Emmanuel Soubies

Chargé de Recherche CNRS à l'IRIT.
68
Documents
Affiliation actuelle
  • Signal et Communications (IRIT-SC)
Contact

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Publications

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Jackpot: Approximating Uncertainty Domains with Adversarial Manifolds

Nathanaël Munier , Emmanuel Soubies , Pierre Weiss

Journal of Machine Learning Research, 2025, 26 (251), pp.1-41

Article dans une revue hal-04744486v2

Exact continuous relaxations of l0-regularized criteria with non-quadratic data terms

M'Hamed Essafri , Luca Calatroni , Emmanuel Soubies

Journal of Global Optimization, 2025, ⟨10.1007/s10898-025-01527-z⟩

Article dans une revue hal-04451909v1
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Convexity in ReLU Neural Networks: beyond ICNNs?

Anne Gagneux , Mathurin Massias , Emmanuel Soubies , Rémi Gribonval

Journal of Mathematical Imaging and Vision, 2025, 67 (4), pp.40. ⟨10.1007/s10851-025-01253-x⟩

Article dans une revue hal-04877619v2
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Spatially Variant Ultrasound Image Restoration with Product Convolution

Arthur Floquet , Emmanuel Soubies , Duong-Hung Pham , Denis Kouamé

IEEE Transactions on Ultrasonics, Ferroelectrics and Frequency Control, 2025, 72 (9), pp.1235 - 1244. ⟨10.1109/TUFFC.2025.3584533⟩

Article dans une revue hal-05051035v3
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Fourier Analysis of Interference Scanning Optical Probe Microscopy

Emmanuel Soubies , Wolfgang Bacsa

IEEE Transactions on Computational Imaging, 2025, 11, pp.1206 - 1216. ⟨10.1109/TCI.2025.3603741⟩

Article dans une revue hal-04969247v2
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Automatic Tuning of Denoising Algorithms Parameters without Ground Truth

Arthur Floquet , Sayantan Dutta , Emmanuel Soubies , Duong-Hung Pham , Denis Kouamé et al.

IEEE Signal Processing Letters, 2024, 31, pp.381 - 385. ⟨10.1109/LSP.2024.3354554⟩

Article dans une revue hal-04344047v1
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Estimation of off-the-grid sparse spikes with over-parametrized projected gradient descent: theory and application

Pierre-Jean Bénard , Yann Traonmilin , Jean-François Aujol , Emmanuel Soubies

Inverse Problems, 2024, 40 (5), ⟨10.1088/1361-6420/ad33e4⟩

Article dans une revue hal-04220523v1

Surpassing light inhomogeneities in structured‐illumination microscopy with FlexSIM

Emmanuel Soubies , Alejandro Nogueron , Florence Pelletier , Thomas Mangeat , Christophe Leterrier et al.

Journal of Microscopy, 2024, 296 (1), pp.94--106. ⟨10.1111/jmi.13344⟩

Article dans une revue hal-04650218v1
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The MLE is a reliable source: sharp performance guarantees for localization problems

Nathanaël Munier , Emmanuel Soubies , Pierre Weiss

Inverse Problems, 2023, 40 (1), pp.id.014001. ⟨10.1088/1361-6420/ad0dbb⟩

Article dans une revue hal-03811028v2
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Sphere Refinement in Gap Safe Screening

Cassio F. Dantas , Emmanuel Soubies , Cédric Févotte

IEEE Signal Processing Letters, 2023, 30, p. 608-612. ⟨10.1109/LSP.2023.3277792⟩

Article dans une revue hal-03891840v2

Leveraging Joint-Diagonalization in Transform-Learning NMF

Sixin Zhang , Emmanuel Soubies , Cédric Févotte

IEEE Transactions on Signal Processing, 2022, ⟨10.1109/TSP.2022.3188177⟩

Article dans une revue hal-03481041v1
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Direction-of-Arrival Estimation through Exact Continuous l20-Norm Relaxation

Emmanuel Soubies , Adilson Chinatto , Pascal Larzabal , João M T Romano , Laure Blanc-Féraud

IEEE Signal Processing Letters, 2021, 28, pp.16-20. ⟨10.1109/LSP.2020.3042771⟩

Article dans une revue hal-03047201v1
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Expanding boundaries of Gap Safe screening

Cassio F. Dantas , Emmanuel Soubies , Cédric Févotte

Journal of Machine Learning Research, 2021, 22 (236), pp.1-57

Article dans une revue hal-03147502v3
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Optical diffraction tomography from single-molecule localization microscopy

