Aurélien Carlier

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Affiliation actuelle
  • Laboratoire des Interactions Plantes Microbes Environnement (LIPME)
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Publications

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Structures and roles of BcsD and partner scaffold proteins in proteobacterial cellulose secretion

Thibault Sana , Areti Notopoulou , Lucie Puygrenier , Marion Decossas , Sandra Moreau et al.
Current Biology, 2024, 34 (1), 6 p. ⟨10.1016/j.cub.2023.11.057⟩
Article dans une revue hal-04474396 v1
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Pseudomonas fortuita sp. nov., isolated from the endosphere of a wild yam

Aurelien Carlier , Marine Beaumel , Sandra Moreau , Tessa Acar , Thibault Géry Sana et al.
International Journal of Systematic and Evolutionary Microbiology, 2024, 74 (6), ⟨10.1099/ijsem.0.006395⟩
Article dans une revue hal-04659457 v1
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The association between Dioscorea sansibarensis and Orrella dioscoreae as a model for hereditary leaf symbiosis

Tessa Acar , Sandra Moreau , Marie-Françoise Jardinaud , Gabriella Houdinet , Felicia Maviane-Macia et al.
PLoS ONE, 2024, 19 (4), pp.e0302377. ⟨10.1371/journal.pone.0302377⟩
Article dans une revue hal-04670561 v1
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Cyclitol metabolism is a central feature of Burkholderia leaf symbionts

Bram Danneels , Monique Blignaut , Guillaume Marti , Simon Sieber , Peter Vandamme et al.
Environmental Microbiology, 2023, 25 (2), pp.454-472. ⟨10.1111/1462-2920.16292⟩
Article dans une revue hal-04043115 v1

Govania unica gen. nov., sp. nov., a rare biosphere bacterium that represents a novel family in the class Alphaproteobacteria

Peter Vandamme , Charlotte Peeters , Amanda Hettiarachchi , Margo Cnockaert , Aurélien Carlier
Systematic and Applied Microbiology, 2023, 46 (3), pp.126405. ⟨10.1016/j.syapm.2023.126405⟩
Article dans une revue hal-04095845 v1
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Ecotin: A versatile protease inhibitor of bacteria and eukaryotes

Frédéric de Meyer , Aurélien Carlier
Frontiers in Microbiology, 2023, 14, 8 p. ⟨10.3389/fmicb.2023.1114690⟩
Article dans une revue hal-04012775 v1
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Motility-Independent Vertical Transmission of Bacteria in Leaf Symbiosis

Tessa Acar , Sandra Moreau , Olivier Coen , Frédéric de Meyer , Olivier Leroux et al.
mBio, 2022, 15 p. ⟨10.1128/mbio.01033-22⟩
Article dans une revue hal-03778794 v1
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Rhizobium leguminosarum symbiovar viciae strains are natural wheat endophytes that can stimulate root development

Claudia Bartoli , Stéphane Boivin , Marta Marchetti , Carine Gris , Virginie Gasciolli et al.
Environmental Microbiology, 2022, 24 (11), pp.5509-5523. ⟨10.1111/1462-2920.16148⟩
Article dans une revue hal-04204399 v2

Paenibacillus foliorum sp. nov., Paenibacillus phytohabitans sp. nov., Paenibacillus plantarum sp. nov., Paenibacillus planticolens sp. nov., Paenibacillus phytorum sp. nov. and Paenibacillus germinis sp. nov., isolated from the Arabidopsis thaliana phyllosphere

Shan Shan Qi , Margo Cnockaert , Aurélien Carlier , Peter Vandamme
International Journal of Systematic and Evolutionary Microbiology, 2021, 71 (4), 15 p. ⟨10.1099/ijsem.0.004781⟩
Article dans une revue hal-03592289 v1

Pedobacter gandavensis sp. nov., Pedobacter foliorum sp. nov. and Pedobacter planticolens sp. nov., isolated from leaves of Arabidopsis thaliana

Shan Shan Qi , Shan Shan Qi , Margo Cnockaert , Aurélien Carlier , Peter Vandamme
International Journal of Systematic and Evolutionary Microbiology, 2021, 71 (3), 8p. ⟨10.1099/ijsem.0.004667⟩
Article dans une revue hal-03255451 v1
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Patterns of transmission and horizontal gene transfer in the Dioscorea sansibarensis leaf symbiosis revealed by whole-genome sequencing

Bram Danneels , Juan Viruel , Krista Mcgrath , Steven Janssens , Nathan Wales et al.
Current Biology, 2021, 31 (12), pp.2666-2673.e4. ⟨10.1016/j.cub.2021.03.049⟩
Article dans une revue hal-03272495 v1
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Induction of antibiotic specialized metabolism by co‐culturing in a collection of phyllosphere bacteria

