Aurélien Carlier

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Laboratoire des Interactions Plantes Microbes Environnement (LIPME)

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Publications

A loss-of-function allele fixed during domestication reshapes nectar chemistry, microbial diversity, and pollinator visits

Guillaume Tueux , Nicolas Pouilly , Jordan Bernigaud Samatan , Nicolas Blanchet , Marie-Claude Boniface et al.

Current Biology, 2026, 36 (18), pp.4765-4775.e11. ⟨10.1016/j.cub.2026.08.022⟩

Article dans une revue hal-05760239v1

Paenidepsins are a Family of Lipopeptides from <i>Paenibacillus</i>

Daniel Torres-Püschel , Lukas Zimmer , Stefan Kehraus , Aia Ali Abdelrahman , Tanja Schneider et al.

Journal of Natural Products, 2026, ⟨10.1021/acs.jnatprod.5c01579⟩

Article dans une revue hal-05557273v1

Corrigendum to “Govania unica gen. nov., sp. nov., a rare biosphere bacterium that represents a novel family in the class Alphaproteobacteria” [Syst. Appl. Microbiol. 46(3) (2023) 126405]

Peter Vandamme , Charlotte Peeters , Amanda Hettiarachchi , Margo Cnockaert , Aurélien Carlier

Systematic and Applied Microbiology, 2025, 48 (5), pp.126642. ⟨10.1016/j.syapm.2025.126642⟩

Article dans une revue hal-05284223v1

Artificial symbiont replacement in a vertically transmitted plant symbiosis reveals a role for microbe–microbe interactions in enforcing specificity

Léa Ninzatti , Thibault G Sana , Tessa Acar , Sandra Moreau , Marie-Françoise Jardinaud et al.

The International Society of Microbiologial Ecology Journal, 2025, 19 (1), pp.wraf177. ⟨10.1093/ismejo/wraf177⟩

Article dans une revue hal-05514678v1

Hereditary Leaf Symbiosis in Tropical Plants: Evolution and Function of Vertically Transmitted Bacterial Symbionts

Léa Ninzatti , Marie-Françoise Jardinaud , Aurélien Carlier

Phytobiomes Journal, 2025, 9 (3), pp.343 - 353. ⟨10.1094/pbiomes-11-24-0111-rvw⟩

Article dans une revue hal-05514735v1

Structures and roles of BcsD and partner scaffold proteins in proteobacterial cellulose secretion

Thibault Sana , Areti Notopoulou , Lucie Puygrenier , Marion Decossas , Sandra Moreau et al.

Current Biology, 2024, 34 (1), 6 p. ⟨10.1016/j.cub.2023.11.057⟩

Article dans une revue hal-04474396v1

Pseudomonas fortuita sp. nov., isolated from the endosphere of a wild yam

Aurelien Carlier , Marine Beaumel , Sandra Moreau , Tessa Acar , Thibault Géry Sana et al.

International Journal of Systematic and Evolutionary Microbiology, 2024, 74 (6), ⟨10.1099/ijsem.0.006395⟩

Article dans une revue hal-04659457v1

The association between Dioscorea sansibarensis and Orrella dioscoreae as a model for hereditary leaf symbiosis

Tessa Acar , Sandra Moreau , Marie-Françoise Jardinaud , Gabriella Houdinet , Felicia Maviane-Macia et al.

PLoS ONE, 2024, 19 (4), pp.e0302377. ⟨10.1371/journal.pone.0302377⟩

Article dans une revue hal-04670561v1

Cyclitol metabolism is a central feature of Burkholderia leaf symbionts

Bram Danneels , Monique Blignaut , Guillaume Marti , Simon Sieber , Peter Vandamme et al.