Thanh-An Pham , Emmanuel Soubies , Ferréol Soulez , Michael Unser

Optics Communications, 2021, 499, pp.127290. ⟨10.1016/j.optcom.2021.127290⟩

Article dans une revue hal-03290069v1
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On the Identifiability of Transform Learning for Non-negative Matrix Factorization

Sixin Zhang , Emmanuel Soubies , Cédric Févotte

IEEE Signal Processing Letters, 2020, 27, pp.1555 - 1559. ⟨10.1109/LSP.2020.3020431⟩

Article dans une revue hal-02542653v5

Three-Dimensional Optical Diffraction Tomography with Lippmann-Schwinger Model

Thanh-An Pham , Emmanuel Soubies , Ahmed Ayoub , Joowon Lim , Demetri Psaltis et al.

IEEE Transactions on Computational Imaging, 2020, 6 (1), pp.727-738. ⟨10.1109/TCI.2020.2969070⟩

Article dans une revue hal-02457399v1
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New Insights on the Optimality Conditions of the l2-l0 Minimization Problem

Emmanuel Soubies , Laure Blanc-Féraud , Gilles Aubert

Journal of Mathematical Imaging and Vision, 2020, Special Issue on Memory of Mila Nikolova, 62, pp.808-824. ⟨10.1007/s10851-019-00917-9⟩

Article dans une revue hal-02144528v2

Joint Angular Refinement and Reconstruction for Single-Particle Cryo-EM

Mona Zehni , Laurène Donati , Emmanuel Soubies , Zhizhen J. Zhao , Michael Unser

IEEE Transactions on Image Processing, 2020, ⟨10.1109/TIP.2020.2984313⟩

Article dans une revue hal-02516898v1
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Pocket Guide to Solve Inverse Problems with GlobalBioIm

Emmanuel Soubies , Ferréol Soulez , Michael T. Mccann , Thanh-An Pham , Laurène Donati et al.

Inverse Problems, 2019, 35 (10), pp.104006. ⟨10.1088/1361-6420/ab2ae9⟩

Article dans une revue hal-02162546v1

Computational Super-Sectioning for Single-Slice Structured-Illumination Microscopy

Emmanuel Soubies , Michael Unser

IEEE Transactions on Computational Imaging, 2019, 5 (2), pp.240-250. ⟨10.1109/TCI.2018.2887136⟩

Article dans une revue hal-02428166v1

Nanometric axial resolution of fibronectin assembly units achieved with an efficient reconstruction approach for multi-angle-TIRF microscopy

Emmanuel Soubies , Agata Radwanska , Dominique Grall , Laure Blanc-Féraud , Ellen van Obberghen-Schilling et al.

Scientific Reports, 2019, 9 (1), ⟨10.1038/s41598-018-36119-3⟩

Article dans une revue hal-02017844v1
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The Sliding Frank-Wolfe Algorithm and its Application to Super-Resolution Microscopy

Quentin Denoyelle , Vincent Duval , Gabriel Peyré , Emmanuel Soubies

Inverse Problems, In press, ⟨10.1088/1361-6420/ab2a29⟩

Article dans une revue hal-01921604v1
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Versatile reconstruction framework for diffraction tomography with intensity measurements and multiple scattering

Thanh-An Pham , Emmanuel Soubies , Alexandre Goy , Joowon Lim , Ferréol Soulez et al.

Optics Express, 2018, 26 (3), pp.2749-2763. ⟨10.1364/OE.26.002749⟩

Article dans une revue insu-01690828v1
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A Unified View of Exact Continuous Penalties for l2-l0 Minimization

Emmanuel Soubies , Laure Blanc-Féraud , Gilles Aubert

SIAM Journal on Optimization, 2017, 27 (3), ⟨10.1137/16M1059333⟩

Article dans une revue hal-01267701v2

Efficient inversion of multiple-scattering model for optical diffraction tomography

Emmanuel Soubies , Thanh-An Pham , Michael Unser

Optics Express, 2017, 25 (18), pp.21786. ⟨10.1364/OE.25.021786⟩

Article dans une revue hal-02428165v1
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ERRATUM: A Continuous Exact l0 penalty (CEL0) for least squares regularized problem

Emmanuel Soubies , Laure Blanc-Féraud , Gilles Aubert

SIAM Journal on Imaging Sciences, 2016, 9 (1), pp.490-494. ⟨10.1137/15M1038384⟩

Article dans une revue hal-01267679v1
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A Continuous Exact l0 penalty (CEL0) for least squares regularized problem

Emmanuel Soubies , Laure Blanc-Féraud , Gilles Aubert

SIAM Journal on Imaging Sciences, 2015, 8 (3), pp. 1607-1639 (33 p.). ⟨10.1137/151003714⟩

Article dans une revue hal-01102492v2
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Algorithm unrolling for solving inverse problems in signal and image processing

Caroline Chaux , Abhijit Singh , Emmanuel Soubies , Vincent Tan

AI4X, Jul 2025, Singapour, Singapore

Communication dans un congrès hal-05391442v1
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How to improve expressivity of convex ReLU neural networks?

