Fabien Jourdan
Présentation
Publications
Publications
IsoDesign: software for optimizing the isotopic composition of labeled substrates in 13C-fluxomics experimentsRFMF 2025, Jun 2025, Paris, France |
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IsoDesign: substrate design for isotopic labelling experimentsMetabomeeting 2024, Nov 2024, Liverpool, United Kingdom |
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Automated workflows for 13C-fluxomicsModeling metabolism 2nd edition, 2024, Toulouse, France |
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Exploration multi-omique et in silico des effets transgénérationels et sexe-spécifiques induits par le TBT, un composé obésogène, sur le métabolisme hépatique de la souris15èmes journées scientifiques du Réseau Français de Métabolomique et Fluxomique (RFMF), May 2023, Perpignan, France |
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Modelling the muscle metabolic response in anabolic and catabolic states using arterio-venous blood metabolomics profiles8. Conference on Constraint-Based reconstruction and Analysis (COBRA 2022), Sep 2022, Galway, Ireland |
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Automatising 13 C-fluxomics flux calculations through a workflow hosted on the Workflow4Metabolomics Galaxy platformAnalytics 2022, RFMF; AFSEP; AFSM, Sep 2022, Nantes, France |
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SAMBA, a recommendation system for biomarker discovery using metabolic networks8th Conference on Constraint-Based reconstruction and Analysis (COBRA 2022), Sep 2022, Galway, Ireland |
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Modelling intrahepatic metabolic rewiring during the onset of obesity using arterio- venous blood metabolomics profilesEuropean RFMF Metabomeeting 2020, Jan 2020, Toulouse, France |
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Inhibition of enteric methanogenesis in cows induces changes in plasma metabolome highlighting potential emission markers7. Greenhouse Gas and Animal Agriculture Conference, Aug 2019, Foz do Iguassu, Brazil |
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Modélisation du réseau métabolique des cellules de Leucémies Aiguës Myéloïdes pour comprendre les différences métaboliques liées à la mutation sur IDH1Congrès de Spectrométrie de Masse, Métabolomique et Fluxomique (SMMAP), Oct 2017, Marne-la-Vallée, France |
Reconstruction du réseau métabolique de la tomate9. Journées scientifiques du RFMF, Réseau Francophone de Métabolomique et Fluxomique (RFMF). FRA., Jun 2015, Lille, France |
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MetaboHUB and RFMF : two tools at the service of metabolomics and fluxomics in FranceMERLION Metabolomics Workshop Singapore 2014, Nov 2014, Singapore, Singapore |
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Visualization of time-series data in the context of metabolic networks with Systrip SoftwareJournées Ouvertes Biologie Informatique Mathématiques (JOBIM 2013), Jul 2013, France |
MetaboHUB: une infrastructure nationale au service de la métabolomiqueSéance thématique "La métabolomique : son application en recherche pharmaceutique et diagnostique", Académie Nationale de Pharmacie. FRA., Feb 2013, Paris, France |
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MetaboHUB: a french infrastructure dedicated to metabolomics and fluxomicsMetabolomics 2013 - 9. Annual conference of the Metabolomics Society, Jul 2013, Glasgow, United Kingdom |
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MetaboHUB: a national infrastructure dedicated to metabolomics and fluxomics7. Journées scientifiques du Réseau Français de Métabolomique et de Fluxomique (RFMF), Jun 2013, Amiens, France |
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Systrip: a visual environment for the investigation of time-series data in the context of metabolic networks16th International Conference on Information Visualization (IV'12), Jul 2012, Montpellier, France. pp.4771a204 |
Peut-on faire confiance à la métabolomique: résultats de l'initiative MetaboRing6. Journées Scientifiques du Réseau Français de Métabolomique et Fluxomique (RFMF), May 2012, Nantes, France |
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Can we trust untargeted metabolomics: results of the metabo-ring study2. African-European Conference on Chemometrics - Afrodata 2012, Nov 2012, Stellenbosch, South Africa |
