
Clémence Frioux
68
Documents
Publications
Publications
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Revealing the dynamics and mechanisms of bacterial interactions in cheese production with metabolic modelling 6 may 2025 / Modélisation du microbiomeNEM 2025 - Journées Nutrition & Ecologie Microbienne, workshop modélisation du microbiome, May 2025, Rennes (Distanciel), France
Communication dans un congrès
hal-05059688
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Assessing assembly quality in metagenomes of increasing complexity sequenced with HiFi long reads2024 - 24th Genome Informatics meeting, Nov 2024, Hinxton, United Kingdom. pp.1-21
Communication dans un congrès
hal-04822870
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Modelling the dynamics of Salmonella infection in the gut at the bacterial and host levelsSBMI 2023 - 7th International Symposium on Systems Biology of Microbial Infection, Sep 2023, Jena, Germany
Communication dans un congrès
hal-04229116
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Accelerating metabolic models evaluation with statistical metamodels: application to Salmonella infection modelsCEMRACS 2021 - Data Assimilation and Reduced Modeling for High Dimensional Problems, Jul 2021, Luminy (CIRM, Centre International de Rencontres Mathématiques), France. pp.187-217, ⟨10.1051/proc/202373187⟩
Communication dans un congrès
hal-03635862
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A logic programming exploration of metabolic networks to explain microbial community modelsGT Bioss 2022 - Journée annuelle du Groupe de Travail sur la Biologie Systémique Symbolique, Nov 2022, Nantes, France
Communication dans un congrès
hal-03910483
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Metatranscriptomics and metabolic modeling to identify bacterial metabolic interactions during the manufacture of a model pressed cheese.FOODMICRO 2022, Aug 2022, Athènes, Greece
Communication dans un congrès
hal-03781287
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Métatranscriptomique et modèle métabolique pour identifier la succession des métabolismes bactériens en interaction lors de la fabrication d’un fromage modèle à pâte pressée.23ème édition du colloque du Club des Bactéries Lactiques, UMR INRAE - Institut Agro STLO (Science et Technologie du Lait et de l’Œuf), Jun 2022, Rennes, France
Communication dans un congrès
hal-03694338
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Reasoning approaches for the characterization of cooperation and competition in large-scale microbial communitiesJournée GT Bioss 2022, Nov 2022, Nantes, France
Communication dans un congrès
hal-03857781
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Characterizing microbial interactions in controlled and natural microbial communitiesWorkshop SymBioDiversity, May 2022, Santiago, Chile
Communication dans un congrès
hal-03857848
v2
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Logic modelling of metabolism: from individual networks to communitiesWorkshop Modélisation du Métabolisme, Nov 2021, Bordeaux, France
Communication dans un congrès
hal-03440196
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Metabolic complementarity applied to the screening of microbiota and the identification of key speciesCMSB 2021 - 19th International Conference on Computational Methods in Systems Biology, Sep 2021, Bordeaux, France. pp.1-27
Communication dans un congrès
hal-03440212
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Metabolic modelling deciphers interactions in a cheese bacterial communityMetaboday 2021, Mar 2021, Bordeaux, France
Communication dans un congrès
hal-03531761
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Metabolic complementarity applied to the screening of microbiota and the identification of key speciesJOBIM 2021 - Journées Ouvertes en Biologie, Informatique et Mathématiques, Jul 2021, Paris, France
Communication dans un congrès
hal-03440232
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Metabolic complementarity applied to the screening of microbiota and the identification of key speciesMPA 2021 - 8th Metabolic Pathway Analysis, Aug 2021, Knoxville, TN, United States. pp.1-27
Communication dans un congrès
hal-03440221
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Scalable and exhaustive screening of metabolic functions carried out by microbial consortiaECCB - 2018 - 17th European Conference on Computational Biology, Sep 2018, Athènes, Greece. pp.i934-i943, ⟨10.1093/bioinformatics/bty588⟩
Communication dans un congrès
hal-01946860
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Hybrid Metabolic Network Completion14th International Conference on Logic Programming and Nonmonotonic Reasoning - LPNMR 2017, Jul 2017, Espoo, Finland. pp.308-321
Communication dans un congrès
hal-01557347
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Toward the study of metabolic functions in algal holobionts4ème Colloque de Génomique Environnementale, Sep 2017, Marseille, France
Communication dans un congrès
hal-01576484
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Handling the heterogeneity of genomic and metabolic networks data within flexible workflows with the PADMet toolboxJobim 2016 : 17ème Journées Ouvertes en Biologie, Informatique et Mathématiques, Jun 2016, Lyon, France
Communication dans un congrès
hal-01377844
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Generation of metabolomic-informed models of metabolism in complex microbial communitiesJournées scientifiques Agroécologie et Numérique 2025, Jan 2025, Dijon, France.
