Arthur Kocher

24
Documents
Affiliations actuelles
  • Centre d'anthropologie et de génomique de Toulouse (CAGT)
  • Max-Planck-Institut für evolutionäre Anthropologie = Max Planck Institute for Evolutionary Anthropology (MPI-EVA)
Identifiants chercheurs
Contact

Présentation

I study the ecology and evolutionary history of infectious agents to better understand (i) the processes that have shaped current pathogen diversity and (ii) the epidemiological consequences of ongoing global changes. My research relies on environmental genomic and paleogenetic approaches to generate complex ecological datasets and diachronic genomic information. I used these tools together with statistical and phylogenetic approaches to study topics ranging from the epidemiological impact of the current biodiversity crisis to historical and phylogeographic perspectives on infectious diseases.

Domaines de recherche

Sciences du Vivant [q-bio]

Publications

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Publications

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Ancient Plasmodium genomes shed light on the history of human malaria

Megan Michel , Eirini Skourtanioti , Federica Pierini , Evelyn Guevara , Angela Mötsch et al.
Nature, 2024, 631 (8019), pp.125-133. ⟨10.1038/s41586-024-07546-2⟩
Article dans une revue hal-04682968 v1
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Biodiversity and vector‐borne diseases: Host dilution and vector amplification occur simultaneously for Amazonian leishmaniases

Arthur Kocher , Josselin Cornuault , Jean‐charles Gantier , Sophie Manzi , Agathe Chavy et al.
Molecular Ecology, 2023, ⟨10.1111/mec.16341⟩
Article dans une revue hal-03576716 v1
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Phylogenetic analysis of the origin and spread of plague in Madagascar

Luis Roger Esquivel Gomez , Cyril Savin , Voahangy Andrianaivoarimanana , Soloandry Rahajandraibe , Lovasoa Nomena Randriantseheno et al.
PLoS Neglected Tropical Diseases, 2023, 17 (5), pp.e0010362. ⟨10.1371/journal.pntd.0010362⟩
Article dans une revue pasteur-04255025 v1
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Facilitating accessible, rapid, and appropriate processing of ancient metagenomic data with AMDirT

Maxime Borry , Adrian Forsythe , Aida Andrades Valtueña , Alexander Hübner , Anan Ibrahim et al.
F1000Research, 2023, 12, pp.926. ⟨10.12688/f1000research.134798.1⟩
Article dans une revue pasteur-04261820 v1
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The source of the Black Death in fourteenth-century central Eurasia

Maria A Spyrou , Lyazzat Musralina , Guido A Gnecchi Ruscone , Arthur Kocher , Pier-Giorgio Borbone et al.
Nature, 2022, 606, pp.718 - 724. ⟨10.1038/s41586-022-04800-3⟩
Article dans une revue hal-04917729 v1
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Ecology, evolution, and epidemiology of zoonotic and vector-borne infectious diseases in French Guiana: Transdisciplinarity does matter to tackle new emerging threats

Benoît de Thoisy , Olivier Duron , Loïc Epelboin , Lise Musset , Philippe Quénel et al.
Infection, Genetics and Evolution, 2021, 93, pp.104916. ⟨10.1016/j.meegid.2021.104916⟩
Article dans une revue pasteur-03261181 v1
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Ten millennia of hepatitis B virus evolution

Arthur Kocher , Luka Papac , Rodrigo Barquera , Felix Key , Maria Spyrou et al.
Science, 2021, 374 (6564), pp.182-188. ⟨10.1126/science.abi5658⟩
Article dans une revue hal-03820030 v1
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What can phylodynamics bring to animal health research?

Claire Guinat , Timothee Vergne , Arthur Kocher , Debapryio Chakraborty , Mathilde C. Paul et al.
Trends in Ecology & Evolution, 2021, 36 (9), pp.837-847. ⟨10.1016/j.tree.2021.04.013⟩
Article dans une revue (article de synthèse) hal-03327681 v1
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The Indirect ELISA <i>Trypanosoma evansi</i> in Equids: Optimisation and Application to a Serological Survey including Racing Horses, in Thailand

Margot Camoin , Arthur Kocher , Piangjai Chalermwong , Sarawut Yangtarra , Ketsarin Kamyingkird et al.
BioMed Research International , 2019, 2019, pp.1 - 12. ⟨10.1155/2019/2964639⟩
Article dans une revue hal-04917740 v1
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Identification of French Guiana sand flies using MALDI-TOF mass spectrometry with a new mass spectra library

Agathe Chavy , Cécile Nabet , Anne Cecile Normand , Arthur Kocher , Marine Ginouvès et al.
PLoS Neglected Tropical Diseases, 2019, 13 (2), pp.e0007031. ⟨10.1371/journal.pntd.0007031⟩
Article dans une revue hal-02083115 v1

