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Emmanuel Soubies

CNRS researcher at IRIT.
54
Documents
Researcher identifiers

Publications

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Estimation of off-the-grid sparse spikes with over-parametrized projected gradient descent: theory and application

Pierre-Jean Bénard , Yann Traonmilin , Jean-François Aujol , Emmanuel Soubies
Inverse Problems, 2024, 40 (5), ⟨10.1088/1361-6420/ad33e4⟩
Journal articles hal-04220523v1

Surpassing light inhomogeneities in structured‐illumination microscopy with FlexSIM

Emmanuel Soubies , Alejandro Nogueron , Florence Pelletier , Thomas Mangeat , Christophe Leterrier
Journal of Microscopy, 2024, 296 (1), pp.94--106. ⟨10.1111/jmi.13344⟩
Journal articles hal-04650218v1
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Automatic Tuning of Denoising Algorithms Parameters without Ground Truth

Arthur Floquet , Sayantan Dutta , Emmanuel Soubies , Duong-Hung Pham , Denis Kouamé
IEEE Signal Processing Letters, 2024, 31, pp.381 - 385. ⟨10.1109/LSP.2024.3354554⟩
Journal articles hal-04344047v1
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The MLE is a reliable source: sharp performance guarantees for localization problems

Nathanaël Munier , Emmanuel Soubies , Pierre Weiss
Inverse Problems, 2023, ⟨10.1088/1361-6420/ad0dbb⟩
Journal articles hal-03811028v2
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Sphere Refinement in Gap Safe Screening

Cassio F. Dantas , Emmanuel Soubies , Cédric Févotte
IEEE Signal Processing Letters, 2023, 30, p. 608-612. ⟨10.1109/LSP.2023.3277792⟩
Journal articles hal-03891840v2

Leveraging Joint-Diagonalization in Transform-Learning NMF

Sixin Zhang , Emmanuel Soubies , Cédric Févotte
IEEE Transactions on Signal Processing, 2022, ⟨10.1109/TSP.2022.3188177⟩
Journal articles hal-03481041v1
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Optical diffraction tomography from single-molecule localization microscopy

Thanh-An Pham , Emmanuel Soubies , Ferréol Soulez , Michael Unser
Optics Communications, 2021, 499, pp.127290. ⟨10.1016/j.optcom.2021.127290⟩
Journal articles hal-03290069v1
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Direction-of-Arrival Estimation through Exact Continuous l20-Norm Relaxation

Emmanuel Soubies , Adilson Chinatto , Pascal Larzabal , João M T Romano , Laure Blanc-Féraud
IEEE Signal Processing Letters, 2021, 28, pp.16-20. ⟨10.1109/LSP.2020.3042771⟩
Journal articles hal-03047201v1
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Expanding boundaries of Gap Safe screening

Cassio F. Dantas , Emmanuel Soubies , Cédric Févotte
Journal of Machine Learning Research, 2021, 22 (236), pp.1-57
Journal articles hal-03147502v3

Three-Dimensional Optical Diffraction Tomography with Lippmann-Schwinger Model

Thanh-An Pham , Emmanuel Soubies , Ahmed Ayoub , Joowon Lim , Demetri Psaltis
IEEE Transactions on Computational Imaging, 2020, 6 (1), pp.727-738. ⟨10.1109/TCI.2020.2969070⟩
Journal articles hal-02457399v1
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New Insights on the Optimality Conditions of the l2-l0 Minimization Problem

Emmanuel Soubies , Laure Blanc-Féraud , Gilles Aubert
Journal of Mathematical Imaging and Vision, 2020, Special Issue on Memory of Mila Nikolova, 62, pp.808-824. ⟨10.1007/s10851-019-00917-9⟩
Journal articles hal-02144528v2

Joint Angular Refinement and Reconstruction for Single-Particle Cryo-EM

Mona Zehni , Laurène Donati , Emmanuel Soubies , Zhizhen J. Zhao , Michael Unser
IEEE Transactions on Image Processing, 2020, ⟨10.1109/TIP.2020.2984313⟩
Journal articles hal-02516898v1
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On the Identifiability of Transform Learning for Non-negative Matrix Factorization

Sixin Zhang , Emmanuel Soubies , Cédric Févotte
IEEE Signal Processing Letters, 2020, 27, pp.1555 - 1559. ⟨10.1109/LSP.2020.3020431⟩
Journal articles hal-02542653v5

Computational Super-Sectioning for Single-Slice Structured-Illumination Microscopy