Environmental Microbiology, 2023, 25 (2), pp.454-472. ⟨10.1111/1462-2920.16292⟩

Article dans une revue hal-04043115v1

Ecotin: A versatile protease inhibitor of bacteria and eukaryotes

Frédéric de Meyer , Aurélien Carlier

Frontiers in Microbiology, 2023, 14, 8 p. ⟨10.3389/fmicb.2023.1114690⟩

Article dans une revue hal-04012775v1

Govania unica gen. nov., sp. nov., a rare biosphere bacterium that represents a novel family in the class Alphaproteobacteria

Peter Vandamme , Charlotte Peeters , Amanda Hettiarachchi , Margo Cnockaert , Aurélien Carlier

Systematic and Applied Microbiology, 2023, 46 (3), pp.126405. ⟨10.1016/j.syapm.2023.126405⟩

Article dans une revue hal-04095845v1

Motility-Independent Vertical Transmission of Bacteria in Leaf Symbiosis

Tessa Acar , Sandra Moreau , Olivier Coen , Frédéric de Meyer , Olivier Leroux et al.

mBio, 2022, 15 p. ⟨10.1128/mbio.01033-22⟩

Article dans une revue hal-03778794v1

Rhizobium leguminosarum symbiovar viciae strains are natural wheat endophytes that can stimulate root development

Claudia Bartoli , Stéphane Boivin , Marta Marchetti , Carine Gris , Virginie Gasciolli et al.

Environmental Microbiology, 2022, 24 (11), pp.5509-5523. ⟨10.1111/1462-2920.16148⟩

Article dans une revue hal-04204399v2

Paenibacillus foliorum sp. nov., Paenibacillus phytohabitans sp. nov., Paenibacillus plantarum sp. nov., Paenibacillus planticolens sp. nov., Paenibacillus phytorum sp. nov. and Paenibacillus germinis sp. nov., isolated from the Arabidopsis thaliana phyllosphere

Shan Shan Qi , Margo Cnockaert , Aurélien Carlier , Peter Vandamme

International Journal of Systematic and Evolutionary Microbiology, 2021, 71 (4), 15 p. ⟨10.1099/ijsem.0.004781⟩

Article dans une revue hal-03592289v1

Erratum: Orrella amnicola sp. nov., isolated from a freshwater river, reclassification of Algicoccus marinus as Orrella marina comb. nov., and emended description of the genus Orrella

Shih-Yi Sheu , Li-Chu Chen , Che-Chia Yang , Aurélien Carlier , Wen-Ming Chen

International Journal of Systematic and Evolutionary Microbiology, 2021, 71, pp.004749. ⟨10.1099/ijsem.0.004749⟩

Article dans une revue hal-05153687v1

Pedobacter gandavensis sp. nov., Pedobacter foliorum sp. nov. and Pedobacter planticolens sp. nov., isolated from leaves of Arabidopsis thaliana

Shan Shan Qi , Shan Shan Qi , Margo Cnockaert , Aurélien Carlier , Peter Vandamme

International Journal of Systematic and Evolutionary Microbiology, 2021, 71 (3), 8p. ⟨10.1099/ijsem.0.004667⟩

Article dans une revue hal-03255451v1

Induction of antibiotic specialized metabolism by co‐culturing in a collection of phyllosphere bacteria

Shan Shan Qi , Alexander Bogdanov , Margo Cnockaert , Tessa Acar , Sarah Ranty‐roby et al.

Environmental Microbiology, 2021, 23 (4), pp.2132-2151. ⟨10.1111/1462‐2920.15382⟩

Article dans une revue hal-03097074v1

Patterns of transmission and horizontal gene transfer in the Dioscorea sansibarensis leaf symbiosis revealed by whole-genome sequencing

Bram Danneels , Juan Viruel , Krista Mcgrath , Steven Janssens , Nathan Wales et al.

