Célia Michotey
- IR BioInfOmics
- Institut Français de Bioinformatique (IFB-core)
- Université Paris-Saclay
- Ressources génomique-info (URGI)
Présentation
Publications
Publications
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Genetic Resources Data Exchange and Findability for the French Plant Genebanks Using BrAPIPAG 32, Jan 2025, San Diego (CA), United States |
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Les services de FAIRification des données à l’URGI : cas d’utilisation par des projets/consortium nationaux et internationauxRéunion annuelle de l'IFB, Dec 2025, Paris, France |
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Developing infrastructures for FAIR data in plant biologyGatersleben Research Conference - Applied Bioinformatics for crops (GRC2019), IPK, Mar 2019, Gatersleben, Germany |
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Data standards for plant phenotyping: MIAPPE and its implementations26. Plant and Animal Genome Conference (PAG XXVI), Jan 2018, San Diego, United States. pp.24 slides |
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An integrated information system dedicated to oak genomics and geneticsPAG XXVI Plant and Animal Genome Conference, Jan 2018, San Diego, United States. pp.27 slides |
Developing grapevine FAIR DataPAG Conference 2018, Jan 2018, San Diego, United States |
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Improving the « FAIRness » of Inra’s data for plant biology and breedingPAG XXVI - Plant and Animal Genome Conference, Jan 2018, San Diego, United States. pp.14 slides |
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The IWGSC Data repository and wheat data resources hosted at URGI: Overview and perspectivesPAG XXVI - Plant and Animal Genome Conference, Jan 2018, San Diego, United States. pp.32 slides |
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Findable, Accessible, Interoperable and Reusable data linked to genetic resources for plant biology and breeding at INRA4. International Symposium on Genomics of Plant Genetic Resources, Sep 2017, Giessen, Germany. pp.17 slides |
The IWGSC Reference genome browser, data mining and beyondPAG XXV - Plant and Animal Genome Conference, Jan 2017, San Diego, United States |
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Forest tree GnpIS: an information system dedicated to forest tree genetics, genomics and phenomicsIUFRO Genomics and Forest Tree Genetics, May 2016, Arcachon, France |
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Contribution to a European roadmap for data standardisation in Plant Science at URGI-INRAPlant Biology Europe EPSO / FESBP 2016 Congress, Jun 2016, Prague, Czech Republic |
IWGSC Sequence Repository: Moving towards tools to facilitate data integration for the reference sequence of wheatPAG XXIV - Plant and Animal Genome Conference, Jan 2016, San Diego, United States |
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Phenotypic Data Exchange and Processing Using ISA-Tab Standard: transPLANT Project Use Case with GnpIS.Ephesis and Bii23. Plant and Animal Genome (PAG), Jan 2015, San Diego, United States |
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Grape@GnpIS: Overview of the GnpIS grape genomics and genetics integrative resource23. Plant and Animal Genome (PAG XXIII), Jan 2015, San Diego, United States. pp.24 slides |
GnpIS-Asso : A Generic Database for Managing and Exploiting Plant Genetic Association Studies Results Using High Throughput Genotyping and Phenotyping Data23. Plant and Animal Genome, Jan 2015, San Diego, United States |
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Information system for phenotype data: trait, trials and genotypes identification and integration22. Conference Plant and Animal Genome, European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI). GBR., Jan 2014, San Diego, United States |
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A generic tool for managing and exploiting genetic association studies results using high throughput genotyping and phenotypingPlant Genomics Seminar 2012, Apr 2012, Pont-Royal en Provence, France |
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Web services for microbial genome annotation using data integrationJOBIM 2010 : Journées Ouvertes en Biologie, Informatique et Mathématiques, Sep 2010, Montpellier, France |
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Improved sensitivity and reliability of anchor based genome alignmentJOBIM - Journées Ouvertes en Biologie Informatique Mathématiques2009 - Nantes :, Jun 2009, Nantes, France. 259 p |
