Emiliano Ricci

Chargé de Recherches (CRCN, Inserm)
93%
Libre accès
54
Documents
Affiliations actuelles
  • Laboratoire de biologie et modélisation de la cellule (LBMC UMR 5239)
  • Laboratoire de biologie et modélisation de la cellule (LBMC UMR 5239)
Identifiants chercheurs
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Publications

Unveiling conserved HIV-1 open reading frames encoding T cell antigens using ribosome profiling

Lisa Bertrand , Annika Nelde , Bertha Cecilia Ramirez , Isabelle Hatin , Hugo Arbes et al.
Nature Communications, 2025, 16 (1), pp.1707. ⟨10.1038/s41467-025-56773-2⟩
Article dans une revue hal-04958976 v1
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Metabolism-dependent secondary effect of anti-MAPK cancer therapy on DNA repair

Fabien Aubé , Nicolas Fontrodona , Laura Guiguettaz , Elodie Vallin , Lucilla Fabbri et al.
NAR Cancer, 2025, 6 (2), pp.e3002696. ⟨10.1093/narcan/zcae019⟩
Article dans une revue hal-04892007 v1

Non-AUG HIV-1 uORF translation elicits specific T cell immune response and regulates viral transcript expression

Emmanuel Labaronne , Didier Décimo , Lisa Bertrand , Laura Guiguettaz , Thibault Sohier et al.
Nature Communications, 2025, 16 (1), pp.1706. ⟨10.1038/s41467-025-56772-3⟩
Article dans une revue hal-04969834 v1
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Non-AUG HIV-1 uORF translation elicits specific T cell immune response and regulates viral transcript expression

Emmanuel Labaronne , Didier Décimo , Lisa Bertrand , Laura Guiguettaz , Thibault Sohier et al.
Nature Communications, 2025, 16 (1), pp.1706. ⟨10.1038/s41467-025-56772-3⟩
Article dans une revue hal-04958997 v1

Translation-dependent and -independent mRNA decay occur through mutually exclusive pathways defined by ribosome density during T cell activation

Blandine Mercier , Emmanuel Labaronne , David Cluet , Laura Guiguettaz , Nicolas Fontrodona et al.
Genome Research, 2024, 34 (3), pp.394-409. ⟨10.1101/gr.277863.123⟩
Article dans une revue hal-04896591 v1
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SAMD9L acts as an antiviral factor against HIV-1 and primate lentiviruses by restricting viral and cellular translation

Alexandre Legrand , Clara Dahoui , Clément de la Myre Mory , Kodie Noy , Laura Guiguettaz et al.
PLoS Biology, 2024, 22 (7), pp.e3002696. ⟨10.1371/journal.pbio.3002696⟩
Article dans une revue hal-04635756 v1
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Translation-dependent and -independent mRNA decay occur through mutually exclusive pathways defined by ribosome density during T cell activation

Blandine Mercier , Emmanuel Labaronne , David Cluet , Laura Guiguettaz , Nicolas Fontrodona et al.
Genome Research, 2024, 34 (3), pp.394-409. ⟨10.1101/gr.277863.123⟩
Article dans une revue hal-04891852 v1
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Stable structures or PABP1 loading protects cellular and viral RNAs against ISG20-mediated decay

Camille Louvat , Séverine Deymier , Xuan-Nhi Nguyen , Emmanuel Labaronne , Kodie Noy et al.
Life Science Alliance, 2024, 7 (5), pp.e202302233. ⟨10.26508/lsa.202302233⟩
Article dans une revue hal-04609421 v1
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RSL24D1 sustains steady-state ribosome biogenesis and pluripotency translational programs in embryonic stem cells

Sébastien Durand , Marion Bruelle , Fleur Bourdelais , Bigitha Bennychen , Juliana Blin-Gonthier et al.
Nature Communications, 2023, 14 (1), pp.356. ⟨10.1038/s41467-023-36037-7⟩
Article dans une revue hal-04010880 v1

The inflammatory and tumor suppressor SAMD9L acts through a Schlafen-like box to restrict HIV and inhibit cell translation in SAAD/ATXPC

Alexandre Legrand , Clara Dahoui , Clément de la Myre Mory , Clara Loyer , Kodie Noy et al.
BioRxiv, 2023, 119 (35), ⟨10.1101/2023.01.19.524725⟩
Article dans une revue hal-04240383 v1
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Severe COVID-19 patients have impaired plasmacytoid dendritic cell-mediated control of SARS-CoV-2

Manon Venet , Margarida Sa Ribeiro , Elodie Décembre , Alicia Bellomo , Garima Joshi et al.
Nature Communications, 2023, 14 (1), pp.694. ⟨10.1038/s41467-023-36140-9⟩
Article dans une revue hal-04234855 v1