Current Biology, 2021, 31 (12), pp.2666-2673.e4. ⟨10.1016/j.cub.2021.03.049⟩

Article dans une revue hal-03272495v1

Orrella amnicola sp. nov., isolated from a freshwater river, reclassification of Algicoccus marinus as Orrella marina comb. nov., and emended description of the genus Orrella

Shih-Yi Sheu , Li-Chu Chen , Che-Chia Yang , Aurélien Carlier , Wen-Ming Chen

International Journal of Systematic and Evolutionary Microbiology, 2020, 70 (12), pp.6381-6389. ⟨10.1099/ijsem.0.004538⟩

Article dans une revue hal-03151291v1

PaSiT: a novel approach based on short-oligonucleotide frequencies for efficient bacterial identification and typing

Gleb Goussarov , Ilse Cleenwerck , Mohamed Mysara , Natalie Leys , Pieter Monsieurs et al.

Bioinformatics, 2020, 36 (8), pp.2337-2344. ⟨10.1093/bioinformatics/btz964⟩

Article dans une revue hal-02961993v1

Introducing SPeDE: High-Throughput Dereplication and Accurate Determination of Microbial Diversity from Matrix-Assisted Laser Desorption–Ionization Time of Flight Mass Spectrometry Data

Charles Dumolin , Maarten Aerts , Bart Verheyde , Simon Schellaert , Tim Vandamme et al.

mSystems, 2019, 4 (5), pp.e00437-19. ⟨10.1128/mSystems.00437-19⟩

Article dans une revue hal-02961994v1

Adaptations and evolution of a heritable leaf nodule symbiosis between Dioscorea sansibarensis and Orrella dioscoreae

Frédéric de Meyer , Bram Danneels , Tessa Acar , Rado Rasolomampianina , Mamy Tiana Rajaonah et al.

The International Society of Microbiologial Ecology Journal, 2019, 13 (7), pp.1831-1844. ⟨10.1038/s41396-019-0398-8⟩

Article dans une revue hal-02961999v1

Synthesis and Biological Evaluation of the Novel Growth Inhibitor Streptol Glucoside, Isolated from an Obligate Plant Symbiont

Chien-Chi Hsiao , Simon Sieber , Antri Georgiou , Aurélien Bailly , Despina Emmanouilidou et al.

Chemistry - A European Journal, 2019, 25 (7), pp.1722-1726. ⟨10.1002/chem.201805693⟩

Article dans une revue hal-02962208v1

Heterologous expression, biosynthetic studies, and ecological function of the selective Gq-signaling inhibitor FR900359

Max Crüsemann , Raphael Reher , Isabella Schamari , Alexander O. Brachmann , Tsubasa Ohbayashi et al.

Angewandte Chemie International Edition, 2018, 57 (3), pp.836-840. ⟨10.1002/anie.201707996⟩

Article dans une revue hal-02176996v1

Patterns of Nucleotide Deletion and Insertion Inferred from Bacterial Pseudogenes

Bram Danneels , Marta Pinto-Carbó , Aurélien Carlier

Genome Biology and Evolution, 2018, 10 (7), pp.1792-1802. ⟨10.1093/gbe/evy140⟩

Article dans une revue hal-02962215v1

Heterologe Expression, Biosynthese und ökologische Funktion des selektiven Gq‐Signaltransduktionsinhibitors FR900359

Max Crüsemann , Raphael Reher , Isabella Schamari , Alexander Brachmann , Tsubasa Ohbayashi et al.

Angewandte Chemie, 2018, 130 (3), pp.844-849. ⟨10.1002/ange.201707996⟩

Article dans une revue hal-02962250v1

Abditibacterium utsteinense sp. nov., the first cultivated member of candidate phylum FBP, isolated from ice-free Antarctic soil samples

Guillaume Tahon , Bjorn Tytgat , Liesbeth Lebbe , Aurélien Carlier , Anne Willems

Systematic and Applied Microbiology, 2018, 41 (4), pp.279-290. ⟨10.1016/j.syapm.2018.01.009⟩

Article dans une revue istex hal-02962216v1

Leaf nodule symbiosis: function and transmission of obligate bacterial endophytes

Marta Pinto-Carbó , Karl Gademann , Leo Eberl , Aurélien Carlier

Current Opinion in Plant Biology, 2018, 44, pp.23-31. ⟨10.1016/j.pbi.2018.01.001⟩

Article dans une revue (article de synthèse) istex hal-02962213v1

Comparative Genomics of Burkholderia singularis sp. nov., a Low G+C Content, Free-Living Bacterium That Defies Taxonomic Dissection of the Genus Burkholderia

Peter Vandamme , Charlotte Peeters , Birgit de Smet , Erin Price , Derek Sarovich et al.

