Davide Degli Esposti

Chargé de Recherche
45
Documents
Affiliation actuelle
  • RiverLy - Fonctionnement des hydrosystèmes (RiverLy)

Compétences

research coordination, data analysis, molecular biology

Publications

Publications

Concomitant investigation of crustacean amphipods lipidome and metabolome during the molting cycle by Zeno SWATH data-independent acquisition coupled with electron activated dissociation and machine learning

Thomas Alexandre Brunet , Yohann Clément , Valentina Calabrese , Jérôme Lemoine , Olivier Geffard et al.
Analytica Chimica Acta, 2024, 1304, pp.342533. ⟨10.1016/j.aca.2024.342533⟩
Article dans une revue hal-04535105 v1

ToF-SIMS imaging shows specific lipophilic vitamin alterations in chronic reprotoxicity caused by the emerging contaminant Pravastatin in Gammarus fossarum.

Tingting Fu , Valentina Calabrese , Anabelle Espeyte , Sarah Bancel , Hervé Quéau et al.
Aquatic Toxicology, 2024, 271, pp.106935. ⟨10.1016/j.aquatox.2024.106935⟩
Article dans une revue hal-04565127 v1
Image document

Editorial trend: adverse outcome pathway (AOP) and computational strategy — towards new perspectives in ecotoxicology

Damien Baudiffier , Karine Audouze , Olivier Armant , Sandrine Frelon , Sandrine Charles et al.
Environmental Science and Pollution Research, 2024, 31 (5), pp.6587-6596. ⟨10.1007/s11356-023-30647-w⟩
Article dans une revue hal-04296774 v1

Electron-activated dissociation (EAD) for the complementary annotation of metabolites and lipids through data-dependent acquisition analysis and feature-based molecular networking, applied to the sentinel amphipod Gammarus fossarum

Valentina Calabrese , Thomas Alexandre Brunet , Davide Degli-Esposti , Arnaud Chaumot , Olivier Geffard et al.
Analytical and Bioanalytical Chemistry, 2024, 416 (12), pp.2893-2911. ⟨10.1007/s00216-024-05232-w⟩
Article dans une revue hal-04507595 v1
Image document

Proteogenomic reconstruction of organ-specific metabolic networks in an environmental sentinel species, the amphipod Gammarus fossarum

Natacha Koenig , Patrice Baa-Puyoulet , Amélie Lafont , Isis Lorenzo-Colina , Vincent Navratil et al.
Comparative Biochemistry and Physiology - Part D: Genomics and Proteomics, 2024, 52, pp.101323. ⟨10.1016/j.cbd.2024.101323⟩
Article dans une revue hal-04704294 v1
Image document

Identification and organ-specific patterns of expression of two metallothioneins in the sentinel species Gammarus fossarum

Davide Degli Esposti , Auréline Lalouette , Karen Gaget , Louveline Lepeule , Zineb Chaabi et al.
Comparative Biochemistry and Physiology. Part B, Biochemistry and Molecular Biology, 2024, 269, pp.110907. ⟨10.1016/j.cbpb.2023.110907⟩
Article dans une revue hal-04704318 v1
Image document

Reproductive Capacity, but not Food Consumption, is Reduced by Continuous Exposure to Typical Genotoxic Stressor γ-Rays in the sentinel species Gammarus fossarum

Sandrine Frelon , Rémi Recoura-Massaquant , Nicolas Dubourg , Laura Garnero , Jean-Marc Bonzom et al.
Environmental Toxicology and Chemistry, 2024, 43 (9), pp.2071-2079. ⟨10.1002/etc.5949⟩
Article dans une revue hal-04867566 v1
Image document

Challenges and perspectives in MS-based omics approaches for ecotoxicology studies: An insight on Gammarids sentinel amphipods

Valentina Calabrese , Arnaud Salvador , Yohann Clément , Thomas Alexandre Brunet , Anabelle Espeyte et al.
Frontiers in Analytical Science, 2023, 3, pp.1118494. ⟨10.3389/frans.2023.1118494⟩
Article dans une revue hal-03986050 v1
Image document