Emmanuel Soubies , Michael Unser
IEEE Transactions on Computational Imaging, 2019, 5 (2), pp.240-250. ⟨10.1109/TCI.2018.2887136⟩
Journal articles hal-02428166v1
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The Sliding Frank-Wolfe Algorithm and its Application to Super-Resolution Microscopy

Quentin Denoyelle , Vincent Duval , Gabriel Peyré , Emmanuel Soubies
Inverse Problems, In press, ⟨10.1088/1361-6420/ab2a29⟩
Journal articles hal-01921604v1
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Pocket Guide to Solve Inverse Problems with GlobalBioIm

Emmanuel Soubies , Ferréol Soulez , Michael T. Mccann , Thanh-An Pham , Laurène Donati
Inverse Problems, 2019, 35 (10), pp.104006. ⟨10.1088/1361-6420/ab2ae9⟩
Journal articles hal-02162546v1

Nanometric axial resolution of fibronectin assembly units achieved with an efficient reconstruction approach for multi-angle-TIRF microscopy

Emmanuel Soubies , Agata Radwanska , Dominique Grall , Laure Blanc-Féraud , Ellen van Obberghen-Schilling
Scientific Reports, 2019, 9 (1), ⟨10.1038/s41598-018-36119-3⟩
Journal articles hal-02017844v1
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Versatile reconstruction framework for diffraction tomography with intensity measurements and multiple scattering

Thanh-An Pham , Emmanuel Soubies , Alexandre Goy , Joowon Lim , Ferréol Soulez
Optics Express, 2018, 26 (3), pp.2749-2763. ⟨10.1364/OE.26.002749⟩
Journal articles insu-01690828v1

Efficient inversion of multiple-scattering model for optical diffraction tomography

Emmanuel Soubies , Thanh-An Pham , Michael Unser
Optics Express, 2017, 25 (18), pp.21786. ⟨10.1364/OE.25.021786⟩
Journal articles hal-02428165v1
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A Unified View of Exact Continuous Penalties for l2-l0 Minimization

Emmanuel Soubies , Laure Blanc-Féraud , Gilles Aubert
SIAM Journal on Optimization, 2017, 27 (3), ⟨10.1137/16M1059333⟩
Journal articles hal-01267701v2
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ERRATUM: A Continuous Exact l0 penalty (CEL0) for least squares regularized problem

Emmanuel Soubies , Laure Blanc-Féraud , Gilles Aubert
SIAM Journal on Imaging Sciences, 2016, 9 (1), pp.490-494. ⟨10.1137/15M1038384⟩
Journal articles hal-01267679v1
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A Continuous Exact l0 penalty (CEL0) for least squares regularized problem

Emmanuel Soubies , Laure Blanc-Féraud , Gilles Aubert
SIAM Journal on Imaging Sciences, 2015, 8 (3), pp. 1607-1639 (33 p.). ⟨10.1137/151003714⟩
Journal articles hal-01102492v2
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MAP-informed Unrolled Algorithms for Hyper-parameter Estimation

Pascal Nguyen , Emmanuel Soubies , Caroline Chaux
2023 IEEE International Conference on Image Processing (ICIP), Oct 2023, Kuala Lumpur, Malaysia. pp.2160-2164, ⟨10.1109/ICIP49359.2023.10222154⟩
Conference papers hal-04153083v1
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Deep Unrolling for Nonconvex Robust Principal Component Analysis

Elizabeth Z. C. Tan , Caroline Chaux , Emmanuel Soubies , Vincent y F Tan
IEEE MLSP 2023, Sep 2023, Rome, France. ⟨10.1109/MLSP55844.2023.10285962⟩
Conference papers hal-04160961v1
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Optical Diffraction Tomography Meets Fluorescence Localization Microscopy

Thanh-An Pham , Emmanuel Soubies , Ferréol Soulez , Michael Unser
1st International Symposium on Computational Sensing (ISCS 2023), Jun 2023, Luxembourg, Luxembourg
Conference papers hal-04132428v1
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Algorithmes de visualisation de non-identifiabilité

Nathanaël Munier , Emmanuel Soubies , Pierre Weiss
XXIXème Colloque Francophone de Traitement du Signal et des Images (GRETSI 2023), Groupe de Recherche et d'Etudes de Traitement du Signal et des Images, Aug 2023, Grenoble, France
Conference papers hal-04138308v2
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Dictionary Learning with Statistical Sparsity in the Presence of Noise