Severe COVID-19 patients have impaired plasmacytoid dendritic cell-mediated control of SARS-CoV-2

Manon Venet , Margarida Sa Ribeiro , Elodie Décembre , Alicia Bellomo , Garima Joshi et al.
Nature Communications, 2023, 14 (1), pp.694. ⟨10.1038/s41467-023-36140-9⟩
Article dans une revue hal-04854649 v1
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The DEAD box RNA helicase DDX42 is an intrinsic inhibitor of positive‐strand RNA viruses

Boris Bonaventure , Antoine Rebendenne , Ana Luiza Chaves Valadão , Mary Arnaud‐arnould , Ségolène Gracias et al.
EMBO Reports, 2022, 23 (11), pp.e54061. ⟨10.15252/embr.202154061⟩
Article dans une revue hal-04807258 v1
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Shaping the Innate Immune Response Through Post-Transcriptional Regulation of Gene Expression Mediated by RNA-Binding Proteins

Anissa Guillemin , Anuj Kumar , Mélanie Wencker , Emiliano P Ricci
Frontiers in Immunology, 2022, 12 (5), pp.e202302233. ⟨10.3389/fimmu.2021.796012⟩
Article dans une revue hal-04892057 v1
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Baboon Envelope Pseudotyped “Nanoblades” Carrying Cas9/gRNA Complexes Allow Efficient Genome Editing in Human T, B, and CD34+ Cells and Knock-in of AAV6-Encoded Donor DNA in CD34+ Cells

Alejandra Gutierrez-Guerrero , Maria Jimena Abrey Recalde , Philippe E Mangeot , Caroline Costa , Ornellie Bernadin et al.
Frontiers in Genome Editing, 2021, 3, ⟨10.3389/fgeed.2021.604371⟩
Article dans une revue hal-04892116 v1
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Loop extrusion as a mechanism for formation of DNA damage repair foci

Coline Arnould , Vincent Rocher , Anne-Laure Finoux , Thomas Clouaire , Kevin Li et al.
Nature, 2021, 590 (7847), pp.660-665. ⟨10.1038/s41586-021-03193-z⟩
Article dans une revue hal-03385752 v1
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Mutant Huntingtin stalls ribosomes and represses protein synthesis in a cellular model of Huntington disease

Mehdi Eshraghi , Pabalu P Karunadharma , Juliana Blin , Neelam Shahani , Emiliano P. Ricci et al.
Nature Communications, 2021, 12 (1), pp.1461. ⟨10.1038/s41467-021-21637-y⟩
Article dans une revue hal-04892103 v1
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Ribosome dynamics and mRNA turnover, a complex relationship under constant cellular scrutiny

Christelle Morris , David Cluet , Emiliano P Ricci
Wiley Interdisciplinary Reviews-RNA, 2021, ⟨10.1002/wrna.1658⟩
Article dans une revue hal-03293983 v1

Loop extrusion as a mechanism for formation of DNA damage repair foci

Coline Arnould , Vincent Rocher , Anne-Laure Finoux , Thomas Clouaire , Kevin Li et al.
Nature, 2021, 590 (7847), pp.660-665. ⟨10.1038/s41586-021-03193-z⟩
Article dans une revue hal-05016942 v1
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Delivery of the Cas9/sgRNA Ribonucleoprotein Complex in Immortalized and Primary Cells via Virus-like Particles ("Nanoblades")

Philippe E Mangeot , Laura Guiguettaz , Thibault J M Sohier , Emiliano P Ricci
Journal of visualized experiments : JoVE, 2021, 169, ⟨10.3791/62245⟩
Article dans une revue hal-04892096 v1
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Ribosomes guide pachytene piRNA formation on long intergenic piRNA precursors

Yu H Sun , Jiang Zhu , Li Huitong Xie , Ziwei Li , Rajyalakshmi Meduri et al.
Nature Cell Biology, 2021, 22 (2), pp.200 - 212. ⟨10.1038/s41556-019-0457-4⟩
Article dans une revue hal-04892140 v1
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Loop extrusion as a mechanism for formation of DNA damage repair foci

Coline Arnould , Vincent Rocher , Anne-Laure Finoux , Thomas Clouaire , Kevin Li et al.
Nature, 2021, 590 (7847), pp.660-665. ⟨10.1038/s41586-021-03193-z⟩
Article dans une revue hal-04951649 v1
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Coupled protein synthesis and ribosome-guided piRNA processing on mRNAs