High-throughput sequencing of kDNA amplicons for the analysis of Leishmania minicircles and identification of Neotropical species

Arthur Kocher , Sophie Valière , Anne-Laure Bañuls , Jérôme Murienne
Parasitology, 2018, 145 (5), pp.585-594. ⟨10.1017/S0031182017002013⟩
Article dans une revue hal-02404093 v1
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High-throughput sequencing of kDNA amplicons for the analysis of Leishmania minicircles and identification of Neotropical species

Arthur Kocher , Sophie Valière , Anne-Laure Bañuls , Jérôme Murienne
Parasitology, 2017, 145 (5), pp.585-594. ⟨10.1017/S0031182017002013⟩
Article dans une revue hal-04917745 v1
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Evaluation of short mitochondrial metabarcodes for the identification of Amazonian mammals

Arthur Kocher , Benoît de Thoisy , Francois Catzeflis , Maïlis Huguin , Sophie Valière et al.
Methods in Ecology and Evolution, 2017, 8 (10), pp.1276 - 1283. ⟨10.1111/2041-210X.12729⟩
Article dans une revue hal-01836328 v1
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iDNA screening: Disease vectors as vertebrate samplers

Arthur Kocher , Benoit de Thoisy , François Catzeflis , Sophie Valière , Anne-Laure Bañuls et al.
Molecular Ecology, 2017, 26 (22), pp.6478-6486. ⟨10.1111/mec.14362⟩
Article dans une revue hal-04917760 v1

Complete mitochondrial genome ofLutzomyia (Nyssomyia) umbratilis (Diptera: Psychodidae), the main vector of Leishmania guyanensis

Arthur Kocher , Jean-Charles Gantier , Hélène Holota , Céline Jeziorski , Eric Coissac et al.
Mitochondrial DNA Part A, 2016, 27 (6), pp.4219-4221. ⟨10.3109/19401736.2015.1022748⟩
Article dans une revue hal-01602798 v1
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Vector soup: high‐throughput identification of Neotropical phlebotomine sand flies using metabarcoding

Arthur Kocher , Jean‐charles Gantier , Pascal Gaborit , Lucie Zinger , Helene Holota et al.
Molecular Ecology Resources, 2016, 17 (2), pp.172-182. ⟨10.1111/1755-0998.12556⟩
Article dans une revue hal-04917754 v1

Is the Oriental House Rat ( Rattus tanezumi ) a Potential Reservoir for Trypanosoma evansi in Thailand?

Arthur Kocher , Marc Desquesnes , Sarawut Yangtara , Serge Morand , Sathaporn Jittapalapong
Journal of wildlife diseases, 2015, 51 (3), pp.719-723. ⟨10.7589/2014-06-155⟩
Article dans une revue hal-03039037 v1
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Sequencing of the mitochondrial genome of the avocado lace bug <em>Pseudacysta perseae</em> (Heteroptera, Tingidae) using a genome skimming approach

Arthur Kocher , Eric Guilbert , Emeline Lhuillier , Jérôme Murienne
Comptes Rendus. Biologies, 2015, 338 (3), pp.149-160. ⟨10.1016/j.crvi.2014.12.004⟩
Article dans une revue hal-02636710 v1
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Evaluation of an Indirect-ELISA Test for<i>Trypanosoma evansi</i>Infection (Surra) in Buffaloes and Its Application to a Serological Survey in Thailand

Arthur Kocher , Marc Desquesnes , Ketsarin Kamyingkird , Sarawut Yangtara , Emilye Leboucher et al.
BioMed Research International , 2015, 2015, pp.1 - 8. ⟨10.1155/2015/361037⟩
Article dans une revue hal-04917770 v1

Shotgun assembly of the assassin bug <em>Brontostoma colossus</em> mitochondrial genome (Heteroptera, Reduviidae)

Arthur Kocher , Maria Kamilari , Emeline Lhuillier , Eric Coissac , Julie Péneau et al.
Gene, 2014, 552 (1), pp.184-194. ⟨10.1016/j.gene.2014.09.033⟩
Article dans une revue hal-02638880 v1
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Shotgun assembly of the assassin bug Brontostoma colossus mitochondrial genome (Heteroptera, Reduviidae)

Arthur Kocher , Maria Kamilari , Emeline Lhuillier , Eric Coissac , Julie Péneau et al.
Gene, 2014, 552 (1), pp.184-194. ⟨10.1016/j.gene.2014.09.033⟩
Article dans une revue hal-04917775 v1

Impact de l’activité humaine sur le risque de transmission de la Leishmaniose dans l’aire de St-Georges de l’Oyapock

Arthur Kocher , Jérôme Murienne
Séminaire annuel de restitution de l’Observatoire Hommes -Milieux Oyapock, Dec 2016, Cayenne, France
Communication dans un congrès hal-04632671 v1