Cédric Cabau

IR bioinformatique à INRAE
55%
Libre accès
115
Documents
Affiliations actuelles
  • Génétique Physiologie et Systèmes d'Elevage (GenPhySE)
  • Système d'Information des GENomes des Animaux d'Elevage (SIGENAE)
Identifiants chercheurs

Domaines de recherche

Génomique, Transcriptomique et Protéomique [q-bio.GN] Bio-Informatique, Biologie Systémique [q-bio.QM]

Compétences

Genome assembly Genome annotation RNA-Seq Perl Awk Python HTML / CSS / JS

Publications

52
30
22
18
16
15
13
13
11
11
11
11
10
10
10
9
9
9
8
8
8
8
8
7
7
7
7
7
7
7
6
6
6
6
6
6
6
6
6
6
6
6
6
6
6
5
5
5
5
5
5
5
5
5
5
5
5
5
5
5
5
5
4
4
4
4
4
4
4
4
4
4
4
4
4
4
4
4
4
4
4
4
4
4
4
4
4
4
4
4
4
4
3
3
3
3
3
3
3
1
7
5
6
5
9
6
3
12
2
1
9
8
14
7
1
5
4
1
1
2
1
3
2
66
14
6
3
3
3
3
3
2
2
2
2
1
1
1
1
1
1

Publications

Image document

Spatio-temporal diversity and genetic architecture of pyrantel resistance in Cylicocyclus nassatus, the most abundant horse parasite

Guillaume Sallé , Élise Courtot , Cédric Cabau , Hugues Parrinello , Delphine Serreau et al.
Peer Community Journal, 2025, 5, pp.e69. ⟨10.24072/pcjournal.571⟩
Article dans une revue hal-05197483 v1
Image document

On the specific status of eastern Mediterranean Dendrophyllia corals (Cnidaria, Anthozoa): Genetic characterization and speciation scenarios

Didier Aurelle , Anne Haguenauer , Chloé Blaise , Lauric Reynes , Sophie Arnaud-Haond et al.
Zoologica Scripta, 2024, 53 (2), pp.235-247. ⟨10.1111/zsc.12643⟩
Article dans une revue hal-04354995 v1
Image document

Symbiosis, hybridization and speciation in Mediterranean octocorals (Octocorallia, Eunicellidae)

Didier Aurelle , Anne Haguenauer , Marc Bally , Frédéric Zuberer , Dorian Guillemain et al.
Biological Journal of the Linnean Society, 2024, 143 (4), ⟨10.1093/biolinnean/blae116⟩
Article dans une revue hal-04859569 v1
Image document

Multi-genome comparisons reveal gain-and-loss evolution of anti-Mullerian hormone receptor type 2 as a candidate master sex-determining gene in Percidae

Heiner Kuhl , Peter Euclide , Christophe Klopp , Cédric Cabau , Margot Zahm et al.
BMC Biology, 2024, 22 (1), pp.141. ⟨10.1186/s12915-024-01935-9⟩
Article dans une revue hal-04638789 v1
Image document

Detection of DNA methylation signatures through the lens of genomic imprinting

Jean-Noël Hubert , Nathalie Iannuccelli , Cédric Cabau , Eva Jacomet , Yvon Billon et al.
Scientific Reports, 2024, 14 (1), pp.1694. ⟨10.1038/s41598-024-52114-3⟩
Article dans une revue hal-04453257 v1
Image document

Genome structures resolve the early diversification of teleost fishes

Elise Parey , Alexandra Louis , Jérôme Montfort , Olivier Bouchez , Céline Roques et al.
Science, 2023, 379 (6632), pp.572-575. ⟨10.1101/2022.04.07.487469⟩
Article dans une revue hal-03765882 v1
Image document

Rabbit targeted genomic sequences after heterologous hybridization using human exome

Nathalie Iannuccelli , Julien Sarry , Yvon Billon , Patrick Aymard , Virginie Helies et al.
BMC Research Notes, 2022, 15 (1), 3 p. ⟨10.1186/s13104-022-06162-5⟩
Article dans une revue hal-03770192 v1
Image document

Generation of a chromosome‐level genome assembly for Pacific halibut ( Hippoglossus stenolepis ) and characterization of its sex‐determining genomic region

Andrew J. Jasonowicz , Anna Simeon , Margot Zahm , Cédric Cabau , Christophe Klopp et al.
Molecular Ecology Resources, 2022, 22 (7), pp.2685-2700. ⟨10.1111/1755-0998.13641⟩
Article dans une revue hal-03737450 v1
Image document

An ancient truncated duplication of the anti‐Müllerian hormone receptor type 2 gene is a potential conserved master sex determinant in the Pangasiidae catfish family

Ming Wen , Qiaowei Pan , Elodie Jouanno , Jérôme Montfort , Margot Zahm et al.
Molecular Ecology Resources, 2022, 22 (6), pp.2411-2428. ⟨10.1111/1755-0998.13620⟩
Article dans une revue hal-03652234 v1
Image document

Transcriptome Profiling of the Pacific Oyster Crassostrea gigas Visceral Ganglia over a Reproduction Cycle Identifies Novel Regulatory Peptides

Emilie Réalis-Doyelle , Julie Schwartz , Cédric Cabau , Lorane Le Franc , Benoit Bernay et al.
Marine drugs, 2021, 19 (8), pp.452. ⟨10.3390/md19080452⟩
Article dans une revue hal-03330324 v1
Image document

A duplicated copy of id2b is an unusual sex-determining candidate gene on the Y chromosome of arapaima (Arapaima gigas)