Shan Shan Qi , Alexander Bogdanov , Margo Cnockaert , Tessa Acar , Sarah Ranty‐roby et al.
Environmental Microbiology, 2021, 23 (4), pp.2132-2151. ⟨10.1111/1462‐2920.15382⟩
Article dans une revue hal-03097074 v1
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Orrella amnicola sp. nov., isolated from a freshwater river, reclassification of Algicoccus marinus as Orrella marina comb. nov., and emended description of the genus Orrella

Shih-Yi Sheu , Li-Chu Chen , Che-Chia Yang , Aurélien Carlier , Wen-Ming Chen
International Journal of Systematic and Evolutionary Microbiology, 2020, 70 (12), pp.6381-6389. ⟨10.1099/ijsem.0.004538⟩
Article dans une revue hal-03151291 v1
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PaSiT: a novel approach based on short-oligonucleotide frequencies for efficient bacterial identification and typing

Gleb Goussarov , Ilse Cleenwerck , Mohamed Mysara , Natalie Leys , Pieter Monsieurs et al.
Bioinformatics, 2020, 36 (8), pp.2337-2344. ⟨10.1093/bioinformatics/btz964⟩
Article dans une revue hal-02961993 v1

Adaptations and evolution of a heritable leaf nodule symbiosis between Dioscorea sansibarensis and Orrella dioscoreae

Frédéric de Meyer , Bram Danneels , Tessa Acar , Rado Rasolomampianina , Mamy Tiana Rajaonah et al.
The International Society of Microbiologial Ecology Journal, 2019, 13 (7), pp.1831-1844. ⟨10.1038/s41396-019-0398-8⟩
Article dans une revue hal-02961999 v1

Synthesis and Biological Evaluation of the Novel Growth Inhibitor Streptol Glucoside, Isolated from an Obligate Plant Symbiont

Chien-Chi Hsiao , Simon Sieber , Antri Georgiou , Aurélien Bailly , Despina Emmanouilidou et al.
Chemistry - A European Journal, 2019, 25 (7), pp.1722-1726. ⟨10.1002/chem.201805693⟩
Article dans une revue hal-02962208 v1
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Introducing SPeDE: High-Throughput Dereplication and Accurate Determination of Microbial Diversity from Matrix-Assisted Laser Desorption–Ionization Time of Flight Mass Spectrometry Data

Charles Dumolin , Maarten Aerts , Bart Verheyde , Simon Schellaert , Tim Vandamme et al.
mSystems, 2019, 4 (5), pp.e00437-19. ⟨10.1128/mSystems.00437-19⟩
Article dans une revue hal-02961994 v1

Abditibacterium utsteinense sp. nov., the first cultivated member of candidate phylum FBP, isolated from ice-free Antarctic soil samples

Guillaume Tahon , Bjorn Tytgat , Liesbeth Lebbe , Aurélien Carlier , Anne Willems
Systematic and Applied Microbiology, 2018, 41 (4), pp.279-290. ⟨10.1016/j.syapm.2018.01.009⟩
Article dans une revue hal-02962216 v1

Leaf nodule symbiosis: function and transmission of obligate bacterial endophytes

Marta Pinto-Carbó , Karl Gademann , Leo Eberl , Aurélien Carlier
Current Opinion in Plant Biology, 2018, 44, pp.23-31. ⟨10.1016/j.pbi.2018.01.001⟩
Article dans une revue (article de synthèse) hal-02962213 v1

Heterologous expression, biosynthetic studies, and ecological function of the selective Gq-signaling inhibitor FR900359

Max Crüsemann , Raphael Reher , Isabella Schamari , Alexander O. Brachmann , Tsubasa Ohbayashi et al.
Angewandte Chemie International Edition, 2018, 57 (3), pp.836-840. ⟨10.1002/anie.201707996⟩
Article dans une revue hal-02176996 v1
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Patterns of Nucleotide Deletion and Insertion Inferred from Bacterial Pseudogenes

Bram Danneels , Marta Pinto-Carbó , Aurélien Carlier
Genome Biology and Evolution, 2018, 10 (7), pp.1792-1802. ⟨10.1093/gbe/evy140⟩
Article dans une revue hal-02962215 v1

Heterologe Expression, Biosynthese und ökologische Funktion des selektiven Gq‐Signaltransduktionsinhibitors FR900359

Max Crüsemann , Raphael Reher , Isabella Schamari , Alexander Brachmann , Tsubasa Ohbayashi et al.
Angewandte Chemie, 2018, 130 (3), pp.844-849. ⟨10.1002/ange.201707996⟩
Article dans une revue hal-02962250 v1
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The equivalence of two classical list scheduling algorithms for dependent typed tasks with release dates, due dates and precedence delays

