
Adrien Coulet
90
Documents
Affiliations actuelles
- Centre Inria de Paris
- Centre de Recherche des Cordeliers (CRC (UMR_S_1138 / U1138))
- Health data- and model- driven Knowledge Acquisition (HeKA)
Identifiants chercheurs
Publications
Publications
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Comparing representations of long clinical texts for the task of patient note-identificationCL4Health@NAACL 2025: Second Workshop on Patient-oriented Language Processing (CL4Health), at NAACL 2025, May 2025, Albuquerque, New Mexico, United States
Communication dans un congrès
hal-05000565
v2
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Comparing NER approaches on French clinical text, with easy-to-reuse pipelinesMIE 2024 - 34th Medical Informatics Europe Conference, Aug 2024, Athens, Greece
Communication dans un congrès
hal-04584688
v1
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Des pipelines faciles à réutiliser pour comparer les performances d'outils de reconnaissance d'entités nommées sur les textes cliniques en françaisPFIA 2024 - Journée Santé et IA de la Plate-Forme Intelligence Artificielle, Jul 2024, La Rochelle, France
Communication dans un congrès
hal-04889682
v1
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Representation and comparison of chemotherapy protocols with ChemoKG and graph embeddingsSWAT4HCLS 2024 - 15th International Semantic Web Applications and Tools for Health Care and Life Sciences Conference, Feb 2024, Leiden, Netherlands
Communication dans un congrès
hal-04455155
v1
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Prompting Large Language Models for Supporting the Differential Diagnosis of AnemiaLLMs4MI 2024 @FLLM 2024 - First International Workshop on Large Language Models Applications in Medical Informatics In conjunction with the The Second International Conference on Foundation and Large Language Models, IEEE, Nov 2024, Dubai, United Arab Emirates
Communication dans un congrès
hal-04695193
v1
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Results of the Ontology Alignment Evaluation Initiative 2024OM 2024 - 19th International Workshop on Ontology Matching (collocated with ISWC-2024), Nov 2024, Baltimore, United States. pp.1-34
Communication dans un congrès
hal-04892635
v1
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TAXN: Translate Align Extract Normalize, a multilingual extraction tool for clinical textsMedInfo 2023 – the 19th world congress on Medical and Health Informatics, International Medical Informatics Association (IMIA), Jul 2023, Syndney, Australia
Communication dans un congrès
hal-04069590
v1
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Evaluating the Portability of Rheumatoid Arthritis Phenotyping Algorithms: case study on French EHRs33rd Medical Informatics Europe Conference, MIE2023, May 2023, Gothenburg, Sweden. pp.768-772, ⟨10.3233/SHTI230263⟩
Communication dans un congrès
hal-04069779
v1
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Results of the Ontology Alignment Evaluation Initiative 202318th International Workshop on Ontology Matching (OM 2023), Nov 2023, Athens, Greece. pp.97--139
Communication dans un congrès
hal-04366893
v1
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Exploring Analogical Inference in HealthcareIARML@IJCAI-ECAI’2022: Workshop on the Interactions between Analogical Reasoning and Machine Learning, at IJCAI-ECAI’2022, Jul 2022, Vienna, Austria
Communication dans un congrès
hal-03955354
v1
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Matching Pharmacogenomic Knowledge: Particularities, Results, and Perspectives17th International Workshop on Ontology Matching : OM-2022, Oct 2022, Virtual, China
Communication dans un congrès
hal-03835712
v1
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Combiner plongements de graphes et clustering pour l'alignement de connaissances pharmacogénomiquesSanté & IA 2022 - Journée Santé et Intelligence Artificielle (Evènement affilié à PFIA 2022), Jun 2022, Saint-Etienne, France
Communication dans un congrès
hal-03754776
v1
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An analogy based framework for patient-stay identification in healthcareATA@ICCBR 2022 - Workshop Analogies: from Theory to Applications, Sep 2022, Nancy, France
Communication dans un congrès
hal-03763772
v1
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Portabilité des algorithmes de phénotypage: le cas de la polyarthrite rhumatoïde dans le dossier patient informatisé en françaisTAL 2022 - Journée d’étude sur la robustesse des systemes de TAL, ATALA, Nov 2022, Paris, France
Communication dans un congrès
hal-04295970
v1