Mateus Adolfi , Kang Du , Susanne Kneitz , Cédric Cabau , Margot Zahm et al.
Scientific Reports, 2021, 11 (1), pp.21544. ⟨10.1038/s41598-021-01066-z⟩
Article dans une revue hal-03521507 v1
Image document

Contrasting gene decay in subterranean vertebrates: insights from cavefishes and fossorial mammals

Maxime Policarpo , Julien Fumey , Philippe Lafargeas , Delphine Naquin , Claude Thermes et al.
Molecular Biology and Evolution, 2021, 38 (2), pp.589-605. ⟨10.1093/molbev/msaa249⟩
Article dans une revue hal-02968373 v1
Image document

A supernumerary “B-sex” chromosome drives male sex determination in the Pachón cavefish, Astyanax mexicanus

Boudjema Imarazene , Kang Du , Séverine Beille , Elodie Jouanno , Romain Feron et al.
Current Biology, 2021, 31 (21), pp.4800-4809.e9. ⟨10.1016/j.cub.2021.08.030⟩
Article dans une revue hal-03337251 v1
Image document

Characterization of a Y‐specific duplication/insertion of the anti‐Mullerian hormone type II receptor gene based on a chromosome‐scale genome assembly of yellow perch, Perca flavescens

Romain Feron , Margot Zahm , Cédric Cabau , Christophe Klopp , Céline Roques et al.
Molecular Ecology Resources, 2020, 20 (2), pp.531-543. ⟨10.1111/1755-0998.13133⟩
Article dans une revue hal-02623895 v1
Image document

Sex chromosome and sex locus characterization in goldfish, Carassius auratus (Linnaeus, 1758)

Ming Wen , Romain Feron , Qiaowei Pan , Justine Guguin , Elodie Jouanno et al.
BMC Genomics, 2020, 21 (1), pp.1-12. ⟨10.1186/s12864-020-06959-3⟩
Article dans une revue hal-02937875 v1
Image document

Multi-tissue Siberian sturgeon RNA sequencing data

Christophe Klopp , Cédric Cabau , André Lasalle , Santiago Di Landro , Gonzalo Greif et al.
Data in Brief, 2020, 31, ⟨10.1016/j.dib.2020.105820⟩
Article dans une revue (data paper) hal-03157670 v1
Image document

The sterlet sturgeon genome sequence and the mechanisms of segmental rediploidization

Kang Du , Matthias Stöck , Susanne Kneitz , Christophe Klopp , Joost Woltering et al.
Nature Ecology & Evolution, 2020, 4 (6), pp.841-852. ⟨10.1038/s41559-020-1166-x⟩
Article dans une revue hal-02640938 v1
Image document

Synteny-Guided Resolution of Gene Trees Clarifies the Functional Impact of Whole-Genome Duplications

Elise Parey , Alexandra Louis , Cédric Cabau , Yann Guiguen , Hugues Roest Crollius et al.
Molecular Biology and Evolution, 2020, 37 (11), pp.3324 - 3337. ⟨10.1093/molbev/msaa149⟩
Article dans une revue hal-03457579 v1
Image document

Siberian sturgeon multi-tissue reference transcriptome database

Christophe Klopp , Cédric Cabau , Gonzalo Greif , André Lasalle , Santiago Di Landro et al.
Database - The journal of Biological Databases and Curation, 2020, 2020, pp.1-8. ⟨10.1093/database/baaa082⟩
Article dans une revue (article de synthèse) hal-03157672 v1
Image document

Genome sequence of the euryhaline Javafish Medaka, Oryzias javanicus: A small aquarium fish model for studies on adaptation to salinity

Yusuke Takehana , Margot Zahm , Cédric Cabau , Christophe Klopp , Céline Roques et al.
G3, 2020, 10 (3), pp.907-915. ⟨10.1534/g3.119.400725⟩
Article dans une revue hal-02624885 v1
Image document

Multi-species annotation of transcriptome and chromatin structure in domesticated animals

Sylvain Foissac , Sarah Djebali , Kylie Munyard , Nathalie Vialaneix , Andrea Rau et al.
BMC Biology, 2019, 17 (1), 25 p. ⟨10.1186/s12915-019-0726-5⟩
Article dans une revue hal-02437599 v1
Image document

Functional genomics of the digestive tract in broilers

Amélie Juanchich , Christelle Hennequet-Antier , Cédric Cabau , Elisabeth Le Bihan-Duval , Michel Jacques M.J. Duclos et al.
BMC Genomics, 2018, 19 (1), ⟨10.1186/s12864-018-5344-z⟩
Article dans une revue hal-02623299 v1
Image document

Compacting and correcting Trinity and Oases RNA-Seq de novo assemblies

Cédric Cabau , Frédéric Escudie , Anis Djari , Yann Guiguen , Julien Bobe et al.
PeerJ, 2017, 5, pp.e2988. ⟨10.7717/peerj.2988⟩
Article dans une revue hal-01506620 v1

Evolution of gene expression after whole-genome duplication: New insights from the spotted gar genome

Jérémy Pasquier , Ingo Braasch , Peter Batzel , Cédric Cabau , Jérôme Montfort et al.
Journal of Experimental Zoology Part B: Molecular and Developmental Evolution, 2017, 328 (7), pp.709 - 721. ⟨10.1002/jez.b.22770⟩
Article dans une revue hal-01788671 v1
Image document

Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database.