Aurélien Carlier , Claire C. Hanen , Alix Munier-Kordon
Journal of Scheduling, 2017, pp.1-9. ⟨10.1007/s10951-016-0507-8⟩
Article dans une revue hal-01472060 v1

The Essential Genome of Burkholderia cenocepacia H111

Steven Higgins , Maria Sanchez-Contreras , Stefano Gualdi , Marta Pinto-Carbó , Aurélien Carlier et al.
Journal of Bacteriology, 2017, 199 (22), ⟨10.1128/JB.00260-17⟩
Article dans une revue hal-02962261 v1

Draft genome and description of Orrella dioscoreae gen. nov. sp. nov., a new species of Alcaligenaceae isolated from leaf acumens of Dioscorea sansibarensis

Aurélien Carlier , Margo Cnockaert , Linda Fehr , Peter Vandamme , Leo Eberl
Systematic and Applied Microbiology, 2017, 40 (1), pp.11-21. ⟨10.1016/j.syapm.2016.10.002⟩
Article dans une revue hal-02962291 v1
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Comparative genomics of Burkholderia multivorans, a ubiquitous pathogen with a highly conserved genomic structure

Charlotte Peeters , Vaughn Cooper , Philip Hatcher , Bart Verheyde , Aurélien Carlier et al.
PLoS ONE, 2017, 12 (4), pp.e0176191. ⟨10.1371/journal.pone.0176191⟩
Article dans une revue hal-02962266 v1

Comparative Genomics of Burkholderia singularis sp. nov., a Low G+C Content, Free-Living Bacterium That Defies Taxonomic Dissection of the Genus Burkholderia

Peter Vandamme , Charlotte Peeters , Birgit de Smet , Erin Price , Derek Sarovich et al.
Frontiers in Microbiology, 2017, 8, ⟨10.3389/fmicb.2017.01679⟩
Article dans une revue hal-02962256 v1
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Characterization of the emerging zoonotic pathogen Arcobacter thereius by whole genome sequencing and comparative genomics

Francesca Rovetto , Aurélien Carlier , Anne-Marie van den Abeele , Koen Illeghems , Filip van Nieuwerburgh et al.
PLoS ONE, 2017, 12 (7), pp.e0180493. ⟨10.1371/journal.pone.0180493⟩
Article dans une revue hal-02962265 v1

The genome analysis of C andidatus Burkholderia crenata reveals that secondary metabolism may be a key function of the A rdisia crenata leaf nodule symbiosis

Aurélien Carlier , Linda Fehr , Marta Pinto-Carbó , Till Schäberle , Raphael Reher et al.
Environmental Microbiology, 2016, 18 (8), pp.2507-2522. ⟨10.1111/1462-2920.13184⟩
Article dans une revue istex hal-02962301 v1

Molecular mechanisms underlying the close association between soil Burkholderia and fungi

Nejc Stopnisek , Daniela Zühlke , Aurélien Carlier , Albert Barberán , Noah Fierer et al.
The International Society of Microbiologial Ecology Journal, 2016, 10 (1), pp.253-264. ⟨10.1038/ismej.2015.73⟩
Article dans une revue hal-02962318 v1

The role of siderophores in metal homeostasis of members of the genus Burkholderia

Anugraha Mathew , Christian Jenul , Aurélien Carlier , Leo Eberl
Environmental Microbiology Reports, 2016, 8 (1), pp.103-109. ⟨10.1111/1758-2229.12357⟩
Article dans une revue istex hal-02962305 v1

Evidence of horizontal gene transfer between obligate leaf nodule symbionts

Marta Pinto-Carbó , Simon Sieber , Steven Dessein , Thomas Wicker , Brecht Verstraete et al.
The International Society of Microbiologial Ecology Journal, 2016, 10 (9), pp.2092-2105. ⟨10.1038/ismej.2016.27⟩
Article dans une revue hal-02962299 v1

Isolation and Total Synthesis of Kirkamide, an Aminocyclitol from an Obligate Leaf Nodule Symbiont

Simon Sieber , Aurélien Carlier , Markus Neuburger , Giselher Grabenweger , Leo Eberl et al.
Angewandte Chemie International Edition, 2015, 54 (27), pp.7968-7970. ⟨10.1002/anie.201502696⟩
Article dans une revue hal-02962312 v1
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Mathematical Model for the Study of Relocation Strategies in One-way Carsharing Systems

Aurélien Carlier , Alix Munier-Kordon , Witold Klaudel
Transportation Research Procedia, 2015, 10, pp.374-383. ⟨10.1016/j.trpro.2015.09.087⟩
Article dans une revue hal-01294551 v1

The Third Replicon of Members of the Burkholderia cepacia Complex, Plasmid pC3, Plays a Role in Stress Tolerance