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Using an ontological representation of chemotherapy toxicities for guiding information extraction and integration from EHRsMedinfo 2021 - 18th World Congress on Medical and Health Informatics, Oct 2021, Virtual conference, Australia
Communication dans un congrès
hal-03364585
v1
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Expérimentations autour des architectures d'apprentissage par transfert pour l'extraction de relations biomédicalesEGC 2021 - 21ème édition de la conférence "Extraction et Gestion des Connaissances", Jan 2021, Montpellier / Virtuel, France
Communication dans un congrès
hal-03073601
v1
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Knowledge-Based Matching of $n$-ary TuplesICCS 2020 - 25th International Conference on Conceptual Structures, Sep 2020, Bolzano / Virtual, Italy. pp.48-56, ⟨10.1007/978-3-030-57855-8_4⟩
Communication dans un congrès
hal-02493067
v1
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Tackling scalability issues in mining path patterns from knowledge graphs: a preliminary studyALGOS 2020 - 1st International Conference on Algebras, Graphs and Ordered Sets, Aug 2020, Nancy, France
Communication dans un congrès
hal-02913224
v1
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Creating Fair Models of Atherosclerotic Cardiovascular Disease RiskAIES '19 - Proceedings of the 2019 AAAI/ACM Conference on AI, Ethics, and Society, Jan 2019, Honolulu, United States. pp.271-278, ⟨10.1145/3306618.3314278⟩
Communication dans un congrès
hal-02388730
v1
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Knowledge Reconciliation with Graph Convolutional Networks: Preliminary ResultsDL4KG2019 - Workshop on Deep Learning for Knowledge Graphs, Jun 2019, Portoroz, Slovenia
Communication dans un congrès
hal-02155546
v1
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Syntax-based Transfer Learning for the Task of Biomedical Relation ExtractionLOUHI 2018 - The Ninth International Workshop on Health Text Mining and Information Analysis, Oct 2018, Brussels, Belgium
Communication dans un congrès
hal-01869071
v1
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Combining Concept Annotation and Pattern Structures for Guiding Ontology MappingFCA4AI@IJCAI2018 - 6th International Workshop "What can FCA do for Artificial Intelligence?", Jul 2018, Stockholm, Sweden
Communication dans un congrès
hal-01858391
v1
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Cooperation of bio-ontologies for the classification of genetic intellectual disabilities : a diseasome approachProceedings of the 11th International Conference on Semantic Web Applications and Tools for Healthcare and Life Sciences (SWAT4HCLS 2018), Dec 2018, Antwerp, Belgium
Communication dans un congrès
hal-01925471
v1
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Découverte d'associations entre Evénements Indésirables Médicamenteux par les structures de patrons et les ontologiesJournée I.A. et Santé, Jul 2018, Nancy, France
Communication dans un congrès
hal-01872312
v1
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Using formal concept analysis for checking the structure of an ontology in LOD: the example of DBpedia23rd International Symposium on Methodologies for Intelligent Systems, ISMIS 2017, Warsaw university of technology, Jun 2017, Warsaw, Poland. pp.674-683, ⟨10.1007/978-3-319-60438-1_66⟩
Communication dans un congrès
hal-01511909
v1
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Tree-LSTM and Cross-Corpus Training for Extracting Biomedical Relationships from TextDLPM2017 Workshop - 2nd International Workshop on Deep Learning for Precision Medicine, Sep 2017, Skopje, Macedonia
Communication dans un congrès
hal-01592802
v1
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PGxO: A very lite ontology to reconcile pharmacogenomic knowledge unitsMethods, tools & platforms for Personalized Medicine in the Big Data Era, Oct 2017, Palermo, Italy. ⟨10.7287/peerj.preprints.3140v1⟩
Communication dans un congrès
hal-01593184
v2
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Discovering ADE associations from EHRs using pattern structures and ontologiesPhenotype Day, Bio-Ontologies SIG, ISMB, Jul 2016, Orlando, United States
Communication dans un congrès
hal-01369448
v1
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Extraction d'association d'EIM à partir de dossiers patients : expérimentation avec les structures de patrons et les ontologiesDeuxième Atelier sur l'Intelligence Artificielle et la Santé, Jun 2016, Montpellier, France
Communication dans un congrès
hal-01391172
v1
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Extracting Disease-Symptom Relationships by Learning Syntactic Patterns from Dependency GraphsBioNLP 15, Association for Computational Linguistics, Jul 2015, Beijing, China. pp.184
Communication dans un congrès
hal-01184655
v1
