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Iron Sulfides Produced by Thermococcales: An Iron Detoxification Mechanism
T. Mariotte
,
R. Coudray
,
C Toffano‐nioche
,
F. Guyot
,
A. Gorlas
Article dans une revue
hal-05491370v1
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Deciphering the RNA-based regulation mechanism of the phage-encoded AbiF system in Clostridioides difficile
Marion Saunier
,
Adeline Humbert
,
Victor Kreis
,
Johann Peltier
,
Arianna Tisba
et al.
Article dans une revue
hal-05493468v1
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Staphylococcal aconitase expression during iron deficiency is controlled by an sRNA-driven feedforward loop and moonlighting activity
Maxime Barrault
,
Svetlana Chabelskaya
,
Rodrigo H Coronel-Tellez
,
Claire Toffano-Nioche
,
Eric Jacquet
et al.
Article dans une revue
hal-04614896v1
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Dual RNA-seq study of the dynamics of coding and non-coding RNA expression during Clostridioides difficile infection in a mouse model
Victor Kreis
,
Claire Toffano-Nioche
,
Cécile Denève-Larrazet
,
Jean-Christophe Marvaud
,
Julian R Garneau
et al.
Article dans une revue
hal-04823328v1
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Transinteractome analysis reveals distinct niche requirements for isotype‐based plasma cell subsets in the bone marrow
Amélie Bonaud
,
Pierre Larraufie
,
Mélanie Khamyath
,
Ugo Szachnowski
,
Shaun M Flint
et al.
Article dans une revue
hal-04145276v1
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Identification of RNAs bound by Hfq reveals widespread RNA partners and a sporulation regulator in the human pathogen Clostridioides difficile
Pierre Boudry
,
Emma Piattelli
,
Emilie Drouineau
,
Johann Peltier
,
Anaïs Boutserin
et al.
Article dans une revue
hal-03215481v1
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FAIR_Bioinfo: a turnkey training course and protocol for reproducible computational biology
Thomas Denecker
,
Claire Toffano-Nioche
Article dans une revue
hal-02880655v2
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CRISPRCasdb a successor of CRISPRdb containing CRISPR arrays and cas genes from complete genome sequences, and tools to download and query lists of repeats and spacers
Christine Pourcel
,
Marie Touchon
,
Nicolas Villeriot
,
Jean-Philippe Vernadet
,
David Couvin
et al.
Article dans une revue
hal-02990278v1
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Accurate characterization of Escherichia coli tRNA modifications with a simple method of deep sequencing library preparation
Ji Wang
,
Claire Toffano-Nioche
,
Florence Lorieux
,
Daniel Gautheret
,
Jean Lehmann
Article dans une revue
hal-02898094v1
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Rfam 14: expanded coverage of metagenomic, viral and microRNA families
Ioanna Kalvari
,
Eric P. Nawrocki
,
Nancy Ontiveros-Palacios
,
Joanna Argasinska
,
Kevin Lamkiewicz
et al.
Article dans une revue
hal-03031715v1
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The conserved regulatory RNA RsaE down-regulates the arginine degradation pathway in Staphylococcus aureus
Tatiana Rochat
,
Chantal Bohn
,
Claire Morvan
,
Thao Nguyen Le Lam
,
Fareha Razvi
et al.
Article dans une revue
hal-02183490v1
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CRISPRCasFinder, an update of CRISRFinder, includes a portable version, enhanced performance and integrates search for Cas proteins
David Couvin
,
Aude Bernheim
,
Claire Toffano-Nioche
,
Marie Touchon
,
Juraj Michalik
et al.
Article dans une revue
pasteur-02098389v1
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Assessment of Bona Fide sRNAs in Staphylococcus aureus
Wenfeng Liu
,
Tatiana Rochat
,
Claire Toffano-Nioche
,
Thao Nguyen Le Lam
,
Philippe Bouloc
et al.