Shayan Aziznejad , Emmanuel Soubies , Michael Unser
28th European Signal Processing Conference - EUSIPCO 2020, Jan 2021, Amsterdam, Netherlands. pp.2026-2029
Conference papers hal-02966135v1
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DIFFRACTION TOMOGRAPHY FROM SINGLE-MOLECULE LOCALIZATION MICROSCOPY: NUMERICAL FEASIBILITY

Thanh-An Pham , Emmanuel Soubies , Ferréol Soulez , Michael Unser
IEEE 18th International Symposium on Biomedical Imaging (ISBI), Apr 2021, Nice (Virtual), France
Conference papers hal-03184774v1
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Safe screening for sparse regression with the Kullback-Leibler divergence

Cassio F. Dantas , Emmanuel Soubies , Cédric Févotte
IEEE International Conference on Acoustics, Speech and Signal Processing (ICASSP), Jun 2021, Toronto (virtual), Canada
Conference papers hal-03147345v2
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Adaptive Regularization for Three-dimensional Optical Diffraction Tomography

Thanh-An Pham , Emmanuel Soubies , Ahmed Ayoub , Demetri Psaltis , Michael Unser
, 2020 IEEE 16th International Symposium on Biomedical Imaging (ISBI), Apr 2020, Iowa City, United States. ⟨10.1109/ISBI45749.2020.9098523⟩
Conference papers hal-02444659v2

User-friendly Building of Reconstruction Algorithms with GlobalBioIm

Laurène Donati , Emmanuel Soubies , Michael Unser
Quantitative BioImaging Conference 2020, Jan 2020, Oxford, United Kingdom
Conference papers hal-02433452v1
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Improving 3D MA-TIRF Reconstruction with Deconvolution and Background Estimation

Emmanuel Soubies , Laure Blanc-Féraud , Sébastien Schaub , Ellen van Obberghen-Schilling
IEEE International Symposium on Biomedical Imaging, Apr 2019, Venise, Italy. ⟨10.1109/ISBI.2019.8759103⟩
Conference papers hal-02017862v1

Joint density map and continuous angular refinement in cryo-electron microscopy

Mona Zehni , Lauréne Donati , Emmanuel Soubies , Zhizhen Zhao , Minh Do
IS&T International Symposium on Electronic Imaging, Jan 2019, Burlingame, United States. pp.133-1-133-5, ⟨10.2352/ISSN.2470-1173.2019.13.COIMG-133⟩
Conference papers hal-02428184v1
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Closed-Form Expression of the Fourier Ring-Correlation for Single-Molecule Localization Microscopy

Thanh-An Pham , Emmanuel Soubies , Daniel Sage , Michael Unser
ISBI 2019 - IEEE International Symposium on Biomedical Imaging, Apr 2019, Venise, Italy
Conference papers hal-02048083v1
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Inner-Loop Free ADMM for Cryo-EM

Lauréne Donati , Emmanuel Soubies , Michael Unser
ISBI 2019 - IEEE International Symposium on Biomedical Imaging, Apr 2019, Venise, Italy
Conference papers hal-02048101v1
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The Sliding Frank-Wolfe Algorithm for the BLASSO

Quentin Denoyelle , Vincent Duval , Gabriel Peyré , Emmanuel Soubies
Workshop on Signal Processing with Adaptative Sparse Structured Representations - SPARS 2019, Sep 2019, Toulouse, France
Conference papers hal-03012568v1
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On the Local Minimizers of the CEL0 Relaxation

Emmanuel Soubies , Laure Blanc-Féraud , Gilles Aubert
SPARS 2019 - Signal Processing with Adaptive Sparse Structured Representations - Workshop, Jul 2019, Toulouse, France
Conference papers hal-02263782v1
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PHASELESS DIFFRACTION TOMOGRAPHY WITH REGULARIZED BEAM PROPAGATION

Thanh-An Pham , Emmanuel Soubies , Joowon Lim , Alexandre Goy , Ferréol Soulez
IEEE International Symposium on Biomedical Imaging (ISBI), 2018, Washington, United States
Conference papers hal-01978525v1
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Quelles relaxations continues pour le critère $l2-l0$ ?

