Cédric Cabau

IR bioinformatique à INRAE
55 %
Libre accès
116
Documents
Affiliations actuelles
  • Génétique Physiologie et Systèmes d'Elevage (GenPhySE)
  • Système d'Information des GENomes des Animaux d'Elevage (SIGENAE)
Identifiants chercheurs

Domaines de recherche

Génomique, Transcriptomique et Protéomique [q-bio.GN] Bio-Informatique, Biologie Systémique [q-bio.QM]

Compétences

Genome assembly Genome annotation RNA-Seq Perl Awk Python HTML / CSS / JS

Publications

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Publications

A single-cell atlas of transcriptome changes in the intestinal epithelium at the suckling-to-weaning transition in male rabbits

Tania Malonga , Christelle Knudsen , Julie Alberge , Emeline Lhuillier , Patrick Aymard et al.

Cellular and Molecular Gastroenterology and Hepatology, 2026, 20 (1), pp.101628. ⟨10.1016/j.jcmgh.2025.101628⟩

Article dans une revue hal-05528807v1
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Spatio-temporal diversity and genetic architecture of pyrantel resistance in Cylicocyclus nassatus, the most abundant horse parasite

Guillaume Sallé , Élise Courtot , Cédric Cabau , Hugues Parrinello , Delphine Serreau et al.

Peer Community Journal, 2025, 5, pp.e69. ⟨10.24072/pcjournal.571⟩

Article dans une revue hal-05197483v1
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Detection of DNA methylation signatures through the lens of genomic imprinting

Jean-Noël Hubert , Nathalie Iannuccelli , Cédric Cabau , Eva Jacomet , Yvon Billon et al.

Scientific Reports, 2024, 14 (1), pp.1694. ⟨10.1038/s41598-024-52114-3⟩

Article dans une revue hal-04453257v1
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On the specific status of eastern Mediterranean Dendrophyllia corals (Cnidaria, Anthozoa): Genetic characterization and speciation scenarios

Didier Aurelle , Anne Haguenauer , Chloé Blaise , Lauric Reynes , Sophie Arnaud-Haond et al.

Zoologica Scripta, 2024, 53 (2), pp.235-247. ⟨10.1111/zsc.12643⟩

Article dans une revue hal-04354995v1
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Symbiosis, hybridization and speciation in Mediterranean octocorals (Octocorallia, Eunicellidae)

Didier Aurelle , Anne Haguenauer , Marc Bally , Frédéric Zuberer , Dorian Guillemain et al.

Biological Journal of the Linnean Society, 2024, 143 (4), ⟨10.1093/biolinnean/blae116⟩

Article dans une revue hal-04859569v1
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Multi-genome comparisons reveal gain-and-loss evolution of anti-Mullerian hormone receptor type 2 as a candidate master sex-determining gene in Percidae

Heiner Kuhl , Peter Euclide , Christophe Klopp , Cédric Cabau , Margot Zahm et al.

BMC Biology, 2024, 22 (1), pp.141. ⟨10.1186/s12915-024-01935-9⟩

Article dans une revue hal-04638789v1
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Genome structures resolve the early diversification of teleost fishes

Elise Parey , Alexandra Louis , Jérôme Montfort , Olivier Bouchez , Céline Roques et al.

Science, 2023, 379 (6632), pp.572-575. ⟨10.1101/2022.04.07.487469⟩

Article dans une revue hal-03765882v1
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Rabbit targeted genomic sequences after heterologous hybridization using human exome

Nathalie Iannuccelli , Julien Sarry , Yvon Billon , Patrick Aymard , Virginie Helies et al.

BMC Research Notes, 2022, 15 (1), 3 p. ⟨10.1186/s13104-022-06162-5⟩

Article dans une revue hal-03770192v1
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Generation of a chromosome‐level genome assembly for Pacific halibut ( Hippoglossus stenolepis ) and characterization of its sex‐determining genomic region

Andrew J. Jasonowicz , Anna Simeon , Margot Zahm , Cédric Cabau , Christophe Klopp et al.

Molecular Ecology Resources, 2022, 22 (7), pp.2685-2700. ⟨10.1111/1755-0998.13641⟩

Article dans une revue hal-03737450v1
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An ancient truncated duplication of the anti‐Müllerian hormone receptor type 2 gene is a potential conserved master sex determinant in the Pangasiidae catfish family

Ming Wen , Qiaowei Pan , Elodie Jouanno , Jérôme Montfort , Margot Zahm et al.

Molecular Ecology Resources, 2022, 22 (6), pp.2411-2428. ⟨10.1111/1755-0998.13620⟩

Article dans une revue hal-03652234v1
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A supernumerary “B-sex” chromosome drives male sex determination in the Pachón cavefish, Astyanax mexicanus

Boudjema Imarazene , Kang Du , Séverine Beille , Elodie Jouanno , Romain Feron et al.

Current Biology, 2021, 31 (21), pp.4800-4809.e9. ⟨10.1016/j.cub.2021.08.030⟩

Article dans une revue hal-03337251v1
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Transcriptome Profiling of the Pacific Oyster Crassostrea gigas Visceral Ganglia over a Reproduction Cycle Identifies Novel Regulatory Peptides

Emilie Réalis-Doyelle , Julie Schwartz , Cédric Cabau , Lorane Le Franc , Benoit Bernay et al.

Marine drugs, 2021, 19 (8), pp.452. ⟨10.3390/md19080452⟩

Article dans une revue hal-03330324v1
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A duplicated copy of id2b is an unusual sex-determining candidate gene on the Y chromosome of arapaima (Arapaima gigas)

Mateus Adolfi , Kang Du , Susanne Kneitz , Cédric Cabau , Margot Zahm et al.