Article dans une revue
hal-02180788v1
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Another example of enzymatic promiscuity: the polyphosphate kinase of Streptomyces lividans is endowed with phospholipase D activity
Catherine Esnault
,
Denis Leiber
,
Claire Toffano-Nioche
,
Zahra Tanfin
,
Marie-Joelle Virolle
Article dans une revue
hal-01412320v1
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Revisiting the structure/function relationships of H/ACA(-like) RNAs: A unified model for Euryarchaea and Crenarchaea
Claire Toffano-Nioche
,
Daniel Gautheret
,
Fabrice Leclerc
Article dans une revue
hal-01464539v1
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Comparative genomics reveals conserved positioning of essential genomic clusters in highly rearranged Thermococcales chromosomes
Matteo Cossu
,
Violette Da Cunha
,
Claire Toffano-Nioche
,
Patrick Forterre
,
Jacques Oberto
Article dans une revue
hal-01234160v1
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RNA at 92 °C: The non-coding transcriptome of the hyperthermophilic archaeon Pyrococcus abyssi.
Claire Toffano-Nioche
,
Alban Ott
,
Estelle Crozat
,
an N Nguyen
,
Matthias Zytnicki
et al.
Article dans une revue
hal-00863721v1
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Detection of non-coding RNA in bacteria and archaea using the DETR'PROK Galaxy pipeline
Claire Toffano-Nioche
,
Yufei Luo
,
Claire Kuchly
,
Claire Wallon
,
Delphine D. Steinbach
et al.
Article dans une revue
hal-02648776v1
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Transcriptomic profiling of the oyster pathogen Vibrio splendidus opens a window on the evolutionary dynamics of the small RNA repertoire in the Vibrio genus.
Claire Toffano-Nioche
,
an N Nguyen
,
Claire Kuchly
,
Alban Ott
,
Daniel Gautheret
et al.
Article dans une revue
hal-00757205v1
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Genes of the most conserved WOX clade in plants affect root and flower development in Arabidopsis
Yves Deveaux
,
Claire Toffano-Nioche
,
Gaëlle Claisse
,
Vincent Thareau
,
Halima Morin
et al.
Article dans une revue
hal-02663715v1
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Formation of the Arabidopsis Pentatricopeptide Repeat Family
Eric Rivals
,
Clémence Bruyère
,
Claire Toffano-Nioche
,
Alain Lecharny
Article dans une revue
lirmm-00109042v1
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GeneFarm, structural and functional annotation of Arabidopsis gene and protein families by a network of experts
Sebastien Aubourg
,
Veronique Brunaud
,
Clémence Bruyère
,
J. Mark Cock
,
Richard Cooke
et al.
Article dans une revue
hal-01189162v1
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DEAD-box RNA helicases in Arabidopsis thaliana: establishing a link between quantitative expression, gene structure and evolution of a family of genes
A. Mingam
,
Claire Toffano-Nioche
,
Véronique Brunaud
,
Nathalie Boudet
,
M. Kreis
et al.
Article dans une revue
istex
hal-02682507v1
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Evolution of intron/exon structure of DEAD helicase family genes in Arabidopsis, Caenorhabdtitis, and Drosophila
Nathalie Boudet
,
Sebastien Aubourg
,
Claire Toffano-Nioche
,
M. Kreis
Genome Research, 2001, 11, pp.2101-2114
Article dans une revue
hal-02672398v1
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Genomic exploration of the hemiascomycetous yeasts: 20. Evolution of gene redundancy compared to Saccharomyces cerevisiae
Bertrand Llorente
,
Pascal Durrens
,
Alain Malpertuy
,
Michel Aigle
,
François Artiguenave
et al.
Article dans une revue
hal-02696721v1
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Genomic exploration of the hemiascomycetous yeasts: I. A set of yeast species for molecular evolution studies
Jean-Luc Souciet
,
Michel Aigle
,
François Artiguenave
,
Gaëlle Blandin
,
Monique Bolotin-Fukuhara
et al.
Article dans une revue
hal-02694630v1
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Genomic Exploration of the Hemiascomycetous Yeasts: 4. The genome of Saccharomyces cerevisiae revisited
Gaëlle Blandin
,
Pascal Durrens
,
Fredj Tekaia
,
Michel Aigle
,
Monique Bolotin-Fukuhara
et al.
Article dans une revue
hal-00306551v1
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Genomic exploration of the hemiascomycetous yeasts: 3. Methods and strategies used for sequence analysis and annotation
F. Tekaia
,
Gallien Blandin
,
A. Malpertuy
,
B. Llorente
,
P. Durrens
et al.
FEBS Letters, 2000, 487, pp.17-30
Article dans une revue
hal-02696093v1
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