Adrien Coulet
- Centre Inria de Paris
- Centre de Recherche des Cordeliers (CRC (UMR_S_1138 / U1138))
- Health data- and model- driven Knowledge Acquisition (HeKA)
Publications
Publications
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Clinical Data Goes MEDS? Let's OWL make sense of it17th International SWAT4HCLS Conference, Semantic Web Applications and Tools for Health Care and Life Sciences, Mar 2026, Amsterdam, Netherlands. ⟨10.48550/arXiv.2601.04164⟩ |
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Comparing representations of long clinical texts for the task of patient note-identificationCL4Health@NAACL 2025: Second Workshop on Patient-oriented Language Processing (CL4Health), at NAACL 2025, May 2025, Albuquerque, New Mexico, United States |
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Results of the Ontology Alignment Evaluation Initiative 2025OM 2025 - Ontology Matching 2025, Nov 2025, Nara, Japan |
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Prédiction d'événements cliniques à partir des parcours de soins de patients représentés par des graphes de connaissances temporelsIC 2025 - 36e Journées Francophones d'Ingénierie des Connaissances, AFIA, Jul 2025, Dijon, France |
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Predicting clinical outcomes from patient care pathways represented with temporal knowledge graphsESWC 2025 - 22nd European Semantic Web Conference, Jun 2025, Portorož, Slovenia. pp.282-300, ⟨10.1007/978-3-031-94575-5_16⟩ |
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Comparing NER approaches on French clinical text, with easy-to-reuse pipelinesMIE 2024 - 34th Medical Informatics Europe Conference, Aug 2024, Athens, Greece |
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Des pipelines faciles à réutiliser pour comparer les performances d'outils de reconnaissance d'entités nommées sur les textes cliniques en françaisPFIA 2024 - Journée Santé et IA de la Plate-Forme Intelligence Artificielle, Jul 2024, La Rochelle, France |
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Prompting Large Language Models for Supporting the Differential Diagnosis of AnemiaLLMs4MI 2024 @FLLM 2024 - First International Workshop on Large Language Models Applications in Medical Informatics In conjunction with the The Second International Conference on Foundation and Large Language Models, IEEE, Nov 2024, Dubai, United Arab Emirates |
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Results of the Ontology Alignment Evaluation Initiative 202419. International Workshop on Ontology Matching (OM 2024 collocated with ISWC-2024), Nov 2024, Baltimore, United States. pp.1-34 |
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Representation and comparison of chemotherapy protocols with ChemoKG and graph embeddingsSWAT4HCLS 2024 - 15th International Semantic Web Applications and Tools for Health Care and Life Sciences Conference, Feb 2024, Leiden, Netherlands |
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TAXN: Translate Align Extract Normalize, a multilingual extraction tool for clinical textsMedInfo 2023 – the 19th world congress on Medical and Health Informatics, International Medical Informatics Association (IMIA), Jul 2023, Syndney, Australia |
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Evaluating the Portability of Rheumatoid Arthritis Phenotyping Algorithms: case study on French EHRs33rd Medical Informatics Europe Conference, MIE2023, May 2023, Gothenburg, Sweden. pp.768-772, ⟨10.3233/SHTI230263⟩ |
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Results of the Ontology Alignment Evaluation Initiative 202318. International Workshop on Ontology Matching (OM 2023), Nov 2023, Athènes, Greece. pp.97--139 |
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Exploring Analogical Inference in HealthcareIARML@IJCAI-ECAI’2022: Workshop on the Interactions between Analogical Reasoning and Machine Learning, at IJCAI-ECAI’2022, Jul 2022, Vienna, Austria |
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Combiner plongements de graphes et clustering pour l'alignement de connaissances pharmacogénomiquesSanté & IA 2022 - Journée Santé et Intelligence Artificielle (Evènement affilié à PFIA 2022), Jun 2022, Saint-Etienne, France |