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Suggesting valid pharmacogenes by mining linked dataSemantic Web Applications and Tools for Life Sciences (SWAT4LS) 2015, Dec 2015, Cambridge, United Kingdom
Communication dans un congrès
hal-01239568
v1
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Mining Linked Open Data: A Case Study with Genes Responsible for Intellectual DisabilityData Integration in the Life Sciences - 10th International Conference, DILS 2014, Jul 2014, Lisbon, Portugal. pp.16 - 31, ⟨10.1007/978-3-319-08590-6_2⟩
Communication dans un congrès
hal-01095591
v1
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ILP for Mining Linked Open Data: a biomedical Case StudyThe 24th International Conference on Inductive Logic Programming (ILP 2014), Sep 2014, Nancy, France
Communication dans un congrès
hal-01095597
v1
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Learning Subgraph Patterns from text for Extracting Disease–Symptom Relationships1st International Workshop on Interactions between Data Mining and Natural Language Processing, Sep 2014, Nancy, France
Communication dans un congrès
hal-01095595
v1
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Using Pattern Structures for Analyzing Ontology-Based Annotations of Biomedical DataInternational Conference on Formal Concept Analysis, May 2013, Dresden, Germany
Communication dans un congrès
hal-00880643
v1
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Using pattern structures for analyzing ontology-based annotations of biomedical dataSeptièmes Journées d'Intelligence Artificielle Fondamentale, Jun 2013, Aix-en-Provence, France. pp.97--106
Communication dans un congrès
hal-00922392
v1
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Lattice Based Data Access (LBDA): An Approach for Organizing and Accessing Linked Open Data in BiologyDMoLD'13 - Data Mining on Linked Data Workshop (ECML/PKDD, 2013), Sep 2013, Prague, Czech Republic
Communication dans un congrès
hal-00903450
v1
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Formal Concept Analysis Applied to Transcriptomic DataWhat can FCA do for Artificial Intelligence (FCA4AI) (ECAI 2012), Aug 2012, Montpellier, France
Communication dans un congrès
hal-00760993
v1
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Formal Concept Analysis Applied to Transcriptomic DataThe Ninth International Conference on Concept Lattices and Their Applications - CLA 2012, Oct 2012, Fuengirola (Málaga), Spain
Communication dans un congrès
hal-00761003
v1
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Indexation et intégration de ressources textuelles à l'aide d'ontologies : application au domaine biomédical21èmes Journées Francophones d'Ingénierie des Connaissances (IC 2010), Jun 2010, Nimes, France. pp.271-282
Communication dans un congrès
hal-00488419
v1
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NCBO Resource Index: Ontology-Based Search and Mining of Biomedical Resources9th International Semantic Web Conference (ISWC 2010), Semantic Web Challenge winner award, Nov 2010, Shangai, China. pp.8
Communication dans un congrès
hal-00557982
v1
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Integrating heterogeneous relationships extracted from natural language sentencesBio-ontologies SIG, Co-located with ISMB 2010, Jul 2010, Boston (MA), United States
Communication dans un congrès
hal-04892764
v1
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BioPortal: Ontologies and Integrated Data Resources at the Click of the Mouse1st International Conference on Biomedical Ontology (ICBO 2009), Poster session, B. Smith, Jul 2009, Buffalo, United States. pp.197
Communication dans un congrès
hal-04276312
v1
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Ontology Services for Semantic Applications in Healthcare and Life SciencesAMIA 2009 - American Medical Informatics Association Annual Symposium, Nov 2009, San Francisco, United States. pp.515
Communication dans un congrès
hal-04276271
v1
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Ontology Refinement through Role Assertion Analysis: Example in Pharmacogenomics21st International Workshop on Description Logics - DL2008, May 2008, Dresden, Germany
Communication dans un congrès
inria-00338677
v1
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Ontology-guided Data Preparation for Discovering Genotype-Phenotype RelationshipsNetwork Tools and Applications in Biology: A Semantic Web for Bioinformatics - NETTAB 2007, Jun 2007, Pisa, Italy
Communication dans un congrès
inria-00186988
v1
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Ontology-driven Data Integration for Pharmacogenomics: Application to Genome VariationsJournées Ouvertes : Biologie, Informatique et Mathématiques - JOBIM'06, Centre de Bioinformatique de Bordeaux (CBiB), Jul 2006, Bordeaux/France
