Emmanuel Soubies

CNRS researcher at IRIT.
60
Documents
Current affiliation
  • Signal et Communications (IRIT-SC)
Contact

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Publications

Image document

Estimation of off-the-grid sparse spikes with over-parametrized projected gradient descent: theory and application

Pierre-Jean Bénard , Yann Traonmilin , Jean-François Aujol , Emmanuel Soubies
Inverse Problems, 2024, 40 (5), ⟨10.1088/1361-6420/ad33e4⟩
Journal articles hal-04220523 v1
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Automatic Tuning of Denoising Algorithms Parameters without Ground Truth

Arthur Floquet , Sayantan Dutta , Emmanuel Soubies , Duong-Hung Pham , Denis Kouamé et al.
IEEE Signal Processing Letters, 2024, 31, pp.381 - 385. ⟨10.1109/LSP.2024.3354554⟩
Journal articles hal-04344047 v1

Surpassing light inhomogeneities in structured‐illumination microscopy with FlexSIM

Emmanuel Soubies , Alejandro Nogueron , Florence Pelletier , Thomas Mangeat , Christophe Leterrier et al.
Journal of Microscopy, 2024, 296 (1), pp.94--106. ⟨10.1111/jmi.13344⟩
Journal articles hal-04650218 v1
Image document

The MLE is a reliable source: sharp performance guarantees for localization problems

Nathanaël Munier , Emmanuel Soubies , Pierre Weiss
Inverse Problems, 2023, 40 (1), pp.id.014001. ⟨10.1088/1361-6420/ad0dbb⟩
Journal articles hal-03811028 v2
Image document

Sphere Refinement in Gap Safe Screening

Cassio F. Dantas , Emmanuel Soubies , Cédric Févotte
IEEE Signal Processing Letters, 2023, 30, p. 608-612. ⟨10.1109/LSP.2023.3277792⟩
Journal articles hal-03891840 v2

Leveraging Joint-Diagonalization in Transform-Learning NMF

Sixin Zhang , Emmanuel Soubies , Cédric Févotte
IEEE Transactions on Signal Processing, 2022, ⟨10.1109/TSP.2022.3188177⟩
Journal articles hal-03481041 v1
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Direction-of-Arrival Estimation through Exact Continuous l20-Norm Relaxation

Emmanuel Soubies , Adilson Chinatto , Pascal Larzabal , João M T Romano , Laure Blanc-Féraud
IEEE Signal Processing Letters, 2021, 28, pp.16-20. ⟨10.1109/LSP.2020.3042771⟩
Journal articles hal-03047201 v1
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Expanding boundaries of Gap Safe screening

Cassio F. Dantas , Emmanuel Soubies , Cédric Févotte
Journal of Machine Learning Research, 2021, 22 (236), pp.1-57
Journal articles hal-03147502 v3
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Optical diffraction tomography from single-molecule localization microscopy

Thanh-An Pham , Emmanuel Soubies , Ferréol Soulez , Michael Unser
Optics Communications, 2021, 499, pp.127290. ⟨10.1016/j.optcom.2021.127290⟩
Journal articles hal-03290069 v1
Image document

On the Identifiability of Transform Learning for Non-negative Matrix Factorization

Sixin Zhang , Emmanuel Soubies , Cédric Févotte
IEEE Signal Processing Letters, 2020, 27, pp.1555 - 1559. ⟨10.1109/LSP.2020.3020431⟩
Journal articles hal-02542653 v5

Three-Dimensional Optical Diffraction Tomography with Lippmann-Schwinger Model

Thanh-An Pham , Emmanuel Soubies , Ahmed Ayoub , Joowon Lim , Demetri Psaltis et al.
IEEE Transactions on Computational Imaging, 2020, 6 (1), pp.727-738. ⟨10.1109/TCI.2020.2969070⟩
Journal articles hal-02457399 v1
Image document

New Insights on the Optimality Conditions of the l2-l0 Minimization Problem

Emmanuel Soubies , Laure Blanc-Féraud , Gilles Aubert
Journal of Mathematical Imaging and Vision, 2020, Special Issue on Memory of Mila Nikolova, 62, pp.808-824. ⟨10.1007/s10851-019-00917-9⟩
Journal articles hal-02144528 v2

Joint Angular Refinement and Reconstruction for Single-Particle Cryo-EM

Mona Zehni , Laurène Donati , Emmanuel Soubies , Zhizhen J. Zhao , Michael Unser
IEEE Transactions on Image Processing, 2020, ⟨10.1109/TIP.2020.2984313⟩
Journal articles hal-02516898 v1

Computational Super-Sectioning for Single-Slice Structured-Illumination Microscopy

Emmanuel Soubies , Michael Unser
IEEE Transactions on Computational Imaging, 2019, 5 (2), pp.240-250. ⟨10.1109/TCI.2018.2887136⟩
Journal articles hal-02428166 v1
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Pocket Guide to Solve Inverse Problems with GlobalBioIm