Yu Sun , Ruoqiao Huiyi Wang , Khai Du , Jiang Zhu , Jihong Zheng et al.
Nature Communications, 2021, 12 (1), pp.5970. ⟨10.1038/s41467-021-26233-8⟩
Article dans une revue hal-04892075 v1
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The long non-coding RNA LUCAT1 is a negative feedback regulator of interferon responses in humans

Shiuli Agarwal , Tim Vierbuchen , Sreya Ghosh , Jennie Chan , Zhaozhao Jiang et al.
Nature Communications, 2020, 11 (1), pp.6348. ⟨10.1038/s41467-020-20165-5⟩
Article dans une revue hal-04892129 v1
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Pseudomonas aeruginosa cleaves the decoding center of Caenorhabditis elegans ribosomes

Alejandro Vasquez-Rifo , Emiliano P. Ricci , Victor Ambros
PLoS Biology, 2020, 18 (12), pp.e3000969. ⟨10.1371/journal.pbio.3000969⟩
Article dans une revue hal-04892152 v1
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The long noncoding RNA CHROME regulates cholesterol homeostasis in primates

Elizabeth J Hennessy , Coen van Solingen , Kaitlyn R Scacalossi , Mireille Ouimet , Milessa S Afonso et al.
Nature Metabolism, 2019, 1 (1), pp.98-110. ⟨10.1038/s42255-018-0004-9⟩
Article dans une revue hal-02444497 v1
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A cohesin/HUSH- and LINC-dependent pathway controls ribosomal DNA double-strand break repair

Aline Marnef , Anne-Laure Finoux , Coline Arnould , Emmanuelle Guillou , Virginie Daburon et al.
Genes and Development, 2019, 33 (17-18), pp.1175-1190. ⟨10.1101/gad.324012.119⟩
Article dans une revue hal-02352375 v1
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System-wide Profiling of RNA-Binding Proteins Uncovers Key Regulators of Virus Infection

Manuel Garcia-Moreno , Marko Noerenberg , Shuai Ni , Aino Järvelin , Esther González-Almela et al.
Molecular Cell, 2019, 74 (1), pp.196-211.e11. ⟨10.1016/j.molcel.2019.01.017⟩
Article dans une revue hal-02444496 v1
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Senataxin homologue Sen1 is required for efficient termination of RNA polymerase III transcription

Julieta Rivosecchi , Marc Larochelle , Camille Teste , Frédéric Grenier , Amélie Malapert et al.
EMBO Journal, 2019, 38 (16), pp.e101955. ⟨10.15252/embj.2019101955⟩
Article dans une revue hal-02346967 v1

Genome editing in primary cells and in vivo using viral-derived Nanoblades loaded with Cas9-sgRNA ribonucleoproteins

Philippe Mangeot , Valérie Risson , Floriane Fusil , Aline Marnef , Emilie Laurent et al.
Nature Communications, 2019, 10 (1), pp.45. ⟨10.1038/s41467-018-07845-z⟩
Article dans une revue hal-04951656 v1
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Staphylococcus aureus Small Colony Variants (SCVs): News From a Chronic Prosthetic Joint Infection

Guilherme Loss , Patrícia Martins Simões , Florent Valour , Marina Farrel Cortês , Luiz Gonzaga et al.
Frontiers in Cellular and Infection Microbiology, 2019, 9, pp.363. ⟨10.3389/fcimb.2019.00363⟩
Article dans une revue hal-02444492 v1
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Genome editing in primary cells and in vivo using viral-derived Nanoblades loaded with Cas9-sgRNA ribonucleoproteins

Philippe Mangeot , Valérie Risson , Floriane Fusil , Aline Marnef , Emilie Laurent et al.
Nature Communications, 2019, 10 (1), pp.45. ⟨10.1038/s41467-018-07845-z⟩
Article dans une revue hal-02351895 v1

PDZ domain-binding motif of Tax sustains T-cell proliferation in HTLV-1-infected humanized mice

Eléonore Pérès , Juliana Blin , Emiliano P. Ricci , Maria Artesi , Vincent Hahaut et al.
PLoS Pathogens, 2018, 14 (3), pp.e1006933. ⟨10.1371/journal.ppat.1006933⟩
Article dans une revue hal-01953695 v1

When mRNA translation meets decay

Alicia A. Bicknell , Emiliano P. Ricci
Biochemical Society Transactions, 2017, 45 (2), pp.339-351. ⟨10.1042/BST20160243⟩
Article dans une revue hal-01909040 v1
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microRNAs stimulate translation initiation mediated by HCV-like IRESes

