlights cell energy and redox status as metabolic drivers for anthocyanin accumulation in grapevine GT3 cells under nitrogen starvation

Eric Soubeyrand , Sophie Colombie , Zhanwu Dai , Stéphanie Cluzet , Ghislaine Hilbert et al.
Macrowine 2014, Sep 2014, Stellenbosch, South Africa. 2014
Poster de conférence hal-02739299 v1

Influence of diurnal factor on compositional changes of tomato fruit and leaf

Camille Benard , Stéphane Bernillon , Sonia Osorio-Algar , Mickael M. Maucourt , Benoit Biais et al.
7. Journées scientifiques du Réseau Français de Métabolomique et Fluxomique, Jun 2013, Amiens, France. 2013
Poster de conférence hal-02805301 v1

On-going method developments in Bordeaux Metabolome Facility

Stéphane Bernillon , Benoit Biais , Catherine Deborde , Laetitia Fouillen , Yvon Guntz et al.
Metabolomics 2013 - 9. Annual conference of the Metabolomics Society, Jun 2013, Glasgow, United Kingdom. 2013
Poster de conférence hal-02804388 v1

Towards a system biology approach of the effect of different levels of nitrogen supply on anthocyanin accumulation in grapevine cell suspensions

Eric Soubeyrand , Sophie S. Colombie , Isabelle Merlin , Ghislaine Hilbert , Bertrand Beauvoit et al.
Plant Biology 2013, Jul 2013, Rhode Island, United States. 2013
Poster de conférence hal-02804615 v1

Kinetic modelling of the metabolism and compartmentation of sugars during tomato fruit development

Bertrand Beauvoit , Sophie S. Colombie , Christine Nazaret , Marie-Hélène Andrieu , Martine Dieuaide Noubhani et al.
Metabolic Pathway Analysis 2013, Sep 2013, Oxford, United Kingdom. 2013
Poster de conférence hal-02809066 v1

Towards a FSPM of bud outgrowth for rosebush: experimental analysis of sugar effect

Jessica Bertheloot , François Barbier , Yves Y. Gibon , Rachid Boumaza , Soulaiman Sakr et al.
7 th International Conference on Functional- Structural Plant Models, Jun 2013, Saarisalkä, Finland. Finnish Society of Forest Science, 2013
Poster de conférence hal-02748594 v1

A systems biology approach for the effect of nitrogen supply on anthocyanin accumulation in grapevine cell suspensions

Eric Soubeyrand , Sophie S. Colombie , Isabelle Merlin , Ghislaine Hilbert , Bertrand Beauvoit et al.
7. Journées scientifiques du Réseau Français de Métabolomique et Fluxomique, Jun 2013, Amiens, France. 2013
Poster de conférence hal-02810027 v1

Coordinated methodological developments for plant metabolomics at Bordeaux

Stéphane Bernillon , Benoit Biais , Catherine Deborde , Laetitia Fouillen , Yvon Guntz et al.
7. Journées scientifiques du Réseau Français de Métabolomique et de Fluxomique, Jun 2013, Amiens, France. 2013
Poster de conférence hal-02810760 v1

Identification and characterization of two new transcription factors implicated in tomato fruit development

Martine Lemaire Lemaire-Chamley , Julien Assali , Joana Jorly , Guillaume G. Menard , Yves Y. Gibon et al.
COST Action FA1106 "QualityFruit" - 2 nd Annual Conference Fleshy Fruit Development & Ripening, Sep 2013, Chania, Greece. 2013
Poster de conférence hal-02803787 v1
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Seed abortion of maize under water deficit is linked to a developmental process and not to carbon deprivation

Vincent Oury , Duyên D. Prodhomme , Yves Y. Gibon , Francois F. Tardieu , Olivier Turc
Interdrought IV Conference, Sep 2013, Perth, Australia. 2013
Poster de conférence hal-02745394 v1
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Comparison of metabolomic, proteomic and genomic variability in tomato fruit

Mathilde M. Causse , Jiaxin Xu , Laura Pascual , Yves Y. Gibon , Annick Moing et al.
9. Solanaceae Conference (SOL2012), Aug 2012, Neuchâtel, Switzerland. 2012, SOL 2012: From the Bench to Innovative Applications
Poster de conférence hal-02745839 v1

Compositional changes in fruit pericarp of water-stressed tomato in greenhouse

Annick Moing , Benoit Biais , Mickael M. Maucourt , Camille Benard , Patricia Ballias et al.
Metabolomics 2012, Jun 2012, Washington, United States. 1 p., 2012
Poster de conférence hal-02805488 v1
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High or low fructose? Consequences for sugar metabolism in peach fruit

Elsa Desnoues , Yves Y. Gibon , Valentina Baldazzi , Veronique Signoret , Michel M. Génard et al.
6. Rosaceous Genomics Conference, Sep 2012, San Michele all’Adige, Italy. 1 p., 2012
Poster de conférence hal-02804340 v1

