Adrien Coulet

90
Documents
Affiliations actuelles
  • Centre Inria de Paris
  • Centre de Recherche des Cordeliers (CRC (UMR_S_1138 / U1138))
  • Health data- and model- driven Knowledge Acquisition (HeKA)
Identifiants chercheurs

Publications

Publications

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Deep reinforcement learning for personalized diagnostic decision pathways using electronic health records: A comparative study on anemia and systemic lupus erythematosus

Lillian Muyama , Antoine Neuraz , Adrien Coulet
Artificial Intelligence in Medicine, 2024, 157, pp.102994. ⟨10.1016/j.artmed.2024.102994⟩
Article dans une revue hal-04723764 v1

Machine learning approaches for the discovery of clinical pathways from patient data: A systematic review

Lillian Muyama , Antoine Neuraz , Adrien Coulet
Journal of Biomedical Informatics, 2024, pp.104746. ⟨10.1016/j.jbi.2024.104746⟩
Article dans une revue hal-04783491 v1
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Facilitating phenotyping from clinical texts: the medkit library

Antoine Neuraz , Ghislain Vaillant , Camila Arias , Olivier Birot , Kim-Tam Huynh et al.
Bioinformatics, 2024, pp.btae681. ⟨10.1093/bioinformatics/btae681⟩
Article dans une revue hal-04802917 v1
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Étudier les mécanismes des effets indésirables des médicaments avec l'IA explicable : expériences avec la fouille de graphes de connaissances

Pierre Monnin , Adrien Coulet
Bulletin de l'Association Française pour l'Intelligence Artificielle, 2022
Article dans une revue hal-03669065 v1
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Discovering alignment relations with Graph Convolutional Networks: A biomedical case study

Pierre Monnin , Chedy Raïssi , Amedeo Napoli , Adrien Coulet
Semantic Web – Interoperability, Usability, Applicability, 2022, pp.1-20. ⟨10.3233/SW-210452⟩
Article dans une revue hal-03452182 v1
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Technical, Ethical, Legal, and Societal Challenges With Digital Twin Systems for the Management of Chronic Diseases in Children and Young People

David Drummond , Adrien Coulet
Journal of Medical Internet Research, 2022, 24 (10), pp.e39698. ⟨10.2196/39698⟩
Article dans une revue hal-03835708 v1
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Projet ANR (2016-2021) « PractiKPharma » : extraction, comparaison et découverte de connaissances en pharmacogénomique

Pierre Monnin , Adrien Coulet
1024 : Bulletin de la Société Informatique de France, 2022, 19, pp.109 - 120. ⟨10.48556/sif.1024.19.109⟩
Article dans une revue hal-03669026 v1

Syntax-based transfer learning for the task of biomedical relation extraction

Joël Legrand , Yannick Toussaint , Chedy Raïssi , Adrien Coulet
Journal of Biomedical Semantics, 2021, 12 (1), ⟨10.1186/s13326-021-00248-y⟩
Article dans une revue hal-03330823 v1
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L'équipe-projet HeKA

Adrien Coulet , Stéphanie Allassonniere , François Angoulvant , Anita Burgun , Xiaoyi Chen et al.
Bulletin de l'Association Française pour l'Intelligence Artificielle, 2021, 112, pp.29-32
Article dans une revue hal-03485904 v1
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Investigating ADR mechanisms with Explainable AI: a feasibility study with knowledge graph mining

Emmanuel Bresso , Pierre Monnin , Cédric Bousquet , François-Elie Calvier , Ndeye-Coumba Ndiaye et al.
BMC Medical Informatics and Decision Making, 2021, 21 (1), pp.171. ⟨10.1186/s12911-021-01518-6⟩
Article dans une revue hal-03240476 v1

PGxCorpus, a manually annotated corpus for pharmacogenomics

Joël Legrand , Romain Gogdemir , Cedric Bousquet , Kevin Dalleau , Marie-Dominique Devignes et al.
Scientific Data , 2020, 7, pp.3. ⟨10.1038/s41597-019-0342-9⟩
Article dans une revue hal-02547607 v1
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PGxO and PGxLOD: a reconciliation of pharmacogenomic knowledge of various provenances, enabling further comparison

