EC

Erwan Corre

Responsable du service Informatique et Bioinformatique de la Station Biologique de Roscoff. Responsable Scientifique de la plateforme ABiMS/IFB. Responsable du projet ciblé BYTESea du PEPR ATLASEA.
134
Documents
Affiliations actuelles
  • Station biologique de Roscoff [Roscoff] (SBR)
  • Fédération de recherche de Roscoff (FR2424)
  • ABiMS - Informatique et bioinformatique = Analysis and Bioinformatics for Marine Science (ABIMS)
  • Institut Français de Bioinformatique (IFB-core)

Présentation

Je suis responsable du Service Informatique et Bio-informatique de la FR2424 de la Station Biologique de Roscoff (SBR) (depuis février 2016) et responsable scientifique de la plateforme ABiMS (Analysis and Bioinformatic for Marine Science)- IFB.

Ce service est composé de 18 personnes (11 IR, 4 IE, 2 AI, 1T dont 7 personnes en CDD en octobre 2025). Mon activité de responsable répond à la double mission de Pilotage stratégique de la plateforme de bioinformatique et supervision de l’informatique de centre, en interface avec les utilisateurs internes et externes à la SBR.

Je suis responsable du travail des deux AI, du T et de l'IE en charge de l’environnement informatique (1800 points réseaux, 35 serveurs, 600 postes de travail, etc.) de la SBR. Je m’assure de la continuité et de la qualité de service et recherche les financements auprès des tutelles et des financeurs institutionnels.

Je pilote une plateforme de bio-informatique proposant une offre complète de services : calcul scientifique, analyse de données, ingénierie logicielle, gestion de données, formation. La plateforme ABiMS (Analysis and Bioinformatics for Marine Science) s'inscrit dans les infrastructures nationales IFB (Institut Français de Bioinformatique) et le pôle mer ODATIS de l'infrastructure DATA TERRA. ABiMS est porteuse ou impliquée dans plusieurs projets d'envergure nationale (BYTE-Sea (PEPR ATLASEA), MUDIS4LS (PIA), AO-EMBRC (PIA), FUTURE-OBS (PPR)) et 5 ANR. J’encadre une équipe d’ingénieurs et je leur donne leurs orientations.

En tant que bio-analyste, j'encadre et je réalise des projets de recherche d'analyse bio-informatique de données scientifiques en collaboration avec des équipes de la Station Biologique de Roscoff mais également avec d’autres équipes françaises et étrangères. Ce travail est valorisé par des publications régulières en tant que co-auteur et plusieurs communications (orales ou posters).

J’assure une veille technologique dans le domaine de la bio-informatique (logiciels, méthodes) et de la génomique (analyses haut débit). J'organise ou participe chaque année à plusieurs actions de formation à l'échelle nationale, régionale ou locale.

Domaines de recherche

Bio-Informatique, Biologie Systémique [q-bio.QM]

Compétences

Bioinformatique Gestion de données Pilotage de projets Biologie Marine

Publications

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Publications

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Establishing the ELIXIR Microbiome Community

Robert D Finn , Bachir Balech , Josephine Burgin , Physilia Chua , Erwan Corre et al.
F1000Research, 2025, 13, pp.50. ⟨10.12688/f1000research.144515.2⟩
Article dans une revue (article de synthèse) hal-04796156 v1

Multiple, diverse endogenous giant virus elements within the genome of a brown alga

Dean Mckeown , Alexandre Cormier , Declan C Schroeder , Arnaud Couloux , Nachida Tadrent et al.
Virus Evolution, 2025, 11 (1), ⟨10.1093/ve/veaf009⟩
Article dans une revue hal-04997831 v1

Transcriptomic analyses reveal sexual cues in reproductive life stages of uncultivated Acantharia (Radiolaria)

Iris Rizos , Sarah Romac , Caroline Juery , Charlotte Berthelier , Johan Decelle et al.
Protist, 2025, 177, pp.126102. ⟨10.1016/j.protis.2025.126102⟩
Article dans une revue hal-05127873 v1
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Transcriptomic responses of Antarctic clam Laternula elliptica to nanoparticles, at single and combined exposures reveal ecologically relevant biomarkers

Rodolfo Rondon , Catalina Valdés , Celine Cosseau , Elisa Bergami , César Antonio Cárdenas et al.
Ecotoxicology and Environmental Safety, 2024, 280, pp.116523. ⟨10.1016/j.ecoenv.2024.116523⟩
Article dans une revue hal-04615510 v1
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Evolutionary genomics of the emergence of brown algae as key components of coastal ecosystems

France Denoeud , Olivier Godfroy , Corinne Cruaud , Svenja Heesch , Zofia Nehr et al.
Cell, 2024, 187 (24), pp.6943-6965. ⟨10.1016/j.cell.2024.10.049⟩
Article dans une revue hal-04794231 v1
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Candidate genes involved in biosynthesis and degradation of the main extracellular matrix polysaccharides of brown algae and their probable evolutionary history

Lisa Mazéas , Ahlem Bouguerba-Collin , J. Mark Cock , France Denoeud , Olivier Godfroy et al.
BMC Genomics, 2024, 25 (1), pp.950. ⟨10.1186/s12864-024-10811-3⟩
Article dans une revue hal-04734202 v1
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Differential global distribution of marine picocyanobacteria gene clusters reveals distinct niche-related adaptive strategies

Hugo Doré , Ulysse Guyet , Jade Leconte , Gregory Farrant , Benjamin Alric et al.
The International Society of Microbiologial Ecology Journal, 2023, 17 (5), pp.720-732. ⟨10.1038/s41396-023-01386-0⟩
Article dans une revue hal-04238382 v2
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SulfAtlas, the sulfatase database: state of the art and new developments

Mark Stam , Pernelle Lelièvre , Mark Hoebeke , Erwan Corre , Tristan Barbeyron et al.
Nucleic Acids Research, 2023, 51 (D1), pp.D647-D653. ⟨10.1093/nar/gkac977⟩
Article dans une revue hal-03948623 v1
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Insights into the potential for mutualistic and harmful host‐microbe interactions affecting brown alga freshwater acclimation

Hetty Kleinjan , Clémence Frioux , Gianmaria Califano , Méziane Aite , Enora Fremy et al.
Molecular Ecology, In press, 32 (3), pp.703-723. ⟨10.1111/mec.16766⟩
Article dans une revue hal-03868898 v1

Expression of 20 SCPP genes during tooth and bone mineralization in Senegal bichir