Emmanuel Soubies , Ferréol Soulez , Michael T. Mccann , Thanh-An Pham , Laurène Donati et al.
Inverse Problems, 2019, 35 (10), pp.104006. ⟨10.1088/1361-6420/ab2ae9⟩
Journal articles hal-02162546 v1
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The Sliding Frank-Wolfe Algorithm and its Application to Super-Resolution Microscopy

Quentin Denoyelle , Vincent Duval , Gabriel Peyré , Emmanuel Soubies
Inverse Problems, In press, ⟨10.1088/1361-6420/ab2a29⟩
Journal articles hal-01921604 v1

Nanometric axial resolution of fibronectin assembly units achieved with an efficient reconstruction approach for multi-angle-TIRF microscopy

Emmanuel Soubies , Agata Radwanska , Dominique Grall , Laure Blanc-Féraud , Ellen van Obberghen-Schilling et al.
Scientific Reports, 2019, 9 (1), ⟨10.1038/s41598-018-36119-3⟩
Journal articles hal-02017844 v1
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Versatile reconstruction framework for diffraction tomography with intensity measurements and multiple scattering

Thanh-An Pham , Emmanuel Soubies , Alexandre Goy , Joowon Lim , Ferréol Soulez et al.
Optics Express, 2018, 26 (3), pp.2749-2763. ⟨10.1364/OE.26.002749⟩
Journal articles insu-01690828 v1
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A Unified View of Exact Continuous Penalties for l2-l0 Minimization

Emmanuel Soubies , Laure Blanc-Féraud , Gilles Aubert
SIAM Journal on Optimization, 2017, 27 (3), ⟨10.1137/16M1059333⟩
Journal articles hal-01267701 v2

Efficient inversion of multiple-scattering model for optical diffraction tomography

Emmanuel Soubies , Thanh-An Pham , Michael Unser
Optics Express, 2017, 25 (18), pp.21786. ⟨10.1364/OE.25.021786⟩
Journal articles hal-02428165 v1
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ERRATUM: A Continuous Exact l0 penalty (CEL0) for least squares regularized problem

Emmanuel Soubies , Laure Blanc-Féraud , Gilles Aubert
SIAM Journal on Imaging Sciences, 2016, 9 (1), pp.490-494. ⟨10.1137/15M1038384⟩
Journal articles hal-01267679 v1
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A Continuous Exact l0 penalty (CEL0) for least squares regularized problem

Emmanuel Soubies , Laure Blanc-Féraud , Gilles Aubert
SIAM Journal on Imaging Sciences, 2015, 8 (3), pp. 1607-1639 (33 p.). ⟨10.1137/151003714⟩
Journal articles hal-01102492 v2
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Learning Weighted Least Squares Data Term for Poisson Image Deconvolution

Abhijit Singh , Emmanuel Soubies , Caroline Chaux
IEEE International Conference on Acoustics, Speech and Signal Processing (ICASSP), Apr 2025, Hyderabad, India. ⟨10.1109/ICASSP49660.2025.10888144⟩
Conference papers hal-04887464 v1
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On L0 Bregman-Relaxations for Kullback-Leibler Sparse Regression

Mhamed Essafri , Luca Calatroni , Emmanuel Soubies
MLSP 2024 - IEEE 34th International Workshop on Machine Learning for Signal Processing, Sep 2024, London, United Kingdom. pp.1-6, ⟨10.1109/MLSP58920.2024.10734806⟩
Conference papers hal-04771394 v1
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Algorithmes de visualisation de non-identifiabilité

Nathanaël Munier , Emmanuel Soubies , Pierre Weiss
XXIXème Colloque Francophone de Traitement du Signal et des Images (GRETSI 2023), Groupe de Recherche et d'Etudes de Traitement du Signal et des Images, Aug 2023, Grenoble, France
Conference papers hal-04138308 v2
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Deep Unrolling for Nonconvex Robust Principal Component Analysis

Elizabeth Z. C. Tan , Caroline Chaux , Emmanuel Soubies , Vincent y F Tan
IEEE MLSP 2023, Sep 2023, Rome, France. ⟨10.1109/MLSP55844.2023.10285962⟩
Conference papers hal-04160961 v1
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MAP-informed Unrolled Algorithms for Hyper-parameter Estimation

Pascal Nguyen , Emmanuel Soubies , Caroline Chaux
2023 IEEE International Conference on Image Processing (ICIP), Oct 2023, Kuala Lumpur, Malaysia. pp.2160-2164, ⟨10.1109/ICIP49359.2023.10222154⟩
Conference papers hal-04153083 v1
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Optical Diffraction Tomography Meets Fluorescence Localization Microscopy