Pierre Monnin , Joël Legrand , Graziella Husson , Patrice Ringot , Andon Tchechmedjiev et al.
BMC Bioinformatics, 2019, 20 (S4), ⟨10.1186/s12859-019-2693-9⟩
Article dans une revue hal-02103899 v1

Atherosclerotic Cardiovascular Disease Risk Prediction in Disaggregated Asian and Hispanic Subgroups Using Electronic Health Records

Fatima Rodriguez , Sukyung Chung , Manuel Blum , Adrien Coulet , Sanjay Basu et al.
Journal of the American Heart Association, 2019, 8 (14), ⟨10.1161/JAHA.118.011874⟩
Article dans une revue hal-02196129 v1
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Predicting the need for a reduced drug dose, at first prescription

Adrien Coulet , Nigam H. Shah , Maxime Wack , Mohammad Chawki , Nicolas Jay et al.
Scientific Reports, 2018, 8 (1), ⟨10.1038/s41598-018-33980-0⟩
Article dans une revue hal-01901566 v1
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Learning from biomedical linked data to suggest valid pharmacogenes

Kevin Dalleau , Yassine Marzougui , Sébastien da Silva , Patrice Ringot , Ndeye Coumba Ndiaye et al.
Journal of Biomedical Semantics, 2017, 8 (1), pp.16. ⟨10.1186/s13326-017-0125-1⟩
Article dans une revue hal-01511773 v1
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Discovering associations between adverse drug events using pattern structures and ontologies

Gabin Personeni , Emmanuel Bresso , Marie-Dominique Devignes , Michel Dumontier , Malika Smaïl-Tabbone et al.
Journal of Biomedical Semantics, 2017, 93, pp.539 - 546. ⟨10.1186/s13326-017-0137-x⟩
Article dans une revue hal-01576341 v1
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Mining Electronic Health Records to Validate Knowledge in Pharmacogenomics

Adrien Coulet , Malika Smaïl-Tabbone
ERCIM News, 2016, ERCIM News 104, Special theme: Tackling Big Data in the Life Sciences, 104, pp.56
Article dans une revue hal-01369501 v1

Semantically enabling pharmacogenomic data for the realization of personalized medicine.

Matthias Samwald , Adrien Coulet , Iker Huerga , Robert L Powers , Joanne S Luciano et al.
Pharmacogenomics, 2012, 13 (2), pp.201-12. ⟨10.2217/pgs.11.179⟩
Article dans une revue hal-00752095 v1

Using ontology-based annotation to profile disease research

Yi Liu , Adrien Coulet , Paea Lependu , Nigam H Shah
Journal of the American Medical Informatics Association, 2012, 19 (e1), pp.e177-e186. ⟨10.1136/amiajnl-2011-000631⟩
Article dans une revue hal-00752101 v1

Guest Editorial: The state of the art in text mining and natural language processing for pharmacogenomics

Adrien Coulet , Kevin Bretonnel Cohen , Russ B. Altman
Journal of Biomedical Informatics, 2012, 45 (5), pp.825-826
Article dans une revue hal-00752106 v1
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Integration and publication of heterogeneous text-mined relationships on the Semantic Web

Adrien Coulet , Yael Garten , Michel Dumontier , Russ B Altman , Mark A. Musen et al.
Journal of Biomedical Semantics, 2011, 2 (S2), pp.S10
Article dans une revue hal-00585215 v1
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NCBO Resource Index: Ontology-Based Search and Mining of Biomedical Resources

Clement Jonquet , Paea Lependu , Sean Falconer , Adrien Coulet , Natalya F. Noy et al.
Journal of Web Semantics, 2011, 9 (3), pp.316-324. ⟨10.1016/j.websem.2011.06.005⟩
Article dans une revue lirmm-00622155 v2

Extraction of genotype-phenotype-drug relationships from text: from entity recognition to bioinformatics application.

Adrien Coulet , Nigam H. Shah , Lawrence Hunter , Chitta Barral , Russ B Altman
Pacific Symposium on Biocomputing, 2010, pp.485-7
Article dans une revue inria-00549705 v1

Recent progress in automatically extracting information from the pharmacogenomic literature.