Jérémy Pasquier , Cédric Cabau , Thuy Thao Vi Nguyen , Elodie Jouanno , Dany Severac et al.
BMC Genomics, 2016, 17 (1), pp.368. ⟨10.1186/s12864-016-2709-z⟩
Article dans une revue hal-01487023 v1
Image document

Correction : Design and Characterization of a 52K SNP Chip for Goats

Gwenola Tosser-Klopp , Philippe Bardou , Olivier Bouchez , Cédric Cabau , Richard Crooijmans et al.
PLoS ONE, 2016, 11 (3), pp.Non Paginé. ⟨10.1371/journal.pone.0152632⟩
Article dans une revue hal-01602260 v1
Image document

The BioMart community portal: an innovative alternative to large, centralized data repositories

Damian Smedley , Syed Haider , Steffen Durinck , Luca Pandini , Paolo Provero et al.
Nucleic Acids Research, 2015, 43 (W1), pp.W589-W598. ⟨10.1093/nar/gkv350⟩
Article dans une revue hal-01146849 v1

High-throughput sequencing analyses of XX genital ridges lacking [i]FOXL2[/i] reveal [i]DMRT1[/i] up-regulation before [i]SOX9[/i] expression during the sex-reversal process in goats

Maeva El Zaiat , Luc Jouneau , Dominique Thepot Thépot , Christophe Klopp , Aurélie Allais-Bonnet et al.
Biology of Reproduction, 2014, 91 (6), pp.1-14. ⟨10.1095/biolreprod.114.122796⟩
Article dans une revue hal-01194038 v1
Image document

RNAbrowse: RNA-Seq de novo assembly results browser.

Jérôme J. Mariette , Céline Noirot , Ibouniyamine Nabihoudine , Philippe Bardou , Claire Hoede et al.
PLoS ONE, 2014, 9 (5), 7 p. ⟨10.1371/journal.pone.0096821⟩
Article dans une revue hal-02636622 v1
Image document

Design and characterization of a 52K SNP chip for goats

Gwenola Tosser-Klopp , Philippe Bardou , Olivier Bouchez , Cédric Cabau , Richard Crooijmans et al.
PLoS ONE, 2014, 9, online (1), Non paginé. ⟨10.1371/journal.pone.0086227⟩
Article dans une revue hal-01019568 v1
Image document

The rainbow trout genome provides novel insights into evolution after whole-genome duplication in vertebrates.

Camille Berthelot , Frédéric Brunet , Domitille Chalopin , Amélie Juanchich , Maria Bernard et al.
Nature Communications, 2014, 5, pp.1-10. ⟨10.1038/ncomms4657⟩
Article dans une revue hal-01193812 v1
Image document

An overview of gene expression dynamics during early ovarian folliculogenesis: specificity of follicular compartments and bi-directional dialog

Agnès Bonnet , Cédric Cabau , Olivier Bouchez , Julien Sarry , Nathalie Marsaud et al.
BMC Genomics, 2013, 14 (december), pp.1-19. ⟨10.1186/1471-2164-14-904⟩
Article dans une revue hal-01019557 v1
Image document

Induced pluripotent stem cells derived from rabbits exhibit some characteristics of naïve pluripotency

Pierre P. Osteil , Yann Y. Tapponnier , Suzy S. Markossian , Murielle Godet , Barbara B. Panneau et al.
Biology Open, 2013, 2 (6), pp.613-628. ⟨10.1242/bio.20134242⟩
Article dans une revue hal-01000957 v1
Image document

Fine mapping of complex traits in non-model species: using next generation sequencing and advanced intercross lines in Japanese quail

Laure Fresard , Sophie Leroux , Patrice Dehais , Bertrand Servin , Hélène Gilbert et al.
BMC Genomics, 2012, 13, online (october), Non paginé. ⟨10.1186/1471-2164-13-551⟩
Article dans une revue hal-01129669 v1
Image document

Transcriptomic profiling of proteases and antiproteases in the liver of sexually mature hens in relation to vitellogenesis

Marie-Christine Bourin , Joël Gautron , Magali Berges , Christelle Hennequet-Antier , Cédric Cabau et al.
BMC Genomics, 2012, 13, 14 p. ⟨10.1186/1471-2164-13-457⟩
Article dans une revue hal-02644010 v1

An immune-related gene evolved into the master sex-determining gene in Rainbow-trout, Oncorhynchus mykiss

Ayaka Yano , René R. Guyomard , Barbara B. Nicol , Elodie Jouanno , Edwige Quillet et al.
Current Biology, 2012, 22 (15), pp.1423-1428. ⟨10.1016/j.cub.2012.05.045⟩
Article dans une revue hal-01000319 v1
Image document

Insulin immuno-neutralization in fed chickens: effects on liver and mucle transcriptome

Jean Simon , Dragan Milenkovic , Estelle Godet , Cédric Cabau , Anne Collin et al.
Physiological Genomics, 2012, 44 (5), pp.283-292. ⟨10.1152/physiolgenomics.00057.2011⟩
Article dans une revue hal-01129580 v1
Image document

Development and characterisation of an expressed sequence tags (EST)-derived single nucleotide polymorphisms (SNPs) resource in rainbow trout

Mekki Boussaha , René R. Guyomard , Cédric Cabau , Diane D. Esquerre , Edwige Quillet
BMC Genomics, 2012, 13, online (june), Non paginé. ⟨10.1186/1471-2164-13-238⟩
Article dans une revue hal-01000332 v1

Kinetics of gene expression and signaling in bovine cumulus cells throughout IVM in different mediums in relation to oocyte developmental competence, cumulus apoptosis and progesterone secretion

Mohamad Salhab , Lucie Tosca , Cédric Cabau , Pascal Papillier , Christine Perreau et al.
Theriogenology, 2011, 75 (1), pp.90-104. ⟨10.1016/j.theriogenology.2010.07.014⟩
Article dans une revue istex hal-01129418 v1
Image document