Scientific Reports, 2021, 11 (1), pp.21544. ⟨10.1038/s41598-021-01066-z⟩

Article dans une revue hal-03521507v1
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Contrasting gene decay in subterranean vertebrates: insights from cavefishes and fossorial mammals

Maxime Policarpo , Julien Fumey , Philippe Lafargeas , Delphine Naquin , Claude Thermes et al.

Molecular Biology and Evolution, 2021, 38 (2), pp.589-605. ⟨10.1093/molbev/msaa249⟩

Article dans une revue hal-02968373v1
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Genome sequence of the euryhaline Javafish Medaka, Oryzias javanicus: A small aquarium fish model for studies on adaptation to salinity

Yusuke Takehana , Margot Zahm , Cédric Cabau , Christophe Klopp , Céline Roques et al.

G3, 2020, 10 (3), pp.907-915. ⟨10.1534/g3.119.400725⟩

Article dans une revue hal-02624885v1
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Sex chromosome and sex locus characterization in goldfish, Carassius auratus (Linnaeus, 1758)

Ming Wen , Romain Feron , Qiaowei Pan , Justine Guguin , Elodie Jouanno et al.

BMC Genomics, 2020, 21 (1), pp.1-12. ⟨10.1186/s12864-020-06959-3⟩

Article dans une revue hal-02937875v1
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Multi-tissue Siberian sturgeon RNA sequencing data

Christophe Klopp , Cédric Cabau , André Lasalle , Santiago Di Landro , Gonzalo Greif et al.

Data in Brief, 2020, 31, ⟨10.1016/j.dib.2020.105820⟩

Article dans une revue (data paper) hal-03157670v1
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Characterization of a Y‐specific duplication/insertion of the anti‐Mullerian hormone type II receptor gene based on a chromosome‐scale genome assembly of yellow perch, Perca flavescens

Romain Feron , Margot Zahm , Cédric Cabau , Christophe Klopp , Céline Roques et al.

Molecular Ecology Resources, 2020, 20 (2), pp.531-543. ⟨10.1111/1755-0998.13133⟩

Article dans une revue hal-02623895v1
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The sterlet sturgeon genome sequence and the mechanisms of segmental rediploidization

Kang Du , Matthias Stöck , Susanne Kneitz , Christophe Klopp , Joost Woltering et al.

Nature Ecology & Evolution, 2020, 4 (6), pp.841-852. ⟨10.1038/s41559-020-1166-x⟩

Article dans une revue hal-02640938v1
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Synteny-Guided Resolution of Gene Trees Clarifies the Functional Impact of Whole-Genome Duplications

Elise Parey , Alexandra Louis , Cédric Cabau , Yann Guiguen , Hugues Roest Crollius et al.

Molecular Biology and Evolution, 2020, 37 (11), pp.3324 - 3337. ⟨10.1093/molbev/msaa149⟩

Article dans une revue hal-03457579v1
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Siberian sturgeon multi-tissue reference transcriptome database

Christophe Klopp , Cédric Cabau , Gonzalo Greif , André Lasalle , Santiago Di Landro et al.

Database - The journal of Biological Databases and Curation, 2020, 2020, pp.1-8. ⟨10.1093/database/baaa082⟩

Article dans une revue (article de synthèse) hal-03157672v1
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Multi-species annotation of transcriptome and chromatin structure in domesticated animals

Sylvain Foissac , Sarah Djebali , Kylie Munyard , Nathalie Vialaneix , Andrea Rau et al.

BMC Biology, 2019, 17 (1), 25 p. ⟨10.1186/s12915-019-0726-5⟩

Article dans une revue hal-02437599v1
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Functional genomics of the digestive tract in broilers

Amélie Juanchich , Christelle Hennequet-Antier , Cédric Cabau , Elisabeth Le Bihan-Duval , Michel Jacques M.J. Duclos et al.

BMC Genomics, 2018, 19 (1), ⟨10.1186/s12864-018-5344-z⟩

Article dans une revue hal-02623299v1
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Compacting and correcting Trinity and Oases RNA-Seq de novo assemblies

Cédric Cabau , Frédéric Escudie , Anis Djari , Yann Guiguen , Julien Bobe et al.

PeerJ, 2017, 5, pp.e2988. ⟨10.7717/peerj.2988⟩

Article dans une revue hal-01506620v1

Evolution of gene expression after whole-genome duplication: New insights from the spotted gar genome

Jérémy Pasquier , Ingo Braasch , Peter Batzel , Cédric Cabau , Jérôme Montfort et al.

Journal of Experimental Zoology Part B: Molecular and Developmental Evolution, 2017, 328 (7), pp.709 - 721. ⟨10.1002/jez.b.22770⟩

Article dans une revue hal-01788671v1
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Correction : Design and Characterization of a 52K SNP Chip for Goats

Gwenola Tosser-Klopp , Philippe Bardou , Olivier Bouchez , Cédric Cabau , Richard Crooijmans et al.

PLoS ONE, 2016, 11 (3), pp.Non Paginé. ⟨10.1371/journal.pone.0152632⟩

Article dans une revue hal-01602260v1
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Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database.

Jérémy Pasquier , Cédric Cabau , Thuy Thao Vi Nguyen , Elodie Jouanno , Dany Severac et al.