Poster de conférence
hal-04919231
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Mapler: Assessing assembly quality in taxonomically-rich metagenomes sequenced with HiFi reads2025 - Journées scientifiques Agroécologie et Numérique, Jan 2025, Dijon, France. , pp.1-1, 2025
Poster de conférence
hal-04941137
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Enhancing Microbial Genome Reconstruction in Complex Environments by combining Short-and Long-read Sequencing2025 - Journées scientifiques Agroécologie et Numérique, Jan 2025, Dijon, France. , pp.1-1, 2025
Poster de conférence
hal-04920790
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Generation of metabolomic-informed models of metabolism in complex microbial communitiesJournées Jeunes Chercheurs Chercheuses du département BAP de INRAE, May 2025, Villenave d'Ornon, France
Poster de conférence
hal-05073304
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Exploring and quantifying the soil genetic diversity captured by long and short-read shotgun metagenomic sequencingJournées 2024 du programme Agroécologie et Numérique, Jan 2024, Rennes, France. , pp.1-1, 2024
Poster de conférence
hal-04423917
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Metagenomic assembly of complex ecosystems with highly accurate long-readsJournées 2024 du PEPR Agroécologie et Numérique, Jan 2024, Rennes, France. pp.1-1, 2024
Poster de conférence
hal-04425626
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Metagenome-scale metabolic modelling for the characterization of cross-feeding interactions in Microcystis-associated microbial communities, in the context of freshwater cyanobacterial bloomsJOBIM 2024 - Journées Ouvertes en Biologie, Informatique et Mathématiques, Jun 2024, Toulouse, France. pp.1-1, 2024
Poster de conférence
hal-04654522
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Unlocking the Soil Microbiome: Unraveling Soil Microbial Complexity Using Long-Read MetagenomicsEAGS 2024 - The International Environmental and Agronomical Genomics symposium, Feb 2024, Toulouse, France. , pp.1-1, 2024
Poster de conférence
hal-04509213
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Modelling the dynamics of Salmonella infection in the gut at the bacterial and host levelsISMB/ECCB 2023 - 31st Annual Intelligent Systems For Molecular Biology and the 22nd Annual European Conference on Computational Biology, Jul 2023, Lyon, France.
Poster de conférence
hal-04183811
v1
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Logic and linear programming for seed identification in metabolic networksBiorégul 2023 - Modélisation Formelle de Réseaux de Régulation Biologique, Jun 2023, Porquerolles (Hyères), France. pp.1-1, 2023
Poster de conférence
hal-04328778
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Modelling the dynamics of Salmonella infection in the gut at the bacterial and host levelsSBMI 2023 - 7th International Symposium on Systems Biology of Microbial Infection, Sep 2023, Jena, Germany.
Poster de conférence
hal-04229130
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Dynamic Flux Balance Analysis with MetamodelsJOBIM 2022 - Les Journées Ouvertes en Biologie, Informatique et Mathématiques, Jul 2022, Rennes, France.
Poster de conférence
hal-04236775
v1
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Modelling the dynamics of Salmonella infection in the gut at the bacterial and the host levelMicrobial communities: current approaches and open challenges, Oct 2022, Cambridge, United Kingdom
Poster de conférence
hal-03839405
v1
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Analyzing and modelling functions carried by key species in minimal microbial communitiesJOBIM 2022 - Journées Ouvertes en Biologie, Informatique et Mathématiques, Jul 2022, Rennes, France
Poster de conférence
hal-03910438
v1
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Characterising competition and cooperation potentials in microbial communities using discrete models of metabolism. An exploratory analysisJOBIM 2022 - JOURNÉES OUVERTES EN BIOLOGIE, INFORMATIQUE ET MATHÉMATIQUES, Jul 2022, Rennes, France
Poster de conférence
hal-03839337
v1
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Dynamic Flux Balance Analysis with MetamodelsMicrobial communities: current approaches and open challenges, Oct 2022, Cambridge, United Kingdom.
Poster de conférence
hal-04252041
v1
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Modelling the dynamics of Salmonella infection in the gut at the bacterial and host levelsJOBIM 2022 - Journées Ouvertes en Biologie, Informatique et Mathématiques, Jul 2022, Rennes, France
Poster de conférence
hal-03839374
v1
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Modelling metabolic network dynamics in a cheese bacterial communityCMSB, The 19th conference on Computational Methods in Systems Biology, Sep 2021, Bordeaux, France
Poster de conférence
hal-03533795
v1
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Modelling metabolic network dynamics in a cheese bacterial communityMPA, Metabolic Pathway Analysis, Aug 2021, Knoxville, United States
Poster de conférence
hal-03533786
v1
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Assessment of metabolic complementarity in large-scale microbiotas for the identification of key speciesIHMC 2021 - 8th International Human Microbiome Consortium Congress, Jun 2021, Barcelone, Spain. pp.1
Poster de conférence
hal-03438983
v1
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Modelling metabolic network dynamics in a cheese bacterial communityJOBIM,Journées Ouvertes en Biologie, Informatique et Mathématiques, Jul 2021, Paris, France
Poster de conférence
hal-03533781
v1
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Metage2Metabo: metabolic complementarity applied to genomes of large-scale microbiotas for the identification of keystone speciesJOBIM 2020 - Journées Ouvertes de Biologie, Informatique et Mathématique, Jun 2020, Montpellier / Virtual, France. ⟨10.1101/803056⟩
Poster de conférence
hal-03151934
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Problèmes d'optimisation combinatoire pour l'étude du métabolismeApproches symboliques de la modélisation et de l’analyse des systèmes biologiques, ISTE éditions, 2022, Encyclopédie Sciences, 9781789480290. ⟨10.51926/ISTE.9029.ch2⟩
Chapitre d'ouvrage
hal-03885249
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Mapler: Assessing assembly quality in taxonomically rich metagenomes sequenced with HiFi reads2025
Pré-publication, Document de travail
hal-04993862
v1
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Estimating consensus proteomes and metabolic functions from taxonomic affiliations2025
Pré-publication, Document de travail
hal-03697249
v2
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Seed2LP: seed inference in metabolic networks for reverse ecology applications2024
Pré-publication, Document de travail
hal-04713829
v1
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Modeling the emergent metabolic potential of soil microbiomes in Atacama landscapes2024
Pré-publication, Document de travail
hal-04854948
v1
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Revealing the dynamics and mechanisms of bacterial interactions in cheese production with metabolic modelling2023
Pré-publication, Document de travail
hal-04088301
v2
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The genome of Ectocarpus subulatus -a highly stress-tolerant brown alga2019
Pré-publication, Document de travail
hal-02333021
v1
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