Yael Garten , Adrien Coulet , Russ B Altman
Pharmacogenomics / Personalized Medicine, 2010, 11 (10), pp.1467-89. ⟨10.2217/pgs.10.136⟩
Article dans une revue inria-00549699 v1

Using text to build semantic networks for pharmacogenomics

Adrien Coulet , Nigam H Shah , Yael Garten , Mark A. Musen , Russ B Altman
Journal of Biomedical Informatics, 2010, 43 (6), pp.1009-19. ⟨10.1016/j.jbi.2010.08.005⟩
Article dans une revue inria-00549695 v1

Ontology-guided data preparation for discovering genotype-phenotype relationships

Adrien Coulet , Malika Smaïl-Tabbone , Pascale Benlian , Amedeo Napoli , Marie-Dominique Devignes
BMC Bioinformatics, 2008, 9 (Suppl 4), pp.S3. ⟨10.1186/1471-2105-9-S4-S3⟩
Article dans une revue inria-00338669 v1
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Comparing representations of long clinical texts for the task of patient note-identification

Safa Alsaidi , Marc Vincent , Olivia Boyer , Nicolas Garcelon , Miguel Couceiro et al.
CL4Health@NAACL 2025: Second Workshop on Patient-oriented Language Processing (CL4Health), at NAACL 2025, May 2025, Albuquerque, New Mexico, United States
Communication dans un congrès hal-05000565 v2
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Comparing NER approaches on French clinical text, with easy-to-reuse pipelines

Thibault Hubert , Ghislain Vaillant , Olivier Birot , Camila Arias , Antoine Neuraz et al.
MIE 2024 - 34th Medical Informatics Europe Conference, Aug 2024, Athens, Greece
Communication dans un congrès hal-04584688 v1
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Des pipelines faciles à réutiliser pour comparer les performances d'outils de reconnaissance d'entités nommées sur les textes cliniques en français

Thibault Thubert , Ghislain Vaillant , Olivier Birot , Camila Arias , Antoine Neuraz et al.
PFIA 2024 - Journée Santé et IA de la Plate-Forme Intelligence Artificielle, Jul 2024, La Rochelle, France
Communication dans un congrès hal-04889682 v1
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Representation and comparison of chemotherapy protocols with ChemoKG and graph embeddings

Jong Ho Jhee , Alice Rogier , Dune Giraud , Emma Pinet , Brigitte Sabatier et al.
SWAT4HCLS 2024 - 15th International Semantic Web Applications and Tools for Health Care and Life Sciences Conference, Feb 2024, Leiden, Netherlands
Communication dans un congrès hal-04455155 v1
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Prompting Large Language Models for Supporting the Differential Diagnosis of Anemia

Elisa Castagnari , Lillian Muyama , Adrien Coulet
LLMs4MI 2024 @FLLM 2024 - First International Workshop on Large Language Models Applications in Medical Informatics In conjunction with the The Second International Conference on Foundation and Large Language Models, IEEE, Nov 2024, Dubai, United Arab Emirates
Communication dans un congrès hal-04695193 v1
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Results of the Ontology Alignment Evaluation Initiative 2024

Mina Abd Nikooie Pour , Alsayed Algergawy , Eva Blomqvist , Patrice Buche , Jiaoyan Chen et al.
OM 2024 - 19th International Workshop on Ontology Matching (collocated with ISWC-2024), Nov 2024, Baltimore, United States. pp.1-34
Communication dans un congrès hal-04892635 v1
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TAXN: Translate Align Extract Normalize, a multilingual extraction tool for clinical texts

Antoine Neuraz , Ivan Lerner , Olivier Birot , Camila Arias , Larry Han et al.
MedInfo 2023 – the 19th world congress on Medical and Health Informatics, International Medical Informatics Association (IMIA), Jul 2023, Syndney, Australia
Communication dans un congrès hal-04069590 v1
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Evaluating the Portability of Rheumatoid Arthritis Phenotyping Algorithms: case study on French EHRs

Thibaut Fabacher , Erik-André Sauleau , Noémie Leclerc , Hugo Bergier , Jacques-Eric Gottenberg et al.
33rd Medical Informatics Europe Conference, MIE2023, May 2023, Gothenburg, Sweden. pp.768-772, ⟨10.3233/SHTI230263⟩
Communication dans un congrès hal-04069779 v1
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Results of the Ontology Alignment Evaluation Initiative 2023