BMC Genomics, 2016, 17 (1), pp.368. ⟨10.1186/s12864-016-2709-z⟩

Article dans une revue hal-01487023v1
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The BioMart community portal: an innovative alternative to large, centralized data repositories

Damian Smedley , Syed Haider , Steffen Durinck , Luca Pandini , Paolo Provero et al.

Nucleic Acids Research, 2015, 43 (W1), pp.W589-W598. ⟨10.1093/nar/gkv350⟩

Article dans une revue hal-01146849v1
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The rainbow trout genome provides novel insights into evolution after whole-genome duplication in vertebrates.

Camille Berthelot , Frédéric Brunet , Domitille Chalopin , Amélie Juanchich , Maria Bernard et al.

Nature Communications, 2014, 5, pp.1-10. ⟨10.1038/ncomms4657⟩

Article dans une revue hal-01193812v1

High-throughput sequencing analyses of XX genital ridges lacking [i]FOXL2[/i] reveal [i]DMRT1[/i] up-regulation before [i]SOX9[/i] expression during the sex-reversal process in goats

Maeva El Zaiat , Luc Jouneau , Dominique Thepot Thépot , Christophe Klopp , Aurélie Allais-Bonnet et al.

Biology of Reproduction, 2014, 91 (6), pp.1-14. ⟨10.1095/biolreprod.114.122796⟩

Article dans une revue hal-01194038v1
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Design and characterization of a 52K SNP chip for goats

Gwenola Tosser-Klopp , Philippe Bardou , Olivier Bouchez , Cédric Cabau , Richard Crooijmans et al.

PLoS ONE, 2014, 9, online (1), Non paginé. ⟨10.1371/journal.pone.0086227⟩

Article dans une revue hal-01019568v1
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RNAbrowse: RNA-Seq de novo assembly results browser.

Jérôme J. Mariette , Céline Noirot , Ibouniyamine Nabihoudine , Philippe Bardou , Claire Hoede et al.

PLoS ONE, 2014, 9 (5), 7 p. ⟨10.1371/journal.pone.0096821⟩

Article dans une revue hal-02636622v1
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An overview of gene expression dynamics during early ovarian folliculogenesis: specificity of follicular compartments and bi-directional dialog

Agnès Bonnet , Cédric Cabau , Olivier Bouchez , Julien Sarry , Nathalie Marsaud et al.

BMC Genomics, 2013, 14 (december), pp.1-19. ⟨10.1186/1471-2164-14-904⟩

Article dans une revue hal-01019557v1
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Induced pluripotent stem cells derived from rabbits exhibit some characteristics of naïve pluripotency

Pierre P. Osteil , Yann Y. Tapponnier , Suzy S. Markossian , Murielle Godet , Barbara B. Panneau et al.

Biology Open, 2013, 2 (6), pp.613-628. ⟨10.1242/bio.20134242⟩

Article dans une revue hal-01000957v1
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Transcriptomic profiling of proteases and antiproteases in the liver of sexually mature hens in relation to vitellogenesis

Marie-Christine Bourin , Joël Gautron , Magali Berges , Christelle Hennequet-Antier , Cédric Cabau et al.

BMC Genomics, 2012, 13, 14 p. ⟨10.1186/1471-2164-13-457⟩

Article dans une revue hal-02644010v1
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Fine mapping of complex traits in non-model species: using next generation sequencing and advanced intercross lines in Japanese quail

Laure Fresard , Sophie Leroux , Patrice Dehais , Bertrand Servin , Hélène Gilbert et al.

BMC Genomics, 2012, 13, online (october), Non paginé. ⟨10.1186/1471-2164-13-551⟩

Article dans une revue hal-01129669v1

An immune-related gene evolved into the master sex-determining gene in Rainbow-trout, Oncorhynchus mykiss

Ayaka Yano , René R. Guyomard , Barbara B. Nicol , Elodie Jouanno , Edwige Quillet et al.

Current Biology, 2012, 22 (15), pp.1423-1428. ⟨10.1016/j.cub.2012.05.045⟩

Article dans une revue hal-01000319v1
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Insulin immuno-neutralization in fed chickens: effects on liver and mucle transcriptome

Jean Simon , Dragan Milenkovic , Estelle Godet , Cédric Cabau , Anne Collin et al.

Physiological Genomics, 2012, 44 (5), pp.283-292. ⟨10.1152/physiolgenomics.00057.2011⟩

Article dans une revue hal-01129580v1
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Development and characterisation of an expressed sequence tags (EST)-derived single nucleotide polymorphisms (SNPs) resource in rainbow trout

Mekki Boussaha , René R. Guyomard , Cédric Cabau , Diane D. Esquerre , Edwige Quillet

BMC Genomics, 2012, 13, online (june), Non paginé. ⟨10.1186/1471-2164-13-238⟩

Article dans une revue hal-01000332v1

Kinetics of gene expression and signaling in bovine cumulus cells throughout IVM in different mediums in relation to oocyte developmental competence, cumulus apoptosis and progesterone secretion

Mohamad Salhab , Lucie Tosca , Cédric Cabau , Pascal Papillier , Christine Perreau et al.

Theriogenology, 2011, 75 (1), pp.90-104. ⟨10.1016/j.theriogenology.2010.07.014⟩

Article dans une revue istex hal-01129418v1
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PhyleasProg: a user-oriented web server for wide evolutionary analyses

Joël Busset , Cédric Cabau , Camille Meslin , Géraldine Pascal

Nucleic Acids Research, 2011, 39 (Web Server issue), pp.W479-W485. ⟨10.1093/nar/gkr243⟩

Article dans une revue hal-01129520v1
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Strengthening insights into host responses to mastitis infection in ruminants by combining heterogeneous microarray data sources

Sem Genini , Bouabid Badaoui , Gert Sclep , Stephen Bishop , Dave Waddington et al.