Kirsty Agnoli , Carmen Frauenknecht , Roman Freitag , Stephan Schwager , Christian Jenul et al.
Applied and Environmental Microbiology, 2014, 80 (4), pp.1340-1348. ⟨10.1128/AEM.03330-13⟩
Article dans une revue hal-02381128 v1
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Genome Sequence of Burkholderia cenocepacia H111, a Cystic Fibrosis Airway Isolate

Aurélien Carlier , Kirsty Agnoli , Gabriella Pessi , Angela Suppiger , Christian Jenul et al.
Genome Announcements, 2014, 2 (2), pp.00298-14. ⟨10.1128/genomeA.00298-14⟩
Article dans une revue hal-02962320 v1

N-hexanoyl-l-homoserine lactone,a mediator of bacterial quorum-sensing regulation,exhibits plant-dependent stability and may be inactivated by germinating Lotus corniculatus seedlings.

Laurie Delalande , Denis Faure , Aurélie Raffoux , Stéphane Uroz , Cathy d'Angelo-Picard et al.
FEMS Microbiology Ecology, 2005, 52, pp.13-20. ⟨10.1016/j.femsec.2004.10.005⟩
Article dans une revue hal-00019093 v1

Bacterial populations in the rhizosphere of tobacco plants producing the quorum-sensing signals hexanoyl-homoserine lactone and 3-oxo-hexanoyl-homoserine lactone.

Cathy d'Angelo-Picard , Denis Faure , Aurélien Carlier , Stéphane Uroz , Aurélie Raffoux et al.
FEMS Microbiology Ecology, 2004, 51 (1), pp.19-29. ⟨10.1016/j.femsec.2004.07.008⟩
Article dans une revue istex hal-00122912 v1

The assimilation of gamma-butyrolactone in Agrobacterium tumefaciens C58 interferes with the accumulation of the N-acyl-homoserine lactone signal.

Aurélien Carlier , Romain Chevrot , Yves Dessaux , Denis Faure
Molecular Plant-Microbe Interactions, 2004, 17 (9), pp.951-7
Article dans une revue hal-00122349 v1

Novel bacteria degrading N-acylhomoserine lactones and their use as quenchers of quorum-sensing-regulated functions of plant-pathogenic bacteria.

Stéphane Uroz , Cathy d'Angelo-Picard , Aurélien Carlier , Miena Elasri , Carine Sicot et al.
Microbiology, 2003, 149 (8), pp.1981-1989. ⟨10.1099/mic.0.26375-0⟩
Article dans une revue hal-00135468 v1
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Whole-Genome Sequencing of Bacterial Endophytes From Fresh and Preserved Plant Specimens

Bram Danneels , Aurélien Carlier
Microbial Environmental Genomics (MEG), 2605, Springer US, pp.133-155, 2023, Methods in Molecular Biology, ⟨10.1007/978-1-0716-2871-3_7⟩
Chapitre d'ouvrage hal-04683453 v1

Orrella

Aurélien Carlier
Bergey's Manual of Systematics of Archaea and Bacteria, John Wiley and Sons Inc, 2019, 9781118960608. ⟨10.1002/9781118960608.gbm01819⟩
Chapitre d'ouvrage hal-02790875 v1

Microbial Biofilms and Quorum Sensing

Aurélien Carlier , Gabriella Pessi , Leo Eberl
Ben Lugtenberg. Principles of Plant-Microbe Interactions, Springer International Publishing, pp.45-52, 2015, 978-3-319-08574-6. ⟨10.1007/978-3-319-08575-3_7⟩
Chapitre d'ouvrage hal-02962307 v1

The endophyte Candidatus Burkholderia crenata of the TCM plant Ardisia crenata produces the selective Gq-inhibitor FR900359

R Reher , I Schamari , S Kehraus , S Annala , M Kuschak et al.
9th Joint Meeting of AFERP, ASP, GA, JSP, PSE & SIF, Jul 2016, Copenhagen, Denmark. pp.S1-S381, ⟨10.1055/s-0036-1596736⟩
Communication dans un congrès hal-02962290 v1
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Optimisation d'un système d'autopartage avec contraintes de relocalisation de véhicules

Aurélien Carlier , Alix Munier-Kordon , Witold Klaudel
16ème conférence ROADEF (ROADEF 2015), Feb 2015, Marseille, France
Communication dans un congrès hal-01784811 v1
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Optimization of a one-way carsharing system with relocation operations

Aurélien Carlier , Alix Munier-Kordon , Witold Klaudel
10th International Conference on Modeling, Optimization and SIMulation MOSIM 2014, Nov 2014, Nancy, France
Communication dans un congrès hal-01294548 v1
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Optimal design of a one-way carsharing system including electric vehicles

Aurélien Carlier
Operations Research [math.OC]. Université Pierre et Marie Curie - Paris VI, 2016. English. ⟨NNT : 2016PA066134⟩
Thèse tel-01397234 v1