Amelie Bernard

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Présentation

Dr Amélie Bernard Born January 5, 1984 in Saint-Lô, Manche

HDR, Accreditation to direct research University of Bordeaux (2023) Doctor in plant biology from University of Bordeaux (2011)

Current position CRCN, group leader at the Laboratory of Membrane Biogenesis, UMR5200 CNRS, University of Bordeaux *Exploring the nature, dynamics and function of lipids in membrane remodelling during plant autophagy and their importance in plant adaptation programs to environmental stress *

Higher studies 2008 - Master in Plant Biology, University of Bordeaux, France 2008-2011 - PhD thesis in plant biology, University of Bordeaux, France 2011-2012 - Postdoctorate in plant biology, Laboratory of Membrane Biogenesis, CNRS, University of Bordeaux, France 2012-2016 - Post-doctorate in cell biology, Klionsky Laboratory, Life Sciences Institute, University of Michigan, Ann Arbor, USA

Research activities 2016 ->: Research Scientist (CR) and group leader (Laboratory of Membrane Biogenesis, CNRS, University of Bordeaux; 2012-2016: Post-doctorate in cell biology, Klionsky Laboratory, Life Sciences Institute, University of Michigan, Ann Arbor, USA Characterization of novel actors and signalling pathways involved in the regulation of autophagy-related genes in S. cerevisiae 2011-2012: Post-doctorate at the Laboratory of Membrane Biogenesis, CNRS, University of Bordeaux, France Study of the ECERIFERUM proteins involved in very-long-chain alkane synthesis in Arabidopsis 2008-2011: Thesis at the Laboratory of Membrane Biogenesis, CNRS, University of Bordeaux, France Characterization of the alkane-forming pathway in Arabidopsis

Research supervision Group leader since 2016. Current group composed of 1 researcher, 1 PhD student, 1 lecturer, 2 research engineers, 2 assistant engineers, 1 technician (in 2024). PhD supervision: 2 Post-docs supervision: 1 Master supervision: 7 Undergraduate student supervision: 3

Publications 33 in peer review journals Oral communications at scientific conferences: 19

Prizes and Rewards 2023: CNRS Bronze Medal

Editorial experience 2023-> Associate editor in Frontiers in Plant Physiology

Major contracts and research funding obtained 2022 – 2024 Emerging project AutoLip2 (How autophagy reshapes lipid metabolism to promote plant acclimation to environmental changes, Idex CNRS/UB), Coordinator, 85k€ 2021 – 2025 Associated investigator of ANR RecovOil (Plant lipid droplets in post-stress recovery; ANR AAPG2021), 450k€ 2020 – 2025 ERC Starting Grant (The missing link: how do membrane lipids interplay with ATG proteins to instruct plant autophagy, LIP-ATG, 852136) Coordinator, 1.5M€ 2018 – 2020 Seed Fund AutoLip1 (Lipids function in plant autophagy, Idex CNRS/UB), Coordinator, 30k€ 2018 – 2019 Seed fund Fédération de Recherche BIE. Co-coordinator, 7k€ 2017 – 2021 Salary for a PhD student, UB, 90 K€


Publications

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Publications

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Biomolecular condensation orchestrates clathrin-mediated endocytosis in plants

Jonathan Michael Dragwidge , Yanning Wang , Lysiane Brocard , Andreas de Meyer , Roman Hudeček et al.
Nature Cell Biology, 2024, 26 (3), pp.438-449. ⟨10.1038/s41556-024-01354-6⟩
Article dans une revue hal-04680984 v1
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HOPping to the vacuole: Autophagosome and late endosomes combine to control plant autophagosome degradation

Jonathan Michael Dragwidge , Amélie Bernard
Developmental Cell, 2024, 59 (17), pp.2273-2274. ⟨10.1016/j.devcel.2024.08.005⟩
Article dans une revue hal-04794740 v1
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Chaperone-mediated autophagy in fish: A key function amid a changing environment

Simon Schnebert , Emilio J. Vélez , Maxime Goguet , Karine Dias , Vincent Veron et al.
Autophagy Reports, 2024, 3 (1), ⟨10.1080/27694127.2024.2403956⟩
Article dans une revue hal-04794731 v1
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Targeting Ultrastructural Events at the Graft Interface of Arabidopsis thaliana by A Correlative Light Electron Microscopy Approach

Clément Chambaud , Sarah J. Cookson , Nathalie Ollat , Amélie Bernard , Lysiane Brocard
Bio-protocol , 2023, 13 (2), pp.e4590. ⟨10.21769/bioprotoc.4590⟩
Article dans une revue hal-04297913 v1
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Phosphatidylinositol-4-phosphate controls autophagosome formation in Arabidopsis thaliana

Rodrigo Enrique Gomez , Clément Chambaud , Josselin Lupette , Julie Castets , Stéphanie Pascal et al.
Nature Communications, 2022, 13 (1), pp.4385. ⟨10.1038/s41467-022-32109-2⟩
Article dans une revue hal-03774766 v1
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SETD2 transcriptional control of ATG14L/S isoforms regulates autophagosome–lysosome fusion