Mina Abd Nikooie Pour , Alsayed Algergawy , Patrice Buche , Leyla Jael Castro , Jiaoyan Chen et al.
18th International Workshop on Ontology Matching (OM 2023), Nov 2023, Athens, Greece. pp.97--139
Communication dans un congrès hal-04366893 v1
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Exploring Analogical Inference in Healthcare

Safa Alsaidi , Miguel Couceiro , Sophie Quennelle , Anita Burgun , Nicolas Garcelon et al.
IARML@IJCAI-ECAI’2022: Workshop on the Interactions between Analogical Reasoning and Machine Learning, at IJCAI-ECAI’2022, Jul 2022, Vienna, Austria
Communication dans un congrès hal-03955354 v1
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Matching Pharmacogenomic Knowledge: Particularities, Results, and Perspectives

Pierre Monnin , Adrien Coulet
17th International Workshop on Ontology Matching : OM-2022, Oct 2022, Virtual, China
Communication dans un congrès hal-03835712 v1
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Combiner plongements de graphes et clustering pour l'alignement de connaissances pharmacogénomiques

Pierre Monnin , Chedy Raïssi , Amedeo Napoli , Adrien Coulet
Santé & IA 2022 - Journée Santé et Intelligence Artificielle (Evènement affilié à PFIA 2022), Jun 2022, Saint-Etienne, France
Communication dans un congrès hal-03754776 v1
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An analogy based framework for patient-stay identification in healthcare

Safa Alsaidi , Miguel Couceiro , Esteban Marquer , Sophie Quennelle , Anita Burgun et al.
ATA@ICCBR 2022 - Workshop Analogies: from Theory to Applications, Sep 2022, Nancy, France
Communication dans un congrès hal-03763772 v1
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Portabilité des algorithmes de phénotypage: le cas de la polyarthrite rhumatoïde dans le dossier patient informatisé en français

Thibaut Fabacher , Erik André Sauleau , Noémie Leclerc Du Sablon , Hugo Bergier , Jacques‐eric Gottenberg et al.
TAL 2022 - Journée d’étude sur la robustesse des systemes de TAL, ATALA, Nov 2022, Paris, France
Communication dans un congrès hal-04295970 v1
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Using an ontological representation of chemotherapy toxicities for guiding information extraction and integration from EHRs

Alice Rogier , Adrien Coulet , Bastien Rance
Medinfo 2021 - 18th World Congress on Medical and Health Informatics, Oct 2021, Virtual conference, Australia
Communication dans un congrès hal-03364585 v1
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Expérimentations autour des architectures d'apprentissage par transfert pour l'extraction de relations biomédicales

Walid Hafiane , Joël Legrand , Yannick Toussaint , Adrien Coulet
EGC 2021 - 21ème édition de la conférence "Extraction et Gestion des Connaissances", Jan 2021, Montpellier / Virtuel, France
Communication dans un congrès hal-03073601 v1
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Knowledge-Based Matching of $n$-ary Tuples

Pierre Monnin , Miguel Couceiro , Amedeo Napoli , Adrien Coulet
ICCS 2020 - 25th International Conference on Conceptual Structures, Sep 2020, Bolzano / Virtual, Italy. pp.48-56, ⟨10.1007/978-3-030-57855-8_4⟩
Communication dans un congrès hal-02493067 v1
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Tackling scalability issues in mining path patterns from knowledge graphs: a preliminary study

Pierre Monnin , Emmanuel Bresso , Miguel Couceiro , Malika Smaïl-Tabbone , Amedeo Napoli et al.
ALGOS 2020 - 1st International Conference on Algebras, Graphs and Ordered Sets, Aug 2020, Nancy, France
Communication dans un congrès hal-02913224 v1
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Creating Fair Models of Atherosclerotic Cardiovascular Disease Risk

Stephen Pfohl , Ben Marafino , Adrien Coulet , Fatima Rodriguez , Latha Palaniappan et al.
AIES '19 - Proceedings of the 2019 AAAI/ACM Conference on AI, Ethics, and Society, Jan 2019, Honolulu, United States. pp.271-278, ⟨10.1145/3306618.3314278⟩
Communication dans un congrès hal-02388730 v1
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Knowledge Reconciliation with Graph Convolutional Networks: Preliminary Results