S Delgado , Ma Fernandez-Trujillo , G Houée , J Silvent , X Liu et al.
Development Genes and Evolution, 2023, ⟨10.1007/s00427-023-00706-w⟩
Article dans une revue hal-04156960 v1
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Coastal rocky reef fish monitoring in the context of the Marine Strategy Framework Directive: Environmental DNA metabarcoding complements underwater visual census

Anaïs Rey , Frédérique Viard , Anne Lizé , Erwan Corre , Alice Valentini et al.
Ocean and Coastal Management, 2023, 241, pp.106625. ⟨10.1016/j.ocecoaman.2023.106625⟩
Article dans une revue hal-04123930 v1

Comparative Population Transcriptomics Provide New Insight into the Evolutionary History and Adaptive Potential of World Ocean Krill

Marvin Choquet , Felix Lenner , Arianna Cocco , Gaëlle Toullec , Erwan Corre et al.
Molecular Biology and Evolution, 2023, 40 (11), ⟨10.1093/molbev/msad225⟩
Article dans une revue (article de synthèse) hal-04707696 v1
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The Rhodoexplorer Platform for Red Algal Genomics and Whole-Genome Assemblies for Several Gracilaria Species

Agnieszka P Lipinska , Stacy A Krueger-Hadfield , Olivier Godfroy , Simon M Dittami , Lígia Ayres-Ostrock et al.
Genome Biology and Evolution, 2023, 15 (7), pp.evad124. ⟨10.1093/gbe/evad124⟩
Article dans une revue hal-04190579 v1
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Comparative Thermophysiology of Marine Synechococcus CRD1 Strains Isolated From Different Thermal Niches in Iron-Depleted Areas

Mathilde Ferrieux , Louison Dufour , Hugo Doré , Morgane Ratin , Audrey Guéneuguès et al.
Frontiers in Microbiology, 2022, 13, pp.893413. ⟨10.3389/fmicb.2022.893413⟩
Article dans une revue hal-03768045 v1
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Structural and functional characterization of orcokinin B-like neuropeptides in the cuttlefish ($Sepia\ officinalis$)

Maxime Endress , Céline Zatylny-Gaudin , Jérôme Leprince , Benjamin Lefranc , Erwan Corre et al.
Marine drugs, 2022, 20 (8), pp.505. ⟨10.3390/md20080505⟩
Article dans une revue hal-03777035 v1
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Genomic patterns of divergence in the early and late steps of speciation of the deep-sea vent thermophilic worms of the genus Alvinella

Camille Thomas-Bulle , Denis Bertrand , Niranjan Nagarajan , Richard R Copley , Erwan Corre et al.
BMC Ecology and Evolution, 2022, 22, pp.106. ⟨10.1186/s12862-022-02057-y⟩
Article dans une revue hal-03770964 v1
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Global Phylogeography of Marine Synechococcus in Coastal Areas Reveals Strong Community Shifts

Hugo Doré , Jade Leconte , Ulysse Guyet , Solène Breton , Gregory Farrant et al.
mSystems, 2022, 7 (6), ⟨10.1128/msystems.00656-22⟩
Article dans une revue hal-03971550 v2
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Recommendations for connecting molecular sequence and biodiversity research infrastructures through ELIXIR

Robert M Waterhouse , Anne-Françoise Adam-Blondon , Donat Agosti , Petr Baldrian , Bachir Balech et al.
F1000Research, 2022, 10, ⟨10.12688/f1000research.73825.1⟩
Article dans une revue hal-04012675 v1
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Immuno-Enzymatic and Proteomic Approaches for Sexing the African Bonytongue (Heterotis niloticus Cuvier, 1829)

N’zi Daniel Koua , Joël Henry , Erwan Corre , Julien Pontin , Benoît Bernay et al.
Fishes, 2022, 7 (3), pp.106. ⟨10.3390/fishes7030106⟩
Article dans une revue hal-03798578 v1
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Inter-Specific Genetic Exchange Despite Strong Divergence in Deep-Sea Hydrothermal Vent Gastropods of the Genus Alviniconcha

Jade Castel , Stéphane Hourdez , Florence Pradillon , Claire Daguin-Thiébaut , Marion Ballenghien et al.
Genes, 2022, 13 (6), pp.985. ⟨10.3390/genes13060985⟩
Article dans une revue hal-03771381 v1
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Recommendations for connecting molecular sequence and biodiversity research infrastructures through ELIXIR

Robert Waterhouse , Anne-Françoise Adam-Blondon , Donat Agosti , Petr Baldrian , Bachir Balech et al.
F1000Research, 2022, 10, pp.1238. ⟨10.12688/f1000research.73825.2⟩
Article dans une revue hal-04506390 v1

Identification of a New Set of Polypeptidic Sex Pheromones from Cuttlefish (Sepia officinalis)

Céline Zatylny-Gaudin , Erwan Corre , Bruno Zanuttini , Maxime Endress , Benoît Bernay et al.
Marine Biotechnology, 2022, 24 (3), pp.574-587. ⟨10.1007/s10126-022-10126-y⟩
Article dans une revue hal-03959186 v1
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High‐throughput sequencing on preservative ethanol is effective at jointly examining infraspecific and taxonomic diversity, although bioinformatics pipelines do not perform equally

Marjorie Couton , Aurélien Baud , Claire Daguin-Thiébaut , Erwan Corre , Thierry Comtet et al.
Ecology and Evolution, 2021, 11 (10), pp.5533 - 5546. ⟨10.1002/ece3.7453⟩
Article dans une revue hal-03235933 v1
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Differential normal skin transcriptomic response in total body irradiated mice exposed to scattered versus scanned proton beams

Alexandre Leduc , Samia Chaouni , Frédéric Pouzoulet , Ludovic de Marzi , Frédérique Megnin-Chanet et al.
Scientific Reports, 2021, 11 (1), pp.5876. ⟨10.1038/s41598-021-85394-0⟩
Article dans une revue hal-03169799 v1
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Rapid protein evolution, organellar reductions, and invasive intronic elements in the marine aerobic parasite dinoflagellate Amoebophrya spp

Sarah Farhat , Phuong Le , Ehsan Kayal , Benjamin Noel , Estelle Bigeard et al.
BMC Biology, 2021, 19 (1), ⟨10.1186/s12915-020-00927-9⟩
Article dans une revue hal-03114990 v1
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High-quality carnivoran genomes from roadkill samples enable comparative species delineation in aardwolf and bat-eared fox

Rémi Allio , Marie-Ka Tilak , Celine Scornavacca , Nico L Avenant , Andrew C Kitchener et al.
eLife, 2021, 10, ⟨10.7554/eLife.63167⟩
Article dans une revue hal-03147106 v1
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Phylogenomic fingerprinting of tempo and functions of horizontal gene transfer within ochrophytes

