Alexandre G. de Brevern

157
Documents

Publications

Publications

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Molecular dynamics of the human RhD and RhAG blood group proteins

Aline Floch , Tatiana Galochkina , France Pirenne , Christophe Tournamille , Alexandre G de Brevern
Frontiers in Chemistry, 2024, 12, pp.1360392. ⟨10.3389/fchem.2024.1360392⟩
Article dans une revue inserm-04510947 v1
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HumanLectome, an update of UniLectin for the annotation and prediction of human lectins

Boris Schnider , Yacine M’rad , Jalaa El Ahmadie , Alexandre G de Brevern , Anne Imberty et al.
Nucleic Acids Research, 2024, 52 (D1), pp.D1683 - D1693. ⟨10.1093/nar/gkad905⟩
Article dans une revue hal-04376368 v1
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Lysosomal damage due to cholesterol accumulation triggers immunogenic cell death

Karla Alvarez-Valadez , Allan Sauvat , Julien Diharce , Marion Leduc , Gautier Stoll et al.
Autophagy, 2024, 08, pp.1-23. ⟨10.1080/15548627.2024.2440842⟩
Article dans une revue hal-04875040 v1

Structural Space of the Duffy Antigen/Receptor for Chemokines’ Intrinsically Disordered Ectodomain 1 Explored by Temperature Replica-Exchange Molecular Dynamics Simulations

Agata Kranjc , Tarun Jairaj Narwani , Sophie Abby , Alexandre de Brevern
International Journal of Molecular Sciences, 2023, 24 (17), pp.13280. ⟨10.3390/ijms241713280⟩
Article dans une revue hal-04256911 v1
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General Trends of the Camelidae Antibody VHHs Domain Dynamics

Akhila Melarkode Vattekatte , Julien Diharce , Joseph Rebehmed , Frédéric Cadet , Fabrice Gardebien et al.
International Journal of Molecular Sciences, 2023, 24, pp.4511. ⟨10.3390/ijms24054511⟩
Article dans une revue inserm-04258550 v1
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BioMedInformatics, the Link between Biomedical Informatics, Biology and Computational Medicine

Alexandre G de Brevern
BioMedInformatics, 2023, 4, pp.1 - 7. ⟨10.3390/biomedinformatics4010001⟩
Article dans une revue inserm-04510907 v1
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AlphaFold2 Update and Perspectives

Sébastien Tourlet , Ragousandirane Radjasandirane , Julien Diharce , Alexandre G de Brevern
BioMedInformatics, 2023, 3, pp.378 - 390. ⟨10.3390/biomedinformatics3020025⟩
Article dans une revue inserm-04258522 v1
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Evaluation of Transmembrane Protein Structural Models Using HPMScore

Stéphane Téletchéa , Jérémy Esque , Aurélie Urbain , Catherine Etchebest , Alexandre G de Brevern
BioMedInformatics, 2023, 3 (2), pp.306 - 326. ⟨10.3390/biomedinformatics3020021⟩
Article dans une revue hal-04813790 v1
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A perspective on the sharing of docking data

Samia Aci-Sèche , Stéphane Bourg , Pascal Bonnet , Joseph Rebehmed , Alexandre de Brevern et al.
Data in Brief, 2023, 49 (22), pp.109386. ⟨10.1016/j.dib.2023.109386⟩
Article dans une revue hal-04251910 v1

CALR-ETdb, the database of calreticulin variants diversity in essential thrombocythemia

Nora El Jahrani , Gabriel Cretin , Alexandre de Brevern
Platelets, 2022, 33 (1), pp.157-167. ⟨10.1080/09537104.2020.1869712⟩
Article dans une revue hal-03695851 v1

New αIIbβ3 variants in 28 Turkish Glanzmann patients; structural hypothesis for complex activation by residues variations in I-EGF domains

M Koker , N Sarper , C Albayrak , B Zulfikar , E Zengin et al.
Platelets, 2022, 33 (4), pp.551-561. ⟨10.1080/09537104.2021.1947481⟩
Article dans une revue hal-03684658 v1

Current status of PTMs structural databases: applications, limitations and prospects

Alexandre de Brevern , Joseph Rebehmed
Amino Acids, 2022, 54 (4), pp.575-590. ⟨10.1007/s00726-021-03119-z⟩
Article dans une revue hal-03690712 v1
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Analysis of Integrin αIIb Subunit Dynamics Reveals Long-Range Effects of Missense Mutations on Calf Domains

Sali Anies , Vincent Jallu , Julien Diharce , Tarun J Narwani , Alexandre G de Brevern
International Journal of Molecular Sciences, 2022, 23 (2), pp.858. ⟨10.3390/ijms23020858⟩
Article dans une revue hal-03542900 v1

Prediction of structural alphabet protein blocks using data mining

Mirjana Maljković , Nenad Mitić , Alexandre de Brevern
Biochimie, 2022, 197, pp.74-85. ⟨10.1016/j.biochi.2022.01.019⟩
Article dans une revue hal-03652564 v1
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VHH Structural Modelling Approaches: A Critical Review

Poonam Vishwakarma , Akhila Melarkode Vattekatte , Nicolas Shinada , Julien Diharce , Carla Martins et al.
International Journal of Molecular Sciences, 2022, 23 (7), pp.3721. ⟨10.3390/ijms23073721⟩
Article dans une revue hal-03665842 v1

SWORD2: hierarchical analysis of protein 3D structures

Gabriel Cretin , Tatiana Galochkina , Yann Vander Meersche , Alexandre G de Brevern , Guillaume Postic et al.
Nucleic Acids Research, 2022, 50 (W1), pp.W732--W738. ⟨10.1093/nar/gkac370⟩
Article dans une revue hal-03738483 v1

Hierarchical Structure of Protein Sequence

Alexei Nekrasov , Yuri Kozmin , Sergey Kozyrev , Rustam Ziganshin , Alexandre de Brevern et al.
International Journal of Molecular Sciences, 2021, 22 (15), pp.8339. ⟨10.3390/ijms22158339⟩
Article dans une revue hal-03538152 v1

Conformational Strain Indicated by Ramachandran Angles for the Protein Backbone Is Only Weakly Related to the Flexibility

Ashraya Ravikumar , Alexandre de Brevern , Narayanaswamy Srinivasan
Journal of Physical Chemistry B, 2021, 125 (10), pp.2597-2606. ⟨10.1021/acs.jpcb.1c00168⟩
Article dans une revue hal-03549944 v1
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A Review of the Literature Organized Into a New Database: RHeference