Dynamic Multiple Reaction Monitoring of amphipod Gammarus fossarum caeca expands molecular information for understanding the impact of contaminants

Maxime Leprêtre , Arnaud Chaumot , Rayan Aboud , Nicolas Delorme , Anabelle Espeyte et al.
Science of the Total Environment, 2023, 893, pp.164875. ⟨10.1016/j.scitotenv.2023.164875⟩
Article dans une revue hal-04358369 v1

Acclimation and transgenerational plasticity support increased cadmium tolerance in Gammarus populations exposed to natural metal contamination in headwater streams

Auréline Lalouette , Davide Degli Esposti , Laura Garnero , Maxime Allibert , Lysiane Dherret et al.
Science of the Total Environment, 2023, 903, pp.166216. ⟨10.1016/j.scitotenv.2023.166216⟩
Article dans une revue hal-04371960 v1
Image document

Organ-oriented proteogenomics functional atlas of three aquatic invertebrate sentinel species

Maxime Leprêtre , Davide Degli Esposti , Kevin Sugier , Anabelle Espeyte , Jean-Charles Gaillard et al.
Scientific Data , 2023, 10 (1), pp.643. ⟨10.1038/s41597-023-02545-w⟩
Article dans une revue (data paper) hal-04372093 v1

Development of a multi-omics extraction method for ecotoxicology: investigation of the reproductive cycle of Gammarus fossarum

Julien Faugere , Thomas Alexandre Brunet , Yohann Clément , Anabelle Espeyte , Olivier Geffard et al.
Talanta, 2023, 253, pp.123806. ⟨10.1016/j.talanta.2022.123806⟩
Article dans une revue hal-03773623 v1
Image document

From Extrapolation to Precision Chemical Hazard Assessment: The Ecdysone Receptor Case Study

Raquel Ruivo , João Sousa , Teresa Neuparth , Olivier Geffard , Arnaud Chaumot et al.
Toxics, 2022, 10 (1), pp.8. ⟨10.3390/toxics10010006⟩
Article dans une revue hal-03788309 v1
Image document

Multiple reaction monitoring mass spectrometry for the discovery of environmentally modulated proteins in an aquatic invertebrate sentinel species, Gammarus fossarum

Maxime Leprêtre , Olivier Geffard , Anabelle Espeyte , Julien Faugere , Sophie Ayciriex et al.
Environmental Pollution, 2022, 315, pp.120393. ⟨10.1016/j.envpol.2022.120393⟩
Article dans une revue hal-04045037 v1
Image document

Determination of biomarkers threshold values and illustration of their use for the diagnostic in large-scale freshwater biomonitoring surveys

Maxime Leprêtre , Alain Geffard , Mélissa Palos Ladeiro , Odile Dedourge-Geffard , Elise David et al.
Environmental Sciences Europe , 2022, 34 (1), pp.115. ⟨10.1186/s12302-022-00692-2⟩
Article dans une revue hal-04047998 v1
Image document

Subcellular Distribution of Dietary Methyl-Mercury in Gammarus fossarum and Its Impact on the Amphipod Proteome

Claudia Cosio , Davide Degli-Esposti , Christine Almunia , Véronique Gaillet , Hervé Sartelet et al.
Environmental Science and Technology, 2021, 55 (15), pp.10514 - 10523. ⟨10.1021/acs.est.1c02385⟩
Article dans une revue hal-03376460 v1
Image document

Des bioessais écotoxicologiques in situ pour évaluer les impacts biologiques de la contamination chimique des cours d'eau nationaux : l'expérience du gammare

Arnaud Chaumot , Olivier Perceval , Rémi Recoura-Massaquant , Davide Degli Esposti , Olivier Geffard
Sciences Eaux & Territoires, 2021, 37, pp.88-91. ⟨10.14758/SET-REVUE.2021.4.16⟩
Article dans une revue hal-03601759 v1
Image document