Richard G Dorrell , Adrien Villain , Benoît Perez-Lamarque , Guillemette Audren de Kerdrel , Giselle Mccallum et al.
Proceedings of the National Academy of Sciences of the United States of America, 2021, 118 (4), ⟨10.1073/pnas.2009974118/-/DCSupplemental⟩
Article dans une revue mnhn-03969507 v1
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Cyanorak v2.1: a scalable information system dedicated to the visualization and expert curation of marine and brackish picocyanobacteria genomes

Laurence Garczarek , Ulysse Guyet , Hugo Doré , Gregory Farrant , Mark Hoebeke et al.
Nucleic Acids Research, 2021, 49 (D1), pp.D667-D676. ⟨10.1093/nar/gkaa958⟩
Article dans une revue hal-02988562 v1

Different Early Responses of Laminariales to an Endophytic Infection Provide Insights About Kelp Host Specificity

Qikun Xing , Miriam Bernard , Sylvie Rousvoal , Erwan Corre , Gabriel Markov et al.
Frontiers in Marine Science, 2021, 8, ⟨10.3389/fmars.2021.742469⟩
Article dans une revue hal-03454704 v1
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Marine Synechococcus Picocyanobacteria: Light Utilization Across Latitudes

Christophe Six , Morgane Ratin , Dominique Marie , Erwan Corre
Proceedings of the National Academy of Sciences of the United States of America, 2021, 118 (38), pp.e2111300118. ⟨10.1073/pnas.2111300118⟩
Article dans une revue hal-03360215 v1
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Marine Transcriptomics Analysis for the Identification of New Antimicrobial Peptides

Baptiste Houyvet , Yolande Bouchon-Navaro , Claude Bouchon , Erwan Corre , Céline Zatylny-Gaudin
Marine drugs, 2021, 19 (9), pp.490. ⟨10.3390/md19090490⟩
Article dans une revue hal-03329592 v1
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Low Transcriptomic Plasticity of Antarctic Giant Isopod Glyptonotus antarcticus Juveniles Exposed to Acute Thermal Stress

Marcelo González-Aravena , Rodolfo Rondon , Alejandro Font , César A Cárdenas , Jean-Yves Toullec et al.
Frontiers in Marine Science, 2021, 8, pp.761866. ⟨10.3389/fmars.2021.761866⟩
Article dans une revue hal-03901946 v1
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Zobellia roscoffensis sp. nov. and Zobellia nedashkovskayae sp. nov., two flavobacteria from the epiphytic microbiota of the brown alga Ascophyllum nodosum, and emended description of the genus Zobellia

Tristan Barbeyron , Manon Thiébaud , Nolwen Le Duff , Marjolaine Martin , Erwan Corre et al.
International Journal of Systematic and Evolutionary Microbiology, 2021, 71 (8), pp.004913. ⟨10.1099/ijsem.0.004913⟩
Article dans une revue hal-03357314 v1
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Robustness analysis of metabolic predictions in algal microbial communities based on different annotation pipelines

Elham Karimi , Enora Geslain , Arnaud Belcour , Clémence Frioux , Méziane Aite et al.
PeerJ, 2021, 9, pp.1-24. ⟨10.7717/peerj.11344⟩
Article dans une revue hal-03223662 v1
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Comparative genomics applied to Mucor species with different lifestyles

Annie Lebreton , Erwan Corre , Jean-Luc Jany , Loraine Brillet-Guéguen , Carlos Pèrez-Arques et al.
BMC Genomics, 2020, 21 (1), pp.135. ⟨10.1186/s12864-019-6256-2⟩
Article dans une revue hal-02481326 v1
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Methanohalophilus profundi sp. nov., a methylotrophic halophilic piezophilic methanogen isolated from a deep hypersaline anoxic basin

Stéphane L'Haridon , Hani Haroun , Erwan Corre , Erwan Roussel , Morgane Chalopin et al.
Systematic and Applied Microbiology, 2020, 43 (5), pp.126107. ⟨10.1016/j.syapm.2020.126107⟩
Article dans une revue pasteur-03260922 v1
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Dinoflagellate Host Chloroplasts and Mitochondria Remain Functional During Amoebophrya Infection

Ehsan Kayal , Catharina Alves-De-Souza , Sarah Farhat , Lourdes Velo-Suarez , Joanne Monjol et al.
Frontiers in Microbiology, 2020, 11, pp.600823. ⟨10.3389/fmicb.2020.600823⟩
Article dans une revue hal-03146011 v1
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Response of Downy Oak (Quercus pubescens Willd.) to Climate Change: Transcriptome Assembly, Differential Gene Analysis and Targeted Metabolomics

Jean-Philippe Mévy , Béatrice B. Loriod , Xi Liu , Erwan Corre , Magali Torres et al.
Plants, 2020, 9 (9), pp.1149. ⟨10.3390/plants9091149⟩
Article dans une revue hal-02945417 v1
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Synergic Effects of Temperature and Irradiance on the Physiology of the Marine Synechococcus Strain WH7803

Ulysse Guyet , Ngoc Thanh Nguyen , Hugo Doré , Julie Haguait , Justine Pittera et al.
Frontiers in Microbiology, 2020, 11, ⟨10.3389/fmicb.2020.01707⟩
Article dans une revue hal-02929424 v1
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Alterocin, an Antibiofilm Protein Secreted by Pseudoalteromonas sp. Strain 3J6

Albane Jouault , Angélique Gobet , Marjolaine Simon , Emilie Portier , Morgan Perennou et al.
Applied and Environmental Microbiology, 2020, 86 (20), pp.e00893-20. ⟨10.1128/AEM.00893-20⟩
Article dans une revue hal-03027967 v1
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Identification and structural characterization of the factors involved in vitellogenesis and its regulation in the African Osteoglossiforme of aquacultural interest Heterotis niloticus (Cuvier, 1829)

N'Zi Daniel Koua , Jesús Núñez-Rodríguez , Julie Orjuela , Céline Zatylny-Gaudin , Marie-Pierre Dubos et al.
General and Comparative Endocrinology, 2020, pp.113532. ⟨10.1016/j.ygcen.2020.113532⟩
Article dans une revue hal-02867550 v1
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Metabolic Complementarity Between a Brown Alga and Associated Cultivable Bacteria Provide Indications of Beneficial Interactions

Bertille Burgunter-Delamare , Hetty Kleinjan , Clémence Frioux , Enora Fremy , Margot Wagner et al.
Frontiers in Marine Science, 2020, 7, pp.1-11. ⟨10.3389/fmars.2020.00085⟩
Article dans une revue hal-02866101 v2
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In-Depth In Silico Search for Cuttlefish (Sepia officinalis) Antimicrobial Peptides Following Bacterial Challenge of Haemocytes

