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Aurélien Carlier

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  • 1001883
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  • IdHAL aurelien-carlier
  • ResearcherId : M-9671-2016
  • ORCID 0000-0001-7565-1586
  • Google Scholar : https://scholar.google.com/citations?user=g8G93y8AAAAJ&hl=en
  • IdRef : 240121198
  • ResearcherId : http://www.researcherid.com/rid/M-9671-2016
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The association between Dioscorea sansibarensis and Orrella dioscoreae as a model for hereditary leaf symbiosis

Tessa Acar , Sandra Moreau , Marie-Françoise Jardinaud , Gabriella Houdinet , Felicia Maviane-Macia
PLoS ONE, 2024, 19 (4), pp.e0302377. ⟨10.1371/journal.pone.0302377⟩
Journal articles hal-04670561v1

Structures and roles of BcsD and partner scaffold proteins in proteobacterial cellulose secretion

Thibault Sana , Areti Notopoulou , Lucie Puygrenier , Marion Decossas , Sandra Moreau
Current Biology - CB, 2024, 34 (1), pp.106-116.e6. ⟨10.1016/j.cub.2023.11.057⟩
Journal articles hal-04683440v1
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Pseudomonas fortuita sp. nov., isolated from the endosphere of a wild yam

Aurelien Carlier , Marine Beaumel , Sandra Moreau , Tessa Acar , Thibault Géry Sana
International Journal of Systematic and Evolutionary Microbiology, 2024, 74 (6), ⟨10.1099/ijsem.0.006395⟩
Journal articles hal-04659457v1

Govania unica gen. nov., sp. nov., a rare biosphere bacterium that represents a novel family in the class Alphaproteobacteria

Peter Vandamme , Charlotte Peeters , Amanda Hettiarachchi , Margo Cnockaert , Aurélien Carlier
Systematic and Applied Microbiology, 2023, 46 (3), pp.126405. ⟨10.1016/j.syapm.2023.126405⟩
Journal articles hal-04095845v1
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Ecotin: A versatile protease inhibitor of bacteria and eukaryotes

Frédéric de Meyer , Aurélien Carlier
Frontiers in Microbiology, 2023, 14, 8 p. ⟨10.3389/fmicb.2023.1114690⟩
Journal articles hal-04012775v1
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Cyclitol metabolism is a central feature of Burkholderia leaf symbionts

Bram Danneels , Monique Blignaut , Guillaume Marti , Simon Sieber , Peter Vandamme
Environmental Microbiology, 2023, 25 (2), pp.454-472. ⟨10.1111/1462-2920.16292⟩
Journal articles hal-04043115v1
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Motility-Independent Vertical Transmission of Bacteria in Leaf Symbiosis

Tessa Acar , Sandra Moreau , Olivier Coen , Frédéric de Meyer , Olivier Leroux
mBio, 2022, 15 p. ⟨10.1128/mbio.01033-22⟩
Journal articles hal-03778794v1
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Rhizobium leguminosarum symbiovar viciae strains are natural wheat endophytes that can stimulate root development

Claudia Bartoli , Stéphane Boivin , Marta Marchetti , Carine Gris , Virginie Gasciolli
Environmental Microbiology, 2022, 24 (11), pp.5509-5523. ⟨10.1111/1462-2920.16148⟩
Journal articles hal-04204399v2
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Induction of antibiotic specialized metabolism by co‐culturing in a collection of phyllosphere bacteria

Shan Shan Qi , Alexander Bogdanov , Margo Cnockaert , Tessa Acar , Sarah Ranty‐roby
Environmental Microbiology, 2021, 23 (4), pp.2132-2151. ⟨10.1111/1462‐2920.15382⟩
Journal articles hal-03097074v1
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Patterns of transmission and horizontal gene transfer in the Dioscorea sansibarensis leaf symbiosis revealed by whole-genome sequencing

Bram Danneels , Juan Viruel , Krista Mcgrath , Steven Janssens , Nathan Wales
Current Biology - CB, 2021, 31 (12), pp.2666-2673.e4. ⟨10.1016/j.cub.2021.03.049⟩
Journal articles hal-03272495v1

Pedobacter gandavensis sp. nov., Pedobacter foliorum sp. nov. and Pedobacter planticolens sp. nov., isolated from leaves of Arabidopsis thaliana

