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Célia Michotey

41
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Publications

Survival and growth of 711 forest tree taxa in eight French arbore-tums from three different climate regions

Catherine Ducatillion , Thierry Lamant , Richard Bellanger , Valentin Bouttier , Jean-Charles Bastien et al.
Annals of Sylviculture Research, 2022, 47 (1), pp.30-38. ⟨10.12899/asr-2325⟩
Journal articles hal-03858907v1
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The GenTree Leaf Collection: Inter‐ and intraspecific leaf variation in seven forest tree species in Europe

Raquel Benavides , Bárbara Carvalho , Cristina Bastias , David López‐quiroga , Antonio Mas et al.
Global Ecology and Biogeography, 2021, 30 (3), pp.590-597. ⟨10.1111/geb.13239⟩
Journal articles hal-03282266v1
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The GenTree Platform: growth traits and tree-level environmental data in 12 European forest tree species

Lars Opgenoorth , B. Dauphin , Raquel Benavides , Katrin Heer , Paraskevi Alizoti et al.
GigaScience, 2021, 10 (3), pp.giab010. ⟨10.1093/gigascience/giab010⟩
Journal articles hal-03282821v1
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Enabling reusability of plant phenomic datasets with MIAPPE 1.1

Evangelia Papoutsoglou , Daniel Faria , Daniel Arend , Elizabeth Arnaud , Ioannis Athanasiadis et al.
New Phytologist, 2020, 227 (1), pp.260-273. ⟨10.1111/nph.16544⟩
Journal articles hal-02949641v1

Author Correction: The GenTree Dendroecological Collection, tree-ring and wood density data from seven tree species across Europe

Elisabet Martínez-Sancho , Lenka Slámová , Sandro Morganti , Claudio Grefen , Barbara Carvalho et al.
Scientific Data , 2020, 7 (1), ⟨10.1038/s41597-020-0447-1⟩
Journal articles hal-03282224v1
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Applying FAIR principles to plant phenotypic data management in GnpIS

Cyril Pommier , Célia Michotey , Guillaume Cornut , Pierre Roumet , Eric Duchêne et al.
Plant Phenomics, 2019, 2019, pp.1-15. ⟨10.34133/2019/1671403⟩
Journal articles hal-02624031v1
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Linking the International Wheat Genome Sequencing Consortium bread wheat reference genome sequence to wheat genetic and phenomic data

Michael Alaux , Jane Rogers , Thomas Letellier , Raphaël Flores , Françoise Alfama et al.
Genome Biology, 2018, 19 (1), pp.905-911. ⟨10.1186/s13059-018-1491-4⟩
Journal articles hal-02278879v1
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Oak genome reveals facets of long lifespan

Christophe Plomion , Jean-Marc Aury , Joelle Amselem , Thibault Leroy , Florent Murat et al.
Nature Plants, 2018, 4 (7), pp.440-452. ⟨10.1038/s41477-018-0172-3⟩
Journal articles hal-01820559v1
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YOC, A new strategy for pairwise alignment of collinear genomes

Raluca Uricaru , Célia Michotey , Hélène Chiapello , Eric Rivals
BMC Bioinformatics, 2015, 16 (1), pp.16:111. ⟨10.1186/s12859-015-0530-3⟩
Journal articles lirmm-01170968v1

Decoding the oak genome: public release of sequence data, assembly, annotation and publication strategies.

Christophe Plomion , Jean-Marc Aury , Joëlle Amselem , Tina Alaeitabar , Valérie Barbe et al.
Molecular Ecology Resources, 2015, 16 (1), pp.254-265. ⟨10.1111/1755-0998.12425⟩
Journal articles hal-01579667v1
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GnpIS: an information system to integrate genetic and genomic data from plants and fungi

Delphine D. Steinbach , Michael M. Alaux , Joelle J. Amselem , Nathalie Choisne , Sophie S. Durand et al.
Database - The journal of Biological Databases and Curation, 2013, 2013, pp.1-9. ⟨10.1093/database/bat058⟩
Journal articles hal-02648084v1
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Developing infrastructures for FAIR data in plant biology

Cyril Pommier , Guillaume Cornut , Michael Alaux , Windpouire Esther Dzale Yeumo , Raphaël Flores et al.
Gatersleben Research Conference - Applied Bioinformatics for crops (GRC2019), IPK, Mar 2019, Gatersleben, Germany
Conference papers hal-03316569v1
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An integrated information system dedicated to oak genomics and genetics

Joëlle Amselem , Nicolas Francillonne , Célia Michotey , Thomas Letellier , Jean-Marc Aury et al.
PAG XXVI Plant and Animal Genome Conference, Jan 2018, San Diego, United States. pp.27 slides
Conference papers hal-01839185v1
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Data standards for plant phenotyping: MIAPPE and its implementations