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Metabolomics for food and environmental toxicology : from targeted to global integrative approachesLC-MS Montreux Symposium 2012, Nov 2012, Montreux, Switzerland |
Approche métabonomique pour l'étude in vivo, in vitro et in silico de la toxicologie des faibles doses. 5emes Journées scientifiques TOXALIM, Ville service., Dec 2011, Toulouse, France |
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Use of reconstituted metabolic networks to assist in metabolomic data visualization and miningMetabolomics 2011, Saisissez le nom du laboratoire, du service ou du département., Ville service., Jun 2011, Cairns, Australia |
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Extraction d'"histoires métaboliques" dans les réseaux métaboliques à partir de données métabolomiques5eme journées du RFMF, Saisissez le nom du laboratoire, du service ou du département., Ville service., May 2011, Paris, France |
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Development of metabolomics method associating NMR and UPLC-HRMSSMAP 2011, Saisissez le nom du laboratoire, du service ou du département., Ville service., Sep 2011, Avignon, France |
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Domain specific vs Generic Network Visualization: an evaluation with metabolic networksAustralasian Conference on User Interface, Jan 2011, Australia. pp.9-18 |
Metaboflux : a method to analyze flux distribution in metabolic networksWorkshop Metabolomics2010, AmsterdamRAI, the Netherlands, 2010, Amsterdam, Netherlands |
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Computing "metabolic stories" in genome scale metabolic networks based on metabolomics data.(2011)Metabolomics 2011, Ville service., Jun 2011, Cairns, Australia |
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Telling StoriesICALP 2011 satellite workshop: Graph Algorithms and Applications (GA), 2011, Zurich, Switzerland. ⟨10.1016/j.tcs.2012.07.023⟩ |
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Detecting structural changes and command hierarchies in dynamic social networksAdvances in Social Network Analysis and Data Mining, 2009, Greece. pp.83-88 |
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Revealing subnetwork roles using contextual visualization: comparison of metabolic networks12th International Conference on Information Visualisation, Jul 2008, London, United Kingdom. pp.638-643 |
Multiscale scatterplot matrix for visual and interactive exploration of metabonomic data1st Visual Information Expert Workshop (VIEW), Apr 2006, Paris, France |
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Comparaison Visuelle de Réseaux Métaboliques8èmes Journées Ouvertes Biologie Informatique Mathématiques, 2007, France. pp.285-286 |
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Metabolic network visualization using constraint planar graph drawing AlgorithmIV 06: Proceedings of the 10 International Conference on Information Visualisation (IV06), 2006, United States. pp.489 - 496 |
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Multiscale scatterplot matrix for visual and interactive exploration of metabonomics dataVisual Information Expert Workshop, Apr 2006, Paris, France. pp.202-215, ⟨10.1007/978-3-540-71027-1_18⟩ |
Un Algorithme Contraint de Dessin de Graphe Planaire pour la Visualisation de Réseaux MétaboliquesQuatrième édition du congrés francophone de doctorants en STIC, MajecSTIC, 2006, France. pp.électronique |
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Une Approche MDS Hybride pour l'Exploration Visuelle InteractiveConférence Francophone sur l'Interaction Homme-Machine, Sep 2005, Toulouse, France |
Drawing, Clustering and Visualization of Biological PathwaysInternational Symposium on Networks in Bio-Informatics, Mar 2004, Paris, France |
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Metric-Based Network Exploration and Multiscale ScatterplotInfoVis: Information Visualization, Oct 2004, Austin, United States. pp.135-142, ⟨10.1109/INFVIS.2004.47⟩ |
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Multiscale hybrid MDSIV: Information Visualization, Jul 2004, London, United Kingdom. pp.388-393, ⟨10.1109/IV.2004.1320173⟩ |
A Tool for Metabolic and Regolatory Pathways Visual AnalysisConference on Visualization and Data Analysis, Jan 2003, Santa Clara, United States. pp.46-55 |