Aline Floch , Stéphane Téletchéa , Christophe Tournamille , Alexandre de Brevern , France Pirenne
Transfusion Medicine Reviews, 2021, 35 (2), pp.70-77. ⟨10.1016/j.tmrv.2021.04.002⟩
Article dans une revue inserm-03253477 v1
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Transient association between proteins elicits alteration of dynamics at sites far away from interfaces

Himani Tandon , Alexandre de Brevern , Narayanaswamy Srinivasan
Structure, 2021, 29 (4), pp.371-384.e3. ⟨10.1016/j.str.2020.11.015⟩
Article dans une revue inserm-03543689 v1

PYTHIA: Deep Learning Approach for Local Protein Conformation Prediction

Gabriel Cretin , Tatiana Galochkina , Alexandre de Brevern , Jean-Christophe Gelly
International Journal of Molecular Sciences, 2021, 22 (16), pp.8831. ⟨10.3390/ijms22168831⟩
Article dans une revue hal-03822577 v1

Insights into Comparative Modeling of VHH Domains

Akhila Melarkode Vattekatte , Frédéric Cadet , Jean-Christophe Gelly , Alexandre de Brevern
International Journal of Molecular Sciences, 2021, 22 (18), pp.9771. ⟨10.3390/ijms22189771⟩
Article dans une revue hal-03537422 v1
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Insights into anti‐D formation in carriers of RhD variants through studies of 3D intraprotein interactions

Aline Floch , France Pirenne , Aurélie Barrault , Btissam Chami , Cécile Toly‐ndour et al.
Transfusion, 2021, 61 (4), pp.1286-1301. ⟨10.1111/trf.16301⟩
Article dans une revue inserm-03253510 v1

Structural and evolutionary exploration of the IL-3 family and its alpha subunit receptors

Jade Fogha , Jagadeesh Bayry , Julien Diharce , Alexandre de Brevern
Amino Acids, 2021, 53 (8), pp.1211-1227. ⟨10.1007/s00726-021-03026-3⟩
Article dans une revue hal-03538521 v1
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ABCG2 Is Overexpressed on Red Blood Cells in Ph-Negative Myeloproliferative Neoplasms and Potentiates Ruxolitinib-Induced Apoptosis

Ralfs Buks , Mégane Brusson , Sylvie Cochet , Tatiana Galochkina , Bruno Cassinat et al.
International Journal of Molecular Sciences, 2021, 22 (7), pp.3530. ⟨10.3390/ijms22073530⟩
Article dans une revue hal-03531056 v1
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Accurate Representation of Protein-Ligand Structural Diversity in the Protein Data Bank (PDB)

Nicolas K Shinada , Peter Schmidtke , Alexandre de Brevern
International Journal of Molecular Sciences, 2020, 21 (6), pp.2243. ⟨10.3390/ijms21062243⟩
Article dans une revue inserm-02907370 v1
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Analysis of Protein Disorder Predictions in the Light of a Protein Structural Alphabet

Alexandre de Brevern
Biomolecules, 2020, 10 (7), pp.1080. ⟨10.3390/biom10071080⟩
Article dans une revue inserm-02907391 v1
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Data set of intrinsically disordered proteins analysed at a local protein conformation level

Akhila Melarkode Vattekatte , Tarun Jairaj Narwani , Aline Floch , Mirjana Maljković , Soubika Bisoo et al.
Data in Brief, 2020, 29, pp.105383. ⟨10.1016/j.dib.2020.105383⟩
Article dans une revue inserm-02907359 v1
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Investigating the Product Profiles and Structural Relationships of New Levansucrases with Conventional and Non-Conventional Substrates

Andrea Hill , Salwa Karboune , Tarun Narwani , Alexandre de Brevern
International Journal of Molecular Sciences, 2020, 21 (15), pp.5402. ⟨10.3390/ijms21155402⟩
Article dans une revue inserm-02913693 v1
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A structural entropy index to analyse local conformations in intrinsically disordered proteins

Akhila Melarkode Vattekatte , Tarun Jairaj Narwani , Aline Floch , Mirjana Maljković , Soubika Bisoo et al.
Journal of Structural Biology, 2020, 210 (1), pp.107464. ⟨10.1016/j.jsb.2020.107464⟩
Article dans une revue inserm-02907335 v1
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Discrete analysis of camelid variable domains: sequences, structures, and in-silico structure prediction

Akhila Melarkode Vattekatte , Nicolas Ken Shinada , Tarun J Narwani , Floriane Noël , Olivier Bertrand et al.
PeerJ, 2020, 8, pp.e8408. ⟨10.7717/peerj.8408⟩
Article dans une revue inserm-02907323 v1
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In silico prediction of protein flexibility with local structure approach

Tarun J. Narwani , Catherine Etchebest , Pierrick Craveur , Sylvain Léonard , Joseph Rebehmed et al.
Biochimie, 2019, 165, pp.150-155. ⟨10.1016/j.biochi.2019.07.025⟩
Article dans une revue inserm-02266143 v1
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Structural variations within proteins can be as large as variations observed across their homologues

Iyanar Vetrivel , Alexandre de Brevern , Frédéric Cadet , Narayanaswamy Srinivasan , Bernard Offmann
Biochimie, 2019, 167, pp.162-170. ⟨10.1016/j.biochi.2019.09.013⟩
Article dans une revue inserm-02913845 v1
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Benchmarking the PEPOP methods for mimicking discontinuous epitopes

Vincent Demolombe , Alexandre de Brevern , Franck Molina , Géraldine Lavigne , Claude Granier et al.
BMC Bioinformatics, 2019, 20 (1), pp.738. ⟨10.1186/s12859-019-3189-3⟩
Article dans une revue hal-02787607 v2
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Halogens in Protein−Ligand Binding Mechanism: A Structural Perspective

Nicolas Shinada , Alexandre de Brevern , Peter Schmidtke
Journal of Medicinal Chemistry, 2019, 62 (21), pp.9341-9356. ⟨10.1021/acs.jmedchem.8b01453⟩
Article dans une revue inserm-02913756 v1
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PEPOP 2.0: new approaches to mimic non-continuous epitopes

Vincent Demolombe , Alexandre de Brevern , Liza L. Felicori , Christophe Nguyen , Ricardo Andrez Machado de Avila et al.
BMC Bioinformatics, 2019, 20 (1), ⟨10.1186/s12859-019-2867-5⟩
Article dans une revue hal-02277257 v1

Dimerization and phosphorylation of Lutheran/basal cell adhesion molecule are critical for its function in cell migration on laminin