BMC Genomics, 2011, 12 (1), pp.225. ⟨10.1186/1471-2164-12-225⟩

Article dans une revue inserm-00601542v1
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Gene expression profiling to identify eggshell proteins involved in physical defense of the chicken egg

Vincent Jonchère , Sophie Réhault-Godbert , Christelle Hennequet-Antier , Cédric Cabau , Vonick Sibut et al.

BMC Genomics, 2010, 11 (57), 19 p. ⟨10.1186/1471-2164-11-57⟩

Article dans une revue hal-02662318v1
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Revealing the dynamics of gene expression during embryonic genome activation and first differentiation in the rabbit embryo with a dedicated array screening

Roger Léandri , Catherine Archilla , Linh Chi Bui , Nathalie N. Peynot , Zichuan Liu et al.

Physiological Genomics, 2009, 36 (2), pp.98-113. ⟨10.1152/physiolgenomics.90310.2008⟩

Article dans une revue hal-02658579v1
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Identification of transcripts involved in meiosis and follicle formation during ovine ovary development

Adrienne Baillet , Béatrice Mandon-Pepin , Cédric Cabau , Elodie Poumerol , Eric Pailhoux et al.

BMC Genomics, 2008, 9 (436), 12p. ⟨10.1186/1471-2164-9-436⟩

Article dans une revue hal-02658492v1
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Molecular evidence for a critical period in mural trophoblast development in bovine blastocysts

Severine S. Degrelle , Evelyne E. Campion , Cédric Cabau , François Piumi , Pierrette P. Reinaud et al.

Developmental Biology, 2005, 288 (2), pp.448-460. ⟨10.1016/j.ydbio.2005.09.043⟩

Article dans une revue inserm-02440263v1

In the QTL region surrounding porcine MHC, gene order is conserved with human genome

Carine Genet , Christine Renard , Cédric Cabau , Claire Rogel Gaillard , Joël Gellin et al.

Mammalian Genome, 2001, 12, pp.246-249

Article dans une revue hal-02673114v1

IMpRH server: an RH mapping server available on the Web

Denis Milan , R. Hawken , Cédric Cabau , Sophie S. Leroux , Carine Genet et al.

Bioinformatics, 2000, 16 (6), pp.558-559

Article dans une revue hal-02686305v1
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Exemple d'approche fonctionnelle : la fonction ovarienne dans l'espèce porcine

Gwenola Tosser-Klopp , C. Clouscard-Martinato , Francis Benne , Agnès Bonnet , Cédric Cabau et al.

Productions Animales, 2000, HS 2000, pp.165-167

Article dans une revue hal-02687687v1
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Targeting the pig imprintome with EM-seq

Jean-Noël Hubert , Nathalie Iannuccelli , Mathilde Perret , Cédric Cabau , Eva Jacomet et al.

2024 Environnemental and Agronomical Genomics Symposium, Feb 2024, Toulouse, France.

Poster de conférence hal-04668372v1

Single cell transcriptomics reveal that initiation of solid food intake triggers the maturation of caecal lamina propria immune cells in suckling rabbits

Christelle Knudsen , Tania Malonga , Mathilde Rumeau , Emeline Lhuillier , Cédric Cabau et al.

International Congress of Mucosal Immunology (ICMI), Jul 2024, Copenhague, Denmark

Poster de conférence hal-04827627v1
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A methyl-seq tool to capture genomic imprinted loci

Jean-Noël Hubert , Nathalie Iannuccelli , Cédric Cabau , Eva Jacomet , Yvon Billon et al.

Genomic Imprinting - from Biology to Disease, Mar 2023, Hinxton, United Kingdom

Poster de conférence hal-04198129v1

Le séquençage de l'ARNm en cellules uniques (scRNA-seq): un outil pour étudier la diversité des cellules CD45+ de la lamina propria du cæcum du lapin

Christelle Knudsen , Frédéric Martins , Cédric Cabau , Alexia Zakaroff-Girard , Elodie Riant et al.

Symposium du club d'immunologie et de vaccinologie vétérinaires, May 2023, Toulouse, France

Poster de conférence hal-04827525v1
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A bioinformatics pipeline to detect imprinting from methyl-seq trio data

Jean-Noël Hubert , Mathilde Perret , Nathalie Iannuccelli , Eva Jacomet , Cédric Cabau et al.

Genomic Imprinting - from Biology to Disease, Mar 2023, Hinxton, United Kingdom

Poster de conférence hal-04198079v1

Single cell RNA-sequencing: a tool to study the diversity of the lamina propria CD45+ cells in the rabbit caecum

Christelle Knudsen , Frédéric Martins , Cédric Cabau , Alexia Zakaroff-Girard , Elodie Riant et al.

20th International Congress of Mucosal Immunology (ICMI2022), Jul 2022, Seattle, United States

Poster de conférence hal-04054303v1
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Vers une carte de l'imprintome porcin

Jean-Noël Hubert , Nathalie Iannuccelli , Cédric Cabau , Rémy-Félix Serre , Céline Vandecasteele et al.

Journées Scientifiques du Département de Génétique Animale, Sep 2022, Bordeaux, France

Poster de conférence hal-04099355v1

Relationship between feed efficiency and functionality of the digestive tract in broilers : a transcriptomic analysis

Amélie Juanchich , Christelle Hennequet-Antier , Cédric Cabau , Elisabeth Duval , Michel Jacques M.J. Duclos et al.