A simple model of tomato metabolism

Bertrand Beauvoit , Benoit Biais , Sophie S. Colombie , Martine Dieuaide , Yves Y. Gibon et al.
International Study Group for Systems Biology, Sep 2012, Ameland, Netherlands. 2012
Poster de conférence hal-02806898 v1

Diurnal compositional changes in pericarp of tomato fruit

Camille Bénard , Benoit Biais , Stéphane Bernillon , Mickael M. Maucourt , Sonia Osorio-Algar et al.
Metabomeeting 2011, Sep 2011, Helsinki, Finland. , 1 p., 2011
Poster de conférence hal-02747463 v1

A role for Carbon metabolism in leaf growth response to soil water deficit ? An integrated perspective

Irène Hummel , Florent Pantin , Ronan Sulpice , Gaelle Rolland , Maria Piques et al.
20. International Conference on Arabidopsis Research (ICAR), Jun 2009, Edinburgh, United Kingdom. 2009
Poster de conférence hal-02757475 v1

Plant metabolomics and breeding

Olivier Fernandez , Emilie Millet , Renaud Rincent , Sylvain Prigent , Pierre Pétriacq et al.
Elsevier. Plant Metabolomics in full swing, 98, 2021, Advances in Botanical Research, 978-0-12-821688-0. ⟨10.1016/bs.abr.2020.09.020⟩
Chapitre d'ouvrage hal-03150312 v1

Developmental metabolomics to decipher and improve fleshy fruit quality

J. William Allwood , Yves Gibon , Sonia Osorio , Wagner Araújo , José Vallarino et al.
Elsevier. Plant Metabolomics in full swing, 98, 2021, Advances in Botanical Research, 978-0-12-821688-0. ⟨10.1016/bs.abr.2020.09.016⟩
Chapitre d'ouvrage hal-03121970 v1

Untargeted Analysis of Semipolar Compounds by LC-MS and Targeted Analysis of Fatty Acids by GC-MS/GC-FID: From Plant Cultivation to Extract Preparation

Camille Benard , Sébastien Acket , Yannick Rossez , Olivier Fernandez , Thierry Berton et al.
Plant Metabolomics, 1778, Springer Science + Business Media B.V., pp.101-124, 2018, Methods in Molecular Biology, 978-1-4939-7818-2. ⟨10.1007/978-1-4939-7819-9_8⟩
Chapitre d'ouvrage hal-01972166 v1

Measurement of Enzyme Activities and Optimization of Continuous and Discontinuous Assays

Camille Benard , Yves Gibon
Current Protocols in Plant Biology, John Wiley and Sons Inc, 2016, 9781119077367. ⟨10.1002/cppb.20003⟩
Chapitre d'ouvrage hal-01605777 v1

Analysis of enzyme activities

Guillaume G. Menard , Benoit Biais , Duyên D. Prodhomme , Patricia Ballias , Yves Y. Gibon
Plant Metabolic Flux Analysis : Methods and Protocols, 1090, Springer Science+Business Media, 2014, Methods in Molecular Biology, 978-1-62703-687-0. ⟨10.1007/978-1-62703-688-7_15⟩
Chapitre d'ouvrage hal-02799530 v1

High-throughput biochemical phenotyping for plants

Guillaume G. Menard , Benoit Biais , Duyên D. Prodhomme , Patricia Ballias , Johann J. Petit et al.
Metabolomics coming of age with its technological diversity, 67 (1ère éd.), Elsevier Ltd, 693 p., 2013, Advances in Botanical Research, 978-0-12-397922-3. ⟨10.1016/B978-0-12-397922-3.00009-5⟩
Chapitre d'ouvrage hal-02811316 v1

Aspects of experimental design for plant metabolomics experiments and guidelines for growth of plant material

Yves Gibon , Dominique Rolin
Plant metabolomics : Methods and protocols, 860, Springer Science+Business Media, 340 p., 2012, Methods in Molecular Biology, 978-1-61779-593-0
Chapitre d'ouvrage hal-02928423 v1

Aspects of experimental design for plant metabolomics experiments and guidelines for growth of plant material

Yves Y. Gibon , Dominique D. Rolin
Plant metabolomics : Methods and protocols, 860, Springer Science+Business Media, 340 p., 2012, Methods in Molecular Biology, 978-1-61779-593-0. ⟨10.1007/978-1-61779-594-7⟩
Chapitre d'ouvrage hal-02803292 v1

New opportunities in metabolomics biochemical phenotyping for plant systems biology

Yves Y. Gibon , Dominique D. Rolin , Catherine Deborde , Stéphane Bernillon , Annick Moing
Metabolomics, InTech, 2012, 978-953-51-0046-1
Chapitre d'ouvrage hal-02804473 v1

Enzyme Kinetics: Theory and Practice

Alistair Rogers , Yves Gibon
Plant Metabolic Networks, Springer New York, pp.71-103, 2009, ⟨10.1007/978-0-387-78745-9_4⟩
Chapitre d'ouvrage hal-03321610 v1