Anne Gagneux , Mathurin Massias , Emmanuel Soubies , Rémi Gribonval

GRETSI 2025 - XXXème Colloque Francophone de Traitement du Signal et des Images, Aug 2025, Strasbourg, France

Communication dans un congrès hal-05216923v1
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Learning Weighted Least Squares Data Term for Poisson Image Deconvolution

Abhijit Singh , Emmanuel Soubies , Caroline Chaux

IEEE International Conference on Acoustics, Speech and Signal Processing (ICASSP), Apr 2025, Hyderabad, India. ⟨10.1109/ICASSP49660.2025.10888144⟩

Communication dans un congrès hal-04887464v1
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Jackpot 2.0 : variété d'incertitude pour les problèmes inverses

Nathanaël Munier , Emmanuel Soubies , Pierre Weiss

XXXe Colloque Francophone de Traitement du Signal et des Images (GRETSI), Aug 2025, Strasbourg, France

Communication dans un congrès hal-05144957v1
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Regularization path via L0 Bregman relaxations

Mhamed Essafri , Luca Calatroni , Emmanuel Soubies

GRETSI, Aug 2025, Strasbourg, France

Communication dans un congrès hal-05184157v1
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Box-constrained L0 Bregman relaxations

Mhamed Essafri , Luca Calatroni , Emmanuel Soubies

European Signal Processing Conference (EUSIPCO), European Association for Signal Processing (EURASIP), Sep 2025, Palerme (Italie), Italy

Communication dans un congrès hal-05114194v1
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On L0 Bregman-Relaxations for Kullback-Leibler Sparse Regression

Mhamed Essafri , Luca Calatroni , Emmanuel Soubies

MLSP 2024 - IEEE 34th International Workshop on Machine Learning for Signal Processing, Sep 2024, London, United Kingdom. pp.1-6, ⟨10.1109/MLSP58920.2024.10734806⟩

Communication dans un congrès hal-04771394v1
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Algorithmes de visualisation de non-identifiabilité

Nathanaël Munier , Emmanuel Soubies , Pierre Weiss

XXIXème Colloque Francophone de Traitement du Signal et des Images (GRETSI 2023), Groupe de Recherche et d'Etudes de Traitement du Signal et des Images, Aug 2023, Grenoble, France

Communication dans un congrès hal-04138308v2
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MAP-informed Unrolled Algorithms for Hyper-parameter Estimation

Pascal Nguyen , Emmanuel Soubies , Caroline Chaux

2023 IEEE International Conference on Image Processing (ICIP), Oct 2023, Kuala Lumpur, Malaysia. pp.2160-2164, ⟨10.1109/ICIP49359.2023.10222154⟩

Communication dans un congrès hal-04153083v1
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Deep Unrolling for Nonconvex Robust Principal Component Analysis

Elizabeth Z. C. Tan , Caroline Chaux , Emmanuel Soubies , Vincent y F Tan

IEEE MLSP 2023, Sep 2023, Rome, France. ⟨10.1109/MLSP55844.2023.10285962⟩

Communication dans un congrès hal-04160961v1
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Optical Diffraction Tomography Meets Fluorescence Localization Microscopy

Thanh-An Pham , Emmanuel Soubies , Ferréol Soulez , Michael Unser

1st International Symposium on Computational Sensing (ISCS 2023), Jun 2023, Luxembourg, Luxembourg

Communication dans un congrès hal-04132428v1
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DIFFRACTION TOMOGRAPHY FROM SINGLE-MOLECULE LOCALIZATION MICROSCOPY: NUMERICAL FEASIBILITY

Thanh-An Pham , Emmanuel Soubies , Ferréol Soulez , Michael Unser

IEEE 18th International Symposium on Biomedical Imaging (ISBI), Apr 2021, Nice (Virtual), France

Communication dans un congrès hal-03184774v1
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Dictionary Learning with Statistical Sparsity in the Presence of Noise

Shayan Aziznejad , Emmanuel Soubies , Michael Unser

28th European Signal Processing Conference - EUSIPCO 2020, Jan 2021, Amsterdam, Netherlands. pp.2026-2029

Communication dans un congrès hal-02966135v1
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Safe screening for sparse regression with the Kullback-Leibler divergence