Pierre Monnin , Chedy Raïssi , Amedeo Napoli , Adrien Coulet
DL4KG2019 - Workshop on Deep Learning for Knowledge Graphs, Jun 2019, Portoroz, Slovenia
Communication dans un congrès hal-02155546 v1
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Syntax-based Transfer Learning for the Task of Biomedical Relation Extraction

Joël Legrand , Yannick Toussaint , Chedy Raïssi , Adrien Coulet
LOUHI 2018 - The Ninth International Workshop on Health Text Mining and Information Analysis, Oct 2018, Brussels, Belgium
Communication dans un congrès hal-01869071 v1
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Combining Concept Annotation and Pattern Structures for Guiding Ontology Mapping

Pierre Monnin , Amedeo Napoli , Adrien Coulet
FCA4AI@IJCAI2018 - 6th International Workshop "What can FCA do for Artificial Intelligence?", Jul 2018, Stockholm, Sweden
Communication dans un congrès hal-01858391 v1
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Cooperation of bio-ontologies for the classification of genetic intellectual disabilities : a diseasome approach

Gabin Personeni , Marie-Dominique Devignes , Malika Smaïl-Tabbone , Philippe Jonveaux , Céline Bonnet et al.
Proceedings of the 11th International Conference on Semantic Web Applications and Tools for Healthcare and Life Sciences (SWAT4HCLS 2018), Dec 2018, Antwerp, Belgium
Communication dans un congrès hal-01925471 v1
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Découverte d'associations entre Evénements Indésirables Médicamenteux par les structures de patrons et les ontologies

Gabin Personeni , Emmanuel Bresso , Marie-Dominique Devignes , Michel Dumontier , Malika Smaïl-Tabbone et al.
Journée I.A. et Santé, Jul 2018, Nancy, France
Communication dans un congrès hal-01872312 v1
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Using formal concept analysis for checking the structure of an ontology in LOD: the example of DBpedia

Pierre Monnin , Mario Lezoche , Amedeo Napoli , Adrien Coulet
23rd International Symposium on Methodologies for Intelligent Systems, ISMIS 2017, Warsaw university of technology, Jun 2017, Warsaw, Poland. pp.674-683, ⟨10.1007/978-3-319-60438-1_66⟩
Communication dans un congrès hal-01511909 v1
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Tree-LSTM and Cross-Corpus Training for Extracting Biomedical Relationships from Text

Joël Legrand , Yannick Toussaint , Chedy Raïssi , Adrien Coulet
DLPM2017 Workshop - 2nd International Workshop on Deep Learning for Precision Medicine, Sep 2017, Skopje, Macedonia
Communication dans un congrès hal-01592802 v1
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PGxO: A very lite ontology to reconcile pharmacogenomic knowledge units

Pierre Monnin , Clement Jonquet , Joël Legrand , Amedeo Napoli , Adrien Coulet
Methods, tools & platforms for Personalized Medicine in the Big Data Era, Oct 2017, Palermo, Italy. ⟨10.7287/peerj.preprints.3140v1⟩
Communication dans un congrès hal-01593184 v2
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Discovering ADE associations from EHRs using pattern structures and ontologies

Gabin Personeni , Marie-Dominique Devignes , Michel Dumontier , Malika Smaïl-Tabbone , Adrien Coulet
Phenotype Day, Bio-Ontologies SIG, ISMB, Jul 2016, Orlando, United States
Communication dans un congrès hal-01369448 v1
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Extraction d'association d'EIM à partir de dossiers patients : expérimentation avec les structures de patrons et les ontologies

Gabin Personeni , Marie-Dominique Devignes , Michel Dumontier , Malika Smaïl-Tabbone , Adrien Coulet
Deuxième Atelier sur l'Intelligence Artificielle et la Santé, Jun 2016, Montpellier, France
Communication dans un congrès hal-01391172 v1
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Extracting Disease-Symptom Relationships by Learning Syntactic Patterns from Dependency Graphs

Mohsen Hassan , Olfa Makkaoui , Adrien Coulet , Yannick Toussaint
BioNLP 15, Association for Computational Linguistics, Jul 2015, Beijing, China. pp.184
Communication dans un congrès hal-01184655 v1
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Suggesting valid pharmacogenes by mining linked data