European Symposium on Poultry Nutrition, Jun 2019, Gdansk, Poland. 2019

Poster de conférence hal-02788677v1

Integrative analyses of chromosome conformation, chromatin accessibility and gene expression in human and livestock genomes

Camille Mestre , Sarah Djebali Quelen , Thomas Faraut , Nathalie Vialaneix , Andrea Rau et al.

European Conference on Computational Biology (ECCB 2018), Sep 2018, Athènes, Greece. , 2018

Poster de conférence hal-02784857v1

Integrative and differential analysis of transcriptomes and chromatin accessibility regions reveals regulatory mechanisms involved in pig immune and metabolic functions

Sarah Djebali Quelen , Kylie Munyard , Nathalie Villa-Vialaneix , Cédric Cabau , Andrea Rau et al.

36th International Society for Animal Genetics Conference, Jul 2017, Dublin, Ireland. 2017, ISAG 2017 - Genomes to Phenomes - Abstract Book

Poster de conférence hal-01603033v1
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Long-non coding RNAs repertoires in liver and two T lymphocyte cell types in four livestock species

Kévin Muret , Sarah Djebali Quelen , Thomas Derrien , Cédric Cabau , Christophe Klopp et al.

36. Conference of the International Society for Animal Genetics (ISAG), Jul 2017, Dublin, Ireland. 2017, ISAG 2017 - Genomes to Phenomes - Abstract Book

Poster de conférence hal-01621915v1
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Profiling the landscape of transcription, chromatin accessibility and chromosome conformation of cattle, pig, chicken and goat genomes [FAANG pilot project]

Sylvain Foissac , Sarah Djebali Quelen , Hervé Acloque , Philippe Bardou , Fany Blanc et al.

36th International Society for Animal Genetics Conference, Jul 2017, Dublin, Ireland. 2017, ISAG 2017 - Genomes to Phenomes - Abstract Book

Poster de conférence hal-01608449v1
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Functional genomics of the digestive function in broilers

Amélie Juanchich , Christelle Hennequet-Antier , Cédric Cabau , Elisabeth Duval , Michel Jacques M.J. Duclos et al.

10th European Symposium on Poultry Genetics, Jun 2017, Saint-Malo, France. 2017, Proceedings of the 10th european Symposoium on Poultry Genetics

Poster de conférence hal-01606214v1

Early response of epithelial cells to<em> Eimeria tenella</em> infection

Françoise Bussière , Yan Jaszczyszyn , Cédric Cabau , Christelle Hennequet , Alisson Niepceron et al.

11. International Coccidiosis Conference, Sep 2014, Dresden, Germany. 2014

Poster de conférence hal-02739154v1

Réponse précoce de l'hôte à l'infection par <em>Eimeria tenella</em>

Françoise Bussière , Yan Jaszczyszyn , Cédric Cabau , Christelle Hennequet , Patricia Berthon et al.

Journées d'Animation Scientifique du Département Santé Animale, Oct 2013, Cap d'Agde, France. 2013, Santé animale et santé publique

Poster de conférence hal-02748207v1

The PhyloFish project: an RNA-Seq approach coupled to high throughput phylogenomic analyses to study whole genome duplication impact on teleosts

Jérémy Pasquier , Cédric Cabau , P. Gouret , L. Journot , Christophe Klopp et al.

17. Evolutionary Biology Meeting at Marseilles, Sep 2013, Marseille, France. 2013, 17th Evolutionary Biology Meeting at Marseilles

Poster de conférence hal-02745585v1

Early response of epithelial cells to Eimeria tenella infection

Françoise I. Bussière , Yan Jaszczyszyn , Cédric Cabau , Christelle Hennequet-Antier , Fabien Brossier

ApiCOWplexa 2012 International Meeting on Apicomplexan Parasites in Farm Animals, Oct 2012, Lisbonne, Portugal. Sociedade Portuguesa de Ciências Veterinárias, 176 p., 2012, Proceedings Apicomplexa in farm animals

Poster de conférence hal-01416827v1

Characterization of a conserved master sex-determining gene in salmonids

Yann Guiguen , Ayaka Yano , Barbara Nicol , Elodie Jouanno , René Guyomard et al.

1. International Conference on Integrative Salmonid Biology ICISB, Jun 2012, Oslo, Norway. 2012, ICISB 2012

Poster de conférence hal-01267802v1

Identification of genes expressed during sheep ovarian development

Adrienne Baillet , Béatrice Mandon-Pepin , Cédric Cabau , Elodie Poumerol , Eric Pailhoux et al.

16. International Congress on Animal Reproduction (ICAR), Jul 2008, Budapest, Hungary. Reproduction in Domestic Animals, 43 (Suppl. 3), pp.145-145, 2008, ⟨10.1111/j.1439-0531.2008.01234.x⟩

Poster de conférence istex hal-02751476v1

Chicken and pig normalised multi-tissue cDNA libraries

Agnès Bonnet , Frédéric Herault , Gwenola Tosser-Klopp , Valérie Metzinger-Le Meuth , F. Benne et al.

XXVIII International Conference on Animal Genetics, Aug 2002, Göttingen, Germany. pp.38, 2002, Proceedings 2002

Poster de conférence hal-02649319v1

Localisation de 10 genes sur la carte génétique de la poule

Frederique Pitel , Florence Plisson-Petit , Cédric Cabau , Sandrine Lagarrigue , Mohammed Taouis et al.