Thanh-An Pham , Emmanuel Soubies , Ferréol Soulez , Michael Unser
1st International Symposium on Computational Sensing (ISCS 2023), Jun 2023, Luxembourg, Luxembourg
Conference papers hal-04132428 v1
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Dictionary Learning with Statistical Sparsity in the Presence of Noise

Shayan Aziznejad , Emmanuel Soubies , Michael Unser
28th European Signal Processing Conference - EUSIPCO 2020, Jan 2021, Amsterdam, Netherlands. pp.2026-2029
Conference papers hal-02966135 v1
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DIFFRACTION TOMOGRAPHY FROM SINGLE-MOLECULE LOCALIZATION MICROSCOPY: NUMERICAL FEASIBILITY

Thanh-An Pham , Emmanuel Soubies , Ferréol Soulez , Michael Unser
IEEE 18th International Symposium on Biomedical Imaging (ISBI), Apr 2021, Nice (Virtual), France
Conference papers hal-03184774 v1
Image document

Safe screening for sparse regression with the Kullback-Leibler divergence

Cassio F. Dantas , Emmanuel Soubies , Cédric Févotte
IEEE International Conference on Acoustics, Speech and Signal Processing (ICASSP), Jun 2021, Toronto (virtual), Canada
Conference papers hal-03147345 v2

User-friendly Building of Reconstruction Algorithms with GlobalBioIm

Laurène Donati , Emmanuel Soubies , Michael Unser
Quantitative BioImaging Conference 2020, Jan 2020, Oxford, United Kingdom
Conference papers hal-02433452 v1
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Adaptive Regularization for Three-dimensional Optical Diffraction Tomography

Thanh-An Pham , Emmanuel Soubies , Ahmed Ayoub , Demetri Psaltis , Michael Unser
, 2020 IEEE 16th International Symposium on Biomedical Imaging (ISBI), Apr 2020, Iowa City, United States. ⟨10.1109/ISBI45749.2020.9098523⟩
Conference papers hal-02444659 v2
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The Sliding Frank-Wolfe Algorithm for the BLASSO

Quentin Denoyelle , Vincent Duval , Gabriel Peyré , Emmanuel Soubies
Workshop on Signal Processing with Adaptative Sparse Structured Representations - SPARS 2019, Sep 2019, Toulouse, France
Conference papers hal-03012568 v1
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On the Local Minimizers of the CEL0 Relaxation

Emmanuel Soubies , Laure Blanc-Féraud , Gilles Aubert
SPARS 2019 - Signal Processing with Adaptive Sparse Structured Representations - Workshop, Jul 2019, Toulouse, France
Conference papers hal-02263782 v1

Joint density map and continuous angular refinement in cryo-electron microscopy

Mona Zehni , Lauréne Donati , Emmanuel Soubies , Zhizhen Zhao , Minh Do et al.
IS&T International Symposium on Electronic Imaging, Jan 2019, Burlingame, United States. pp.133-1-133-5, ⟨10.2352/ISSN.2470-1173.2019.13.COIMG-133⟩
Conference papers hal-02428184 v1
Image document

Closed-Form Expression of the Fourier Ring-Correlation for Single-Molecule Localization Microscopy

Thanh-An Pham , Emmanuel Soubies , Daniel Sage , Michael Unser
ISBI 2019 - IEEE International Symposium on Biomedical Imaging, Apr 2019, Venise, Italy
Conference papers hal-02048083 v1
Image document

Improving 3D MA-TIRF Reconstruction with Deconvolution and Background Estimation

Emmanuel Soubies , Laure Blanc-Féraud , Sébastien Schaub , Ellen van Obberghen-Schilling
IEEE International Symposium on Biomedical Imaging, Apr 2019, Venise, Italy. ⟨10.1109/ISBI.2019.8759103⟩
Conference papers hal-02017862 v1
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Inner-Loop Free ADMM for Cryo-EM

Lauréne Donati , Emmanuel Soubies , Michael Unser
ISBI 2019 - IEEE International Symposium on Biomedical Imaging, Apr 2019, Venise, Italy
Conference papers hal-02048101 v1
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PHASELESS DIFFRACTION TOMOGRAPHY WITH REGULARIZED BEAM PROPAGATION

Thanh-An Pham , Emmanuel Soubies , Joowon Lim , Alexandre Goy , Ferréol Soulez et al.
IEEE International Symposium on Biomedical Imaging (ISBI), 2018, Washington, United States
Conference papers hal-01978525 v1
Image document

High density molecule localization for super-resolution microscopy using CEL0 based sparse approximation

Simon Gazagnes , Emmanuel Soubies , Laure Blanc-Féraud
ISBI 2017 - IEEE International Symposium on Biomedical Imaging, Apr 2017, Melbourne, Australia. pp.4, ⟨10.1109/ISBI.2017.7950460⟩
Conference papers hal-01443565 v1

GlobalBioIm: A Unifying Computational Framework for Solving Inverse Problems

Michael Unser , Emmanuel Soubies , Ferréol Soulez , Michael Mccann , Laurène Donati
OSA Imaging and Applied Optics Congress on Computational Optical Sensing and Imaging (COSI'17), 2017, San Francisco, United States
Conference papers insu-01632807 v1
Image document

Quelles relaxations continues pour le critère $l2-l0$ ?