Shotgun lipidomics and mass spectrometry imaging unveil diversity and dynamics in Gammarus fossarum lipid composition

Tingting Fu , Oskar Knittelfelder , Yohann Clément , Eric Testet , Nicolas Elie et al.
iScience, 2021, 24 (2), pp.1-44. ⟨10.1016/j.isci.2021.102115⟩
Article dans une revue hal-03134038 v1

Co-expression network analysis identifies novel molecular pathways associated with cadmium and pyriproxyfen testicular toxicity in Gammarus fossarum

Natacha Koenig , Christine Almunia , Aurore Bonnal-Conduzorgues , Jean Armengaud , Arnaud Chaumot et al.
Aquatic Toxicology, 2021, 235, ⟨10.1016/j.aquatox.2021.105816⟩
Article dans une revue hal-03487859 v1
Image document

In situ isobaric lipid mapping by MALDI-ion mobility separation-mass spectrometry imaging

Tingting Fu , Janina Oetjen , Manuel Chapelle , Alexandre Verdu , Matthias Szesny et al.
Journal of Mass Spectrometry, 2020, 55 (9), pp.e4531. ⟨10.1002/jms.4531⟩
Article dans une revue hal-03113280 v1
Image document

A “Population Dynamics” Perspective on the Delayed Life-History Effects of Environmental Contaminations: An Illustration with a Preliminary Study of Cadmium Transgenerational Effects over Three Generations in the Crustacean Gammarus

Pauline Cribiu , Alain Devaux , Laura Garnero , Khedidja Abbaci , Thérèse Bastide et al.
International Journal of Molecular Sciences, 2020, 21 (13), pp.4704. ⟨10.3390/ijms21134704⟩
Article dans une revue hal-02921628 v1

Proteogenomics‐Guided Evaluation of RNA‐Seq Assembly and Protein Database Construction for Emergent Model Organisms

Yannick Cogne , Duarte Gouveia , Arnaud Chaumot , Davide Degli Esposti , Olivier Geffard et al.
Proteomics, 2020, 20 (10), pp.1-11. ⟨10.1002/pmic.201900261⟩
Article dans une revue hal-02922078 v1
Image document

High-multiplexed monitoring of protein biomarkers in the sentinel Gammarus fossarum by targeted scout-MRM assay, a new vision for ecotoxicoproteomics

Julien Faugère , Duarte Gouveia , Sophie Ayciriex , Arnaud Chaumot , Christine Almunia et al.
Journal of Proteomics, 2020, 226, pp.103901. ⟨10.1016/j.jprot.2020.103901⟩
Article dans une revue hal-02903090 v1
Image document

Combining proteogenomics and metaproteomics for deep taxonomic and functional characterization of microbiomes from a non-sequenced host

Duarte Gouveia , Olivier Pible , Karen Culotta , Virginie Jouffret , Olivier Geffard et al.
npj Biofilms and Microbiomes, 2020, 6 (1), pp.7. ⟨10.1038/s41522-020-0133-2⟩
Article dans une revue hal-02922047 v1
Image document

De novo transcriptomes of 14 gammarid individuals for proteogenomic analysis of seven taxonomic groups

Yannick Cogne , Davide Degli Esposti , O. Pible , D. Gouveia , Adeline François et al.
Scientific Data , 2019, 6 (1), pp.7. ⟨10.1038/s41597-019-0192-5⟩
Article dans une revue (data paper) hal-02610005 v1
Image document

Recommandations d'un collectif franco-suisse d'experts pour une meilleure évaluation de la qualité écotoxicologique des sédiments par l'étude des communautés benthiques

Stéphane Pesce , J.D. Ferrari , C. Bonnineau , C. Casado , L. Apotheloz Perret Gentil et al.
Sciences Eaux & Territoires, 2019, HS, pp.9. ⟨10.14758/SET-REVUE.2019.hs.04⟩
Article dans une revue hal-02609267 v1
Image document

Comparative proteomics in the wild: Accounting for intrapopulation variability improves describing proteome response in a Gammarus pulex field population exposed to cadmium