Cyril Pommier , Guillaume Cornut , Thomas Letellier , Célia Michotey , Pascal Neveu et al.
26. Plant and Animal Genome Conference (PAG XXVI), Jan 2018, San Diego, Californie, United States. pp.24 slides
Conference papers hal-02789754v1

Developing grapevine FAIR Data

Cyril Pommier , Eric Duchêne , Thierry Lacombe , Timothée Flutre , Michael Alaux et al.
PAG Conference 2018, Jan 2018, San Diego, United States
Conference papers hal-02738117v1
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The IWGSC Data repository and wheat data resources hosted at URGI: Overview and perspectives

Michael Alaux , Jane Rogers , Thomas Letellier , Raphaël Flores , Cyril Pommier et al.
PAG XXVI - Plant and Animal Genome Conference, Jan 2018, San Diego, United States. pp.32 slides
Conference papers hal-02788401v1
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Improving the « FAIRness » of Inra’s data for plant biology and breeding

Michael Alaux , Cyril Pommier , Esther Dzale Yeumo , Sophie Durand , Raphaël Flores et al.
PAG XXVI - Plant and Animal Genome Conference, Jan 2018, San Diego, United States. pp.14 slides
Conference papers hal-02790227v1

The IWGSC Reference genome browser, data mining and beyond

Michael Alaux , Thomas Letellier , Françoise Alfama Depauw , Jane Rogers , Frédéric Choulet et al.
PAG XXV - Plant and Animal Genome Conference, Jan 2017, San Diego, United States
Conference papers hal-02788141v1
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Findable, Accessible, Interoperable and Reusable data linked to genetic resources for plant biology and breeding at INRA

Sophie Durand , Windpouire Esther Dzale Yeumo , Cyril Pommier , Michael Alaux , Guillaume Cornut et al.
4. International Symposium on Genomics of Plant Genetic Resources, Sep 2017, Giessen, Germany. pp.17 slides
Conference papers hal-02791168v1
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Forest tree GnpIS: an information system dedicated to forest tree genetics, genomics and phenomics

Célia Michotey , Christel Anger , François Ehrenmann , Odile Rogier , Véronique V. Jorge et al.
IUFRO Genomics and Forest Tree Genetics, May 2016, Arcachon, France
Conference papers hal-02740283v1

IWGSC Sequence Repository: Moving towards tools to facilitate data integration for the reference sequence of wheat

Michael Alaux , Thomas Letellier , Françoise Alfama-Depauw , Véronique Jamilloux , Jane Rogers et al.
PAG XXIV - Plant and Animal Genome Conference, Jan 2016, San Diego, United States
Conference papers hal-01266518v1
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Contribution to a European roadmap for data standardisation in Plant Science at URGI-INRA

Cyril Pommier , Michael M. Alaux , Windpouire Esther Dzale Yeumo , Guillaume Cornut , Sophie S. Durand et al.
Plant Biology Europe EPSO / FESBP 2016 Congress, Jun 2016, Prague, Czech Republic
Conference papers hal-02794139v1

GnpIS-Asso : A Generic Database for Managing and Exploiting Plant Genetic Association Studies Results Using High Throughput Genotyping and Phenotyping Data

Delphine Steinbach , Guillaume Merceron , Célia Michotey , Raphaël-Gauthier Flores , Nacer Mohellibi et al.
23. Plant and Animal Genome, Jan 2015, San Diego, United States
Conference papers hal-01174322v1
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Phenotypic Data Exchange and Processing Using ISA-Tab Standard: transPLANT Project Use Case with GnpIS.Ephesis and Bii

Cyril Pommier , Pawel Krajewski , Thomas Letellier , Hanna Cwiek , Célia Michotey et al.
23. Plant and Animal Genome (PAG), Jan 2015, San Diego, United States
Conference papers hal-02739236v1
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Grape@GnpIS: Overview of the GnpIS grape genomics and genetics integrative resource

Nacer Mohellibi , Nathalie Choisne , Aminah A. Keliet , Daphné Verdelet , Françoise Alfama et al.
23. Plant and Animal Genome (PAG XXIII), Jan 2015, San Diego, Californie, United States. pp.24 slides
Conference papers hal-02741780v1

Information system for phenotype data: trait, trials and genotypes identification and integration

Cyril Pommier , Michael M. Alaux , Sophie S. Durand , Raphaël-Gauthier R.-G. Flores , Aminah A. Keliet et al.
22. Conference Plant and Animal Genome, European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI). GBR., Jan 2014, San Diego, United States
Conference papers hal-02795958v1