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Improved Sensitivity And Reliability Of Anchor Based Genome AlignmentJOBIM 2009 - 10es Journées Ouvertes en Biologie, Informatique et Mathématiques, Jun 2009, Nantes, France. pp.31-36 |
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BReIF: une e-infrastructure pour accélérer l'utilisation de ressources biologiques diversifiéesTrans Numériques 2026, Feb 2026, Rennes, France. |
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Forest Tree data in FAIDARE, a plant data discovery portalPlant and Animal Genome (PAG), Jan 2025, San Diego (CA), United States |
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URGI – A scientific facility dedicated to plant bioinformaticsJOBIM 2025, Jul 2025, Bordeaux (France), France |
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Learning path development for plant data managementELIXIR All Hands 2023, Jun 2023, Dublin, Ireland. f1000research.com, https://doi.org/10.7490/f1000research.1119444.1, 2023, ⟨10.7490/f1000research.1119444.1⟩ |
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Research Data Management Toolkit (RDMkit): guidelines for plant phenotyping data management and sharing7. International Plant Phenotyping Symposium (IPPS 2022), Sep 2022, Wageningen, Netherlands. , 2022, ⟨10.5281/zenodo.7148792⟩ |
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GEN4x : an experimental network for studying adaptation of forest trees to climate changeAdapting forests to climate change: methods, tools, and projects, Nov 2019, Toulouse, France |
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Findable, Accessible, Interoperable and Reusable data linked to genetic resources for plant biology and breeding at INRACrop diversification in a changing world : Mobilizing the green gold of plant genetic resources, May 2017, Montpellier, France. , 2017, EUCARPIA Genetic Resources 2017 |
Detection of WUE positional candidate genes by combining QTL maps and BAC sequencing with the annotated oak genome sequenceGenomics and Forest Tree Genetics Conference, May 2016, Arcachon, France. , 134 p., 2016, Book of abstracts |
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Forest tree GnpIS: an information system dedicated to forest tree genetics, genomics and phenomics35. New Phytologist Symposium, Jun 2015, Boston, United States. 2015 |
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A computational architecture designed for genome annotation: oak genome sequencing project as a use caseJOBIM 2015 - Journées Ouvertes Biologie Informatique Mathématiques, Jul 2015, Clermont-ferrand, France. 2015 |
GnpSeq NGS: a new tool to manage NGS data in URGI's information system (GnpIS)JOBIM 2012 : Journées Ouvertes en Biologie, Informatique et Mathématiques, 2012, 2012 |
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Plant Science Data Integration, from Building Community Standards to Defining a Consistent Data LifecycleTowards Responsible Plant Data Linkage: Data Challenges for Agricultural Research and Development, Springer International Publishing, pp.149-160, 2023, ⟨10.1007/978-3-031-13276-6_8⟩ |
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Mining plant genomic and genetic data using the GnpIS information systemAalt D.J van Dijk. Plant Genomics Databases. Methods and Protocols, 1533, Springer, 2017, Methods in Molecular Biology, 978-1-4939-6658-5. ⟨10.1007/978-1-4939-6658-5_5⟩ |
Documentation Système d'Information IN-SYLVA France2023 |
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Rapport scientifique de la Convention MAAF-INRAE "CONSERVATION + SELECTION" 2023-2024INRAE. 2024 |
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URGI data management planINRAE. 2024, 22 p |
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Mise en place du système d'information pour la gestion des données des dispositifs expérimentaux de l’infrastructure nationale IN-SYLVA France (adaptation des forêts et l’innovation sylvicole).[Rapport de recherche] INRAE; OFB; CIRAD; FCBA; CNPF; ONF; Université de Rouen - Normandie. 2021, 36p |
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Rapport de synthèse du chantier DOI[0] 2014, 47 p |
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FAIR data PLANT PHENO 2023École thématique. FAIR data PLANT PHENO 2023, Paris, France. 2023 |
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Plant Data Managment for Phenotyping ExperimentsÉcole thématique. France. 2020 |