Communication dans un congrès
inria-00080064
v1
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SNP-Converter: an Ontology-Based solution to Reconcile Heterogeneous SNP Descriptions for Pharmacogenomic Studies3rd International Workshop on Data Integration in the Life Sciences 2006 - DILS'06, Jul 2006, European Bioinformatics Institute (EBI), Hinxton/UK
Communication dans un congrès
inria-00080050
v1
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SNP-Ontology for semantic integration of genomic variation data14th Annual International Conference on Intelligent Systems for Molecular Biology - ISMB'06, Aug 2006, Fortaleza/Brésil
Communication dans un congrès
inria-00067863
v2
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Suggested Ontology for Pharmacogenomics (SO-Pharm): Modular Construction and Preliminary TestingProceedings of International Workshop on Knowledge Systems in Bioinformatics - KSinBIT'06, Oct 2006, Montpellier, France
Communication dans un congrès
inria-00089824
v1
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Extraction de données pharmacogénomiques à partir d'études cliniques : problématiqueDeuxième atelier sur la "Fouille de données complexes dans un processus d'extraction des connaissances", Jan 2005, Paris/France
Communication dans un congrès
inria-00080156
v1
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PGxCorpus and PGxLOD: two shared resources for knowledge management in pharmacogenomicsJOBIM 2022 - Journées Ouvertes en Biologie, Informatique et Mathématiques, Jul 2022, Rennes, France. , JOBIM 2022 Proceedings - Posters, Démos
Poster de conférence
hal-03754888
v1
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Discovering Subsumption Axioms with Concept AnnotationBDA 2017 - 33ème Conférence sur la Gestion de Données — Principes, Technologies et Applications, Nov 2017, Nancy, France. Gestion de Données — Principes, Technologies et Applications (BDA 2017)
Poster de conférence
hal-01671454
v2
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Mining Linked Open Data: a Case Study with Genes Responsible for Intellectual DisabilityECCB'14 (European Conference on Computational Biology 2014), Sep 2014, Strasbourg, France. , 2014
Poster de conférence
hal-01092800
v1
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Ontology Web Services for Semantic ApplicationsPacific Symposium on Biocomputing (PSB 2010), Poster session, Jan 2010, Waimea, United States.
Poster de conférence
hal-04297858
v1
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Ontology-based Web Services for Data Annotation and Integration18th International Conference on Intelligent Systems for Molecular Biology (ISMB 2010), Technology track, Jul 2010, Boston, United States. , TT33, 2010
Poster de conférence
lirmm-01605892
v1
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Ontology-based knowledge discovery in pharmacogenomics.Hamid R. Arabnia and Quoc-Nam Tran. Software Tools and Algorithms for Biological Systems, 696, Springer, pp.357-66, 2011, Advances in Experimental Medicine and Biology, 978-1-4419-7046-6. ⟨10.1007/978-1-4419-7046-6_36⟩
Chapitre d'ouvrage
inria-00585072
v1
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Supporting Diagnosis With Next-Generation Artificial Intelligence2022, ⟨10.1001/jama.2022.2303⟩
Autre publication scientifique
hal-03700431
v1
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Enhancing Clinical Data Warehouses with Provenance and Large File Management: The gitOmmix Approach for Clinical Omics Data2024
Pré-publication, Document de travail
hal-04687350
v1
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Providing Molecular Characterization for Unexplained Adverse Drug Reactions2019
Pré-publication, Document de travail
hal-02196134
v1
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Data-Interlinking: the Seed of Knowledge Reconciliation in Pharmacogenomics2018
Pré-publication, Document de travail
hal-01955262
v1
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Construction et utilisation d'une base de connaissances pharmacogénomique pour l'intégration de données et la découverte de connaissancesInterface homme-machine [cs.HC]. Université Henri Poincaré - Nancy 1, 2008. Français. ⟨NNT : 2008NAN10047⟩
Thèse
tel-01748450
v2
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Mises en correspondances de données, textes et connaissances pour la découverte de connaissances biomédicalesBase de données [cs.DB]. Université de Lorraine, 2019
HDR
tel-02429926
v2
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Actes de la journée d'étude sur la Similarité entre Patients, SimPa 20232023
Proceedings/Recueil des communications
hal-04080808
v1
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