Anna Guadall , Sylvie Cochet , Olivier Renaud , Yves Colin , Caroline Le van Kim et al.
Journal of Biological Chemistry, 2019, 294 (41), pp.14911-14921. ⟨10.1074/jbc.RA119.007521⟩
Article dans une revue hal-02416861 v1
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Long-range molecular dynamics show that inactive forms of Protein Kinase A are more dynamic than active forms

R. Kalaivani , T. J Narwani , Alexandre de Brevern , N. Srinivasan
Protein Science, 2019, 28 (3), pp.543-560. ⟨10.1002/pro.3556⟩
Article dans une revue inserm-02913871 v1
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Discrete analyses of protein dynamics

Akhila Melarkode Vattekatte , Tarun Jairaj Narwani , Pierrick Craveur , Nicolas K Shinada , Aline Floch et al.
Journal of Biomolecular Structure and Dynamics, 2019, pp.1-15. ⟨10.1080/07391102.2019.1650112⟩
Article dans une revue inserm-02266159 v1

Prediction of the intestinal resistome by a three-dimensional structure-based method

Etienne Ruppé , Amine Ghozlane , Julien Tap , Nicolas Pons , Anne-Sophie Alvarez et al.
Nature Microbiology, 2019, 4 (1), pp.112-123. ⟨10.1038/s41564-018-0292-6⟩
Article dans une revue pasteur-02552015 v1
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Investigation of the impact of PTMs on the protein backbone conformation

Pierrick Craveur , Tarun Narwani , Joseph Rebehmed , Alexandre de Brevern
Amino Acids, 2019, 51 (7), pp.1065-1079. ⟨10.1007/s00726-019-02747-w⟩
Article dans une revue inserm-02266176 v1
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Short in-Frame Insertions/Deletions in the Coding Sequence of the α-Globin Gene. Consequences of the 3D Structure and Resulting Phenotypes: Hb Choisy as an Example

Henri Wajcman , Alexandre de Brevern , Jean Riou , Céline Latouche , Michael C. Marden et al.
Hemoglobin, 2019, 42 (5-6), pp.287-293. ⟨10.1080/03630269.2018.1556683⟩
Article dans une revue inserm-02913864 v1
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A minimum set of stable blocks for rational design of polypeptide chains Running head: A set of stable blocks for protein rational design

Alexei N Nekrasov , Ludmila G Alekseeva , Rudolf А. Pogosyan , Dmitry A Dolgikh , M.P. P Kirpichnikov et al.
Biochimie, 2019, 160, pp.88-92. ⟨10.1016/j.biochi.2019.02.006⟩
Article dans une revue inserm-02266188 v1
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iPBAvizu: a PyMOL plugin for an efficient 3D protein structure superimposition approach

Guilhem Faure , Agnel Praveen Joseph , Pierrick Craveur , Tarun Narwani , Narayanaswamy Srinivasan et al.
Source Code for Biology and Medicine, 2019, 14 (1), ⟨10.1186/s13029-019-0075-3⟩
Article dans une revue inserm-02913723 v1
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Same but not alike: Structure, flexibility and energetics of domains in multi-domain proteins are influenced by the presence of other domains

Sneha Vishwanath , Alexandre de Brevern , Narayanaswamy Srinivasan
PLoS Computational Biology, 2018, 14 (2), pp.e1006008. ⟨10.1371/journal.pcbi.1006008⟩
Article dans une revue inserm-02147944 v1
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Analysing the Structural Effect of Point Mutations of Cytotoxic Necrotizing Factor 1 (CNF1) on Lu/BCAM Adhesion Glycoprotein Association

Alexandre de Brevern
Toxins, 2018, 10 (3), pp.E122. ⟨10.3390/toxins10030122⟩
Article dans une revue inserm-01852766 v1

Protein local conformations at the light of a structural alphabet

Alexandre de Brevern
Biophysical Journal, 2018, 114 (3), pp.231A. ⟨10.1016/j.bpj.2017.11.1286⟩
Article dans une revue inserm-01852960 v1
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Dynamics and deformability of α-, 310- and π-helices

Tarun Narwani , Pierrick Craveur , Nicolas Shinada , Hubert Santuz , Joseph Rebehmed et al.
Archives of Biological Science, 2018, 70 (1), pp.21-31. ⟨10.2298/ABS170215022N⟩
Article dans une revue inserm-01585114 v1
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Molecular characterization of 13 new RHD alleles

Aline Floch , Aurelie Barrault , Alexandre de Brevern , Jennifer Martret , Kevin Gaillard et al.
Transfusion, 2017, 57 (4), pp. 1089-1091. ⟨10.1111/trf.14004⟩
Article dans une revue hal-01627823 v1
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Recent advances on polyproline II.

Tarun Jairaj Narwani , Hubert Santuz , Nicolas Shinada , Akhila Melarkode Vattekatte , Yassine Ghouzam et al.
Amino Acids, 2017, 49 (4), pp.705-713. ⟨10.1007/s00726-017-2385-6⟩
Article dans une revue inserm-01573940 v1
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Knowledge-based prediction of protein backbone conformation using a structural alphabet

Iyanar Vetrivel , Swapnil Mahajan , Manoj Tyagi , Lionel Hoffmann , Yves-Henri Sanejouand et al.
PLoS ONE, 2017, 12 (11), pp.e0186215. ⟨10.1371/journal.pone.0186215⟩
Article dans une revue hal-01677391 v1
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Global analysis of VHHs framework regions with a structural alphabet

Floriane Noël , Alain Malpertuy , Alexandre de Brevern
Biochimie, 2016, 131, pp.11 - 19. ⟨10.1016/j.biochi.2016.09.005⟩
Article dans une revue inserm-01374633 v1
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Extension of the classical classification of β-turns

Alexandre de Brevern
Scientific Reports, 2016, pp.33191 ⟨10.1038/srep33191⟩
Article dans une revue inserm-01374651 v1

Use of a structural alphabet to find compatible folds for amino acid sequences

Swapnil Mahajan , Alexandre de Brevern , Yves-Henri Sanejouand , Narayanaswamy Srinivasan , Bernard Offmann
Protein Science, 2015, 24 (1), pp.145 - 153. ⟨10.1002/pro.2581⟩
Article dans une revue hal-01677393 v1
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Bioinformatic analysis of the protein/DNA interface.

Bohdan Schneider , Jirí Cerny , Daniel Svozil , Petr Cech , Jean-Christophe Gelly et al.
Nucleic Acids Research, 2014, 42 (5), pp.3381-94. ⟨10.1093/nar/gkt1273⟩
Article dans une revue inserm-00926088 v1
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mulPBA: an efficient multiple protein structure alignment method based on a structural alphabet.