Frontiers in Microbiology, 2017, 8, ⟨10.3389/fmicb.2017.01679⟩

Article dans une revue hal-02962256v1

Comparative genomics of Burkholderia multivorans, a ubiquitous pathogen with a highly conserved genomic structure

Charlotte Peeters , Vaughn Cooper , Philip Hatcher , Bart Verheyde , Aurélien Carlier et al.

PLoS ONE, 2017, 12 (4), pp.e0176191. ⟨10.1371/journal.pone.0176191⟩

Article dans une revue hal-02962266v1

Draft genome and description of Orrella dioscoreae gen. nov. sp. nov., a new species of Alcaligenaceae isolated from leaf acumens of Dioscorea sansibarensis

Aurélien Carlier , Margo Cnockaert , Linda Fehr , Peter Vandamme , Leo Eberl

Systematic and Applied Microbiology, 2017, 40 (1), pp.11-21. ⟨10.1016/j.syapm.2016.10.002⟩

Article dans une revue istex hal-02962291v1

The Essential Genome of Burkholderia cenocepacia H111

Steven Higgins , Maria Sanchez-Contreras , Stefano Gualdi , Marta Pinto-Carbó , Aurélien Carlier et al.

Journal of Bacteriology, 2017, 199 (22), ⟨10.1128/JB.00260-17⟩

Article dans une revue hal-02962261v1

Characterization of the emerging zoonotic pathogen Arcobacter thereius by whole genome sequencing and comparative genomics

Francesca Rovetto , Aurélien Carlier , Anne-Marie van den Abeele , Koen Illeghems , Filip van Nieuwerburgh et al.

PLoS ONE, 2017, 12 (7), pp.e0180493. ⟨10.1371/journal.pone.0180493⟩

Article dans une revue hal-02962265v1

The equivalence of two classical list scheduling algorithms for dependent typed tasks with release dates, due dates and precedence delays

Aurélien Carlier , Claire C. Hanen , Alix Munier-Kordon

Journal of Scheduling, 2017, pp.1-9. ⟨10.1007/s10951-016-0507-8⟩

Article dans une revue hal-01472060v1

The role of siderophores in metal homeostasis of members of the genus Burkholderia

Anugraha Mathew , Christian Jenul , Aurélien Carlier , Leo Eberl

Environmental Microbiology Reports, 2016, 8 (1), pp.103-109. ⟨10.1111/1758-2229.12357⟩

Article dans une revue istex hal-02962305v1

Molecular mechanisms underlying the close association between soil Burkholderia and fungi

Nejc Stopnisek , Daniela Zühlke , Aurélien Carlier , Albert Barberán , Noah Fierer et al.

The International Society of Microbiologial Ecology Journal, 2016, 10 (1), pp.253-264. ⟨10.1038/ismej.2015.73⟩

Article dans une revue hal-02962318v1

Evidence of horizontal gene transfer between obligate leaf nodule symbionts

Marta Pinto-Carbó , Simon Sieber , Steven Dessein , Thomas Wicker , Brecht Verstraete et al.

The International Society of Microbiologial Ecology Journal, 2016, 10 (9), pp.2092-2105. ⟨10.1038/ismej.2016.27⟩

Article dans une revue hal-02962299v1

The genome analysis of C andidatus Burkholderia crenata reveals that secondary metabolism may be a key function of the A rdisia crenata leaf nodule symbiosis

Aurélien Carlier , Linda Fehr , Marta Pinto-Carbó , Till Schäberle , Raphael Reher et al.