Patricia Gonzalez-Rodriguez , Elizabeth Delorme-Axford , Amélie Bernard , Lily Keane , Vassilis Stratoulias et al.
Cell Death and Disease, 2022, 13 (11), pp.1-13. ⟨10.1038/s41419-022-05381-9⟩
Article dans une revue hal-03957390 v1
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Phosphatidylinositol-4-phosphate joins the dance of plant autophagosome formation

Rodrigo Enrique Gomez , Julie Castets , Josselin Lupette , Clément Chambaud , Jérôme Joubès et al.
Autophagy, 2022, 19, pp.1609 - 1610. ⟨10.1080/15548627.2022.2132042⟩
Article dans une revue hal-04297803 v1
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AtEH/Pan1 proteins drive phase separation of the TPLATE complex and clathrin polymerisation during plant endocytosis

Jonathan Michael Dragwidge , Yanning Wang , Lysiane Brocard , Andreas de Meyer , Roman Hudeček et al.
Article dans une revue hal-03847415 v1
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Autophagy inhibition by targeting PIKfyve potentiates response to immune checkpoint blockade in prostate cancer

Yuanyuan Qiao , Jae Eun Choi , Jean Tien , Stephanie Simko , Thekkelnaycke Rajendiran et al.
Nature Cancer, 2021, 2 (9), pp.978-993. ⟨10.1038/s43018-021-00237-1⟩
Article dans une revue hal-03440254 v1
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How Lipids Contribute to Autophagosome Biogenesis, a Critical Process in Plant Responses to Stresses

Rodrigo Enrique Gomez , Josselin Lupette , Clément Chambaud , Julie Castets , Amélie Ducloy et al.
Cells, 2021, 10 (6), pp.1272. ⟨10.3390/cells10061272⟩
Article dans une revue hal-03883291 v1
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Guidelines for the use and interpretation of assays for monitoring autophagy (4th edition)

Daniel Klionsky , Amal Kamal Abdel-Aziz , Sara Abdelfatah , Mahmoud Abdellatif , Asghar Abdoli et al.
Autophagy, 2021, 17 (1), pp.1-382. ⟨10.1080/15548627.2020.1797280⟩
Article dans une revue (article de synthèse) inserm-03285572 v1
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Arabidopsis CER1-LIKE1 Functions in a Cuticular Very-Long-Chain Alkane-Forming Complex 1

Stéphanie Pascal , Amélie Bernard , Paul Deslous , Julien Gronnier , Ashley Fournier-Goss et al.
Plant Physiology, 2019, 179 (2), pp.415-432. ⟨10.1104/pp.18.01075⟩
Article dans une revue hal-02368049 v1

Lipids in membrane dynamics during autophagy in plants

Rodrigo Enrique Gomez , Jérôme Joubès , Nicolas Valentin , Henri Batoko , Béatrice Satiat-Jeunemaître et al.
Journal of Experimental Botany, 2018, 69 (6), pp.1287--1299. ⟨10.1093/jxb/erx392⟩
Article dans une revue hal-02177909 v1
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A novel pathway of targeted autophagy is induced by DNA damage in budding yeast

Vinay Eapen , David Waterman , Amélie Bernard , Nathan Schiffman , Enrich Sayas et al.
Proceedings of the National Academy of Sciences of the United States of America, 2017, 114 (7), pp.E1158-E1167. ⟨10.1073/pnas.1614364114⟩
Article dans une revue hal-03156537 v1
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The Arabidopsis cer26 mutant, like the cer2 mutant, is specifically affected in the very long chain fatty acid elongation process

Stéphanie Pascal , Amélie Bernard , Maud Sorel , Marjorie Pervent , Denis Vile et al.
The Plant Journal, 2013, 73 (5), pp.733-746. ⟨10.1111/tpj.12060⟩
Article dans une revue hal-02643891 v1

Arabidopsis cuticular waxes: Advances in synthesis, export and regulation

Amelie Bernard , Jérôme Joubès
Progress in Lipid Research, 2013, 52 (1), pp.110 - 129. ⟨10.1016/j.plipres.2012.10.002⟩
Article dans une revue istex hal-02651423 v1

Reconstitution of Plant Alkane Biosynthesis in Yeast Demonstrates That Arabidopsis ECERIFERUM1 and ECERIFERUM3 Are Core Components of a Very-Long-Chain Alkane Synthesis Complex

Amelie Bernard , Frederic Domergue , Stephanie Pascal , Reinhard Jetter , Charlotte Renne et al.
The Plant cell, 2012, 24 (7), pp.3106 - 3118. ⟨10.1105/tpc.112.099796⟩
Article dans une revue hal-01003414 v1
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Overexpression of Arabidopsis ECERIFERUM1 promotes wax very-long-chain alkane biosynthesis and influences plant response to biotic and abiotic stresses

Brice Bourdenx , Amelie Bernard , Frederic Domergue , Stéphanie Pascal , Amandine Leger et al.
Plant Physiology, 2011, 156 (1), pp.29-45. ⟨10.1104/pp.111.172320⟩
Article dans une revue hal-02651224 v1