Sylvain Léonard , Agnel Praveen Joseph , Narayanaswamy Srinivasan , Jean-Christophe Gelly , Alexandre de Brevern
Journal of Biomolecular Structure and Dynamics, 2014, 32 (4), pp.661-8. ⟨10.1080/07391102.2013.787026⟩
Article dans une revue inserm-00926338 v1
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Correlation between local structural dynamics of proteins inferred from NMR ensembles and evolutionary dynamics of homologues of known structure.

Swapnil Mahajan , Alexandre de Brevern , Bernard Offmann , Narayanaswamy Srinivasan
Journal of Biomolecular Structure and Dynamics, 2014, 32 (5), pp.751-8. ⟨10.1080/07391102.2013.789989⟩
Article dans une revue inserm-00926204 v1
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Understanding the role of domain-domain linkers in the spatial orientation of domains in multi-domain proteins.

Ramachandra M Bhaskara , Alexandre de Brevern , Narayanaswamy Srinivasan
Journal of Biomolecular Structure and Dynamics, 2013, 31 (12), pp.1467-80. ⟨10.1080/07391102.2012.743438⟩
Article dans une revue inserm-00926595 v1
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VLDP web server: a powerful geometric tool for analysing protein structures in their environment.

Jérémy Esque , Sylvain Léonard , Alexandre de Brevern , Christophe Oguey
Nucleic Acids Research, 2013, 41 (Web Server issue), pp.W373-8. ⟨10.1093/nar/gkt509⟩
Article dans une revue inserm-00926547 v1
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Cis-trans isomerization of omega dihedrals in proteins.

Pierrick Craveur , Agnel Praveen Joseph , Pierre Poulain , Joseph Rebehmed , Alexandre de Brevern
Amino Acids, 2013, 45 (2), pp.279-89. ⟨10.1007/s00726-013-1511-3⟩
Article dans une revue istex inserm-00926521 v1
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Evolution study of the Baeyer-Villiger monooxygenases enzyme family: functional importance of the highly conserved residues.

Joseph Rebehmed , Véronique Alphand , Véronique de Berardinis , Alexandre de Brevern
Biochimie, 2013, 95 (7), pp.1394-402. ⟨10.1016/j.biochi.2013.03.005⟩
Article dans une revue inserm-00926584 v1
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DoSA: Database of Structural Alignments.

Swapnil Mahajan , Garima Agarwal , Mohammed Iftekhar , Bernard Offmann , Alexandre de Brevern et al.
Database - The journal of Biological Databases and Curation, 2013, 2013, pp.bat048. ⟨10.1093/database/bat048⟩
Article dans une revue inserm-00926452 v1
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β-Bulges: extensive structural analyses of β-sheets irregularities.

Pierrick Craveur , Agnel Praveen Joseph , Joseph Rebehmed , Alexandre de Brevern
Protein Science, 2013, 22 (10), pp.1366-78. ⟨10.1002/pro.2324⟩
Article dans une revue inserm-00926388 v1
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PRR repeats in the intracellular domain of KISS1R are important for its export to cell membrane.

Lucie Chevrier , Alexandre de Brevern , Eva Hernandez , Jérome Leprince , Hubert Vaudry et al.
Mol Endocrinol, 2013, 27 (6), pp.1004-14. ⟨10.1210/me.2012-1386⟩
Article dans une revue inserm-00926577 v1
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Selective constraint on human pre-mRNA splicing by protein structural properties.

Jean-Christophe Gelly , Hsuan-Yu Lin , Alexandre de Brevern , Trees-Juen Chuang , Feng-Chi Chen
Genome Biology and Evolution, 2012, 4 (9), pp.966-75. ⟨10.1093/gbe/evs071⟩
Article dans une revue inserm-00750397 v1
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Comparison of tertiary structures of proteins in protein-protein complexes with unbound forms suggests prevalence of allostery in signalling proteins.

Lakshmipuram S. Swapna , Swapnil Mahajan , Alexandre de Brevern , Narayanaswamy Srinivasan
BMC Structural Biology, 2012, 12 (1), pp.6. ⟨10.1186/1472-6807-12-6⟩
Article dans une revue inserm-00725334 v1
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Cis-trans peptide variations in structurally similar proteins.

Agnel Praveen Joseph , Narayanaswamy Srinivasan , Alexandre de Brevern
Amino Acids, 2012, 43 (3), pp.1369-81. ⟨10.1007/s00726-011-1211-9⟩
Article dans une revue inserm-00680773 v1
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Local structural differences in homologous proteins: specificities in different SCOP classes.

Agnel Praveen Joseph , Hélène Valadié , Narayanaswamy Srinivasan , Alexandre de Brevern
PLoS ONE, 2012, 7 (6), pp.e38805. ⟨10.1371/journal.pone.0038805⟩
Article dans une revue inserm-00750286 v1
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Modeling and molecular dynamics of HPA-1a and -1b polymorphisms: effects on the structure of the β3 subunit of the αIIbβ3 integrin.

Vincent Jallu , Pierre Poulain , Patrick F. J. Fuchs , Cécile Kaplan , Alexandre de Brevern
PLoS ONE, 2012, 7 (11), pp.e47304. ⟨10.1371/journal.pone.0047304⟩
Article dans une revue inserm-00926600 v1
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PredyFlexy: flexibility and local structure prediction from sequence.

Alexandre de Brevern , Aurélie Bornot , Pierrick Craveur , Catherine Etchebest , Jean-Christophe Gelly
Nucleic Acids Research, 2012, 40 (Web Server issue), pp.W317-22. ⟨10.1093/nar/gks482⟩
Article dans une revue inserm-00750270 v1
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Progressive structure-based alignment of homologous proteins: Adopting sequence comparison strategies.

Agnel Praveen Joseph , Narayanaswamy Srinivasan , Alexandre de Brevern
Biochimie, 2012, 94 (9), pp.2025-34. ⟨10.1016/j.biochi.2012.05.028⟩
Article dans une revue inserm-00750325 v1
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Species specific amino acid sequence-protein local structure relationships: An analysis in the light of a structural alphabet.