Environmental Microbiology, 2016, 18 (8), pp.2507-2522. ⟨10.1111/1462-2920.13184⟩

Article dans une revue istex hal-02962301v1

Mathematical Model for the Study of Relocation Strategies in One-way Carsharing Systems

Aurélien Carlier , Alix Munier-Kordon , Witold Klaudel

Transportation Research Procedia, 2015, 10, pp.374-383. ⟨10.1016/j.trpro.2015.09.087⟩

Article dans une revue hal-01294551v1

Isolation and Total Synthesis of Kirkamide, an Aminocyclitol from an Obligate Leaf Nodule Symbiont

Simon Sieber , Aurélien Carlier , Markus Neuburger , Giselher Grabenweger , Leo Eberl et al.

Angewandte Chemie International Edition, 2015, 54 (27), pp.7968-7970. ⟨10.1002/anie.201502696⟩

Article dans une revue hal-02962312v1

The Third Replicon of Members of the Burkholderia cepacia Complex, Plasmid pC3, Plays a Role in Stress Tolerance

Kirsty Agnoli , Carmen Frauenknecht , Roman Freitag , Stephan Schwager , Christian Jenul et al.

Applied and Environmental Microbiology, 2014, 80 (4), pp.1340-1348. ⟨10.1128/AEM.03330-13⟩

Article dans une revue hal-02381128v1

Genome Sequence of Burkholderia cenocepacia H111, a Cystic Fibrosis Airway Isolate

Aurélien Carlier , Kirsty Agnoli , Gabriella Pessi , Angela Suppiger , Christian Jenul et al.

Genome Announcements, 2014, 2 (2), pp.00298-14. ⟨10.1128/genomeA.00298-14⟩

Article dans une revue hal-02962320v1

N-hexanoyl-l-homoserine lactone,a mediator of bacterial quorum-sensing regulation,exhibits plant-dependent stability and may be inactivated by germinating Lotus corniculatus seedlings.

Laurie Delalande , Denis Faure , Aurélie Raffoux , Stéphane Uroz , Cathy d'Angelo-Picard et al.

FEMS Microbiology Ecology, 2005, 52, pp.13-20. ⟨10.1016/j.femsec.2004.10.005⟩

Article dans une revue istex hal-00019093v1

Bacterial populations in the rhizosphere of tobacco plants producing the quorum-sensing signals hexanoyl-homoserine lactone and 3-oxo-hexanoyl-homoserine lactone.

Cathy d'Angelo-Picard , Denis Faure , Aurélien Carlier , Stéphane Uroz , Aurélie Raffoux et al.

FEMS Microbiology Ecology, 2004, 51 (1), pp.19-29. ⟨10.1016/j.femsec.2004.07.008⟩

Article dans une revue istex hal-00122912v1

The assimilation of gamma-butyrolactone in Agrobacterium tumefaciens C58 interferes with the accumulation of the N-acyl-homoserine lactone signal.

Aurélien Carlier , Romain Chevrot , Yves Dessaux , Denis Faure

Molecular Plant-Microbe Interactions, 2004, 17 (9), pp.951-7

Article dans une revue hal-00122349v1

Novel bacteria degrading N-acylhomoserine lactones and their use as quenchers of quorum-sensing-regulated functions of plant-pathogenic bacteria.

Stéphane Uroz , Cathy d'Angelo-Picard , Aurélien Carlier , Miena Elasri , Carine Sicot et al.

Microbiology, 2003, 149 (8), pp.1981-1989. ⟨10.1099/mic.0.26375-0⟩

Article dans une revue hal-00135468v1

Artificial symbiont replacement in a vertically-transmitted plant-bacterium association provides insights into the basis for specificity

Léa Ninzatti , Thibault Sana , Tessa Acar , Sandra Moreau , Marie-Françoise Jardinaud et al.