Emmanuel Soubies , Laure Blanc-Féraud , Gilles Aubert
Colloque Gretsi, Sep 2017, Juan-Les-Pins, France. pp.4
Conference papers hal-01560319v1

GlobalBioIm: A Unifying Computational Framework for Solving Inverse Problems

Michael Unser , Emmanuel Soubies , Ferréol Soulez , Michael Mccann , Laurène Donati
OSA Imaging and Applied Optics Congress on Computational Optical Sensing and Imaging (COSI'17), 2017, San Francisco, United States
Conference papers insu-01632807v1
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High density molecule localization for super-resolution microscopy using CEL0 based sparse approximation

Simon Gazagnes , Emmanuel Soubies , Laure Blanc-Féraud
ISBI 2017 - IEEE International Symposium on Biomedical Imaging, Apr 2017, Melbourne, Australia. pp.4, ⟨10.1109/ISBI.2017.7950460⟩
Conference papers hal-01443565v1
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A Framework for Multi-angle Tirf Microscope Calibration

Emmanuel Soubies , Sébastien Schaub , Agata Radwanska , Ellen van Obberghen-Schilling , Laure Blanc-Féraud
ISBI - International Symposium on Biomedical Imaging, Apr 2016, Prague, Czech Republic. pp.4, ⟨10.1109/ISBI.2016.7493355⟩
Conference papers hal-01257736v1

Some results on sparse L2-L0 reconstruction: Continuous Exact L0 penalties

Laure Blanc-Féraud , Emmanuel Soubies , Gilles Aubert
NCMIP 2016 - New Computational Methods for Inverse Problem , ENS Cachan, Apr 2016, Cachan, France
Conference papers hal-01349670v1

Some results on sparse L2-L0 reconstruction: Continuous Exact L0 penalties

Laure Blanc-Féraud , Emmanuel Soubies , Gilles Aubert
Workshop ATLAS on mathematical and algorithmimcal approaches for high dimensional problems in data sciences. , GdR MaDICS, May 2016, Grenoble, France
Conference papers hal-01358112v1
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L0-Optimization for Channel and DOA Sparse Estimation

Adilson Chinatto , Emmanuel Soubies , Cynthia Junqueira , Joâo M. T. Romano , Pascal Larzabal
International Workshop on Computational Advances in Multi-Sensor Adaptive Processing (CAMSAP), Dec 2015, Cancun, Mexico. pp.305-308, ⟨10.1109/CAMSAP.2015.7383797⟩
Conference papers hal-01212042v1
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Seuillage CEL0 pour la minimisation l2- l0 : comparaisons avec IHT

Emmanuel Soubies , Laure Blanc-Féraud , Gilles Aubert
Colloque Gretsi, Sep 2015, Lyon, France. pp.4
Conference papers hal-01169557v1
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CEL0: a continuous alternative to l0 penalty

Emmanuel Soubies , Laure Blanc-Féraud , Gilles Aubert
Signal Processing with Adaptive Sparse Structured Representations (SPARS), Jul 2015, Cambridge, United Kingdom
Conference papers hal-01167192v1
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Cells Detection Using Segmentation Competition

Emmanuelle Poulain , Sylvain Prigent , Emmanuel Soubies , Xavier Descombes
ISBI - International Symposium on Biomedical Imaging, Apr 2015, Brooklyn, United States. ⟨10.1109/ISBI.2015.7164090⟩
Conference papers hal-01113167v1
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Sparse reconstruction from Multiple-Angle Total Internal Reflection Fluorescence Microscopy

Emmanuel Soubies , Laure Blanc-Féraud , Sébastien Schaub , Gilles Aubert
ICIP - International Conference on Image Processing, Oct 2014, Paris, France. pp.2844 - 2848, ⟨10.1109/ICIP.2014.7025575⟩
Conference papers hal-01037895v1
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A 3D model with shape prior information for biological structures reconstruction using Multiple-Angle Total Internal Reflection Fluorescence Microscopy

Emmanuel Soubies , Laure Blanc-Féraud , Sébastien Schaub , Gilles Aubert
ISBI - International Symposium on Biomedical Imaging, Apr 2014, Beijing, China. pp.608 - 611, ⟨10.1109/ISBI.2014.6867944⟩
Conference papers hal-00914998v1
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A 3D segmentation algorithm for ellipsoidal shapes. Application to nuclei extraction.

Emmanuel Soubiès , Pierre Weiss , Xavier Descombes
ICPRAM - International Conference on Pattern Recognition Applications and Methods, Feb 2013, Barcelona, Spain. pp.97-105
Conference papers hal-00733187v1

Graph Cut Based Segmentation of Predefined Shapes: Applications to Biological Imaging

Emmanuel Soubies , Pierre Weiss , Xavier Descombes
Pattern Recognition Applications and Methods., 318, Springer-Verlag, pp.153-170, 2015, Advances in Intelligent Systems and Computing, 978-3-319-12610-4. ⟨10.1007/978-3-319-12610-4_10⟩
Book sections hal-01088384v1