Shan Shan Qi , Shan Shan Qi , Margo Cnockaert , Aurélien Carlier , Peter Vandamme
International Journal of Systematic and Evolutionary Microbiology, 2021, 71 (3), 8p. ⟨10.1099/ijsem.0.004667⟩
Journal articles hal-03255451v1

Pedobacter gandavensis sp. nov., Pedobacter foliorum sp. nov. and Pedobacter planticolens sp. nov., isolated from leaves of Arabidopsis thaliana

Shan Shan Qi , Margo Cnockaert , Aurélien Carlier , Peter Vandamme
International Journal of Systematic and Evolutionary Microbiology, 2021, 71 (3), pp.004667. ⟨10.1099/ijsem.0.004667⟩
Journal articles hal-04684937v1

Paenibacillus foliorum sp. nov., Paenibacillus phytohabitans sp. nov., Paenibacillus plantarum sp. nov., Paenibacillus planticolens sp. nov., Paenibacillus phytorum sp. nov. and Paenibacillus germinis sp. nov., isolated from the Arabidopsis thaliana phyllosphere

Shan Shan Qi , Margo Cnockaert , Aurélien Carlier , Peter Vandamme
International Journal of Systematic and Evolutionary Microbiology, 2021, 71 (4), 15 p. ⟨10.1099/ijsem.0.004781⟩
Journal articles hal-03592289v1
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PaSiT: a novel approach based on short-oligonucleotide frequencies for efficient bacterial identification and typing

Gleb Goussarov , Ilse Cleenwerck , Mohamed Mysara , Natalie Leys , Pieter Monsieurs
Bioinformatics, 2020, 36 (8), pp.2337-2344. ⟨10.1093/bioinformatics/btz964⟩
Journal articles hal-02961993v1
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Orrella amnicola sp. nov., isolated from a freshwater river, reclassification of Algicoccus marinus as Orrella marina comb. nov., and emended description of the genus Orrella

Shih-Yi Sheu , Li-Chu Chen , Che-Chia Yang , Aurélien Carlier , Wen-Ming Chen
International Journal of Systematic and Evolutionary Microbiology, 2020, 70 (12), pp.6381-6389. ⟨10.1099/ijsem.0.004538⟩
Journal articles hal-03151291v1
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Introducing SPeDE: High-Throughput Dereplication and Accurate Determination of Microbial Diversity from Matrix-Assisted Laser Desorption–Ionization Time of Flight Mass Spectrometry Data

Charles Dumolin , Maarten Aerts , Bart Verheyde , Simon Schellaert , Tim Vandamme
mSystems, 2019, 4 (5), pp.e00437-19. ⟨10.1128/mSystems.00437-19⟩
Journal articles hal-02961994v1

Synthesis and Biological Evaluation of the Novel Growth Inhibitor Streptol Glucoside, Isolated from an Obligate Plant Symbiont

Chien-Chi Hsiao , Simon Sieber , Antri Georgiou , Aurélien Bailly , Despina Emmanouilidou
Chemistry - A European Journal, 2019, 25 (7), pp.1722-1726. ⟨10.1002/chem.201805693⟩
Journal articles hal-02962208v1

Adaptations and evolution of a heritable leaf nodule symbiosis between Dioscorea sansibarensis and Orrella dioscoreae

Frédéric de Meyer , Bram Danneels , Tessa Acar , Rado Rasolomampianina , Mamy Tiana Rajaonah
The International Society of Microbiologial Ecology Journal, 2019, 13 (7), pp.1831-1844. ⟨10.1038/s41396-019-0398-8⟩
Journal articles hal-02961999v1

Abditibacterium utsteinense sp. nov., the first cultivated member of candidate phylum FBP, isolated from ice-free Antarctic soil samples

Guillaume Tahon , Bjorn Tytgat , Liesbeth Lebbe , Aurélien Carlier , Anne Willems
Systematic and Applied Microbiology, 2018, 41 (4), pp.279-290. ⟨10.1016/j.syapm.2018.01.009⟩
Journal articles hal-02962216v1

Leaf nodule symbiosis: function and transmission of obligate bacterial endophytes

Marta Pinto-Carbó , Karl Gademann , Leo Eberl , Aurélien Carlier
Current Opinion in Plant Biology, 2018, 44, pp.23-31. ⟨10.1016/j.pbi.2018.01.001⟩
Journal articles hal-02962213v1

Heterologous expression, biosynthetic studies, and ecological function of the selective Gq-signaling inhibitor FR900359