Alexandre de Brevern , Agnel Praveen Joseph
Journal of Theoretical Biology, 2011, 276 (1), pp.209-17. ⟨10.1016/j.jtbi.2011.01.047⟩
Article dans une revue inserm-00646218 v1
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Species specific amino acid sequence - Protein local structure relationships: An analysis in the light of a structural alphabet

Alexandre de Brevern , Agnel Praveen Joseph , Hélène Valadié
Journal of Theoretical Biology, 2011, 276 (1), pp.209. ⟨10.1016/j.jtbi.2011.01.047⟩
Article dans une revue hal-00682413 v1
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Le cahier de laboratoire électronique (CLE)

Anabelle Amiard , Céline Baczynski , Christophe Blanchet , Alexandre de Brevern , Emmanuelle Dorlanne-Messiaen et al.
STP Pharma Pratiques, 2011, 21 (6), pp.475-503
Article dans une revue inserm-00680791 v1
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Predicting protein flexibility through the prediction of local structures.

Aurélie Bornot , Catherine Etchebest , Alexandre de Brevern
Proteins - Structure, Function and Bioinformatics, 2011, 79 (3), pp.839-52. ⟨10.1002/prot.22922⟩
Article dans une revue inserm-00568171 v1
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Improvement of protein structure comparison using a structural alphabet.

Agnel Praveen Joseph , Narayanaswamy Srinivasan , Alexandre de Brevern
Biochimie, 2011, 93 (9), pp.1434-45. ⟨10.1016/j.biochi.2011.04.010⟩
Article dans une revue inserm-00646245 v1
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Identification of local conformational similarity in structurally variable regions of homologous proteins using protein blocks.

Garima Agarwal , Swapnil Mahajan , Narayanaswamy Srinivasan , Alexandre de Brevern
PLoS ONE, 2011, 6 (3), pp.e17826. ⟨10.1371/journal.pone.0017826⟩
Article dans une revue inserm-00586691 v1
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iPBA: a tool for protein structure comparison using sequence alignment strategies.

Jean-Christophe Gelly , Agnel Praveen Joseph , Narayanaswamy Srinivasan , Alexandre de Brevern
Nucleic Acids Research, 2011, 39 (Web Server issue), pp.W18-23. ⟨10.1093/nar/gkr333⟩
Article dans une revue inserm-00646241 v1
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Protein Peeling 3D: new tools for analyzing protein structures.

Jean-Christophe Gelly , Alexandre de Brevern
Bioinformatics, 2011, 27 (1), pp.132-3. ⟨10.1093/bioinformatics/btq610⟩
Article dans une revue inserm-00568165 v1
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Assignment of PolyProline II Conformation and Analysis of Sequence - Structure Relationship.

Yohann Mansiaux , Agnel Praveen Joseph , Jean-Christophe Gelly , Alexandre de Brevern
PLoS ONE, 2011, 6 (3), pp.e18401. ⟨10.1371/journal.pone.0018401⟩
Article dans une revue inserm-00586725 v1
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Comparative analysis of threshold and tessellation methods for determining protein contacts.

Jeremy Esque , Christophe Oguey , Alexandre de Brevern
Journal of Chemical Information and Modeling, 2011, 51 (2), pp.493-507. ⟨10.1021/ci100195t⟩
Article dans une revue inserm-00568174 v1
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A novel evaluation of residue and protein volumes by means of Laguerre tessellation.

Jeremy Esque , Christophe Oguey , Alexandre de Brevern
Journal of Chemical Information and Modeling, 2010, 50 (5), pp.947-60. ⟨10.1021/ci9004892⟩
Article dans une revue inserm-00473943 v1
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A short survey on protein blocks.

Agnel Joseph , Garima Agarwal , Swapnil Mahajan , Jean-Christophe Gelly , Lakshmipuram S. Swapna et al.
Biophysical Reviews, 2010, 2 (3), pp.137-147. ⟨10.1007/s12551-010-0036-1⟩
Article dans une revue inserm-00512823 v1
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Observer avec un nouvel oeil la structure des protéines et leur flexibilité.

Alexandre de Brevern
Regard sur la biochimie, 2010, 2010 (4), pp.3
Article dans une revue inserm-00557286 v1
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Influence of assignment on the prediction of transmembrane helices in protein structures.

Jean Pylouster , Aurélie Bornot , Catherine Etchebest , Alexandre de Brevern
Amino Acids, 2010, 39 (5), pp.1241-54. ⟨10.1007/s00726-010-0559-6⟩
Article dans une revue istex inserm-00472869 v1
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Comparative analysis of missing value imputation methods to improve clustering and interpretation of microarray experiments.

Magalie Celton , Alain Malpertuy , Gaëlle Lelandais , Alexandre de Brevern
BMC Genomics, 2010, 11 (1), pp.15. ⟨10.1186/1471-2164-11-15⟩
Article dans une revue inserm-00663912 v1
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A recombinant dromedary antibody fragment (VHH or nanobody) directed against human Duffy antigen receptor for chemokines.

Dorota Smolarek , Claude Hattab , Gholamreza Hassanzadeh-Ghassabeh , Sylvie Cochet , Carlos Gutiérrez et al.
Cellular and Molecular Life Sciences, 2010, 67 (19), pp.3371-87. ⟨10.1007/s00018-010-0387-6⟩
Article dans une revue inserm-00512838 v1
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Multiple interests in structural models of DARC transmembrane protein.

Dorota Smolarek , Olivier Bertrand , Marcin Czerwinski , Yves Colin , Catherine Etchebest et al.
Transfusion Clinique et Biologique, 2010, 17 (3), pp.184-96. ⟨10.1016/j.tracli.2010.05.003⟩
Article dans une revue inserm-00506537 v1
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Fast and automated functional classification with MED-SuMo: an application on purine-binding proteins.

Olivia Doppelt-Azeroual , François Delfaud , Fabrice Moriaud , Alexandre de Brevern
Protein Science, 2010, 19 (4), pp.847-67. ⟨10.1002/pro.364⟩
Article dans une revue inserm-00458093 v1
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AlphaIIbbeta3 integrin: new allelic variants in Glanzmann thrombasthenia, effects on ITGA2B and ITGB3 mRNA splicing, expression, and structure-function.

Vincent Jallu , Mathilde Dusseaux , Simon Panzer , Marie-Françoise Torchet , Nathalie Hezard et al.
Human Mutation, 2010, 31 (3), pp.237-46. ⟨10.1002/humu.21179⟩
Article dans une revue istex inserm-00448024 v1
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3D Structural Models of Transmembrane Proteins.

Alexandre de Brevern
Methods in Molecular Biology, 2010, 654, pp.387-401. ⟨10.1007/978-1-60761-762-4_20⟩
Article dans une revue inserm-00507094 v1
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A dominant mutation in the gene encoding the erythroid transcription factor KLF1 causes a congenital dyserythropoietic anemia.