Kevin Dalleau , Ndeye Coumba Ndiaye , Adrien Coulet
Semantic Web Applications and Tools for Life Sciences (SWAT4LS) 2015, Dec 2015, Cambridge, United Kingdom
Communication dans un congrès hal-01239568 v1
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Mining Linked Open Data: A Case Study with Genes Responsible for Intellectual Disability

Gabin Personeni , Simon Daget , Céline Bonnet , Philippe Jonveaux , Marie-Dominique Devignes et al.
Data Integration in the Life Sciences - 10th International Conference, DILS 2014, Jul 2014, Lisbon, Portugal. pp.16 - 31, ⟨10.1007/978-3-319-08590-6_2⟩
Communication dans un congrès hal-01095591 v1
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ILP for Mining Linked Open Data: a biomedical Case Study

Gabin Personeni , Simon Daget , Céline Bonnet , Philippe Jonveaux , Marie-Dominique Devignes et al.
The 24th International Conference on Inductive Logic Programming (ILP 2014), Sep 2014, Nancy, France
Communication dans un congrès hal-01095597 v1
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Learning Subgraph Patterns from text for Extracting Disease–Symptom Relationships

Mohsen Hassan , Adrien Coulet , Yannick Toussaint
1st International Workshop on Interactions between Data Mining and Natural Language Processing, Sep 2014, Nancy, France
Communication dans un congrès hal-01095595 v1
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Using Pattern Structures for Analyzing Ontology-Based Annotations of Biomedical Data

Adrien Coulet , Florent Domenach , Mehdi Kaytoue , Amedeo Napoli
International Conference on Formal Concept Analysis, May 2013, Dresden, Germany
Communication dans un congrès hal-00880643 v1
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Using pattern structures for analyzing ontology-based annotations of biomedical data

Adrien Coulet , Florent Domenach , Mehdi Kaytoue , Amedeo Napoli
Septièmes Journées d'Intelligence Artificielle Fondamentale, Jun 2013, Aix-en-Provence, France. pp.97--106
Communication dans un congrès hal-00922392 v1
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Lattice Based Data Access (LBDA): An Approach for Organizing and Accessing Linked Open Data in Biology

Mehwish Alam , Melisachew Wudage Chekol , Adrien Coulet , Amedeo Napoli , Malika Smaïl-Tabbone
DMoLD'13 - Data Mining on Linked Data Workshop (ECML/PKDD, 2013), Sep 2013, Prague, Czech Republic
Communication dans un congrès hal-00903450 v1
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Formal Concept Analysis Applied to Transcriptomic Data

Mehwish Alam , Adrien Coulet , Amedeo Napoli , Malika Smaïl-Tabbone
What can FCA do for Artificial Intelligence (FCA4AI) (ECAI 2012), Aug 2012, Montpellier, France
Communication dans un congrès hal-00760993 v1
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Formal Concept Analysis Applied to Transcriptomic Data

Mehwish Alam , Adrien Coulet , Amedeo Napoli , Malika Smaïl-Tabbone
The Ninth International Conference on Concept Lattices and Their Applications - CLA 2012, Oct 2012, Fuengirola (Málaga), Spain
Communication dans un congrès hal-00761003 v1
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Indexation et intégration de ressources textuelles à l'aide d'ontologies : application au domaine biomédical

Clement Jonquet , Adrien Coulet , Nigam Shah , Mark A. Musen
21èmes Journées Francophones d'Ingénierie des Connaissances (IC 2010), Jun 2010, Nimes, France. pp.271-282
Communication dans un congrès hal-00488419 v1
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NCBO Resource Index: Ontology-Based Search and Mining of Biomedical Resources

Clement Jonquet , Paea Lependu , Sean M. Falconer , Adrien Coulet , Natalya F. Noy et al.
9th International Semantic Web Conference (ISWC 2010), Semantic Web Challenge winner award, Nov 2010, Shangai, China. pp.8
Communication dans un congrès hal-00557982 v1

Integrating heterogeneous relationships extracted from natural language sentences

Adrien Coulet , Russ B Altman , Mark A. Musen , Nigam H. Shah
Bio-ontologies SIG, Co-located with ISMB 2010, Jul 2010, Boston (MA), United States
Communication dans un congrès hal-04892764 v1
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BioPortal: Ontologies and Integrated Data Resources at the Click of the Mouse