Cassio F. Dantas , Emmanuel Soubies , Cédric Févotte

IEEE International Conference on Acoustics, Speech and Signal Processing (ICASSP), Jun 2021, Toronto (virtual), Canada

Communication dans un congrès hal-03147345v2

User-friendly Building of Reconstruction Algorithms with GlobalBioIm

Laurène Donati , Emmanuel Soubies , Michael Unser

Quantitative BioImaging Conference 2020, Jan 2020, Oxford, United Kingdom

Communication dans un congrès hal-02433452v1
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Adaptive Regularization for Three-dimensional Optical Diffraction Tomography

Thanh-An Pham , Emmanuel Soubies , Ahmed Ayoub , Demetri Psaltis , Michael Unser

, 2020 IEEE 16th International Symposium on Biomedical Imaging (ISBI), Apr 2020, Iowa City, United States. ⟨10.1109/ISBI45749.2020.9098523⟩

Communication dans un congrès hal-02444659v2
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The Sliding Frank-Wolfe Algorithm for the BLASSO

Quentin Denoyelle , Vincent Duval , Gabriel Peyré , Emmanuel Soubies

Workshop on Signal Processing with Adaptative Sparse Structured Representations - SPARS 2019, Sep 2019, Toulouse, France

Communication dans un congrès hal-03012568v1
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On the Local Minimizers of the CEL0 Relaxation

Emmanuel Soubies , Laure Blanc-Féraud , Gilles Aubert

SPARS 2019 - Signal Processing with Adaptive Sparse Structured Representations - Workshop, Jul 2019, Toulouse, France

Communication dans un congrès hal-02263782v1

Joint density map and continuous angular refinement in cryo-electron microscopy

Mona Zehni , Lauréne Donati , Emmanuel Soubies , Zhizhen Zhao , Minh Do et al.

IS&T International Symposium on Electronic Imaging, Jan 2019, Burlingame, United States. pp.133-1-133-5, ⟨10.2352/ISSN.2470-1173.2019.13.COIMG-133⟩

Communication dans un congrès hal-02428184v1
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Closed-Form Expression of the Fourier Ring-Correlation for Single-Molecule Localization Microscopy

Thanh-An Pham , Emmanuel Soubies , Daniel Sage , Michael Unser

ISBI 2019 - IEEE International Symposium on Biomedical Imaging, Apr 2019, Venise, Italy

Communication dans un congrès hal-02048083v1
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Improving 3D MA-TIRF Reconstruction with Deconvolution and Background Estimation

Emmanuel Soubies , Laure Blanc-Féraud , Sébastien Schaub , Ellen van Obberghen-Schilling

IEEE International Symposium on Biomedical Imaging, Apr 2019, Venise, Italy. ⟨10.1109/ISBI.2019.8759103⟩

Communication dans un congrès hal-02017862v1
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Inner-Loop Free ADMM for Cryo-EM

Lauréne Donati , Emmanuel Soubies , Michael Unser

ISBI 2019 - IEEE International Symposium on Biomedical Imaging, Apr 2019, Venise, Italy

Communication dans un congrès hal-02048101v1
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PHASELESS DIFFRACTION TOMOGRAPHY WITH REGULARIZED BEAM PROPAGATION

Thanh-An Pham , Emmanuel Soubies , Joowon Lim , Alexandre Goy , Ferréol Soulez et al.

IEEE International Symposium on Biomedical Imaging (ISBI), 2018, Washington, United States. ⟨10.1109/isbi.2018.8363802⟩

Communication dans un congrès hal-01978525v1
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High density molecule localization for super-resolution microscopy using CEL0 based sparse approximation

Simon Gazagnes , Emmanuel Soubies , Laure Blanc-Féraud

ISBI 2017 - IEEE International Symposium on Biomedical Imaging, Apr 2017, Melbourne, Australia. pp.4, ⟨10.1109/ISBI.2017.7950460⟩

Communication dans un congrès hal-01443565v1

GlobalBioIm: A Unifying Computational Framework for Solving Inverse Problems

Michael Unser , Emmanuel Soubies , Ferréol Soulez , Michael Mccann , Laurène Donati

OSA Imaging and Applied Optics Congress on Computational Optical Sensing and Imaging (COSI'17), 2017, San Francisco, United States

Communication dans un congrès insu-01632807v1
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Quelles relaxations continues pour le critère $l2-l0$ ?