PhyleasProg: a user-oriented web server for wide evolutionary analyses

Joël Busset , Cédric Cabau , Camille Meslin , Géraldine Pascal
Nucleic Acids Research, 2011, 39 (Web Server issue), pp.W479-W485. ⟨10.1093/nar/gkr243⟩
Article dans une revue hal-01129520 v1
Image document

Strengthening insights into host responses to mastitis infection in ruminants by combining heterogeneous microarray data sources

Sem Genini , Bouabid Badaoui , Gert Sclep , Stephen Bishop , Dave Waddington et al.
BMC Genomics, 2011, 12 (1), pp.225. ⟨10.1186/1471-2164-12-225⟩
Article dans une revue inserm-00601542 v1
Image document

Gene expression profiling to identify eggshell proteins involved in physical defense of the chicken egg

Vincent Jonchère , Sophie Réhault-Godbert , Christelle Hennequet-Antier , Cédric Cabau , Vonick Sibut et al.
BMC Genomics, 2010, 11 (57), 19 p. ⟨10.1186/1471-2164-11-57⟩
Article dans une revue hal-02662318 v1
Image document

Revealing the dynamics of gene expression during embryonic genome activation and first differentiation in the rabbit embryo with a dedicated array screening

Roger Léandri , Catherine Archilla , Linh Chi Bui , Nathalie N. Peynot , Zichuan Liu et al.
Physiological Genomics, 2009, 36 (2), pp.98-113. ⟨10.1152/physiolgenomics.90310.2008⟩
Article dans une revue hal-02658579 v1
Image document

Identification of transcripts involved in meiosis and follicle formation during ovine ovary development

Adrienne Baillet , Béatrice Mandon-Pepin , Cédric Cabau , Elodie Poumerol , Eric Pailhoux et al.
BMC Genomics, 2008, 9 (436), 12p. ⟨10.1186/1471-2164-9-436⟩
Article dans une revue hal-02658492 v1
Image document

Molecular evidence for a critical period in mural trophoblast development in bovine blastocysts

Severine S. Degrelle , Evelyne E. Campion , Cédric Cabau , François Piumi , Pierrette P. Reinaud et al.
Developmental Biology, 2005, 288 (2), pp.448-460. ⟨10.1016/j.ydbio.2005.09.043⟩
Article dans une revue inserm-02440263 v1

In the QTL region surrounding porcine MHC, gene order is conserved with human genome

Carine Genet , Christine Renard , Cédric Cabau , Claire Rogel Gaillard , Joël Gellin et al.
Mammalian Genome, 2001, 12, pp.246-249
Article dans une revue hal-02673114 v1

IMpRH server: an RH mapping server available on the Web

Denis Milan , R. Hawken , Cédric Cabau , Sophie S. Leroux , Carine Genet et al.
Bioinformatics, 2000, 16 (6), pp.558-559
Article dans une revue hal-02686305 v1
Image document

Exemple d'approche fonctionnelle : la fonction ovarienne dans l'espèce porcine

Gwenola Tosser-Klopp , C. Clouscard-Martinato , Francis Benne , Agnès Bonnet , Cédric Cabau et al.
Productions Animales, 2000, HS 2000, pp.165-167
Article dans une revue hal-02687687 v1
Image document

Targeting the pig imprintome with EM-seq

Jean-Noël Hubert , Nathalie Iannuccelli , Mathilde Perret , Cédric Cabau , Eva Jacomet et al.
2024 Environnemental and Agronomical Genomics Symposium, Feb 2024, Toulouse, France.
Poster de conférence hal-04668372 v1

Single cell transcriptomics reveal that initiation of solid food intake triggers the maturation of caecal lamina propria immune cells in suckling rabbits

Christelle Knudsen , Tania Malonga , Mathilde Rumeau , Emeline Lhuillier , Cédric Cabau et al.
International Congress of Mucosal Immunology (ICMI), Jul 2024, Copenhague, Denmark
Poster de conférence hal-04827627 v1
Image document

A methyl-seq tool to capture genomic imprinted loci

Jean-Noël Hubert , Nathalie Iannuccelli , Cédric Cabau , Eva Jacomet , Yvon Billon et al.
Genomic Imprinting - from Biology to Disease, Mar 2023, Hinxton, United Kingdom
Poster de conférence hal-04198129 v1

Le séquençage de l'ARNm en cellules uniques (scRNA-seq): un outil pour étudier la diversité des cellules CD45+ de la lamina propria du cæcum du lapin

Christelle Knudsen , Frédéric Martins , Cédric Cabau , Alexia Zakaroff-Girard , Elodie Riant et al.
Symposium du club d'immunologie et de vaccinologie vétérinaires, May 2023, Toulouse, France
Poster de conférence hal-04827525 v1
Image document

A bioinformatics pipeline to detect imprinting from methyl-seq trio data

Jean-Noël Hubert , Mathilde Perret , Nathalie Iannuccelli , Eva Jacomet , Cédric Cabau et al.
Genomic Imprinting - from Biology to Disease, Mar 2023, Hinxton, United Kingdom
Poster de conférence hal-04198079 v1

Vers une carte de l'imprintome porcin

Jean-Noël Hubert , Nathalie Iannuccelli , Cédric Cabau , Rémy-Félix Serre , Céline Vandecasteele et al.
Journées Scientifiques du Département de Génétique Animale, Sep 2022, Bordeaux, France
Poster de conférence hal-04099355 v1

Single cell RNA-sequencing: a tool to study the diversity of the lamina propria CD45+ cells in the rabbit caecum