Yannick Cogne , Christine Almunia , Duarte Gouveia , Olivier Pible , Adeline François et al.
Aquatic Toxicology, 2019, 214, pp.105244. ⟨10.1016/j.aquatox.2019.105244⟩
Article dans une revue hal-02922064 v1
Image document

In vitro transformation of primary human hepatocytes: Epigenetic changes and stemness properties

Floriane Pez , Patricia Gifu , Davide Degli-Esposti , Nadim Fares , Anaïs Lopez et al.
Experimental Cell Research, 2019, 384, pp.111643 -. ⟨10.1016/j.yexcr.2019.111643⟩
Article dans une revue hal-03488431 v1
Image document

The methylome of the celiac intestinal epithelium harbours genotype-independent alterations in the HLA region

Nora Fernandez-Jimenez , Koldo Garcia-Etxebarria , Leticia Plaza-Izurieta , Irati Romero-Garmendia , Amaia Jauregi-Miguel et al.
Scientific Reports, 2019, 9 (1), ⟨10.1038/s41598-018-37746-6⟩
Article dans une revue hal-02983598 v1
Image document

Ecotoxicoproteomics: A decade of progress in our understanding of anthropogenic impact on the environment

Duarte Gouveia , Christine Almunia , Yannick Cogne , Olivier Pible , Davide Degli Esposti et al.
Journal of Proteomics, 2019, 198, pp.66-77. ⟨10.1016/j.jprot.2018.12.001⟩
Article dans une revue hal-02109172 v1
Image document

Co-expression network analysis identifies gonad- and embryo- associated protein modules in the sentinel species Gammarus fossarum

Davide Degli Esposti , Christine Almunia , Marc-Antoine Guery , Natacha Koenig , J. Armengaud et al.
Scientific Reports, 2019, 9 (1), pp.1-10. ⟨10.1038/s41598-019-44203-5⟩
Article dans une revue hal-02622270 v1
Image document

Shotgun proteomics datasets acquired on Gammarus pulex animals sampled from the wild

D. Gouveia , Yannick Cogne , J.C. Gaillard , C. Almunia , O. Pible et al.
Data in Brief, 2019, 27, pp.6. ⟨10.1016/j.dib.2019.104650⟩
Article dans une revue (data paper) hal-02610033 v1
Image document

Digging deeper into the pyriproxyfen-response of the amphipod Gammarus fossarum with a next-generation ultra-high-field Orbitrap analyser: new perspectives for environmental toxicoproteomics

J. Trapp , D. Gouveia , C. Almunia , O. Pible , Davide Degli Esposti et al.
Frontiers in Environmental Science, 2018, 6, 31 p. ⟨10.3389/fenvs.2018.00054⟩
Article dans une revue hal-02074284 v1
Image document

Identification, expression, and endocrine-disruption of three ecdysone-responsive genes in the sentinel species Gammarus fossarum

D. Gouveia , F. Bonneton , C. Almunia , J. Armengaud , H. Queau et al.
Scientific Reports, 2018, 8 (3793), ⟨10.1038/s41598-018-22235-7⟩
Article dans une revue hal-02073105 v1
Image document

Glycogen synthase kinase 3-mediated voltage-dependent anion channel phosphorylation controls outer mitochondrial membrane permeability during lipid accumulation.

Cecile Martel , Maya Allouche , Davide Degli Esposti , Elena Fanelli , Céline Boursier et al.
Hepatology, 2013, 57 (1), pp.93-102. ⟨10.1002/hep.25967⟩
Article dans une revue hal-00734262 v1
Image document

First experimental evidence of peritoneal and pleural mesotheliomas induced by fluoro-edenite fibres present in Etnean volcanic material from Biancavilla (Sicily, Italy)

Morando Soffritti , Franco Minardi , Luciano Bua , Davide Degli Esposti , Fiorella Belpoggi
European Journal of Oncology, 2004
Article dans une revue hal-04359150 v1