Fabien Jourdan
115
Documents
Researcher identifiers
fabien-jourdan
-
0000-0001-9401-2894
- IdRef : 069183996
Presentation
**DR INRAE - TOXALIM Unit, Toulouse.**
**Research interests**
Food toxicology: some food contaminants, like Bipshenol A, may have impact on Human Health. Our aim is to study potential metabolic effects according to different doses and during critical Human development phases (e.g. pregnancy).
Bioinformatics: developing methods to study genome-scale metabolic networks. These approaches are mainly based on graph models and constraint based models (e.g. FBA). The aim is to use experimental data like metabolomics ones in order to retrieve parts of the organism metabolism affected by genetic or environmental perturbations.
***Keywords**: metabolic networks, metabolomics, information visualization, food toxicology*
**Affiliations:** Toxalim (Research Center in Food Toxicology), Université de Toulouse, INRAE, ENVT, INP-Purpan, UPS, 31300 Toulouse, France
MetaboHub, French national infrastructure of metabolomics and fluxomics
Publications
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Modelling the muscle metabolic response in anabolic and catabolic states using arterio-venous blood metabolomics profiles8. Conference on Constraint-Based reconstruction and Analysis (COBRA 2022), Sep 2022, Galway, Ireland
Conference papers
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SAMBA, a recommendation system for biomarker discovery using metabolic networks8th Conference on Constraint-Based reconstruction and Analysis (COBRA 2022), Sep 2022, Galway, Ireland
Conference papers
hal-03807772v1
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Modelling intrahepatic metabolic rewiring during the onset of obesity using arterio- venous blood metabolomics profilesEuropean RFMF Metabomeeting 2020, Jan 2020, Toulouse, France
Conference papers
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Inhibition of enteric methanogenesis in cows induces changes in plasma metabolome highlighting potential emission markers7. Greenhouse Gas and Animal Agriculture Conference, Aug 2019, Foz do Iguassu, Brazil
Conference papers
hal-02788492v1
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Modélisation du réseau métabolique des cellules de Leucémies Aiguës Myéloïdes pour comprendre les différences métaboliques liées à la mutation sur IDH1Congrès de Spectrométrie de Masse, Métabolomique et Fluxomique (SMMAP), Oct 2017, Marne-la-Vallée, France
Conference papers
hal-02946080v1
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Reconstruction du réseau métabolique de la tomate9. Journées scientifiques du RFMF, Réseau Francophone de Métabolomique et Fluxomique (RFMF). FRA., Jun 2015, Lille, France
Conference papers
hal-02742882v1
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MetaboHUB and RFMF : two tools at the service of metabolomics and fluxomics in FranceMERLION Metabolomics Workshop Singapore 2014, Nov 2014, Singapour, Singapore
Conference papers
hal-02798242v1
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MetaboHUB: a national infrastructure dedicated to metabolomics and fluxomics7. Journées scientifiques du Réseau Français de Métabolomique et de Fluxomique (RFMF), Jun 2013, Amiens, France
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hal-01002241v1
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MetaboHUB: a french infrastructure dedicated to metabolomics and fluxomicsMetabolomics 2013 - 9. Annual conference of the Metabolomics Society, Jul 2013, Glasgow, United Kingdom
Conference papers
hal-01002247v1
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MetaboHUB: une infrastructure nationale au service de la métabolomiqueSéance thématique "La métabolomique : son application en recherche pharmaceutique et diagnostique", Académie Nationale de Pharmacie. FRA., Feb 2013, Paris, France
Conference papers
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Visualization of time-series data in the context of metabolic networks with Systrip SoftwareJournées Ouvertes Biologie Informatique Mathématiques (JOBIM 2013), Jul 2013, France
Conference papers
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Systrip: a visual environment for the investigation of time-series data in the context of metabolic networks16th International Conference on Information Visualization (IV'12), Jul 2012, Montpellier, France. pp.4771a204
Conference papers
hal-00742176v1
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Peut-on faire confiance à la métabolomique: résultats de l'initiative MetaboRing6. Journées Scientifiques du Réseau Français de Métabolomique et Fluxomique (RFMF), May 2012, Nantes, France
Conference papers
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Metabolomics for food and environmental toxicology : from targeted to global integrative approachesLC-MS Montreux Symposium 2012, Nov 2012, Montreux, Switzerland
Conference papers
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Can we trust untargeted metabolomics: results of the metabo-ring study2. African-European Conference on Chemometrics - Afrodata 2012, Nov 2012, Stellenbosch, South Africa
Conference papers
hal-01595486v1
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Domain specific vs Generic Network Visualization: an evaluation with metabolic networksAustralasian Conference on User Interface, Jan 2011, Australia. pp.9-18
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hal-00579230v1
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Development of metabolomics method associating NMR and UPLC-HRMSSMAP 2011, Saisissez le nom du laboratoire, du service ou du département., Ville service., Sep 2011, Avignon, France
Conference papers
hal-02804072v1
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Approche métabonomique pour l'étude in vivo, in vitro et in silico de la toxicologie des faibles doses. 5emes Journées scientifiques TOXALIM, Ville service., Dec 2011, Toulouse, France
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Extraction d'"histoires métaboliques" dans les réseaux métaboliques à partir de données métabolomiques5eme journées du RFMF, Saisissez le nom du laboratoire, du service ou du département., Ville service., May 2011, Paris, France
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hal-02803297v1