A generic tool for managing and exploiting genetic association studies results using high throughput genotyping and phenotyping

Célia Michotey , Frédéric Sapet , Pierre Dubreuil , Jacques Le Gouis , Mathilde Causse et al.
Plant Genomics Seminar 2012, Apr 2012, Pont-Royal en Provence, France
Conference papers hal-01268379v1

Web services for microbial genome annotation using data integration

Célia Michotey , Ludovic Legrand , Helene H. Chiapello , Valentin Loux , Annie A. Gendrault-Jacquemard et al.
JOBIM 2010 : Journées Ouvertes en Biologie, Informatique et Mathématiques, Sep 2010, Montpellier, France
Conference papers hal-02752226v1
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Improved Sensitivity And Reliability Of Anchor Based Genome Alignment

Raluca Uricaru , Célia Michotey , Laurent Noé , Hélène Chiapello , Eric Rivals et al.
JOBIM'09 : Journées Ouvertes en Biologie, Informatique et Mathématiques, Jun 2009, Nantes, France. pp.31-36
Conference papers lirmm-00407215v1
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Improved sensitivity and reliability of anchor based genome alignment

Raluca Uricaru , Célia Michotey , Laurent Noé , Helene H. Chiapello , Eric Rivals et al.
JOBIM - Journées Ouvertes en Biologie Informatique Mathématiques2009 - Nantes :, Jun 2009, Nantes, France. 259 p
Conference papers hal-02751358v1
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Research Data Management Toolkit (RDMkit): guidelines for plant phenotyping data management and sharing

Erwan Le Floch , Anne-Françoise Adam-Blondon , Isabelle Alic , Bert Droesbeke , Stijn Dhondt et al.
7th International Plant Phenotyping Symposium, Sep 2022, Wageningen, Netherlands. , 2022, ⟨10.5281/zenodo.7148792⟩
Conference poster hal-03800325v1
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Findable, Accessible, Interoperable and Reusable data linked to genetic resources for plant biology and breeding at INRA

Sophie Durand , Esther Dzale Yeumo , Cyril Pommier , Michaël Alaux , Guillaume Cornut et al.
Crop diversification in a changing world : Mobilizing the green gold of plant genetic resources, May 2017, Montpellier, France. , 2017, EUCARPIA Genetic Resources 2017
Conference poster hal-01606277v1

Detection of WUE positional candidate genes by combining QTL maps and BAC sequencing with the annotated oak genome sequence

Nicolas Francillonne , Catherine Bodenes-Brezard Bodénès , François Ehrenmann , Célia Michotey , Antoine Kremer et al.
Genomics and Forest Tree Genetics Conference, May 2016, Arcachon, France. , 134 p., 2016, Book of abstracts
Conference poster hal-02741266v1
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A computational architecture designed for genome annotation: oak genome sequencing project as a use case

Nicolas Francillonne , Tina Alaeitabar , Françoise Alfama-Depauw , Loïc Couderc , Claire Guerche et al.
JOBIM 2015 - Journées Ouvertes Biologie Informatique Mathématiques, Jul 2015, Clermont-ferrand, France. 2015
Conference poster hal-01246649v1
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Forest tree GnpIS: an information system dedicated to forest tree genetics, genomics and phenomics

Célia Michotey , Christel Anger , François Ehrenmann , Odile Rogier , Véronique V. Jorge et al.
35. New Phytologist Symposium, Jun 2015, Boston, United States. 2015
Conference poster hal-02795537v1

GnpSeq NGS: a new tool to manage NGS data in URGI's information system (GnpIS)

Célia Michotey , Nacer Mohellibi , Hadi Quesneville , Delphine Steinbach
JOBIM 2012 : Journées Ouvertes en Biologie, Informatique et Mathématiques, 2012, 2012
Conference poster hal-02807359v1

Plant Science Data Integration, from Building Community Standards to Defining a Consistent Data Lifecycle

Cyril Pommier , Frederik Coppens , Hanna Ćwiek-Kupczyńska , Daniel Faria , Sebastian Beier et al.
Towards Responsible Plant Data Linkage: Data Challenges for Agricultural Research and Development, Springer International Publishing, pp.149-160, 2023, ⟨10.1007/978-3-031-13276-6_8⟩
Book sections hal-03896793v1
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Mining plant genomic and genetic data using the GnpIS information system

Anne-Francoise Adam-Blondon , Michael Alaux , Sophie Durand , Thomas Letellier , Guillaume Merceron et al.
Aalt D.J van Dijk. Plant Genomics Databases. Methods and Protocols, 1533, Springer, 2017, Methods in Molecular Biology, 978-1-4939-6658-5. ⟨10.1007/978-1-4939-6658-5_5⟩
Book sections hal-03206731v1