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Multiscale Visualization of Small World NetworksInfoVis: Information Visualization, Oct 2003, Seattle, WA, United States. pp.75-81 |
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Software Components Capture using Graph ClusteringIEEE International Workshop on Program Comprehension, 2003, Portland, Oregon, United States. pp.217-226 |
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Software Components Capture using Graph ClusteringIEEE International Workshop on Program Comprehension, 2003, Portland, Oregon, United States. pp.217-226 |
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A refined strategy linking transcriptomics and metabolic models for deciphering chemical induced changesJOBIM 2025 (Journées Ouvertes Biologie, Informatique et Mathématiques), Jul 2025, Bordeaux, France |
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MetExploreViz, online visualisation tool for metabolic networksMetabolomics 2025, Jun 2025, Prague, Czech Republic. 12, 2016 |
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Multi-omics data integration in constraint-based modeling of metabolic networks to study the metabolism of adipose-derived stem cellsJOBIM 2025, Jul 2025, Bordeaux & Online, France. |
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A multi-omics and modelling investigation reveals transgenerational, sex-specific effects of the obesogenic compound TBT on hepatic metabolism in miceEurotox congress 2025, Sep 2025, Athenes, Grece, Greece |
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Functional analysis of metabolic networks and host-microbiota interactions using multimodal Metabolomics. A Methodological Approach Using Mass Spectrometry, NMR, DESI Imaging, and Modeling.RFMF 2025, Jun 2025, Paris, France |
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The CHaMP web-app:an interactive tool to infer biotransformation pathways from your MS peaks15èmes journées scientifiques du Réseau Francophone de Métabolomique et Fluxomique RFMF, May 2023, Perpignan, France |
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PhysioFit: Quantifying cell growth parameters and uptake and production fluxes15émes journées scientifiques du RFMF ( Réseau Francophone de Métabolomique et Fluxomique ), May 2023, Perpignan, France. 2023 |
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Métabolomique multiplateforme (MS, RMN) : étude de l’impact de l'ajout de TSP sur les données MSCongrès Analytics 2022, Sep 2022, Nantes, France |
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Improving prediction of essential genes using context-specific metabolic network ensemblesEuropean RFMF Metabomeeting 2020, Jan 2020, Toulouse, France |
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INPUT OF DEEP PHENOTYPING IN THE METABOLIC SYNDROME STRATIFICATIONEuropean RFMF Metabomeeting 2020, Jan 2020, Toulouse, France. , 262 p., 2020, Oral and Poster Abstracts European RMF Metabomeeting 2020 |
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MetExplore: Omics data analysis in the context of metabolic networksEuropean RFMF Metabomeeting 2020, Jan 2020, Toulouse, France. |
Study of the hepatic metabolic effects induced by PFOA exposure using a multiplatform metabolomics approach55. Congress of the European-Societies-of-Toxicology (EUROTOX) - Toxicology - Science Providing Solutions, Sep 2019, Helsinki, Finland. ELSEVIER IRELAND LTD, 2019, TOXICOLOGY LETTERS |
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Hepatic metabolomics and transcriptomics provide valuable insights on inflammatory and metabolic features in rats fed on a high fat diet but showing similar clinical phenotyping alterations12. Journées Scientifiques du Réseau Francophone de Métabolomique et Fluxomique RFMF, May 2019, Clermont-Ferrand, France. 168 p., 2019, Livre des résumés |
Modelling hepatic metabolic changes during the onset of obesity using NMR metabolomics arterio-venous blood exploration in minipigs12. Journées Scientifiques du Réseau Francophone de Métabolomique et Fluxomique RFMF, May 2019, Clermont-Ferrand, France. 168 p., 2019, Livre des résumés |
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Modeling hepatic metabolic changes during the onset of obesity from metabolomics arterio-venous blood exploration in minipigsCopenhagen Bioscience Conference 2017: Where big-data gets translated into knowledge, May 2017, Copenhague, Netherlands. 2017, Bioscience Conference 2017 |