2025

Pré-publication, Document de travail hal-05046391v1

Cyclitol secondary metabolism is a central feature of Burkholderia leaf symbionts

Bram Danneels , Monique Blignaut , Guillaume Marti , Simon Sieber , Peter Vandamme et al.

2024

Pré-publication, Document de travail hal-04685355v1

Distinct within-host bacterial populations ensure function, colonization and transmission in leaf symbiosis

Tessa Acar , Sandra Moreau , Olivier Coen , Frédéric de Meyer , Olivier Leroux et al.

2024

Pré-publication, Document de travail hal-04685365v1

Rhizobium leguminosarum symbiovar viciae strains are natural wheat endophytes and can stimulate root development and colonization by arbuscular mycorrhizal fungi

Claudia Bartoli , Stéphane Boivin , Marta Marchetti , Carine Gris , Virginie Gasciolli et al.

2020

Pré-publication, Document de travail hal-02967159v1

CarlierLab/NanoSeq: NanoSeq v0.1.4

Aurélien Carlier , Sandra Moreau

2024, ⟨swh:1:dir:84aeefcbb005fbfcc57bf34d07e6d3bc7ed94ecf;origin=https://hal.archives-ouvertes.fr/hal-04684858;visit=swh:1:snp:ec1c1768b43b8bb46545635f17f412049c4f22dc;anchor=swh:1:rel:cd2f9e24c57d0106a8571fc9f67f035784ba0f21;path=/⟩

Logiciel hal-04684858v1

Whole-Genome Sequencing of Bacterial Endophytes From Fresh and Preserved Plant Specimens

Bram Danneels , Aurélien Carlier

Microbial Environmental Genomics (MEG), 2605, Springer US, pp.133-155, 2023, Methods in Molecular Biology, ⟨10.1007/978-1-0716-2871-3_7⟩

Chapitre d'ouvrage hal-04683453v1

Orrella

Aurélien Carlier

Bergey's Manual of Systematics of Archaea and Bacteria, John Wiley and Sons Inc, 2019, 9781118960608. ⟨10.1002/9781118960608.gbm01819⟩

Chapitre d'ouvrage hal-02790875v1

Microbial Biofilms and Quorum Sensing

Aurélien Carlier , Gabriella Pessi , Leo Eberl

Ben Lugtenberg. Principles of Plant-Microbe Interactions, Springer International Publishing, pp.45-52, 2015, 978-3-319-08574-6. ⟨10.1007/978-3-319-08575-3_7⟩

Chapitre d'ouvrage hal-02962307v1

The endophyte Candidatus Burkholderia crenata of the TCM plant Ardisia crenata produces the selective Gq-inhibitor FR900359

R Reher , I Schamari , S Kehraus , S Annala , M Kuschak et al.

9th Joint Meeting of AFERP, ASP, GA, JSP, PSE & SIF, Jul 2016, Copenhague, Denmark. pp.S1-S381, ⟨10.1055/s-0036-1596736⟩

Communication dans un congrès hal-02962290v1

Optimisation d'un système d'autopartage avec contraintes de relocalisation de véhicules

Aurélien Carlier , Alix Munier-Kordon , Witold Klaudel

16ème conférence ROADEF (ROADEF 2015), Feb 2015, Marseille, France

Communication dans un congrès hal-01784811v1

Optimization of a one-way carsharing system with relocation operations

Aurélien Carlier , Alix Munier-Kordon , Witold Klaudel

10th International Conference on Modeling, Optimization and SIMulation MOSIM 2014, Nov 2014, Nancy, France

Communication dans un congrès hal-01294548v1

Optimal design of a one-way carsharing system including electric vehicles

Aurélien Carlier

Operations Research [math.OC]. Université Pierre et Marie Curie - Paris VI, 2016. English. ⟨NNT : 2016PA066134⟩

Thèse tel-01397234v1

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