Christelle Knudsen , Frédéric Martins , Cédric Cabau , Alexia Zakaroff-Girard , Elodie Riant et al.
20th International Congress of Mucosal Immunology (ICMI2022), Jul 2022, Seattle, United States
Poster de conférence hal-04054303 v1

Relationship between feed efficiency and functionality of the digestive tract in broilers : a transcriptomic analysis

Amélie Juanchich , Christelle Hennequet-Antier , Cédric Cabau , Elisabeth Duval , Michel Jacques M.J. Duclos et al.
European Symposium on Poultry Nutrition, Jun 2019, Gdansk, Poland. 2019
Poster de conférence hal-02788677 v1

Integrative analyses of chromosome conformation, chromatin accessibility and gene expression in human and livestock genomes

Camille Mestre , Sarah Djebali Quelen , Thomas Faraut , Nathalie Vialaneix , Andrea Rau et al.
European Conference on Computational Biology (ECCB 2018), Sep 2018, Athènes, Greece. , 2018
Poster de conférence hal-02784857 v1

Integrative and differential analysis of transcriptomes and chromatin accessibility regions reveals regulatory mechanisms involved in pig immune and metabolic functions

Sarah Djebali Quelen , Kylie Munyard , Nathalie Villa-Vialaneix , Cédric Cabau , Andrea Rau et al.
36th International Society for Animal Genetics Conference, Jul 2017, Dublin, Ireland. 2017, ISAG 2017 - Genomes to Phenomes - Abstract Book
Poster de conférence hal-01603033 v1
Image document

Long-non coding RNAs repertoires in liver and two T lymphocyte cell types in four livestock species

Kévin Muret , Sarah Djebali Quelen , Thomas Derrien , Cédric Cabau , Christophe Klopp et al.
36. Conference of the International Society for Animal Genetics (ISAG), Jul 2017, Dublin, Ireland. 2017, ISAG 2017 - Genomes to Phenomes - Abstract Book
Poster de conférence hal-01621915 v1
Image document

Profiling the landscape of transcription, chromatin accessibility and chromosome conformation of cattle, pig, chicken and goat genomes [FAANG pilot project]

Sylvain Foissac , Sarah Djebali Quelen , Hervé Acloque , Philippe Bardou , Fany Blanc et al.
36th International Society for Animal Genetics Conference, Jul 2017, Dublin, Ireland. 2017, ISAG 2017 - Genomes to Phenomes - Abstract Book
Poster de conférence hal-01608449 v1
Image document

Functional genomics of the digestive function in broilers

Amélie Juanchich , Christelle Hennequet-Antier , Cédric Cabau , Elisabeth Duval , Michel Jacques M.J. Duclos et al.
10th European Symposium on Poultry Genetics, Jun 2017, Saint-Malo, France. 2017, Proceedings of the 10th european Symposoium on Poultry Genetics
Poster de conférence hal-01606214 v1

Early response of epithelial cells to<em> Eimeria tenella</em> infection

Françoise Bussière , Yan Jaszczyszyn , Cédric Cabau , Christelle Hennequet , Alisson Niepceron et al.
11. International Coccidiosis Conference, Sep 2014, Dresden, Germany. 2014
Poster de conférence hal-02739154 v1

Réponse précoce de l'hôte à l'infection par <em>Eimeria tenella</em>

Françoise Bussière , Yan Jaszczyszyn , Cédric Cabau , Christelle Hennequet , Patricia Berthon et al.
Journées d'Animation Scientifique du Département Santé Animale, Oct 2013, Cap d'Agde, France. 2013, Santé animale et santé publique
Poster de conférence hal-02748207 v1

The PhyloFish project: an RNA-Seq approach coupled to high throughput phylogenomic analyses to study whole genome duplication impact on teleosts

Jérémy Pasquier , Cédric Cabau , P. Gouret , L. Journot , Christophe Klopp et al.
17. Evolutionary Biology Meeting at Marseilles, Sep 2013, Marseille, France. 2013, 17th Evolutionary Biology Meeting at Marseilles
Poster de conférence hal-02745585 v1

Early response of epithelial cells to Eimeria tenella infection

Françoise I. Bussière , Yan Jaszczyszyn , Cédric Cabau , Christelle Hennequet-Antier , Fabien Brossier
ApiCOWplexa 2012 International Meeting on Apicomplexan Parasites in Farm Animals, Oct 2012, Lisbonne, Portugal. Sociedade Portuguesa de Ciências Veterinárias, 176 p., 2012, Proceedings Apicomplexa in farm animals
Poster de conférence hal-01416827 v1

Characterization of a conserved master sex-determining gene in salmonids

Yann Guiguen , Ayaka Yano , Barbara Nicol , Elodie Jouanno , René Guyomard et al.
1. International Conference on Integrative Salmonid Biology ICISB, Jun 2012, Oslo, Norway. 2012, ICISB 2012
Poster de conférence hal-01267802 v1

Identification of genes expressed during sheep ovarian development

Adrienne Baillet , Béatrice Mandon-Pepin , Cédric Cabau , Elodie Poumerol , Eric Pailhoux et al.
16. International Congress on Animal Reproduction (ICAR), Jul 2008, Budapest, Hungary. Reproduction in Domestic Animals, 43 (Suppl. 3), pp.145-145, 2008, ⟨10.1111/j.1439-0531.2008.01234.x⟩
Poster de conférence istex hal-02751476 v1

Chicken and pig normalised multi-tissue cDNA libraries

Agnès Bonnet , Frédéric Herault , Gwenola Tosser-Klopp , Valérie Metzinger-Le Meuth , F. Benne et al.
XXVIII International Conference on Animal Genetics, Aug 2002, Göttingen, Germany. pp.38, 2002, Proceedings 2002
Poster de conférence hal-02649319 v1