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Matching Pharmacogenomic Knowledge: Particularities, Results, and Perspectives17th International Workshop on Ontology Matching : OM-2022, Oct 2022, Virtual, China |
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An analogy based framework for patient-stay identification in healthcareATA@ICCBR 2022 - Workshop Analogies: from Theory to Applications, Sep 2022, Nancy, France |
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Portabilité des algorithmes de phénotypage: le cas de la polyarthrite rhumatoïde dans le dossier patient informatisé en françaisTAL 2022 - Journée d’étude sur la robustesse des systemes de TAL, ATALA, Nov 2022, Paris, France |
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Using an ontological representation of chemotherapy toxicities for guiding information extraction and integration from EHRsMedinfo 2021 - 18th World Congress on Medical and Health Informatics, Oct 2021, Virtual conference, Australia |
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Expérimentations autour des architectures d'apprentissage par transfert pour l'extraction de relations biomédicalesEGC 2021 - 21ème édition de la conférence "Extraction et Gestion des Connaissances", Jan 2021, Montpellier / Virtuel, France |
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Knowledge-Based Matching of $n$-ary TuplesICCS 2020 - 25th International Conference on Conceptual Structures, Sep 2020, Bolzano / Virtual, Italy. pp.48-56, ⟨10.1007/978-3-030-57855-8_4⟩ |
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Tackling scalability issues in mining path patterns from knowledge graphs: a preliminary studyALGOS 2020 - 1st International Conference on Algebras, Graphs and Ordered Sets, Aug 2020, Nancy, France |
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Creating Fair Models of Atherosclerotic Cardiovascular Disease RiskAIES '19 - Proceedings of the 2019 AAAI/ACM Conference on AI, Ethics, and Society, Jan 2019, Honolulu, United States. pp.271-278, ⟨10.1145/3306618.3314278⟩ |
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Knowledge Reconciliation with Graph Convolutional Networks: Preliminary ResultsDL4KG2019 - Workshop on Deep Learning for Knowledge Graphs, Jun 2019, Portoroz, Slovenia |
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Syntax-based Transfer Learning for the Task of Biomedical Relation ExtractionLOUHI 2018 - The Ninth International Workshop on Health Text Mining and Information Analysis, Oct 2018, Brussels, Belgium |
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Combining Concept Annotation and Pattern Structures for Guiding Ontology MappingFCA4AI@IJCAI2018 - 6th International Workshop "What can FCA do for Artificial Intelligence?", Jul 2018, Stockholm, Sweden |
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Cooperation of bio-ontologies for the classification of genetic intellectual disabilities : a diseasome approachProceedings of the 11th International Conference on Semantic Web Applications and Tools for Healthcare and Life Sciences (SWAT4HCLS 2018), Dec 2018, Antwerp, Belgium |
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Découverte d'associations entre Evénements Indésirables Médicamenteux par les structures de patrons et les ontologiesJournée I.A. et Santé, Jul 2018, Nancy, France |
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Using formal concept analysis for checking the structure of an ontology in LOD: the example of DBpedia23rd International Symposium on Methodologies for Intelligent Systems, ISMIS 2017, Warsaw university of technology, Jun 2017, Warsaw, Poland. pp.674-683, ⟨10.1007/978-3-319-60438-1_66⟩ |
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PGxO: A very lite ontology to reconcile pharmacogenomic knowledge unitsMethods, tools & platforms for Personalized Medicine in the Big Data Era, Oct 2017, Palermo, Italy. ⟨10.7287/peerj.preprints.3140v1⟩ |
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Tree-LSTM and Cross-Corpus Training for Extracting Biomedical Relationships from TextDLPM2017 Workshop - 2nd International Workshop on Deep Learning for Precision Medicine, Sep 2017, Skopje, Macedonia |
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Discovering ADE associations from EHRs using pattern structures and ontologiesPhenotype Day, Bio-Ontologies SIG, ISMB, Jul 2016, Orlando, United States |