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Reconstruction du réseau métabolique de la tomate9. Journées scientifiques du RFMF, Jun 2015, Lille, France. 2015 |
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Reconstruction du réseau métabolique de la tomate8. Journées Scientifiques du Réseau Français de Métabolomique et Fluxomique RFMF, May 2014, Lyon, France. 1 p., 2014 |
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Can we Trust Untargeted Metabolomics: Results of the Metabo-ring Initiative, a Large-scale Multi-instruments Inter-laboratoire Study9. Annual Conference of the Metabolomics Society, Jul 2013, Glasgow, United Kingdom. 2013, 9th Annual Conference of the Metabolomics Society |
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Can we trust untargeted metabolomics: first results of the metabo-ring study8. Annual International Meeting of the Metabolomics Society, Jun 2012, Washington, United States. , 2012 |
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TrypanoCyc: a community effort towards the development of a metabolic pathway database for Trypanosoma brucei.Kinetoplastid Molecular Cell Biology Meeting (KMCB 2011), 2011, Inconnue, France. 2011 |
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MetExplore, a framework for the analysis of metabolic networks: applications in the field of metabolomics data and the study of endocrine disruptors6th Copenhagen Workshop on Endocrine Disrupters, Apr 2011, Copenhague, Denmark. 2011 |
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MetExplore: a web server to link metabolomic experiments and genome-scale metabolic networksJOBIM 2010, Sep 2010, Montpellier, France. , 1 p., 2010, JOBIM 2010 Montpellier, Journée Ouvertes Biologie Informatique Mathématique, Montpellier, France, 7 - 9 septembre 2010 |
Plant genome-scale metabolic networksScience Direct. Plant Metabolomics in full swing, 98, 2021, Advances in Botanical Research, ⟨10.1016/bs.abr.2020.09.021⟩ |
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Genome-scale metabolic networksMetabolomics: Practical Guide to Design and Analysis, 1ère édition, Chapman and Hall, 290 p., 2019, 9781315370583. ⟨10.1201/9781315370583-8⟩ |
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Understanding Protozoan Parasite Metabolism and Identifying Drug Targets through Constraint-Based ModelingComprehensive Analysis of Parasite Biology: From Metabolism to Drug Discovery, Wiley-VCH Verlag GmbH & Co. KGaA, pp.487-512, 2016, ⟨10.1002/9783527694082.ch21⟩ |
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Analysing human metabolic networks using metabolomicsMetabolomics as a Tool in Nutrition Research, Elsevier, pp.85-114, 2015, ⟨10.1016/B978-1-78242-084-2.00005-8⟩ |
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Human metabolic networks and metabolomicsMetabolomics as tool in nutrition research, Woodhead publishing Limited, 2014 |
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Qualitative modelling of metabolic networksMetabolomics coming of age with its technological diversity, 67, 2013, Advances in Botanical Research, ⟨10.1016/B978-0-12-397922-3.00012-5⟩ |
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A stable decomposition algorithm for dynamical social network analysisFabrice Guillet; Gilbert Ritschard; Djamel Abdelkader Zighed and Henri Briand. Advances in Knowledge Discovery and Management, Springer, pp.167-178, 2010, Studies in Computational Intelligence, ⟨10.1007/978-3-642-00580-0_10⟩ |
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A strategy to detect metabolic changes induced by exposure to chemicals from large sets of condition-specific metabolic models computed with enumeration techniques2024 |
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Suggesting disease associations for overlooked metabolites using literature from metabolic neighbours2023 |
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Pathway analysis in metabolomics: pitfalls and best practice for the use of over-representation analysis2021 |
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Combinatory therapy targeting mitochondrial oxidative phosphorylation improves efficacy of IDH mutant inhibitors in acute myeloid leukemia2020 |
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DEXOM: Diversity-based enumeration of optimal context-specific metabolic networks2020 |