Localisation de 10 genes sur la carte génétique de la poule

Frederique Pitel , Florence Plisson-Petit , Cédric Cabau , Sandrine Lagarrigue , Mohammed Taouis et al.
Colloque annuel S.F.G. - Génomique Comparative, Apr 1999, Toulouse, France. 1 p., 1999
Poster de conférence hal-02835659 v1
Image document

La transcriptomique en cellule unique révèle les processus de maturation induits dans chaque type de cellule épithéliale intestinale lors de l'introduction de l'alimentation solide

Tania Malonga , Christelle Knudsen , Emeline Lhuillier , Patrick Aymard , Elodie Riant et al.
CECED 2024, Club des Cellules Epithéliales Digestives, Mar 2024, Montpellier, France. pp.P12
Communication dans un congrès hal-04527178 v1

Targeting the pig imprintome

Jean-Noël Hubert , Nathalie Iannuccelli , Cédric Cabau , Rémy-Félix Serre , Céline Vandecasteele et al.
Advances in Genome Biology and Technology Agriculture (AGBT-Ag), Apr 2022, San Diego, United States
Communication dans un congrès hal-04099166 v1

Heterologous hybridization using the human exome - a molecular tool to target and identify major genes

Nathalie Iannuccelli , Cédric Cabau , Julien Sarry , Olivier Bouchez , Yvon Billon et al.
World Rabbit Congress, Nov 2021, Nantes, France
Communication dans un congrès hal-03404641 v1

Transcriptome de la complémentarité des fonctions entre le gésier et la jonction gastroduodénale chez le poulet de chair

Amélie Juanchich , Christelle Hennequet-Antier , Cédric Cabau , Elisabeth Le Bihan-Duval , Michel Jacques M.J. Duclos et al.
13. Journées de la Recherche Avicole et Palmipèdes à Foie Gras, Mar 2019, Tours, France
Communication dans un congrès hal-03614963 v1

Transcriptome de la complémentarité des fonctions entre le gésier et la jonction gastro-duodénale chez le poulet de chair

Amélie Juanchich , Christelle Hennequet-Antier , Cédric Cabau , Elisabeth Duval , Michel Jacques M.J. Duclos et al.
13. Journées de la Recherche Avicole et Palmipèdes à Foie Gras, Mar 2019, Tours, France
Communication dans un congrès hal-02735696 v1
Image document

Temporal Expression of Hen Uterine transcripts at key step of shell mineralization

Joël Gautron , Aurélien Brionne , Olivier Bouchez , Cédric Cabau , Christelle Hennequet-Antier et al.
14th International Symposium on Biomineralization, Oct 2017, Tsukuba, Japan
Communication dans un congrès hal-02733493 v1

Temporal expression of hen uterine transcripts at key steps of shell mineralization

Joël Gautron , Aurélien Brionne , Olivier Bouchez , Cédric Cabau , Christelle Hennequet-Antier et al.
XVII European Symposium on the Quality of Eggs and Egg Products and XXIII European Symposium on the Quality of Poultry Meat ‘EggMeat 2017, Sep 2017, Edinburgh, United Kingdom
Communication dans un congrès hal-02733489 v1

Identification de gènes impliqués dans le contrôle des fonctions digestives chez le poulet de chair

Amélie Juanchich , Christelle Hennequet-Antier , Cédric Cabau , Elisabeth Duval , Michel Jacques M.J. Duclos et al.
12. Journées de la Recherche Avicole et des Palmipèdes à Foie Gras, Apr 2017, Tours, France. 1124 p
Communication dans un congrès hal-01605115 v1

Evolution of gene expression in fish: The PhyloFish database

Jérémy Pasquier , Cédric Cabau , Thuy Thao Vi Nguyen , Elodie Dupin-De-Beyssat , Dany Severac et al.
8. Aquatic Models of Human Disease Conference, Jan 2017, Birmingham, United States
Communication dans un congrès hal-01607208 v1

Oocytomics: combining transcriptomics and proteomics to understand post-transcriptional regulation in bovine oocytes

Rozenn Dalbies-Tran , Christelle Hennequet-Antier , Cédric Cabau , Leslie Angulo , Sylvain Auclair et al.
1. International Symposium of Microgenomics, Institut National de Recherche Agronomique (INRA). UMR Génétique Animale et Biologie Intégrative (1313)., May 2014, Paris, France
Communication dans un congrès hal-02740352 v1
Image document

DMRT1 turns on testicular differentiation during XX sex-reversal in the goat

Maeva El Zaiat , Luc Jouneau , Dominique Thepot Thépot , Christophe Klopp , Aurélie Allais-Bonnet et al.
18. European Testis Workshop, May 2014, Elsinore, Denmark. 1 p
Communication dans un congrès hal-01193822 v1
Image document

Integration of European eel transcriptome into the PHYLOFISH project, a high throughput phylogenomic analysis designed to study teleost gene evolution after whole genome duplication

Jérémy Pasquier , Cédric Cabau , P. Gouret , L. Journot , Christophe Klopp et al.
Eel genome symposium 2014, Jan 2014, Leiden, Netherlands
Communication dans un congrès hal-02743789 v1

New advances on egg proteins and their potential for food and non food uses

Joël Gautron , Sophie Réhault-Godbert , Aurélien Brionne , Cédric Cabau , Nicolas Guyot et al.
104th AOCS Annual Meeting and Expo, Apr 2013, Montreal, Canada
Communication dans un congrès hal-02808179 v1
Image document

MilkChEST, an integrative approach of the secretion pathways in the mammary epithelial cell: molecular dissection of milk fat adaptability