Colloque annuel S.F.G. - Génomique Comparative, Apr 1999, Toulouse, France. 1 p., 1999

Poster de conférence hal-02835659v1
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La transcriptomique en cellule unique révèle les processus de maturation induits dans chaque type de cellule épithéliale intestinale lors de l'introduction de l'alimentation solide

Tania Malonga , Christelle Knudsen , Emeline Lhuillier , Patrick Aymard , Elodie Riant et al.

CECED 2024, Club des Cellules Epithéliales Digestives, Mar 2024, Montpellier, France. pp.P12

Communication dans un congrès hal-04527178v1
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Targeting the pig imprintome

Jean-Noël Hubert , Nathalie Iannuccelli , Cédric Cabau , Rémy-Félix Serre , Céline Vandecasteele et al.

Advances in Genome Biology and Technology Agriculture (AGBT-Ag), Apr 2022, San Diego, United States

Communication dans un congrès hal-04099166v1

Heterologous hybridization using the human exome - a molecular tool to target and identify major genes

Nathalie Iannuccelli , Cédric Cabau , Julien Sarry , Olivier Bouchez , Yvon Billon et al.

World Rabbit Congress, Nov 2021, Nantes, France

Communication dans un congrès hal-03404641v1

Transcriptome de la complémentarité des fonctions entre le gésier et la jonction gastroduodénale chez le poulet de chair

Amélie Juanchich , Christelle Hennequet-Antier , Cédric Cabau , Elisabeth Le Bihan-Duval , Michel Jacques M.J. Duclos et al.

13. Journées de la Recherche Avicole et Palmipèdes à Foie Gras, Mar 2019, Tours, France

Communication dans un congrès hal-03614963v1

Transcriptome de la complémentarité des fonctions entre le gésier et la jonction gastro-duodénale chez le poulet de chair

Amélie Juanchich , Christelle Hennequet-Antier , Cédric Cabau , Elisabeth Duval , Michel Jacques M.J. Duclos et al.

13. Journées de la Recherche Avicole et Palmipèdes à Foie Gras, Mar 2019, Tours, France

Communication dans un congrès hal-02735696v1

Temporal expression of hen uterine transcripts at key steps of shell mineralization

Joël Gautron , Aurélien Brionne , Olivier Bouchez , Cédric Cabau , Christelle Hennequet-Antier et al.

XVII European Symposium on the Quality of Eggs and Egg Products and XXIII European Symposium on the Quality of Poultry Meat ‘EggMeat 2017, Sep 2017, Edinburgh, United Kingdom

Communication dans un congrès hal-02733489v1
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Temporal Expression of Hen Uterine transcripts at key step of shell mineralization

Joël Gautron , Aurélien Brionne , Olivier Bouchez , Cédric Cabau , Christelle Hennequet-Antier et al.

14th International Symposium on Biomineralization, Oct 2017, Tsukuba, Japan

Communication dans un congrès hal-02733493v1

Identification de gènes impliqués dans le contrôle des fonctions digestives chez le poulet de chair

Amélie Juanchich , Christelle Hennequet-Antier , Cédric Cabau , Elisabeth Duval , Michel Jacques M.J. Duclos et al.

12. Journées de la Recherche Avicole et des Palmipèdes à Foie Gras, Apr 2017, Tours, France. 1124 p

Communication dans un congrès hal-01605115v1

Evolution of gene expression in fish: The PhyloFish database

Jérémy Pasquier , Cédric Cabau , Thuy Thao Vi Nguyen , Elodie Dupin-De-Beyssat , Dany Severac et al.

8. Aquatic Models of Human Disease Conference, Jan 2017, Birmingham, United States

Communication dans un congrès hal-01607208v1

Oocytomics: combining transcriptomics and proteomics to understand post-transcriptional regulation in bovine oocytes

Rozenn Dalbies-Tran , Christelle Hennequet-Antier , Cédric Cabau , Leslie Angulo , Sylvain Auclair et al.

1. International Symposium of Microgenomics, Institut National de Recherche Agronomique (INRA). UMR Génétique Animale et Biologie Intégrative (1313)., May 2014, Paris, France

Communication dans un congrès hal-02740352v1
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DMRT1 turns on testicular differentiation during XX sex-reversal in the goat

Maeva El Zaiat , Luc Jouneau , Dominique Thepot Thépot , Christophe Klopp , Aurélie Allais-Bonnet et al.

18. European Testis Workshop, May 2014, Elsinore, Denmark. 1 p

Communication dans un congrès hal-01193822v1
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Integration of European eel transcriptome into the PHYLOFISH project, a high throughput phylogenomic analysis designed to study teleost gene evolution after whole genome duplication

Jérémy Pasquier , Cédric Cabau , P. Gouret , L. Journot , Christophe Klopp et al.

Eel genome symposium 2014, Jan 2014, Leiden, Netherlands

Communication dans un congrès hal-02743789v1

New advances on egg proteins and their potential for food and non food uses

Joël Gautron , Sophie Réhault-Godbert , Aurélien Brionne , Cédric Cabau , Nicolas Guyot et al.

104th AOCS Annual Meeting and Expo, Apr 2013, Montreal, Canada

Communication dans un congrès hal-02808179v1
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MilkChEST, an integrative approach of the secretion pathways in the mammary epithelial cell: molecular dissection of milk fat adaptability

Christine Leroux , Christian Beauvallet , Laurence Bernard , Claudia Bevilacqua , Frédéric Bouvier et al.