Lionel Arnaud , Carole Saison , Virginie Helias , Nicole Lucien , Dominique Steschenko et al.
American Journal of Human Genetics, 2010, 87 (5), pp.721-7. ⟨10.1016/j.ajhg.2010.10.010⟩
Article dans une revue inserm-00550723 v1
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Computational fragment-based drug design to explore the hydrophobic sub-pocket of the mitotic kinesin Eg5 allosteric binding site.

Ksenia Oguievetskaia , Laetitia Martin-Chanas , Artem Vorotyntsev , Olivia Doppelt-Azeroual , Xavier Brotel et al.
Journal of Computer-Aided Molecular Design, 2009, 23 (8), pp.571-82. ⟨10.1007/s10822-009-9286-z⟩
Article dans une revue inserm-00396557 v1
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In Silico Studies on DARC.

Alexandre de Brevern , Ludovic Autin , Yves Colin , Olivier Bertrand , Catherine Etchebest
Infectious disorders drug targets, 2009, 9 (3), pp.289-303
Article dans une revue inserm-00366309 v1
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Analyzing the sequence-structure relationship of a library of local structural prototypes.

Cristina Benros , Alexandre de Brevern , Serge A. Hazout
Journal of Theoretical Biology, 2009, 256 (2), pp.215-26. ⟨10.1016/j.jtbi.2008.08.032⟩
Article dans une revue inserm-00318954 v1
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Analysis of protein chameleon sequence characteristics.

Amine Ghozlane , Agnel Joseph , Aurélie Bornot , Alexandre de Brevern
Bioinformation, 2009, 3 (9), pp.367-9
Article dans une revue inserm-00353122 v1
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Editorial for Infectious Diseases - Drug Targets (in silico issue)

Alexandre de Brevern
Infectious disorders drug targets, 2009, 9 (3), pp.246-7
Article dans une revue inserm-00395256 v1
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A new prediction strategy for long local protein structures using an original description.

Aurélie Bornot , Catherine Etchebest , Alexandre de Brevern
Proteins - Structure, Function and Bioinformatics, 2009, 76 (3), pp.570-87. ⟨10.1002/prot.22370⟩
Article dans une revue inserm-00348740 v1
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Protein short loop prediction in terms of a structural alphabet.

Manoj Tyagi , Aurélie Bornot , Bernard Offmann , Alexandre de Brevern
Computational Biology and Chemistry, 2009, 33 (4), pp.329-33. ⟨10.1016/j.compbiolchem.2009.06.002⟩
Article dans une revue inserm-00396485 v1
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Analysis of protein contacts into Protein Units.

Guilhem Faure , Aurélie Bornot , Alexandre de Brevern
Biochimie, 2009, 91 (7), pp.876-87. ⟨10.1016/j.biochi.2009.04.008⟩
Article dans une revue inserm-00375095 v1
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Analysis of HSP90-related folds with MED-SuMo classification approach.

Olivia Doppelt-Azeroual , Fabrice Moriaud , François Delfaud , Alexandre de Brevern
Drug Design, Development and Therapy, 2009, 3, pp.59-72
Article dans une revue inserm-00348737 v1
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Analysis of loop boundaries using different local structure assignment methods.

Manoj Tyagi , Aurélie Bornot , Bernard Offmann , Alexandre de Brevern
Protein Science, 2009, 18 (9), pp.1869-81. ⟨10.1002/pro.198⟩
Article dans une revue inserm-00392504 v1
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Protein contacts, inter-residue interactions and side-chain modelling.

Guilhem Faure , Aurélie Bornot , Alexandre de Brevern
Biochimie, 2008, 90 (4), pp.626-39. ⟨10.1016/j.biochi.2007.11.007⟩
Article dans une revue inserm-00189828 v1
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In silico local structure approach: A case study on Outer Membrane Proteins.

Juliette Martin , Alexandre de Brevern , Anne-Claude Camproux
Proteins - Structure, Function and Bioinformatics, 2008, 71 (1), pp.92-109. ⟨10.1002/prot.21659⟩
Article dans une revue inserm-00176452 v1
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How flexible protein structures are? New questions on the protein structure plasticity.

Aurélie Bornot , Bernard Offmann , Alexandre de Brevern
BioForum Europe, 2007, 11, pp.24
Article dans une revue inserm-00189079 v1
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Local Protein Structures

Bernard Offmann , Manoj Tyagi , Alexandre de Brevern
Current Bioinformatics, 2007, 2, pp.165-202
Article dans une revue inserm-00175058 v1
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A reduced amino acid alphabet for understanding and designing protein adaptation to mutation.

Catherine Etchebest , Cristina Benros , Aurélie Bornot , Anne-Claude Camproux , Alexandre de Brevern
European Biophysics Journal, 2007, 36 (8), pp.1059-69. ⟨10.1007/s00249-007-0188-5⟩
Article dans une revue istex inserm-00155390 v1
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Protein structure mining using a structural alphabet.

Manoj Tyagi , Alexandre de Brevern , Narayanaswamy Srinivasan , Bernard Offmann
Proteins - Structure, Function and Bioinformatics, 2007, 71 (2), pp.920-937. ⟨10.1002/prot.21776⟩
Article dans une revue istex inserm-00176443 v1
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Pinning strategy": a novel approach for predicting the backbone structure in terms of protein blocks from sequence.

Alexandre de Brevern , Catherine Etchebest , Cristina Benros , Serge A. Hazout
Journal of Biosciences, 2007, 32 (1), pp.51-70
Article dans une revue inserm-00143368 v1
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Functional annotation strategy for protein structures

Olivia Doppelt , Fabrice Moriaud , Aurélie Bornot , Alexandre de Brevern
Bioinformation, 2007, 1 (9), pp.357-359
Article dans une revue inserm-00143366 v1
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A substitution matrix for structural alphabet based on structural alignment of homologous proteins and its applications.

Manoj Tyagi , Venkataraman S. Gowri , Narayanaswamy Srinivasan , Alexandre de Brevern , Bernard Offmann
Proteins - Structure, Function and Bioinformatics, 2006, 65 (1), pp.32-9. ⟨10.1002/prot.21087⟩
Article dans une revue istex inserm-00133760 v1
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Assessing a novel approach for predicting local 3D protein structures from sequence.

Cristina Benros , Alexandre de Brevern , Catherine Etchebest , Serge A. Hazout
Proteins - Structure, Function and Bioinformatics, 2006, 62 (4), pp.865-80. ⟨10.1002/prot.20815⟩
Article dans une revue istex inserm-00133180 v1
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Protein beta-turn assignments.