Emmanuel Soubies , Laure Blanc-Féraud , Gilles Aubert

Colloque Gretsi, Sep 2017, Juan-Les-Pins, France. pp.4

Communication dans un congrès hal-01560319v1

Some results on sparse L2-L0 reconstruction: Continuous Exact L0 penalties

Laure Blanc-Féraud , Emmanuel Soubies , Gilles Aubert

Workshop ATLAS on mathematical and algorithmimcal approaches for high dimensional problems in data sciences. , GdR MaDICS, May 2016, Grenoble, France

Communication dans un congrès hal-01358112v1

Some results on sparse L2-L0 reconstruction: Continuous Exact L0 penalties

Laure Blanc-Féraud , Emmanuel Soubies , Gilles Aubert

NCMIP 2016 - New Computational Methods for Inverse Problem , ENS Cachan, Apr 2016, Cachan, France

Communication dans un congrès hal-01349670v1
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A Framework for Multi-angle Tirf Microscope Calibration

Emmanuel Soubies , Sébastien Schaub , Agata Radwanska , Ellen van Obberghen-Schilling , Laure Blanc-Féraud et al.

ISBI - International Symposium on Biomedical Imaging, Apr 2016, Prague, Czech Republic. pp.4, ⟨10.1109/ISBI.2016.7493355⟩

Communication dans un congrès hal-01257736v1
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CEL0: a continuous alternative to l0 penalty

Emmanuel Soubies , Laure Blanc-Féraud , Gilles Aubert

Signal Processing with Adaptive Sparse Structured Representations (SPARS), Jul 2015, Cambridge, United Kingdom

Communication dans un congrès hal-01167192v1
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Cells Detection Using Segmentation Competition

Emmanuelle Poulain , Sylvain Prigent , Emmanuel Soubies , Xavier Descombes

ISBI - International Symposium on Biomedical Imaging, Apr 2015, Brooklyn, United States. ⟨10.1109/ISBI.2015.7164090⟩

Communication dans un congrès hal-01113167v1
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L0-Optimization for Channel and DOA Sparse Estimation

Adilson Chinatto , Emmanuel Soubies , Cynthia Junqueira , Joâo M. T. Romano , Pascal Larzabal et al.

International Workshop on Computational Advances in Multi-Sensor Adaptive Processing (CAMSAP), Dec 2015, Cancun, Mexico. pp.305-308, ⟨10.1109/CAMSAP.2015.7383797⟩

Communication dans un congrès hal-01212042v1
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Seuillage CEL0 pour la minimisation l2- l0 : comparaisons avec IHT

Emmanuel Soubies , Laure Blanc-Féraud , Gilles Aubert

Colloque Gretsi, Sep 2015, Lyon, France. pp.4

Communication dans un congrès hal-01169557v1
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A 3D model with shape prior information for biological structures reconstruction using Multiple-Angle Total Internal Reflection Fluorescence Microscopy

Emmanuel Soubies , Laure Blanc-Féraud , Sébastien Schaub , Gilles Aubert

ISBI - International Symposium on Biomedical Imaging, Apr 2014, Beijing, China. pp.608 - 611, ⟨10.1109/ISBI.2014.6867944⟩

Communication dans un congrès hal-00914998v1
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Sparse reconstruction from Multiple-Angle Total Internal Reflection Fluorescence Microscopy

Emmanuel Soubies , Laure Blanc-Féraud , Sébastien Schaub , Gilles Aubert

ICIP - International Conference on Image Processing, Oct 2014, Paris, France. pp.2844 - 2848, ⟨10.1109/ICIP.2014.7025575⟩

Communication dans un congrès hal-01037895v1
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A 3D segmentation algorithm for ellipsoidal shapes. Application to nuclei extraction.

Emmanuel Soubiès , Pierre Weiss , Xavier Descombes

ICPRAM - International Conference on Pattern Recognition Applications and Methods, Feb 2013, Barcelona, Spain. pp.97-105

Communication dans un congrès hal-00733187v1
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Exploring instabilities of inverse problem solvers with low-dimensional manifolds

Nathanaël Munier , Emmanuel Soubies , Pierre Weiss

Alemdar Hasanov Hasanoğlu, Roman Novikov, Karel Van Bockstal. Inverse Problems: Modelling and Simulation. Extended Abstracts of the IPMS Conference 2024, Birkhäuser Cham, 2025, 978-3-031-87212-9

Chapitre d'ouvrage hal-04753218v1

Graph Cut Based Segmentation of Predefined Shapes: Applications to Biological Imaging

Emmanuel Soubies , Pierre Weiss , Xavier Descombes

Pattern Recognition Applications and Methods., 318, Springer-Verlag, pp.153-170, 2015, Advances in Intelligent Systems and Computing, 978-3-319-12610-4. ⟨10.1007/978-3-319-12610-4_10⟩

Chapitre d'ouvrage hal-01088384v1