Louis Benoist , Baptiste Houyvet , Joël Henry , Erwan Corre , Bruno Zanuttini et al.
Marine drugs, 2020, 18 (9), pp.439. ⟨10.3390/md18090439⟩
Article dans une revue hal-02965337 v1
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Development of a relevant strategy using de novo transcriptome assembly method for transcriptome comparisons between Muscovy and common duck species and their reciprocal inter-specific mule and hinny hybrids fed ad libitum and overfed

Xi Liu , Frédéric Herault , Christian Diot , Erwan Corre
BMC Genomics, 2020, 21, ⟨10.1186/s12864-020-07099-4⟩
Article dans une revue hal-02956381 v1
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Deciphering the Infectious Process of Colletotrichum lupini in Lupin through Transcriptomic and Proteomic Analysis

Guillaume Dubrulle , Adeline Picot , Stéphanie Madec , Erwan Corre , Audrey Pawtowski et al.
Microorganisms, 2020, 8 (10), pp.1621. ⟨10.3390/microorganisms8101621⟩
Article dans une revue hal-03009610 v1
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Cryptic species in the parasitic Amoebophrya species complex revealed by a polyphasic approach

Ruibo Cai , Ehsan Kayal , Catharina Alves-De-Souza , Estelle Bigeard , Erwan Corre et al.
Scientific Reports, 2020, ⟨10.1038/s41598-020-59524-z⟩
Article dans une revue hal-02377799 v2
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Transcriptomic Responses to Darkness and the Survival Strategy of the Kelp Saccharina latissima in the Early Polar Night

Huiru Li , Lydia Scheschonk , Sandra Heinrich , Klaus Valentin , Lars Harms et al.
Frontiers in Marine Science, 2020, 7, pp.592033. ⟨10.3389/fmars.2020.592033⟩
Article dans une revue hal-04012668 v1
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Evolutionary Mechanisms of Long-Term Genome Diversification Associated With Niche Partitioning in Marine Picocyanobacteria

Hugo Doré , Gregory Farrant , Ulysse Guyet , Julie Haguait , Florian Humily et al.
Frontiers in Microbiology, 2020, 11, ⟨10.3389/fmicb.2020.567431⟩
Article dans une revue hal-02938656 v1
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The genome of Ectocarpus subulatus – A highly stress-tolerant brown alga

Simon M. Dittami , Erwan Corre , Loraine Brillet-Guéguen , Agnieszka Lipinska , Noé Pontoizeau et al.
Marine Genomics, 2020, 52, pp.100740. ⟨10.1016/j.margen.2020.100740⟩
Article dans une revue hal-02866117 v1
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Diversity of Light Sensing Molecules and Their Expression During the Embryogenesis of the Cuttlefish (Sepia officinalis)

Morgane Bonadè , Atsushi Ogura , Erwan Corre , Yann Bassaglia , Laure Bonnaud-Ponticelli
Frontiers in Physiology, 2020, 11, pp.521989. ⟨10.3389/fphys.2020.521989⟩
Article dans une revue hal-02989850 v1
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Seascape genomics reveals population isolation in the reef-building honeycomb worm, Sabellaria alveolata (L.)

Anna P Muir , Stanislas F Dubois , Rebecca E Ross , Louise B Firth , Antony M Knights et al.
BMC Evolutionary Biology, 2020, 20 (1), ⟨10.1186/s12862-020-01658-9⟩
Article dans une revue hal-02935188 v1
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Genome Sequences of 72 Bacterial Strains Isolated from Ectocarpus subulatus: A Resource for Algal Microbiology

Elham Karimi , Enora Geslain , Hetty Kleinjan , Gwenn Tanguy , Erwan Legeay et al.
Genome Biology and Evolution, 2020, 12 (1), pp.3647-3655. ⟨10.1093/gbe/evz278⟩
Article dans une revue hal-02553731 v1
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Omic Analysis of the Sepia officinalis White Body: New Insights into Multifunctionality and Haematopoiesis Regulation

Louis Benoist , Erwan Corre , Benoit Bernay , Joël Henry , Céline Zatylny-Gaudin
Journal of Proteome Research, 2020, 19 (8), pp.3072-3087. ⟨10.1021/acs.jproteome.0c00100⟩
Article dans une revue hal-02965333 v1
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Inferring Biochemical Reactions and Metabolite Structures to Understand Metabolic Pathway Drift

Arnaud Belcour , Jean Girard , Méziane Aite , Ludovic Delage , Camille Trottier et al.
iScience, 2020, 23 (2), pp.100849. ⟨10.1016/j.isci.2020.100849⟩
Article dans une revue hal-01943880 v2
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Genome–Scale Metabolic Networks Shed Light on the Carotenoid Biosynthesis Pathway in the Brown Algae Saccharina japonica and Cladosiphon okamuranus

Delphine Nègre , Méziane Aite , Arnaud Belcour , Clémence Frioux , Loraine Brillet-Guéguen et al.
Antioxidants , 2019, 8 (11), pp.564. ⟨10.3390/antiox8110564⟩
Article dans une revue hal-02395080 v1
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Comparative analysis of five Mucor species transcriptomes

Annie Lebreton , Laurence Meslet-Cladière , Stéphanie Morin-Sardin , Emmanuel Coton , Jean-Luc Jany et al.
Genomics, 2019, 111, pp.1306 - 1314. ⟨10.1016/j.ygeno.2018.09.003⟩
Article dans une revue hal-03488854 v1
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Transcriptomic analysis of clam extra pallial fluids reveals immunity and cytoskeleton alterations in the first week of Brown Ring Disease development

Alexandra Rahmani , Erwan Corre , Gaelle Richard , Adeline Bidault , Christophe Lambert et al.
Fish and Shellfish Immunology, 2019, 93, pp.940-948. ⟨10.1016/j.fsi.2019.08.025⟩
Article dans une revue hal-02409065 v1
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Metabarcoding on planktonic larval stages: an efficient approach for detecting and investigating life cycle dynamics of benthic aliens

Marjorie Couton , Thierry Comtet , Sabrina Le Cam , Erwan Corre , Frédérique Viard
Management of Biological Invasions, 2019, 10 (4), pp.657-689. ⟨10.3391/mbi.2019.10.4.06⟩
Article dans une revue hal-02431784 v1
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First Viruses Infecting the Marine Diatom Guinardia delicatula

Laure Arsenieff , Nathalie Simon , Fabienne Rigaut-Jalabert , Florence Le Gall , Samuel Chaffron et al.
Frontiers in Microbiology, 2019, 9, pp.3235. ⟨10.3389/fmicb.2018.03235⟩
Article dans une revue hal-01994588 v1
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Temperature Modulates Sex-Biased Gene Expression in the Gametophytes of the Kelp Saccharina latissima

Cátia Monteiro , Sandra Heinrich , Inka Bartsch , Klaus Valentin , Erwan Corre et al.
Frontiers in Marine Science, 2019, 6, pp.769. ⟨10.3389/fmars.2019.00769⟩
Article dans une revue hal-04012665 v1
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Is geographical variation driving the transcriptomic responses to multiple stressors in the kelp Saccharina latissima?