Aurélie Bornot , Alexandre de Brevern
Bioinformation, 2006, 1 (5), pp.153-5
Article dans une revue inserm-00133658 v1
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Protein Peeling': an approach for splitting a 3D protein structure into compact fragments.

Jean-Christophe Gelly , Alexandre de Brevern , Serge A. Hazout
Bioinformatics, 2006, 22 (2), pp.129-33. ⟨10.1093/bioinformatics/bti773⟩
Article dans une revue inserm-00133725 v1
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Protein Peeling 2: a web server to convert protein structures into series of protein units.

Jean-Christophe Gelly , Catherine Etchebest , Serge A. Hazout , Alexandre de Brevern
Nucleic Acids Research, 2006, 34 (Web Server issue), pp.W75-8. ⟨10.1093/nar/gkl292⟩
Article dans une revue inserm-00133731 v1
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Protein Block Expert (PBE): a web-based protein structure analysis server using a structural alphabet.

Manoj Tyagi , Priyanka Sharma , C. S. Swamy , Frédéric Cadet , N. Srinivasan et al.
Nucleic Acids Research, 2006, 34 (Web Server issue), pp.W119-23. ⟨10.1093/nar/gkl199⟩
Article dans une revue inserm-00133751 v1
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A structural alphabet for local protein structures: improved prediction methods.

Catherine Etchebest , Cristina Benros , Serge A. Hazout , Alexandre de Brevern
Proteins - Structure, Function and Bioinformatics, 2005, 59 (4), pp.810-27. ⟨10.1002/prot.20458⟩
Article dans une revue istex inserm-00143564 v1
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Protein secondary structure assignment revisited: a detailed analysis of different assignment methods.

Juliette Martin , Guillaume Letellier , Antoine Marin , Jean-François Taly , Alexandre de Brevern et al.
BMC Structural Biology, 2005, 5 (17), pp.17. ⟨10.1186/1472-6807-5-17⟩
Article dans une revue inserm-00090199 v1
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New assessment of a structural alphabet.

Alexandre de Brevern
In Silico Biol, 2005, 5 (3), pp.283-9
Article dans une revue inserm-00132875 v1
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A structural model of a seven-transmembrane helix receptor: the Duffy antigen/receptor for chemokine (DARC).

Alexandre de Brevern , H. Wong , Christophe Tournamille , Yves Colin , Caroline Le van Kim et al.
BBA - Biochimica et Biophysica Acta, 2005, 1724 (3), pp.288-306. ⟨10.1016/j.bbagen.2005.05.016⟩
Article dans une revue inserm-00143373 v1
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Influence of microarrays experiments missing values on the stability of gene groups by hierarchical clustering.

Alexandre de Brevern , Serge A. Hazout , Alain Malpertuy
BMC Bioinformatics, 2004, 5, pp.114. ⟨10.1186/1471-2105-5-114⟩
Article dans une revue inserm-00000113 v1
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Local backbone structure prediction of proteins.

Alexandre de Brevern , Cristina Benros , Romain Gautier , Hélène Valadié , Serge A. Hazout et al.
In Silico Biology, 2004, 4 (3), pp.381-6
Article dans une revue inserm-00132872 v1
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Use of a structural alphabet for analysis of short loops connecting repetitive structures.

Laurent Fourrier , Cristina Benros , Alexandre de Brevern
BMC Bioinformatics, 2004, 5, pp.58. ⟨10.1186/1471-2105-5-58⟩
Article dans une revue inserm-00112104 v1
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Hybrid protein model' for optimally defining 3D protein structure fragments.

Alexandre de Brevern , Serge A. Hazout
Bioinformatics, 2003, 19 (3), pp.345-53. ⟨10.1093/bioinformatics/btf859⟩
Article dans une revue inserm-00133632 v1
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Extension of a local backbone description using a structural alphabet: a new approach to the sequence-structure relationship.

Alexandre de Brevern , Hélène Valadié , Serge A. Hazout , Catherine Etchebest
Protein Science, 2002, 11 (12), pp.2871-86
Article dans une revue inserm-00143374 v1
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Compartimentation chromosomique

Alexandre de Brevern
Biofutur, 2002, 225, pp.20-22
Article dans une revue inserm-00132826 v1
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Genome compartimentation by a hybrid chromosome model (HXM). Application to Saccharomyces cerevisae subtelomeres

Alexandre de Brevern , France Loirat , Anne Badel-Chagnon , Cécile André , Pierre Vincens et al.
Comput Chem, 2002, 26 (5), pp.437-45. ⟨10.1016/S0097-8485(02)00006-2⟩
Article dans une revue istex inserm-00143383 v1
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Exploring the use of a structural alphabet for a structural prediction of protein loops

Anne-Claude Camproux , Alexandre de Brevern , Serge A. Hazout , Pierre Tufféry
Theoretical Chemistry Accounts: Theory, Computation, and Modeling, 2001, 106 (1/2), pp.28-35. ⟨10.1007/s002140100261⟩
Article dans une revue istex inserm-00134555 v1
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Compacting local protein folds with a Hybrid Protein

Alexandre de Brevern , Serge A. Hazout
Theoretical Chemistry Accounts: Theory, Computation, and Modeling, 2001, 106 (1/2), pp.36-47. ⟨10.1007/s002140000227⟩
Article dans une revue istex inserm-00132867 v1
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Bayesian probabilistic approach for predicting backbone structures in terms of protein blocks.

Alexandre de Brevern , Catherine Etchebest , Serge A. Hazout
Proteins - Structure, Function and Bioinformatics, 2000, 41 (3), pp.271-87
Article dans une revue inserm-00132821 v1

Structural and sequence investigations of regioselectivity and substrate specificity in a family of enzymes: the case study of ubiquinone biosynthesis hydroxylases

Elin Teppa , Romain Launay , Alexandre de Brevern , William Schmitt , Ivan Junier et al.
Journées du GDR Bioinformatique Moléculaire, GT MASIM, Nov 2021, Lyon, France
Communication dans un congrès hal-04785151 v1
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Analysis of allosteric effect of pathologic variants at the light of local protein conformations

Alexandre de Brevern
Belgrade BioInformatics Conference – BelBi 2018, Jun 2018, Belgrade, Serbia
Communication dans un congrès inserm-01853665 v1
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Dynamics and deformability of α-, 310- and π-helices

Nicolas Shinada , Tarun Jairaj Narwani , Pierrick Craveur , Hubert Santuz , Joseph Rebehmed et al.
20e congrès du GGMM (groupe de graphisme et modélisation moléculaire), May 2017, Reims, France
Communication dans un congrès inserm-01581259 v1
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Protein structure analysis, prediction and flexibility in the light of a structural alphabet