Chloé Mengardi , Taran Limousin , Emiliano P. Ricci , Ricardo Soto-Rifo , Didier Decimo et al.
Nucleic Acids Research, 2017, 45 (8), pp.4810-4824. ⟨10.1093/nar/gkw1345⟩
Article dans une revue hal-01911526 v1

An intimate look at the viral replication cycle through ribosome profiling

Juliana Blin , Emiliano P. Ricci
Médecine/Sciences, 2016, 32 (10), pp.849-860. ⟨10.1051/medsci/20163210018⟩
Article dans une revue hal-01911479 v1
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A Long Noncoding RNA lincRNA-EPS Acts as a Transcriptional Brake to Restrain Inflammation

Maninjay K Atianand , Wenqian Hu , Ansuman T Satpathy , Ying Shen , Emiliano Ricci et al.
Cell, 2016, 165 (7), pp.1672-1685. ⟨10.1016/j.cell.2016.05.075⟩
Article dans une revue hal-02444498 v1
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Biogenesis and function of tRNA fragments during sperm maturation and fertilization in mammals

Upasna Sharma , C. Conine , Jeremy M Shea , Ana A. Boskovic , Alan G Derr et al.
Science, 2016, 351 (6271), pp.391-396. ⟨10.1126/science.aad6780⟩
Article dans une revue hal-02444484 v1
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Integrative analysis of RNA, translation, and protein levels reveals distinct regulatory variation across humans

Can Cenik , Elif Sarinay Cenik , Gun W. Byeon , Fabian Grubert , Sophie I. Candille et al.
Genome Research, 2015, 25 (11), pp.1610-1621. ⟨10.1101/gr.193342.115⟩
Article dans une revue hal-01911431 v1
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RIPiT-Seq: A high-throughput approach for footprinting RNA:protein complexes

Guramrit Singh , Emiliano P Ricci , Melissa J Moore
Methods, 2014, 65 (3), pp.320-332. ⟨10.1016/j.ymeth.2013.09.013⟩
Article dans une revue hal-02444505 v1
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HIV-2 genomic RNA accumulates in stress granules in the absence of active translation

Ricardo Soto-Rifo , Fernando Valiente-Echeverria , Paulina S. Rubilar , Francisco Garcia-De-Gracia , Emiliano P. Ricci et al.
Nucleic Acids Research, 2014, 42 (20), pp.12861-12875. ⟨10.1093/nar/gku1017⟩
Article dans une revue hal-01911354 v1
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Staufen1 senses overall transcript secondary structure to regulate translation

Emiliano Ricci , Alper Kucukural , Can Cenik , Blandine C. Mercier , Guramrit Singh et al.
Nature Structural and Molecular Biology, 2014, 21 (1), pp.26-35. ⟨10.1038/nsmb.2739⟩
Article dans une revue hal-02444503 v1
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A long noncoding RNA induced by TLRs mediates both activation and repression of immune response genes

Susan Carpenter , Maninjay Atianand , Daniel Aiello , Emiliano Ricci , Pallavi Gandhi et al.
Science, 2013, 341 (6147), pp.789-792. ⟨10.1126/science.1240925⟩
Article dans une revue hal-02444506 v1

miRNA repression of translation in vitro takes place during 43S ribosomal scanning.

Emiliano P Ricci , Taran Limousin , Ricardo Soto-Rifo , Paulina S Rubilar , Didier Decimo et al.
Nucleic Acids Research, 2013, 41 (1), pp.586-98. ⟨10.1093/nar/gks1076⟩
Article dans une revue hal-00965621 v1

Different effects of the TAR structure on HIV-1 and HIV-2 genomic RNA translation.

Ricardo Soto-Rifo , Taran Limousin , Paulina S Rubilar , Emiliano P Ricci , Didier Décimo et al.
Nucleic Acids Research, 2012, 40 (6), pp.2653-67. ⟨10.1093/nar/gkr1093⟩
Article dans une revue hal-00965639 v1

The Andes hantavirus NSs protein is expressed from the viral small mRNA by a leaky scanning mechanism.

Jorge Vera-Otarola , Loretto Solis , Ricardo Soto-Rifo , Emiliano P Ricci , Karla Pino et al.
Journal of Virology, 2012, 86 (4), pp.2176-87. ⟨10.1128/JVI.06223-11⟩
Article dans une revue hal-00965634 v1
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Translation of intronless RNAs is strongly stimulated by the Epstein–Barr virus mRNA export factor EB2

Emiliano Ricci , Fabrice Mure , Henri Gruffat , Didier Decimo , Cahora Medina-Palazon et al.
Nucleic Acids Research, 2009, 37 (15), pp.4932 - 4943. ⟨10.1093/nar/gkp497⟩
Article dans une revue hal-01927972 v1