Cátia Marina Machado Monteiro , Huiru Li , Kai Bischof , Inka Bartsch , Klaus Ulrich Valentin et al.
BMC Plant Biology, 2019, 19, pp.513. ⟨10.1186/s12870-019-2124-0⟩
Article dans une revue hal-04012669 v1
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Stable isotope probing and metagenomics highlight the effect of plants on uncultured phenanthrene-degrading bacterial consortium in polluted soil

François Thomas , Erwan Corre , Aurélie Cebron
The International Society of Microbiologial Ecology Journal, 2019, 13 (7), pp.1814-1830. ⟨10.1038/s41396-019-0394-z⟩
Article dans une revue hal-02322773 v1
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Dietary aquaculture by-product hydrolysates: impact on the transcriptomic response of the intestinal mucosa of European seabass (Dicentrarchus labrax) fed low fish meal diets

Alexandre Leduc , Céline Zatylny-Gaudin , Marie Robert , Erwan Corre , Gildas Le Corguille et al.
BMC Genomics, 2018, 19, pp.396. ⟨10.1186/s12864-018-4780-0⟩
Article dans une revue hal-01973434 v1
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Comparative Time-Scale Gene Expression Analysis Highlights the Infection Processes of Two Amoebophrya Strains

Sarah Farhat , Isabelle Florent , Benjamin Noël , Ehsan Kayal , Corinne da Silva et al.
Frontiers in Microbiology, 2018, 9, ⟨10.3389/fmicb.2018.02251⟩
Article dans une revue hal-02126891 v1
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Complete Genome Sequence of the Halophilic Methylotrophic Methanogen Archaeon Methanohalophilus portucalensis Strain FDF-1(T)

Stéphane L'Haridon , Erwan Corre , Yue Guan , Manikandan Vinu , Violetta La Cono et al.
Microbiology Resource Announcements, 2018, 6 (3), pp.01482-17. ⟨10.1128/genomeA.01482-17⟩
Article dans une revue hal-02372884 v1
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Therapeutic Potential of a New Jumbo Phage That Infects Vibrio coralliilyticus, a Widespread Coral Pathogen

Loïc Jacquemot , Yvan Bettarel , Joanne Monjol , Erwan Corre , Sebastien Halary et al.
Frontiers in Microbiology, 2018, 9, pp.2501. ⟨10.3389/fmicb.2018.02501⟩
Article dans une revue hal-01913634 v1

Analysis of the genomic basis of functional diversity in dinoflagellates using a transcriptome-based sequence similarity network.

Arnaud Meng , Erwan Corre , Ian Probert , Andres Gutierrez-Rodriguez , Raffaele Siano et al.
Molecular Ecology, 2018, 27 (10), pp.2365-2380. ⟨10.1111/mec.14579⟩
Article dans une revue hal-02879300 v1

Design of antimicrobial peptides from a cuttlefish database

Baptiste Houyvet , Bruno Zanuttini , Erwan Corre , Gildas Le Corguillé , Joël Henry et al.
Amino Acids, 2018, 50 (11), pp.1573-1582. ⟨10.1007/s00726-018-2633-4⟩
Article dans une revue hal-01991164 v1

Adhesive gland transcriptomics uncovers a diversity of genes involved in glue formation in marine tube-building polychaetes

Jean-Philippe Buffet , Erwan Corre , Evelyne Duvernois-Berthet , Jérôme Fournier , Pascal Jean Lopez
Acta Biomaterialia, 2018, 72, pp.316-328. ⟨10.1016/j.actbio.2018.03.037⟩
Article dans une revue hal-02323016 v1

Identification of a moronecidin-like antimicrobial peptide in the venomous fish Pterois volitans: Functional and structural study of pteroicidin-α

Baptiste Houyvet , Yolande Bouchon-Navaro , Claude Bouchon , Didier Goux , Benoît Bernay et al.
Fish and Shellfish Immunology, 2018, 72, pp.318-324. ⟨10.1016/j.fsi.2017.11.003⟩
Article dans une revue hal-01991168 v1
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A de novo approach to disentangle partner identity and function in holobiont systems

Arnaud Meng , Camille Marchet , Erwan Corre , Pierre Peterlongo , Adriana A. Alberti et al.
Microbiome, 2018, pp.1-35. ⟨10.1186/s40168-018-0481-9⟩
Article dans une revue hal-01643153 v2
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Crustacean cardioactive peptides Expression, localization, structure, and a possible involvement in regulation of egg-laying in the cuttlefish Sepia officinalis

Maxime Endress , Céline Zatylny-Gaudin , Erwan Corre , Gildas Le Corguille , Louis Benoist et al.
General and Comparative Endocrinology, 2018, 260, pp.67-79. ⟨10.1016/j.ygcen.2017.12.009⟩
Article dans une revue hal-01744294 v1
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Translatome analysis at the egg-to-embryo transition in sea urchin

Héloïse Chassé , Julie Aubert , Sandrine Boulben , Gildas Le corguillé , Erwan Corre et al.
Nucleic Acids Research, 2018, 46 (9), pp.4607 - 4621. ⟨10.1093/nar/gky258⟩
Article dans une revue hal-01803500 v1
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The metagenomic data life-cycle: standards and best practices

Petra ten Hoopen , Robert D. Finn , Lars Ailo Ailo Bongo , Erwan Corre , Bruno Fosso et al.
GigaScience, 2017, 6 (8), ⟨10.1093/gigascience/gix047⟩
Article dans une revue hal-01593068 v1
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Herbivore-induced chemical and molecular responses of the kelps Laminaria digitata and Lessonia spicata

Andrés A Ritter , Léa Cabioch , Loraine A Brillet-Guéguen , Erwan A Corre , Audrey A Cosse et al.
PLoS ONE, 2017, 12 (3), pp.e0173315. ⟨10.1371/journal.pone.0173315.s011⟩
Article dans une revue hal-01587420 v1
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Re-annotation, improved large-scale assembly and establishment of a catalogue of noncoding loci for the genome of the model brown alga Ectocarpus