Max Crüsemann , Raphael Reher , Isabella Schamari , Alexander O. Brachmann , Tsubasa Ohbayashi
Angewandte Chemie International Edition, 2018, 57 (3), pp.836-840. ⟨10.1002/anie.201707996⟩
Journal articles hal-02176996v1

Heterologe Expression, Biosynthese und ökologische Funktion des selektiven Gq‐Signaltransduktionsinhibitors FR900359

Max Crüsemann , Raphael Reher , Isabella Schamari , Alexander Brachmann , Tsubasa Ohbayashi
Angewandte Chemie, 2018, 130 (3), pp.844-849. ⟨10.1002/ange.201707996⟩
Journal articles hal-02962250v1
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Patterns of Nucleotide Deletion and Insertion Inferred from Bacterial Pseudogenes

Bram Danneels , Marta Pinto-Carbó , Aurélien Carlier
Genome Biology and Evolution, 2018, 10 (7), pp.1792-1802. ⟨10.1093/gbe/evy140⟩
Journal articles hal-02962215v1

Comparative Genomics of Burkholderia singularis sp. nov., a Low G+C Content, Free-Living Bacterium That Defies Taxonomic Dissection of the Genus Burkholderia

Peter Vandamme , Charlotte Peeters , Birgit de Smet , Erin Price , Derek Sarovich
Frontiers in Microbiology, 2017, 8, ⟨10.3389/fmicb.2017.01679⟩
Journal articles hal-02962256v1
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Characterization of the emerging zoonotic pathogen Arcobacter thereius by whole genome sequencing and comparative genomics

Francesca Rovetto , Aurélien Carlier , Anne-Marie van den Abeele , Koen Illeghems , Filip van Nieuwerburgh
PLoS ONE, 2017, 12 (7), pp.e0180493. ⟨10.1371/journal.pone.0180493⟩
Journal articles hal-02962265v1
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Comparative genomics of Burkholderia multivorans, a ubiquitous pathogen with a highly conserved genomic structure

Charlotte Peeters , Vaughn Cooper , Philip Hatcher , Bart Verheyde , Aurélien Carlier
PLoS ONE, 2017, 12 (4), pp.e0176191. ⟨10.1371/journal.pone.0176191⟩
Journal articles hal-02962266v1

Draft genome and description of Orrella dioscoreae gen. nov. sp. nov., a new species of Alcaligenaceae isolated from leaf acumens of Dioscorea sansibarensis

Aurélien Carlier , Margo Cnockaert , Linda Fehr , Peter Vandamme , Leo Eberl
Systematic and Applied Microbiology, 2017, 40 (1), pp.11-21. ⟨10.1016/j.syapm.2016.10.002⟩
Journal articles hal-02962291v1

The Essential Genome of Burkholderia cenocepacia H111

Steven Higgins , Maria Sanchez-Contreras , Stefano Gualdi , Marta Pinto-Carbó , Aurélien Carlier
Journal of Bacteriology, 2017, 199 (22), ⟨10.1128/JB.00260-17⟩
Journal articles hal-02962261v1

The genome analysis of C andidatus Burkholderia crenata reveals that secondary metabolism may be a key function of the A rdisia crenata leaf nodule symbiosis

Aurélien Carlier , Linda Fehr , Marta Pinto-Carbó , Till Schäberle , Raphael Reher
Environmental Microbiology, 2016, 18 (8), pp.2507-2522. ⟨10.1111/1462-2920.13184⟩
Journal articles hal-02962301v1

Molecular mechanisms underlying the close association between soil Burkholderia and fungi

Nejc Stopnisek , Daniela Zühlke , Aurélien Carlier , Albert Barberán , Noah Fierer
The International Society of Microbiologial Ecology Journal, 2016, 10 (1), pp.253-264. ⟨10.1038/ismej.2015.73⟩
Journal articles hal-02962318v1

The role of siderophores in metal homeostasis of members of the genus Burkholderia

Anugraha Mathew , Christian Jenul , Aurélien Carlier , Leo Eberl
Environmental Microbiology Reports, 2016, 8 (1), pp.103-109. ⟨10.1111/1758-2229.12357⟩
Journal articles hal-02962305v1

Evidence of horizontal gene transfer between obligate leaf nodule symbionts

Marta Pinto-Carbó , Simon Sieber , Steven Dessein , Thomas Wicker , Brecht Verstraete
The International Society of Microbiologial Ecology Journal, 2016, 10 (9), pp.2092-2105. ⟨10.1038/ismej.2016.27⟩
Journal articles hal-02962299v1
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Mathematical Model for the Study of Relocation Strategies in One-way Carsharing Systems