European Regional Conference On Goats, Jun 2013, Tromsø, Norway

Communication dans un congrès hal-01194090v1

Transcriptome diversity at multi- and single-cell levels in rabbit pluripotent stem cells

Yann Tapponnier , Pierre Osteil , Barbara Panneau , Luc Jouneau , Cédric Cabau et al.

11. Annual Meeting International Society for Stem Cell Research (ISSCR), International Society of Stem Cell Research (ISSCR). INT., Jun 2013, Boston, United States. 1 p

Communication dans un congrès hal-01198231v1

An immune-related gene evolved into a conserved master sex-determining gene in the salmonid fish family

Ayaka Yano , René Guyomard , Barbara Nicol , Elodie Jouanno , Edwige Quillet et al.

Conférences Jacques Monod: “Avancées récentes sur l'évolution du sexe et des systèmes génétiques", May 2013, Roscoff, France

Communication dans un congrès hal-01194065v1

Involvment of [i]DMRT1[/i] in XX sex-reversed polled goats

Maeva Elzaiat , Dominique Thepot Thépot , Luc Jouneau , Aurélie Allais-Bonnet , Christophe Klopp et al.

6. International Symposium on the Biology of Vertebrate Sex Determination, Vertebrate-biosex. USA., Apr 2012, Kona, Hawai, United States. 1 p

Communication dans un congrès hal-01019618v1

New insights into sex differentiation and determination for a better sex control in salmonids

Ayaka Yano , Barbara B. Nicol , René R. Guyomard , Elodie Jouanno , Edwige Quillet et al.

Aqua 2012, European Aquaculture Society (EAS). BEL., Sep 2012, Prague, Czech Republic

Communication dans un congrès hal-02744513v1

GENIDOV: Gene network involved in ovarian development in goat and mouse

Eric Pailhoux , Maëlle Pannetier , Dominique Thepot Thépot , Geneviève Jolivet , Ikrame Naciri et al.

9. Colloque Agenae / ANR, Colloque Génomique Animale et Microbienne, AGENAE - Analyse du Génome des Animaux d'Elevage (AGENAE). FRA., Mar 2012, La Rochelle, France. 1 p

Communication dans un congrès hal-01193796v1

Goat genome assembly, availability of an international 50K SNP chip and RH panel: an update of the international goat genome consortium projects

Gwenola Tosser-Klopp , Cédric Cabau , Andre Eggen , Thomas Faraut , Henri Heuven et al.

20. Conference of the Plant & Animal Genome, Plant & Animal Genome (PAG). USA., Jan 2012, San Diego, United States. 28 diapositives

Communication dans un congrès hal-01019243v1

Activités biologiques du jaune d'oeuf : exemple du système protéases/antiprotéases

Sophie Réhault-Godbert , Marie-Christine Bourin , Joël Gautron , Magali Berges , Christelle Hennequet-Antier et al.

Journée Technique Avicole 2012 du SYSAAF, Syndicat des Sélectionneurs Avicoles et Aquacoles Français (SYSAAF). FRA., Mar 2012, Tours, France

Communication dans un congrès hal-02809620v1

Caractérisation d'un gène déterminant majeur du sexe conservé chez les salmonidés

Ayaka Yano , René R. Guyomard , Elodie Jouanno , Barbara B. Nicol , Christophe Klopp et al.

3. Journées de la Recherche Filière Piscicole, Jul 2012, Paris, France. pp.109

Communication dans un congrès hal-01000327v1

New insights on sex determination in salmonids

Ayaka Yano , René Guyomard , Elodie Jouanno , Barbara Nicol , Edwige Quillet et al.

6. International Symposium on The Biology of Vertebrate Sex Determination, Apr 2012, Kona (Hawaii), United States. pp.45

Communication dans un congrès hal-01019433v1
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Towards a high density SNP International Goat Chip

Gwenola Tosser-Klopp , Abdullah Johari Jiken , Philippe Bardou , Cédric Cabau , Patrice Dehais et al.

Plant and Animal Genome, Jan 2011, San Diégo, United States

Communication dans un congrès hal-01194170v1

New insights in egg proteins applying cDNA microarrays to hen oviduct and liver and extensive proteomic data mining

Joël Gautron , Aurélien Brionne , Marie-Christine Bourin , Christelle Hennequet-Antier , Cédric Cabau et al.

5. Combined Workshop on Fundamental Physiology and Perinatal Development in Poultry, Aug 2011, Wageningen, Netherlands

Communication dans un congrès hal-02802514v1

New insights in egg white proteins using cDNA microarrays and extensive proteomic data mining

Joël Gautron , Aurélien Brionne , Christelle Hennequet-Antier , Cédric Cabau , Nicolas Guyot et al.

14. European Symposium on the Quality of Eggs and Egg Products, Sep 2011, Leipzig, Germany

Communication dans un congrès hal-02747495v1

Identification of transcripts involved in meiosis and follicle formation during ovine ovary development

Béatrice Mandon-Pepin , Adrienne Baillet , Cédric Cabau , Elodie Poumerol , Eric Pailhoux et al.

6. Workshop on Mammalian Folliculogenesis and oogenesis : from basic science to the clinic, Oct 2009, Potsdam, Germany. p:18

Communication dans un congrès hal-02819495v1

Screening of novel uterine proteins involved in eggshell formation using cDNA microarrays

Vincent Jonchère , Sophie Réhault-Godbert , L. Cogburn , Christelle Hennequet-Antier , Cédric Cabau et al.