Alexandre Cormier , Komlan Avia , Lieven Sterck , Thomas Derrien , Valentin Wucher et al.
New Phytologist, 2017, 214 (1), pp.219-232. ⟨10.1111/nph.14321⟩
Article dans une revue hal-03145812 v1
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Detection of bacterial contaminants and hybrid sequences in the genome of the kelp Saccharina japonica using Taxoblast

Simon Dittami , Erwan Corre
PeerJ, 2017, 5, pp.e4073. ⟨10.7717/peerj.4073⟩
Article dans une revue hal-01654700 v1
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Chloropicophyceae, a new class of picophytoplanktonic prasinophytes

Adriana Lopes dos Santos , Thibaut Pollina , Priscillia Gourvil , Erwan Corre , Dominique Marie et al.
Scientific Reports, 2017, 7, pp.14019. ⟨10.1038/s41598-017-12412-5⟩
Article dans une revue hal-01634064 v1

Nitric Oxide Mediates Nitrite-Sensing and Acclimation and Triggers a Remodeling of Lipids

Lina-Juana Dolch , Josselin Lupette , Guillaume Tourcier , Mariette Bedhomme , Séverine Collin et al.
Plant Physiology, 2017, 175 (3), pp.1407 - 1423. ⟨10.1104/pp.17.01042⟩
Article dans une revue hal-01664940 v1
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Complete Genome Sequence of Methanohalophilus halophilus DSM 3094(T), Isolated from a Cyanobacterial Mat and Bottom Deposits at Hamelin Pool, Shark Bay, Northwestern Australia

Stéphane L'Haridon , Erwan Corre , Yue Guan , Manikandan Vinu , Violetta La Cono et al.
Microbiology Resource Announcements, 2017, 5 (7), pp.01604-16. ⟨10.1128/genomeA.01604-16⟩
Article dans une revue hal-02372885 v1
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A Large and Consistent Phylogenomic Dataset Supports Sponges as the Sister Group to All Other Animals

Paul Simion , Herve Philippe , Denis Baurain , Muriel Jager , Daniel J. Richter et al.
Current Biology, 2017, 27 (7), pp.958-967. ⟨10.1016/j.cub.2017.02.031⟩
Article dans une revue hal-01681528 v1

Physiological adjustments and transcriptome reprogramming are involved in the acclimation to salinity gradients in diatoms

Adrien Bussard , Erwan Corre , Cédric Hubas , Evelyne E. Duvernois-Berthet , Gildas Le Corguillé et al.
Environmental Microbiology, 2017, 19 (3), pp.909-925. ⟨10.1111/1462-2920.13398⟩
Article dans une revue mnhn-02283645 v1

Erratum to: Bioinformatics Pipeline for Transcriptome Sequencing Analysis

Sarah Djebali , Valentin Wucher , Sylvain Foissac , Christophe Hitte , Erwan Corre et al.
Methods in Molecular Biology, 2017, 1468, pp.E1. ⟨10.1007/978-1-4939-4035-6_17⟩
Article dans une revue hal-01439359 v1
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Characterization of the neuropeptidome of a Southern Ocean decapod, the Antarctic shrimp Chorismus antarcticus : Focusing on a new decapod ITP-like peptide belonging to the CHH peptide family

Jean-Yves Toullec , Erwan Corre , Perrine Mandon , Marcelo Gonzalez-Aravena , Céline Ollivaux et al.
General and Comparative Endocrinology, 2017, 252, pp.60-78. ⟨10.1016/j.ygcen.2017.07.015⟩
Article dans une revue hal-01578105 v1
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Responses of the arcto-boreal krill species Thysanoessa inermis to variations in water temperature: coupling Hsp70 isoform expressions with metabolism

Kim Huenerlage , Kévin Cascella , Erwan Corre , Lola Toomey , Chi-Ying Lee et al.
Cell Stress and Chaperones, 2016, 21 (6), pp.969 - 981. ⟨10.1007/s12192-016-0720-6⟩
Article dans une revue hal-01395071 v1
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Amelotin Gene Structure and Expression during Enamel Formation in the Opossum Monodelphis domestica

Barbara Gasse , Xi Liu , Erwan Corre , Jean-Yves Sire
PLoS ONE, 2015, 10 (7), pp.e0133314. ⟨10.1371/journal.pone.0133314⟩
Article dans une revue hal-01233552 v1
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WiseScaffolder: an algorithm for the semi-automatic scaffolding of Next Generation Sequencing data

Gregory K. Farrant , Mark Hoebeke , Frédéric Partensky , Gwendoline Andres , Erwan Corre et al.
BMC Bioinformatics, 2015, 16 pp.281. ⟨10.1186/s12859-015-0705-y⟩
Article dans une revue hal-01193001 v1
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Transcriptome analyses to investigate symbiotic relationships between marine protists

Sergio Balzano , Erwan Corre , Johan Decelle , Roberto Sierra , Patrick Wincker et al.
Frontiers in Microbiology, 2015, 6, pp.98. ⟨10.3389/fmicb.2015.00098⟩
Article dans une revue hal-01143962 v1

Neuropeptidome of the Cephalopod Sepia officinalis : Identification, Tissue Mapping, and Expression Pattern of Neuropeptides and Neurohormones during Egg Laying

Céline Zatylny-Gaudin , Valerie Cornet , Alexandre Leduc , Bruno Zanuttini , Erwan A Corre et al.
Journal of Proteome Research, 2015, 15 (1), pp.48-67. ⟨10.1021/acs.jproteome.5b00463⟩
Article dans une revue hal-02191510 v1
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How Egg Case Proteins Can Protect Cuttlefish Offspring?

Valérie Cornet , Joël Henry , Didier Goux , Emilie Duval , Benoît Bernay et al.
PLoS ONE, 2015, 10 (7), pp.e0132836. ⟨10.1371/journal.pone.0132836⟩
Article dans une revue hal-01991188 v1
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Sexual Dimorphism and the Evolution of Sex-Biased Gene Expression in the Brown Alga Ectocarpus

Agnieszka Lipinska , Alexandre Cormier , Remy Luthringer , Akira F Peters , Erwan Corre et al.
Molecular Biology and Evolution, 2015, 32 (6), pp.1581-1597. ⟨10.1093/molbev/msv049⟩
Article dans une revue hal-01285048 v1

Molecular characterization of peptide fractions of a Tilapia (Oreochromis niloticus) by-product hydrolysate and in vitro evaluation of antibacterial activity