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Extraction d'association d'EIM à partir de dossiers patients : expérimentation avec les structures de patrons et les ontologiesDeuxième Atelier sur l'Intelligence Artificielle et la Santé, Jun 2016, Montpellier, France |
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Extracting Disease-Symptom Relationships by Learning Syntactic Patterns from Dependency GraphsBioNLP 15, Association for Computational Linguistics, Jul 2015, Beijing, China. pp.184 |
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Suggesting valid pharmacogenes by mining linked dataSemantic Web Applications and Tools for Life Sciences (SWAT4LS) 2015, Dec 2015, Cambridge, United Kingdom |
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Mining Linked Open Data: A Case Study with Genes Responsible for Intellectual DisabilityData Integration in the Life Sciences - 10th International Conference, DILS 2014, Jul 2014, Lisbon, Portugal. pp.16 - 31, ⟨10.1007/978-3-319-08590-6_2⟩ |
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ILP for Mining Linked Open Data: a biomedical Case StudyThe 24th International Conference on Inductive Logic Programming (ILP 2014), Sep 2014, Nancy, France |
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Learning Subgraph Patterns from text for Extracting Disease–Symptom Relationships1st International Workshop on Interactions between Data Mining and Natural Language Processing, Sep 2014, Nancy, France |
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Using Pattern Structures for Analyzing Ontology-Based Annotations of Biomedical DataInternational Conference on Formal Concept Analysis, May 2013, Dresden, Germany |
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Using pattern structures for analyzing ontology-based annotations of biomedical dataSeptièmes Journées d'Intelligence Artificielle Fondamentale, Jun 2013, Aix-en-Provence, France. pp.97--106 |
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Lattice Based Data Access (LBDA): An Approach for Organizing and Accessing Linked Open Data in BiologyDMoLD'13 - Data Mining on Linked Data Workshop (ECML/PKDD, 2013), Sep 2013, Prague, Czech Republic |
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Formal Concept Analysis Applied to Transcriptomic DataWhat can FCA do for Artificial Intelligence (FCA4AI) (ECAI 2012), Aug 2012, Montpellier, France |
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Formal Concept Analysis Applied to Transcriptomic DataThe Ninth International Conference on Concept Lattices and Their Applications - CLA 2012, Oct 2012, Fuengirola (Málaga), Spain |
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NCBO Resource Index: Ontology-Based Search and Mining of Biomedical Resources9th International Semantic Web Conference (ISWC 2010), Semantic Web Challenge winner award, Nov 2010, Shangai, China. pp.8 |
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Indexation et intégration de ressources textuelles à l'aide d'ontologies : application au domaine biomédical21èmes Journées Francophones d'Ingénierie des Connaissances (IC 2010), Jun 2010, Nimes, France. pp.271-282 |
Integrating heterogeneous relationships extracted from natural language sentencesBio-ontologies SIG, Co-located with ISMB 2010, Jul 2010, Boston (MA), United States |
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BioPortal: Ontologies and Integrated Data Resources at the Click of the Mouse1st International Conference on Biomedical Ontology (ICBO 2009), Poster session, B. Smith, Jul 2009, Buffalo, United States. pp.197 |
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Ontology Services for Semantic Applications in Healthcare and Life SciencesAMIA 2009 - American Medical Informatics Association Annual Symposium, Nov 2009, San Francisco, United States. pp.515 |
Ontology Refinement through Role Assertion Analysis: Example in Pharmacogenomics21st International Workshop on Description Logics - DL2008, May 2008, Dresden, Germany |
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Ontology-guided Data Preparation for Discovering Genotype-Phenotype RelationshipsNetwork Tools and Applications in Biology: A Semantic Web for Bioinformatics - NETTAB 2007, Jun 2007, Pisa, Italy |
Ontology-driven Data Integration for Pharmacogenomics: Application to Genome VariationsJournées Ouvertes : Biologie, Informatique et Mathématiques - JOBIM'06, Centre de Bioinformatique de Bordeaux (CBiB), Jul 2006, Bordeaux/France |