Aurélien Carlier , Alix Munier-Kordon , Witold Klaudel
Transportation Research Procedia, 2015, 10, pp.374-383. ⟨10.1016/j.trpro.2015.09.087⟩
Journal articles hal-01294551v1

Isolation and Total Synthesis of Kirkamide, an Aminocyclitol from an Obligate Leaf Nodule Symbiont

Simon Sieber , Aurélien Carlier , Markus Neuburger , Giselher Grabenweger , Leo Eberl
Angewandte Chemie International Edition, 2015, 54 (27), pp.7968-7970. ⟨10.1002/anie.201502696⟩
Journal articles hal-02962312v1
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Genome Sequence of Burkholderia cenocepacia H111, a Cystic Fibrosis Airway Isolate

Aurélien Carlier , Kirsty Agnoli , Gabriella Pessi , Angela Suppiger , Christian Jenul
Genome Announcements, 2014, 2 (2), pp.00298-14. ⟨10.1128/genomeA.00298-14⟩
Journal articles hal-02962320v1

The Third Replicon of Members of the Burkholderia cepacia Complex, Plasmid pC3, Plays a Role in Stress Tolerance

Kirsty Agnoli , Carmen Frauenknecht , Roman Freitag , Stephan Schwager , Christian Jenul
Applied and Environmental Microbiology, 2014, 80 (4), pp.1340-1348. ⟨10.1128/AEM.03330-13⟩
Journal articles hal-02381128v1

N-hexanoyl-l-homoserine lactone,a mediator of bacterial quorum-sensing regulation,exhibits plant-dependent stability and may be inactivated by germinating Lotus corniculatus seedlings.

Laurie Delalande , Denis Faure , Aurélie Raffoux , Stéphane Uroz , Cathy d'Angelo-Picard
FEMS Microbiology Ecology, 2005, 52, pp.13-20. ⟨10.1016/j.femsec.2004.10.005⟩
Journal articles hal-00019093v1

The assimilation of gamma-butyrolactone in Agrobacterium tumefaciens C58 interferes with the accumulation of the N-acyl-homoserine lactone signal.

Aurélien Carlier , Romain Chevrot , Yves Dessaux , Denis Faure
Molecular Plant-Microbe Interactions, 2004, 17 (9), pp.951-7
Journal articles hal-00122349v1

Bacterial populations in the rhizosphere of tobacco plants producing the quorum-sensing signals hexanoyl-homoserine lactone and 3-oxo-hexanoyl-homoserine lactone.

Cathy d'Angelo-Picard , Denis Faure , Aurélien Carlier , Stéphane Uroz , Aurélie Raffoux
FEMS Microbiology Ecology, 2004, 51 (1), pp.19-29. ⟨10.1016/j.femsec.2004.07.008⟩
Journal articles hal-00122912v1

Novel bacteria degrading N-acylhomoserine lactones and their use as quenchers of quorum-sensing-regulated functions of plant-pathogenic bacteria.

Stéphane Uroz , Cathy d'Angelo-Picard , Aurélien Carlier , Miena Elasri , Carine Sicot
Microbiology, 2003, 149 (8), pp.1981-1989. ⟨10.1099/mic.0.26375-0⟩
Journal articles hal-00135468v1
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Whole-Genome Sequencing of Bacterial Endophytes From Fresh and Preserved Plant Specimens

Bram Danneels , Aurélien Carlier
Microbial Environmental Genomics (MEG), 2605, Springer US, pp.133-155, 2023, Methods in Molecular Biology, ⟨10.1007/978-1-0716-2871-3_7⟩
Book sections hal-04683453v1

Orrella

Aurélien Carlier
Bergey's Manual of Systematics of Archaea and Bacteria, John Wiley and Sons Inc, 2019, 9781118960608. ⟨10.1002/9781118960608.gbm01819⟩
Book sections hal-02790875v1

Microbial Biofilms and Quorum Sensing

Aurélien Carlier , Gabriella Pessi , Leo Eberl
Ben Lugtenberg. Principles of Plant-Microbe Interactions, Springer International Publishing, pp.45-52, 2015, 978-3-319-08574-6. ⟨10.1007/978-3-319-08575-3_7⟩
Book sections hal-02962307v1