Marie Robert , Céline Zatylny-Gaudin , Vincent Fournier , Erwan Corre , Gildas Le Corguillé et al.
Process Biochemistry, 2015, 50 (3), pp.487-492. ⟨10.1016/j.procbio.2014.12.022⟩
Article dans une revue hal-01991227 v1
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Diversification, Evolution and Sub-Functionalization of 70kDa Heat-Shock Proteins in Two Sister Species of Antarctic Krill: Differences in Thermal Habitats, Responses and Implications under Climate Change

Kévin Cascella , Didier Jollivet , Claire Papot , Nelly Léger , Erwan Corre et al.
PLoS ONE, 2015, 10 (4), pp.e0121642. ⟨10.1371/journal.pone.0121642⟩
Article dans une revue hal-01142647 v1

The Toll/NF-κB pathway in cuttlefish symbiotic accessory nidamental gland

Valérie Cornet , Joël Henry , Erwan Corre , Gildas Le Corguillé , Céline Zatylny-Gaudin
Developmental and Comparative Immunology, 2015, 53 (1), pp.42-46. ⟨10.1016/j.dci.2015.06.016⟩
Article dans une revue hal-01991195 v1
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A Haploid System of Sex Determination in the Brown Alga Ectocarpus sp.

Sophia S. Ahmed , J. Mark Cock , Eugenie Pessia , Remy Luthringer , Alexandre Cormier et al.
Current Biology, 2014, 24 (17), pp.1945-1957. ⟨10.1016/j.cub.2014.07.042⟩
Article dans une revue hal-01132642 v1
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Comparative Transcriptome of Wild Type and Selected Strains of the Microalgae Tisochrysis lutea Provides Insights into the Genetic Basis, Lipid Metabolism and the Life Cycle

Gregory Carrier , Matthieu Garnier , Loïc Le Cunff , Gaël Bougaran , Ian Probert et al.
PLoS ONE, 2014, 9 (1), pp.e86889. ⟨10.1371/journal.pone.0086889⟩
Article dans une revue hal-01100651 v1

Dual role of the cuttlefish salivary proteome in defense and predation

Valérie Cornet , Joël Henry , Erwan Corre , Gildas Le Corguillé , Bruno Zanuttini et al.
Journal of Proteomics, 2014, 108, pp.209-222. ⟨10.1016/j.jprot.2014.05.019⟩
Article dans une revue hal-01991240 v1

Transcriptomic and peptidomic analysis of protein hydrolysates from the white shrimp (L. vannamei)

Marie Robert , Céline Zatylny-Gaudin , Vincent Fournier , Erwan Corre , Gildas Le Corguillé et al.
African Journal of Biotechnology, 2014, 186, pp.30-37
Article dans une revue hal-01991237 v1
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Transcriptome and Peptidome Characterisation of the Main Neuropeptides and Peptidic Hormones of a Euphausiid: The Ice Krill, Euphausia crystallorophias

Jean-Yves Toullec , Erwan Corre , Benoit Bernay , Michael A. S. Thorne , Kévin Cascella et al.
PLoS ONE, 2013, 8 (8), pp.e71609. ⟨10.1371/journal.pone.0071609⟩
Article dans une revue hal-01250917 v1

The Ectocarpus Genome and Brown Algal Genomics The Ectocarpus Genome Consortium

J. Mark Cock , Lieven Sterck , Sophia Ahmed , Andrew E. Allen , Grigoris Amoutzias et al.
Advances in Botanical Research, 2012, 64, pp.141 - 184. ⟨10.1016/B978-0-12-391499-6.00005-0⟩
Article dans une revue hal-02649287 v1
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Conjugating effects of symbionts and environmental factors on gene expression in deep-sea hydrothermal vent mussels.

Isabelle Boutet , Raymond Ripp , Odile Lecompte , Carole Dossat , Erwan Corre et al.
BMC Genomics, 2011, 12 (1), pp.530. ⟨10.1186/1471-2164-12-530⟩
Article dans une revue inserm-00642454 v1
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The $Ectocarpus$ genome and the independent evolution of multicellularity in brown algae

J. Mark Cock , Lieven Sterck , Pierre Rouzé , Delphine Scornet , Andrew E. Allen et al.
Nature, 2010, 465 (7298), pp.617-621. ⟨10.1038/nature09016⟩
Article dans une revue cea-00906990 v1
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A sequence-tagged genetic map for the brown alga Ectocarpus siliculosus provides large-scale assembly of the genome sequence

Svenja Heesch , Ga Youn Cho , Akira F Peters , Gildas Le Corguillé , Cyril Falentin et al.
New Phytologist, 2010, 188 (1), pp.42-51. ⟨10.1111/j.1469-8137.2010.03273.x⟩
Article dans une revue hal-01806415 v1
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Plastid genomes of two brown algae, Ectocarpus siliculosus and Fucus vesiculosus: further insights on the evolution of red-algal derived plastids

Gildas Le Corguillé , Gareth Pearson , Marta Valente , Carla Viegas , Bernhard Gschloessl et al.
BMC Evolutionary Biology, 2009, 9, pp.253. ⟨10.1186/1471-2148-9-253⟩
Article dans une revue hal-01806420 v1
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Global expression analysis of the brown alga Ectocarpus siliculosus (Phaeophyceae) reveals large-scale reprogramming of the transcriptome in response to abiotic stress

Simon M Dittami , Delphine Scornet , Jean-Louis Petit , Béatrice Segurens , Corinne da Silva et al.
Genome Biology, 2009, 10, pp.R66. ⟨10.1186/gb-2009-10-6-r66⟩
Article dans une revue hal-01806423 v1
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Life-cycle-generation-specific developmental processes are modified in the immediate upright mutant of the brown alga Ectocarpus siliculosus

Akira F. Peters , Delphine Scornet , Morgane Ratin , Bénédicte Charrier , Annabelle Monnier et al.
Development (Cambridge, England), 2008, 135 (8), pp.1503-1512. ⟨10.1242/dev.016303⟩
Article dans une revue hal-01806436 v1

NADPH oxidases in Eukaryotes: red algae provide new hints!