Alexandre de Brevern
1ère réunion du GT MASIM du GDR BIM, GDR BIM (CNRS), Nov 2017, Paris, France
Communication dans un congrès inserm-01636581 v1

PB-PENTAdb : a web resource for the analysis and prediction of local backbone structure and flexibility using pentapeptide protein blocks

Bernard Offmann , M. Tyagi , A. Joseph , M. Drula , M. Grondin et al.
9th European Congress on Computation Biology (ECCB10), Sep 2010, Ghent, Belgium
Communication dans un congrès hal-01198468 v1
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Hybrid Protein Model (HPM) : A Method For Building A Library Of Overlapping Local Structural Prototypes. Sensitivity Study And Improvements Of The Training

Cristina Benros , Alexandre de Brevern , Serge Hazout
2003, pp.53-72
Communication dans un congrès inserm-00133639 v1
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Hybrid Protein Model": a new clustering approach for 3D local structures

Cristina Benros , Serge A. Hazout , Alexandre de Brevern
2002, pp.36-45
Communication dans un congrès inserm-00134559 v1
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Hybrid Protein Model (HPM)" : une nouvelle approche pour caractériser les relations séquence-structure dans les protéines

Alexandre de Brevern , Serge A. Hazout
2000, pp.105-112
Communication dans un congrès inserm-00134567 v1
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Hybrid Protein Model (HPM): a method to compact protein 3D-structures information and physicochemical properties.

Alexandre de Brevern , Serge A. Hazout
Communication dans un congrès inserm-00132863 v1
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Analyse par dynamiques moléculaires de 5 types de Calréticuline associée à la thrombocytémie essentielle

Ragousandirane Radjasandirane , Alexandre de Brevern
43e congrès de la Société Française d'Hématologie, Mar 2024, Paris, France
Poster de conférence inserm-04072440 v1
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Evaluation of 50 Computational Tools for Predicting Pathogenicity of Genetic Variants: Unveiling representativeness issues on public datasets

Ragousandirane Radjasandirane , Jean-Christophe Gelly , Julien Diharce , Alexandre de Brevern
International Symposium on Human Genomics, Sep 2023, Paris, France
Poster de conférence hal-04264309 v1
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Analysis of VHH dynamics

Akhila Melarkode Vattekatte , Julien Diharce , Catherine Etchebest , Alexandre de Brevern
67th Biophysical Society Annual Meeting, Feb 2023, San Diego (California), United States
Poster de conférence inserm-04072706 v1

On the turning away

Alexandre de Brevern
20e congrès du GGMM (groupe de graphisme et modélisation moléculaire), Aug 2017, Reims, France. 2017
Poster de conférence inserm-01575727 v1
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On the turning away

Alexandre de Brevern
Joint 25th Annual International Conference on Intelligent Systems for Molecular Biology (ISMB) and 16th European Conference on Computational Biology (ECCB) 2017, Aug 2017, Prague, Czech Republic. , 2017
Poster de conférence inserm-01575565 v1
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Comparative Analysis of Protein -Protein Interface Methods

Alexandre de Brevern , Jérémy Esque
Groupe Graphisme Modélisation Moléculaire (GGMM), May 2017, Reims, France
Poster de conférence inserm-01586501 v1

Modélisation des systèmes biologiques, bioinformatique

Olivier Gascuel , P. Benas , C. Brun , D. Burnouf , Alexandre de Brevern et al.
Rapport de conjoncture 2010 du Comité national de la recherche scientifique, CNRS Editions, chapitre 43, 845-858, 2011, 978-2-271-07263-4
Chapitre d'ouvrage hal-00799641 v1
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A bioinformatic web server to cut protein structures in terms of Protein Units.

Jean-Christophe Gelly , Alexandre de Brevern
Jaclyn E. Morris. Computer Science Research and the Internet, Nova Book Press, pp.169-183, 2011
Chapitre d'ouvrage inserm-00646177 v1
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Local Structure Alphabets

Agnel Joseph , Aurélie Bornot , Alexandre de Brevern
Huzefa Rangwala, George Karypis. Introduction to Protein Structure Prediction: Methods and Algorithms, Wiley, pp.75-106, 2010, ⟨10.1002/9780470882207.ch5⟩
Chapitre d'ouvrage inserm-00557300 v1
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Characterization of Conformational Patterns in Active and Inactive Forms of Kinases Using Protein Blocks Approach.

Garima Agarwal , Dhurvas Chandrasekaran Dinesh , Narayanaswamy Srinivasan , Alexandre de Brevern
Ujjwal Maulik, Sanghamitra Bandyopadhyay, Jason T. L. Wang. Computational Intelligence and Pattern Analysis in Biological Informatics, Wiley, pp.169-188, 2010, ⟨10.1002/9780470872352.ch8⟩
Chapitre d'ouvrage inserm-00557296 v1
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Description of the local protein structure. I. Classical approaches.

Cristina Benros , Juliette Martin , Manoj Tyagi , Alexandre de Brevern
Alexandre G. de Brevern. Recent Advances in Structural Bioinformatics, Research Signpost, Trivandrum, Kerala, India., pp.6-27, 2007
Chapitre d'ouvrage inserm-00176471 v1
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Turns prediction

Patrick Fuchs , Catherine Etchebest , Alexandre de Brevern
Alexandre G. de Brevern. Recent Advances in Structural Bioinformatics, Research Signpost, Trivandrum, Kerala, India., pp.43-63, 2007
Chapitre d'ouvrage inserm-00176710 v1
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Description of the local protein structure. II. Novel approaches.

Manoj Tyagi , Cristina Benros , Juliette Martin , Alexandre de Brevern
Alexandre G. de Brevern. Recent Advances in Structural Bioinformatics, Research Signpost, Trivandrum, Kerala, India., pp.28-42, 2007
Chapitre d'ouvrage inserm-00176668 v1
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Structural Alphabet: From a Local Point of View to a Global Description of Protein 3D Structures

Alexandre de Brevern , Cristina Benros , Serge A. Hazout
Yan, Peter V. Bioinformatics: New Research, Nova publishers, pp.127-69, 2005
Chapitre d'ouvrage inserm-00134564 v1
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Protein structural alphabets: beyond the secondary structure description

Alexandre de Brevern , Anne-Claude Camproux , Serge A. Hazout , Catherine Etchebest , Pierre Tufféry
Sangadai SG. Recent research developments in protein engineering, Research signpost, pp.319-331, 2001
Chapitre d'ouvrage inserm-00133650 v1