Patricia L. Whetzel , Nigam H. Shah , Natalya F. Noy , Benjamin Dai , Michael Dorf et al.
1st International Conference on Biomedical Ontology (ICBO 2009), Poster session, B. Smith, Jul 2009, Buffalo, United States. pp.197
Communication dans un congrès hal-04276312 v1
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Ontology Services for Semantic Applications in Healthcare and Life Sciences

Nigam H. Shah , Natasha F. Noy , Clement Jonquet , Adrien Coulet , Patricia L. Whetzel et al.
AMIA 2009 - American Medical Informatics Association Annual Symposium, Nov 2009, San Francisco, United States. pp.515
Communication dans un congrès hal-04276271 v1

Ontology Refinement through Role Assertion Analysis: Example in Pharmacogenomics

Adrien Coulet , Malika Smail-Tabbone , Amedeo Napoli , Marie-Dominique Devignes
21st International Workshop on Description Logics - DL2008, May 2008, Dresden, Germany
Communication dans un congrès inria-00338677 v1
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Ontology-guided Data Preparation for Discovering Genotype-Phenotype Relationships

Adrien Coulet , Malika Smaïl-Tabbone , Pascale Benlian , Amedeo Napoli , Marie-Dominique Devignes
Network Tools and Applications in Biology: A Semantic Web for Bioinformatics - NETTAB 2007, Jun 2007, Pisa, Italy
Communication dans un congrès inria-00186988 v1

Ontology-driven Data Integration for Pharmacogenomics: Application to Genome Variations

Adrien Coulet , Malika Smaïl-Tabbone , Pascale Benlian , Amedeo Napoli , Marie-Dominique Devignes
Journées Ouvertes : Biologie, Informatique et Mathématiques - JOBIM'06, Centre de Bioinformatique de Bordeaux (CBiB), Jul 2006, Bordeaux/France
Communication dans un congrès inria-00080064 v1
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SNP-Converter: an Ontology-Based solution to Reconcile Heterogeneous SNP Descriptions for Pharmacogenomic Studies

Adrien Coulet , Malika Smaïl-Tabbone , Pascale Benlian , Amedeo Napoli , Marie-Dominique Devignes
3rd International Workshop on Data Integration in the Life Sciences 2006 - DILS'06, Jul 2006, European Bioinformatics Institute (EBI), Hinxton/UK
Communication dans un congrès inria-00080050 v1
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SNP-Ontology for semantic integration of genomic variation data

Adrien Coulet , Malika Smaïl-Tabbone , Pascale Benlian , Amedeo Napoli , Marie-Dominique Devignes
14th Annual International Conference on Intelligent Systems for Molecular Biology - ISMB'06, Aug 2006, Fortaleza/Brésil
Communication dans un congrès inria-00067863 v2
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Suggested Ontology for Pharmacogenomics (SO-Pharm): Modular Construction and Preliminary Testing

Adrien Coulet , Malika Smaïl-Tabbone , Amedeo Napoli , Marie-Dominique Devignes
Proceedings of International Workshop on Knowledge Systems in Bioinformatics - KSinBIT'06, Oct 2006, Montpellier, France
Communication dans un congrès inria-00089824 v1
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Extraction de données pharmacogénomiques à partir d'études cliniques : problématique

Adrien Coulet , Marie-Dominique Devignes , Malika Smaïl-Tabbone
Deuxième atelier sur la "Fouille de données complexes dans un processus d'extraction des connaissances", Jan 2005, Paris/France
Communication dans un congrès inria-00080156 v1
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PGxCorpus and PGxLOD: two shared resources for knowledge management in pharmacogenomics

Pierre Monnin , Joël Legrand , Adrien Coulet
JOBIM 2022 - Journées Ouvertes en Biologie, Informatique et Mathématiques, Jul 2022, Rennes, France. , JOBIM 2022 Proceedings - Posters, Démos
Poster de conférence hal-03754888 v1
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Discovering Subsumption Axioms with Concept Annotation

Pierre Monnin , Amedeo Napoli , Adrien Coulet
BDA 2017 - 33ème Conférence sur la Gestion de Données — Principes, Technologies et Applications, Nov 2017, Nancy, France. Gestion de Données — Principes, Technologies et Applications (BDA 2017)
Poster de conférence hal-01671454 v2
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Mining Linked Open Data: a Case Study with Genes Responsible for Intellectual Disability

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