Catherine Boyen , Cécile Herve , Thierry Tonon , Jonas Collen , Erwan Corre
Current Genetics, 2006, 49, pp.190-207
Article dans une revue hal-00091933 v1

Novel uncultured Epsilonproteobacteria dominate a filamentous sulphur mat from the 13°N hydrothermal vent field, East Pacific Rise

Hélène Moussard , Erwan Corre , Marie-Anne Cambon-Bonavita , Yves Fouquet , Christian Jeanthon
FEMS Microbiology Ecology, 2006, 58 (3), pp.449-463. ⟨10.1111/j.1574-6941.2006.00192.x⟩
Article dans une revue hal-00617025 v1

Identification of stress gene transcripts in Laminaria digitata (Phaeophyceae) protoplast cultures by expressed sequence tag analysis

Vincent Roeder , Jonas Collén , Sylvie Rousvoal , Erwan Corre , Catherine Leblanc et al.
Journal of Phycology, 2005, 41, pp.1227-1235. ⟨10.1111/j.1529-8817.2005.00150.x⟩
Article dans une revue istex hal-00098389 v1

Immune response of Mytilus edulis challenged with low-virulence and high-virulence isolates of F. halioticida

Hélène Bouras , Erwan Corre , Benoit Bernay , Jean Louis Blin , Manuel Savary et al.
22nd International Conference on Disease of Fish and Shellfish, European Association of Fish Pathologist; Institute of Marine Biology, Biotechnology and Aquaculture (IMBBC) - Hellenic Center for Marine Research (HCMR), Sep 2025, Heraklion - Crète, Greece
Communication dans un congrès hal-05240201 v1
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Towards a genetic map for the brown alga Saccorhiza polyschides

Svenja Heesch , Ga Youn Cho , Akira F. Peters , Gildas Le Corguillé , Cyril Falentin et al.
German Botanical Society (DBG) meeting, Mar 2018, Berchtesgaden, Germany
Communication dans un congrès hal-02947599 v1

A transcriptomic approach to study marine plankton holobionts

Arnaud Meng , Erwan Corre , Pierre Peterlongo , Camille Marchet , Adriana A. Alberti et al.
International Conference on Holobionts, Apr 2017, Paris, France
Communication dans un congrès hal-01575069 v1

Nature, nurture and the structure of macroalgal genomes

J. Mark Cock , Jonas Collen , Lieven Sterck , Pierre Rouzé , Delphine Scornet et al.
5. European Phycological Congress, Sep 2011, Rhodes, Greece
Communication dans un congrès hal-02749757 v1

BioDesc : gestion d'un entrepôt multiformat de descriptions de ressources bioinformatiques

Philippe Picouet , Z. Doughi , Loraine Brillet , Erwan Corre , Christophe Caron et al.
JOBIM, Sep 2010, Montpellier, France
Communication dans un congrès inria-00540815 v1

BioWorkFlow: Web Services toolkit and workflow applications evaluation to deploy a confidence network

Marc Wessner , Martin Senger , Franck Samson , Philippe Picouet , François Moreews et al.
Jobim (Journées Ouvertes Biologie Informatique Mathématiques), Jun 2008, Lille, France
Communication dans un congrès inria-00327528 v1
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BYTE-Sea: the digital infrastructure of ATLASea, the French marine genome sequencing programme

Annie Lebreton , Loraine Brillet-Guéguen , Karine Massau , Alexandre Nicaise , Arthur Le Bars et al.
JOBIM 2025 - Journées Ouvertes en Biologie, Informatique et Mathématiques, Jul 2025, Bordeaux, France. 2025
Poster de conférence hal-05135947 v1
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Biodiversity Genomic Data Management an IFB Initiative

Clara Emery , Lucas Leclère , Eric Pelletier , Vincent Lefort , Yvan Le Bras et al.
JOBIM 2025, Jul 2025, Bordeaux, France
Poster de conférence hal-05135435 v1
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EuphausiiDB: A TRANSCRIPTOMIC REFERENCE DATABASE FOR KRILL SPECIES

Triskell Cumunel , Fatoumata Binta Barry , Laure Lamothe , Mark Hoebeke , Andreas Wallberg et al.
JOBIM2025, Jul 2025, Bordeaux, France
Poster de conférence hal-05144070 v1
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BYTE-Sea: the digital infrastructure of ATLASea, the French marine genome sequencing programme

Karine Massau , Byte-Sea Consortium , Erwan Corre
JOBIM 2024 - Journées ouvertes en biologie, informatique et mathématiques, Jun 2024, Toulouse, France. pp.1-1, 2024
Poster de conférence hal-04693601 v1
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MyGOD : Visualization and analysis interface for marine genomic observatories data

Charlotte André , Mark Hoebeke , Nicolas Henry , Cyril Noel , Patrick Durand et al.
JOBIM 2022, Jul 2022, Rennes, France. ⟨10.5281/zenodo.6451438⟩
Poster de conférence hal-04029627 v1
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Gene expression analysis of duck liver steatosis from hybrid and parental species

Xi Liu , Frédéric Hérault , Christian Diot , Erwan Corre
Journées Ouvertes Biologie, Informatique et Mathématiques (Jobim), Jul 2018, Marseille, France. , 2018, Abstracts Jobim 2018
Poster de conférence hal-01842089 v1
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TRANS-C³ - The Transcriptome of downy oak (Quercus pubescens Willd.) in Response to Climate Change

Xi Liu , Béatrice Loriod , Stefano Caffarri , Erwan Corre , Jean-Philippe Mévy
Journées Ouvertes Biologie, Informatique et Mathématiques (JOBIM), Jul 2018, Marseille, France
Poster de conférence hal-01857993 v1

DNA−SIP and metagenomic revealed shifts in active phenanthrene−degrading bacteria of rhizosphere and bulk soil from a historically contaminated site

Aurélie Cébron , François Thomas , Erwan Corre
14th Symposium on Bacterial Genetics and Ecology, BAGECO, Jun 2017, Aberdeen, United Kingdom
Poster de conférence hal-03145407 v1

Transcriptomic response of intestine to low fish meal diet and dietary marine hydrolysates in european seabass (dicentrarchus labrax)

Alexandre Leduc , Céline Zatylny-Gaudin , Erwan Corre , Antoine Lefevre-Scelles , Hélène Castel et al.
International Conference of the European Aquaculture Society, Oct 2017, Dubrovnik, Croatia
Poster de conférence hal-02340456 v1

nBioinformatics Pipeline for Transcriptome Sequencing Analysis

Sarah Djebali , Valentin Wucher , Sylvain Foissac , Christophe Hitte , Erwan Corre et al.
Enhancer RNAs : Methods and Protocols, 1468 (Chapter 14), Humana Press Inc., 2017, Methods in Molecular Biology, 978-1-4939-4033-2. ⟨10.1007/978-1-4939-4035-6_14⟩
Chapitre d'ouvrage hal-02788591 v1

Bioinformatics Pipeline for Transcriptome Sequencing Analysis

Sarah Djebali , Valentin Wucher , Sylvain Foissac , Christophe Hitte , Erwan Corre et al.
Enhancer RNAs - Methods and Protocols, 1468, Editions Springer, pp.E1-E1, 2017, Methods in Molecular Biology, 978-1-4939-4035-6. ⟨10.1007/978-1-4939-4035-6⟩
Chapitre d'ouvrage hal-02789209 v1