19. European Symposium on the Quality of Poultry Meat. 13. European Symposium on the Quality of Eggs and Eggs Products., Jun 2009, Turku, Finland

Communication dans un congrès hal-02751521v1

Identification par une approche transcriptomique d'un ensemble de protéines potentiellement impliquées dans la formation de la coquille de l'oeuf de poule

Vincent Jonchère , Yves Y. Nys , L. Cogburn , Christelle Hennequet-Antier , Cédric Cabau et al.

11. Journées Françaises de Biologie des Tissus Minéralisés, Mar 2009, Nice, France

Communication dans un congrès hal-02756159v1

Identification de nouveaux genes de la coquille potentiellement impliqués dans les défenses naturelles de l'oeuf

Vincent Jonchère , Sophie Réhault-Godbert , Christelle Hennequet , Cédric Cabau , Vonick Sibut et al.

8. Journées de la Recherche Avicole, Mar 2009, Saint-Malo, France

Communication dans un congrès hal-02751014v1

Use of high-throughput methods to identify novel egg components

Joël Gautron , Vincent Jonchère , Christelle Hennequet-Antier , Cédric Cabau , Valérie Labas et al.

25. Congrès de la Société d'Electrophorèse et d'Analyse Protéomique, Oct 2008, Tours, France

Communication dans un congrès hal-02751763v1

Vers l'obtention d'une carte physique chez la truite Arc-en-ciel.

Carine Genet , Patrice Dehais , Cédric Cabau , Y. Palti

Journées Scientifiques, Département de Génétique Animale, Apr 2008, Lacanau, France

Communication dans un congrès hal-02752590v1

Rabbit as a model for embryo development

Véronique Duranthon , Roger Léandri , Catherine Archilla , Cédric Vignal , Cédric Cabau et al.

2. International Meeting on Rabbit Biotechnology, Jun 2007, Jouy en Josas, France. 1 p

Communication dans un congrès hal-02823822v1

A pig normalised multi-tissue cDNA library

Agnès Bonnet , Gwenola Tosser-Klopp , Francis Benne , Cédric Cabau , S. Villeger et al.

7th World Congress on Genetics Applied to Livestock Production, 2002, Montpellier, pp.Inconnu

Communication dans un congrès hal-02832597v1

High resolution mapping of 148 type I markers in pigs

Cédric Cabau , Sophie S. Leroux , Yvette Lahbib Mansais , Gwenola Tosser-Klopp , Denis Milan et al.

27. International Conference on Animal Genetics, Jul 2000, Minnesota, United States

Communication dans un congrès hal-02769097v1

Exemple d'approche fonctionnelle : la fonction ovarienne du porc.

Gwenola Tosser-Klopp , Catherine Clouscard-Martinato , Francis Benne , Agnès Bonnet , Cédric Cabau et al.

Séminaire, La génétique moléculaire et ses applications, Sep 1999, Cap d Agde, France

Communication dans un congrès hal-02766107v1

A methyl-seq tool to capture genomic imprinted loci

Jean-Noël Hubert , Nathalie Iannuccelli , Cédric Cabau , Eva Jacomet , Yvon Billon et al.

2023

Pré-publication, Document de travail hal-04099373v1
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Synteny-guided resolution of gene trees clarifies the functional impact of whole genome duplications

Elise Parey , Alexandra Louis , Cédric Cabau , Yann Guiguen , Hugues Roest-Crollius et al.

2020

Pré-publication, Document de travail (preprint/prepublication) hal-02791038v1
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Sex chromosome and sex locus characterization in the goldfish, Carassius auratus

Ming Wen , Romain Feron , Qiaowei Pan , Justine Guguin , Elodie Jouanno et al.

2019

Pré-publication, Document de travail (preprint/prepublication) hal-02790844v1
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Genome sequence of the euryhaline Javafish medaka, Oryzias javanicus: a small aquarium fish model for studies on adaptation to salinity

Yusuke Takehana , Margot Zahm , Cédric Cabau , Christophe Klopp , Céline Roques et al.

2019

Pré-publication, Document de travail (preprint/prepublication) hal-02790965v1
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Characterization of a Y-specific duplication/insertion of the anti-Mullerian hormone type II receptor gene based on a chromosome-scale genome assembly of yellow perch, Perca flavescens

Romain Feron , Margot Zahm , Cédric Cabau , Christophe Klopp , Céline Roques et al.

2019

Pré-publication, Document de travail (preprint/prepublication) hal-02790966v1
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Livestock genome annotation: transcriptome and chromatin structure profiling in cattle, goat, chicken and pig

Sylvain Foissac , Sarah Djebali , Kylie Munyard , Nathalie Vialaneix , Andrea Rau et al.

2018

Pré-publication, Document de travail (preprint/prepublication) hal-02791029v1
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Evolution of gene expression after whole-genome duplication: new insights from the spotted gar genome

Jérémy Pasquier , Ingo Braasch , Peter Batzel , Cédric Cabau , Jérôme Montfort et al.

2017

Pré-publication, Document de travail (preprint/prepublication) hal-02791027v1

Molecules involved in chemical defence of the chicken egg

Sophie Réhault-Godbert , Virginie Herve-Grepinet , Joël Gautron , Cédric Cabau , Yves Y. Nys et al.

Improving the safety and quality of eggs and egg products. Vol.1 Egg chemistry, production and consumption, 213, Woodhead Publishing Ltd, 2011, Woodhead Publishing Series in Food Science, Technology and Nutrition, 978-1-84569-754-9

Chapitre d'ouvrage hal-02805911v1