Emmanuel Soubies , Laure Blanc-Féraud , Gilles Aubert
Colloque Gretsi, Sep 2017, Juan-Les-Pins, France. pp.4
Conference papers hal-01560319 v1

Some results on sparse L2-L0 reconstruction: Continuous Exact L0 penalties

Laure Blanc-Féraud , Emmanuel Soubies , Gilles Aubert
NCMIP 2016 - New Computational Methods for Inverse Problem , ENS Cachan, Apr 2016, Cachan, France
Conference papers hal-01349670 v1

Some results on sparse L2-L0 reconstruction: Continuous Exact L0 penalties

Laure Blanc-Féraud , Emmanuel Soubies , Gilles Aubert
Workshop ATLAS on mathematical and algorithmimcal approaches for high dimensional problems in data sciences. , GdR MaDICS, May 2016, Grenoble, France
Conference papers hal-01358112 v1
Image document

A Framework for Multi-angle Tirf Microscope Calibration

Emmanuel Soubies , Sébastien Schaub , Agata Radwanska , Ellen van Obberghen-Schilling , Laure Blanc-Féraud et al.
ISBI - International Symposium on Biomedical Imaging, Apr 2016, Prague, Czech Republic. pp.4, ⟨10.1109/ISBI.2016.7493355⟩
Conference papers hal-01257736 v1
Image document

CEL0: a continuous alternative to l0 penalty

Emmanuel Soubies , Laure Blanc-Féraud , Gilles Aubert
Signal Processing with Adaptive Sparse Structured Representations (SPARS), Jul 2015, Cambridge, United Kingdom
Conference papers hal-01167192 v1
Image document

Cells Detection Using Segmentation Competition

Emmanuelle Poulain , Sylvain Prigent , Emmanuel Soubies , Xavier Descombes
ISBI - International Symposium on Biomedical Imaging, Apr 2015, Brooklyn, United States. ⟨10.1109/ISBI.2015.7164090⟩
Conference papers hal-01113167 v1
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L0-Optimization for Channel and DOA Sparse Estimation

Adilson Chinatto , Emmanuel Soubies , Cynthia Junqueira , Joâo M. T. Romano , Pascal Larzabal et al.
International Workshop on Computational Advances in Multi-Sensor Adaptive Processing (CAMSAP), Dec 2015, Cancun, Mexico. pp.305-308, ⟨10.1109/CAMSAP.2015.7383797⟩
Conference papers hal-01212042 v1
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Seuillage CEL0 pour la minimisation l2- l0 : comparaisons avec IHT

Emmanuel Soubies , Laure Blanc-Féraud , Gilles Aubert
Colloque Gretsi, Sep 2015, Lyon, France. pp.4
Conference papers hal-01169557 v1
Image document

A 3D model with shape prior information for biological structures reconstruction using Multiple-Angle Total Internal Reflection Fluorescence Microscopy

Emmanuel Soubies , Laure Blanc-Féraud , Sébastien Schaub , Gilles Aubert
ISBI - International Symposium on Biomedical Imaging, Apr 2014, Beijing, China. pp.608 - 611, ⟨10.1109/ISBI.2014.6867944⟩
Conference papers hal-00914998 v1
Image document

Sparse reconstruction from Multiple-Angle Total Internal Reflection Fluorescence Microscopy

Emmanuel Soubies , Laure Blanc-Féraud , Sébastien Schaub , Gilles Aubert
ICIP - International Conference on Image Processing, Oct 2014, Paris, France. pp.2844 - 2848, ⟨10.1109/ICIP.2014.7025575⟩
Conference papers hal-01037895 v1
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A 3D segmentation algorithm for ellipsoidal shapes. Application to nuclei extraction.

Emmanuel Soubiès , Pierre Weiss , Xavier Descombes
ICPRAM - International Conference on Pattern Recognition Applications and Methods, Feb 2013, Barcelona, Spain. pp.97-105
Conference papers hal-00733187 v1

Graph Cut Based Segmentation of Predefined Shapes: Applications to Biological Imaging

Emmanuel Soubies , Pierre Weiss , Xavier Descombes
Pattern Recognition Applications and Methods., 318, Springer-Verlag, pp.153-170, 2015, Advances in Intelligent Systems and Computing, 978-3-319-12610-4. ⟨10.1007/978-3-319-12610-4_10⟩
Book sections hal-01088384 v1