Christine Leroux , Christian Beauvallet , Laurence Bernard , Claudia Bevilacqua , Frédéric Bouvier et al.
European Regional Conference On Goats, Jun 2013, Tromsø, Norway
Communication dans un congrès hal-01194090 v1

Transcriptome diversity at multi- and single-cell levels in rabbit pluripotent stem cells

Yann Tapponnier , Pierre Osteil , Barbara Panneau , Luc Jouneau , Cédric Cabau et al.
11. Annual Meeting International Society for Stem Cell Research (ISSCR), International Society of Stem Cell Research (ISSCR). INT., Jun 2013, Boston, United States. 1 p
Communication dans un congrès hal-01198231 v1

An immune-related gene evolved into a conserved master sex-determining gene in the salmonid fish family

Ayaka Yano , René Guyomard , Barbara Nicol , Elodie Jouanno , Edwige Quillet et al.
Conférences Jacques Monod: “Avancées récentes sur l'évolution du sexe et des systèmes génétiques", May 2013, Roscoff, France
Communication dans un congrès hal-01194065 v1

Involvment of [i]DMRT1[/i] in XX sex-reversed polled goats

Maeva Elzaiat , Dominique Thepot Thépot , Luc Jouneau , Aurélie Allais-Bonnet , Christophe Klopp et al.
6. International Symposium on the Biology of Vertebrate Sex Determination, Vertebrate-biosex. USA., Apr 2012, Kona, Hawai, United States. 1 p
Communication dans un congrès hal-01019618 v1

New insights into sex differentiation and determination for a better sex control in salmonids

Ayaka Yano , Barbara B. Nicol , René R. Guyomard , Elodie Jouanno , Edwige Quillet et al.
Aqua 2012, European Aquaculture Society (EAS). BEL., Sep 2012, Prague, Czech Republic
Communication dans un congrès hal-02744513 v1

GENIDOV: Gene network involved in ovarian development in goat and mouse

Eric Pailhoux , Maëlle Pannetier , Dominique Thepot Thépot , Geneviève Jolivet , Ikrame Naciri et al.
9. Colloque Agenae / ANR, Colloque Génomique Animale et Microbienne, AGENAE - Analyse du Génome des Animaux d'Elevage (AGENAE). FRA., Mar 2012, La Rochelle, France. 1 p
Communication dans un congrès hal-01193796 v1

Activités biologiques du jaune d'oeuf : exemple du système protéases/antiprotéases

Sophie Réhault-Godbert , Marie-Christine Bourin , Joël Gautron , Magali Berges , Christelle Hennequet-Antier et al.
Journée Technique Avicole 2012 du SYSAAF, Syndicat des Sélectionneurs Avicoles et Aquacoles Français (SYSAAF). FRA., Mar 2012, Tours, France
Communication dans un congrès hal-02809620 v1

Goat genome assembly, availability of an international 50K SNP chip and RH panel: an update of the international goat genome consortium projects

Gwenola Tosser-Klopp , Cédric Cabau , Andre Eggen , Thomas Faraut , Henri Heuven et al.
20. Conference of the Plant & Animal Genome, Plant & Animal Genome (PAG). USA., Jan 2012, San Diego, United States. 28 diapositives
Communication dans un congrès hal-01019243 v1

New insights on sex determination in salmonids

Ayaka Yano , René Guyomard , Elodie Jouanno , Barbara Nicol , Edwige Quillet et al.
6. International Symposium on The Biology of Vertebrate Sex Determination, Apr 2012, Kona (Hawaii), United States. pp.45
Communication dans un congrès hal-01019433 v1

Caractérisation d'un gène déterminant majeur du sexe conservé chez les salmonidés

Ayaka Yano , René R. Guyomard , Elodie Jouanno , Barbara B. Nicol , Christophe Klopp et al.
3. Journées de la Recherche Filière Piscicole, Jul 2012, Paris, France. pp.109
Communication dans un congrès hal-01000327 v1

New insights in egg proteins applying cDNA microarrays to hen oviduct and liver and extensive proteomic data mining

Joël Gautron , Aurélien Brionne , Marie-Christine Bourin , Christelle Hennequet-Antier , Cédric Cabau et al.
5. Combined Workshop on Fundamental Physiology and Perinatal Development in Poultry, Aug 2011, Wageningen, Netherlands
Communication dans un congrès hal-02802514 v1
Image document

Towards a high density SNP International Goat Chip

Gwenola Tosser-Klopp , Abdullah Johari Jiken , Philippe Bardou , Cédric Cabau , Patrice Dehais et al.
Plant and Animal Genome, Jan 2011, San Diégo, United States
Communication dans un congrès hal-01194170 v1

New insights in egg white proteins using cDNA microarrays and extensive proteomic data mining

Joël Gautron , Aurélien Brionne , Christelle Hennequet-Antier , Cédric Cabau , Nicolas Guyot et al.
14. European Symposium on the Quality of Eggs and Egg Products, Sep 2011, Leipzig, Germany
Communication dans un congrès hal-02747495 v1

Identification of transcripts involved in meiosis and follicle formation during ovine ovary development

Béatrice Mandon-Pepin , Adrienne Baillet , Cédric Cabau , Elodie Poumerol , Eric Pailhoux et al.
6. Workshop on Mammalian Folliculogenesis and oogenesis : from basic science to the clinic, Oct 2009, Potsdam, Germany. p:18
Communication dans un congrès hal-02819495 v1

Screening of novel uterine proteins involved in eggshell formation using cDNA microarrays