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SNP-Converter: an Ontology-Based solution to Reconcile Heterogeneous SNP Descriptions for Pharmacogenomic Studies3rd International Workshop on Data Integration in the Life Sciences 2006 - DILS'06, Jul 2006, European Bioinformatics Institute (EBI), Hinxton/UK |
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SNP-Ontology for semantic integration of genomic variation data14th Annual International Conference on Intelligent Systems for Molecular Biology - ISMB'06, Aug 2006, Fortaleza/Brésil |
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Suggested Ontology for Pharmacogenomics (SO-Pharm): Modular Construction and Preliminary TestingProceedings of International Workshop on Knowledge Systems in Bioinformatics - KSinBIT'06, Oct 2006, Montpellier, France |
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Extraction de données pharmacogénomiques à partir d'études cliniques : problématiqueDeuxième atelier sur la "Fouille de données complexes dans un processus d'extraction des connaissances", Jan 2005, Paris/France |
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PGxCorpus and PGxLOD: two shared resources for knowledge management in pharmacogenomicsJOBIM 2022 - Journées Ouvertes en Biologie, Informatique et Mathématiques, Jul 2022, Rennes, France. , JOBIM 2022 Proceedings - Posters, Démos |
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Discovering Subsumption Axioms with Concept AnnotationBDA 2017 - 33ème Conférence sur la Gestion de Données — Principes, Technologies et Applications, Nov 2017, Nancy, France. Gestion de Données — Principes, Technologies et Applications (BDA 2017) |
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Mining Linked Open Data: a Case Study with Genes Responsible for Intellectual DisabilityECCB'14 (European Conference on Computational Biology 2014), Sep 2014, Strasbourg, France. , 2014 |
Ontology-based Web Services for Semantic Applications13th Annual Bio-Ontologies SIG Meeting, Poster session, Jul 2010, Boston, United States. |
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Ontology Web Services for Semantic ApplicationsPacific Symposium on Biocomputing (PSB 2010), Poster session, Jan 2010, Waimea, United States. |
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Ontology-based Web Services for Data Annotation and Integration18th International Conference on Intelligent Systems for Molecular Biology (ISMB 2010), Technology track, Jul 2010, Boston, United States. , TT33, 2010 |
Ontology-based knowledge discovery in pharmacogenomics.Hamid R. Arabnia and Quoc-Nam Tran. Software Tools and Algorithms for Biological Systems, 696, Springer, pp.357-66, 2011, Software Tools and Algorithms for Biological Systems, 978-1-4419-7046-6. ⟨10.1007/978-1-4419-7046-6_36⟩ |
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Supporting Diagnosis With Next-Generation Artificial Intelligence2022, ⟨10.1001/jama.2022.2303⟩ |
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Enhancing Clinical Data Warehouses with Provenance and Large File Management: The gitOmmix Approach for Clinical Omics Data2024 |
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Providing Molecular Characterization for Unexplained Adverse Drug Reactions2019 |
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Data-Interlinking: the Seed of Knowledge Reconciliation in Pharmacogenomics2018 |
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Construction et utilisation d'une base de connaissances pharmacogénomique pour l'intégration de données et la découverte de connaissancesInterface homme-machine [cs.HC]. Université Henri Poincaré - Nancy 1, 2008. Français. ⟨NNT : 2008NAN10047⟩ |
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Mises en correspondances de données, textes et connaissances pour la découverte de connaissances biomédicalesBase de données [cs.DB]. Université de Lorraine, 2019 |
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Actes de la journée d’étude sur l’utilisation des LLM à l’hôpitalJournée llm@hopital.fr, Mar 2026, Paris, France. 2026, Journée d'étude ATALA |
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Actes de la journée d'étude sur la Similarité entre Patients, SimPa 20232023 |