Vincent Jonchère , Sophie Réhault-Godbert , L. Cogburn , Christelle Hennequet-Antier , Cédric Cabau et al.
19. European Symposium on the Quality of Poultry Meat. 13. European Symposium on the Quality of Eggs and Eggs Products., Jun 2009, Turku, Finland
Communication dans un congrès hal-02751521 v1

Identification de nouveaux genes de la coquille potentiellement impliqués dans les défenses naturelles de l'oeuf

Vincent Jonchère , Sophie Réhault-Godbert , Christelle Hennequet , Cédric Cabau , Vonick Sibut et al.
8. Journées de la Recherche Avicole, Mar 2009, Saint-Malo, France
Communication dans un congrès hal-02751014 v1

Identification par une approche transcriptomique d'un ensemble de protéines potentiellement impliquées dans la formation de la coquille de l'oeuf de poule

Vincent Jonchère , Yves Y. Nys , L. Cogburn , Christelle Hennequet-Antier , Cédric Cabau et al.
11. Journées Françaises de Biologie des Tissus Minéralisés, Mar 2009, Nice, France
Communication dans un congrès hal-02756159 v1

Vers l'obtention d'une carte physique chez la truite Arc-en-ciel.

Carine Genet , Patrice Dehais , Cédric Cabau , Y. Palti
Journées Scientifiques, Département de Génétique Animale, Apr 2008, Lacanau, France
Communication dans un congrès hal-02752590 v1

Use of high-throughput methods to identify novel egg components

Joël Gautron , Vincent Jonchère , Christelle Hennequet-Antier , Cédric Cabau , Valérie Labas et al.
25. Congrès de la Société d'Electrophorèse et d'Analyse Protéomique, Oct 2008, Tours, France
Communication dans un congrès hal-02751763 v1

Rabbit as a model for embryo development

Véronique Duranthon , Roger Léandri , Catherine Archilla , Cédric Vignal , Cédric Cabau et al.
2. International Meeting on Rabbit Biotechnology, Jun 2007, Jouy en Josas, France. 1 p
Communication dans un congrès hal-02823822 v1

A pig normalised multi-tissue cDNA library

Agnès Bonnet , Gwenola Tosser-Klopp , Francis Benne , Cédric Cabau , S. Villeger et al.
7th World Congress on Genetics Applied to Livestock Production, 2002, Montpellier, pp.Inconnu
Communication dans un congrès hal-02832597 v1

High resolution mapping of 148 type I markers in pigs

Cédric Cabau , Sophie S. Leroux , Yvette Lahbib Mansais , Gwenola Tosser-Klopp , Denis Milan et al.
27. International Conference on Animal Genetics, Jul 2000, Minnesota, United States
Communication dans un congrès hal-02769097 v1

Exemple d'approche fonctionnelle : la fonction ovarienne du porc.

Gwenola Tosser-Klopp , Catherine Clouscard-Martinato , Francis Benne , Agnès Bonnet , Cédric Cabau et al.
Séminaire, La génétique moléculaire et ses applications, Sep 1999, Cap d Agde, France
Communication dans un congrès hal-02766107 v1

A methyl-seq tool to capture genomic imprinted loci

Jean-Noël Hubert , Nathalie Iannuccelli , Cédric Cabau , Eva Jacomet , Yvon Billon et al.
2023
Pré-publication, Document de travail hal-04099373 v1
Image document

Synteny-guided resolution of gene trees clarifies the functional impact of whole genome duplications

Elise Parey , Alexandra Louis , Cédric Cabau , Yann Guiguen , Hugues Roest-Crollius et al.
2020
Pré-publication, Document de travail (preprint/prepublication) hal-02791038 v1
Image document

Sex chromosome and sex locus characterization in the goldfish, Carassius auratus

Ming Wen , Romain Feron , Qiaowei Pan , Justine Guguin , Elodie Jouanno et al.
2019
Pré-publication, Document de travail (preprint/prepublication) hal-02790844 v1
Image document

Characterization of a Y-specific duplication/insertion of the anti-Mullerian hormone type II receptor gene based on a chromosome-scale genome assembly of yellow perch, Perca flavescens

Romain Feron , Margot Zahm , Cédric Cabau , Christophe Klopp , Céline Roques et al.
2019
Pré-publication, Document de travail (preprint/prepublication) hal-02790966 v1
Image document

Genome sequence of the euryhaline Javafish medaka, Oryzias javanicus: a small aquarium fish model for studies on adaptation to salinity

Yusuke Takehana , Margot Zahm , Cédric Cabau , Christophe Klopp , Céline Roques et al.
2019
Pré-publication, Document de travail (preprint/prepublication) hal-02790965 v1
Image document

Livestock genome annotation: transcriptome and chromatin structure profiling in cattle, goat, chicken and pig

Sylvain Foissac , Sarah Djebali , Kylie Munyard , Nathalie Vialaneix , Andrea Rau et al.
2018
Pré-publication, Document de travail (preprint/prepublication) hal-02791029 v1
Image document

Evolution of gene expression after whole-genome duplication: new insights from the spotted gar genome

Jérémy Pasquier , Ingo Braasch , Peter Batzel , Cédric Cabau , Jérôme Montfort et al.
2017
Pré-publication, Document de travail (preprint/prepublication) hal-02791027 v1

Molecules involved in chemical defence of the chicken egg

Sophie Réhault-Godbert , Virginie Herve-Grepinet , Joël Gautron , Cédric Cabau , Yves Y. Nys et al.
Improving the safety and quality of eggs and egg products. Vol.1 Egg chemistry, production and consumption, 213, Woodhead Publishing Ltd, 2011, Woodhead Publishing Series in Food Science, Technology and Nutrition, 978-1-84569-754-9
Chapitre d'ouvrage hal-02805911 v1