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Use of reconstituted metabolic networks to assist in metabolomic data visualization and miningMetabolomics 2011, Saisissez le nom du laboratoire, du service ou du département., Ville service., Jun 2011, Cairns, Australia
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Computing "metabolic stories" in genome scale metabolic networks based on metabolomics data.(2011)Metabolomics 2011, Ville service., Jun 2011, Cairns, Australia
Conference papers
hal-02803877v1
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Telling StoriesICALP 2011 satellite workshop: Graph Algorithms and Applications (GA), 2011, Zurich, Switzerland. ⟨10.1016/j.tcs.2012.07.023⟩
Conference papers
hal-00748788v1
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Metaboflux : a method to analyze flux distribution in metabolic networksWorkshop Metabolomics2010, AmsterdamRAI, the Netherlands, 2010, Amsterdam, Netherlands
Conference papers
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Detecting structural changes and command hierarchies in dynamic social networksAdvances in Social Network Analysis and Data Mining, 2009, Greece. pp.83-88
Conference papers
hal-00406240v1
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Revealing subnetwork roles using contextual visualization: comparison of metabolic networks12th International Conference on Information Visualisation, Jul 2008, London, United Kingdom. pp.638-643
Conference papers
hal-00343889v1
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Comparaison Visuelle de Réseaux Métaboliques8èmes Journées Ouvertes Biologie Informatique Mathématiques, 2007, France. pp.285-286
Conference papers
hal-00306674v1
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Multiscale scatterplot matrix for visual and interactive exploration of metabonomics dataVisual Information Expert Workshop, Apr 2006, Paris, France. pp.202-215, ⟨10.1007/978-3-540-71027-1_18⟩
Conference papers
lirmm-00091360v1
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Multiscale scatterplot matrix for visual and interactive exploration of metabonomic data1st Visual Information Expert Workshop (VIEW), Apr 2006, Paris, France
Conference papers
hal-02751211v1
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Un Algorithme Contraint de Dessin de Graphe Planaire pour la Visualisation de Réseaux MétaboliquesQuatrième édition du congrés francophone de doctorants en STIC, MajecSTIC, 2006, France. pp.électronique
Conference papers
hal-00306673v1
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Metabolic network visualization using constraint planar graph drawing AlgorithmIV 06: Proceedings of the 10 International Conference on Information Visualisation (IV06), 2006, United States. pp.489 - 496
Conference papers
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Une Approche MDS Hybride pour l'Exploration Visuelle InteractiveConférence Francophone sur l'Interaction Homme-Machine, Sep 2005, Toulouse, France
Conference papers
lirmm-00106468v1
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Metric-Based Network Exploration and Multiscale ScatterplotInfoVis: Information Visualization, Oct 2004, Austin, United States. pp.135-142, ⟨10.1109/INFVIS.2004.47⟩
Conference papers
lirmm-00108871v1
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Drawing, Clustering and Visualization of Biological PathwaysInternational Symposium on Networks in Bio-Informatics, Mar 2004, Paris, France
Conference papers
lirmm-00109131v1
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Multiscale hybrid MDSIV: Information Visualization, Jul 2004, London, United Kingdom. pp.388-393, ⟨10.1109/IV.2004.1320173⟩
Conference papers
lirmm-00108864v1
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Software Components Capture using Graph ClusteringIEEE International Workshop on Program Comprehension, 2003, Portland, Oregon, United States. pp.217-226
Conference papers
lirmm-00191947v1
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A Tool for Metabolic and Regolatory Pathways Visual AnalysisConference on Visualization and Data Analysis, Jan 2003, Santa Clara, United States. pp.46-55
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lirmm-00269772v1
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Software Components Capture using Graph ClusteringIEEE International Workshop on Program Comprehension, 2003, Portland, Oregon, United States. pp.217-226
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lirmm-00269464v1
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Multiscale Visualization of Small World NetworksInfoVis: Information Visualization, Oct 2003, Seattle, WA, United States. pp.75-81
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lirmm-00269770v1
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Improving prediction of essential genes using context-specific metabolic network ensemblesEuropean RFMF Metabomeeting 2020, Jan 2020, Toulouse, France
Conference poster
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INPUT OF DEEP PHENOTYPING IN THE METABOLIC SYNDROME STRATIFICATIONEuropean RFMF Metabomeeting 2020, Jan 2020, Toulouse, France. , 262 p., 2020, Oral and Poster Abstracts European RMF Metabomeeting 2020
Conference poster
hal-02505908v1
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MetExplore: Omics data analysis in the context of metabolic networksConference poster hal-02948391v1 |
Study of the hepatic metabolic effects induced by PFOA exposure using a multiplatform metabolomics approach55. Congress of the European-Societies-of-Toxicology (EUROTOX) - Toxicology - Science Providing Solutions, Sep 2019, Helsinki, Finland. ELSEVIER IRELAND LTD, 2019, TOXICOLOGY LETTERS
Conference poster
hal-02306108v1
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Modelling hepatic metabolic changes during the onset of obesity using NMR metabolomics arterio-venous blood exploration in minipigs12. Journées Scientifiques du Réseau Francophone de Métabolomique et Fluxomique RFMF, May 2019, Clermont-Ferrand, France. 168 p., 2019, Livre des résumés
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Hepatic metabolomics and transcriptomics provide valuable insights on inflammatory and metabolic features in rats fed on a high fat diet but showing similar clinical phenotyping alterations12. Journées Scientifiques du Réseau Francophone de Métabolomique et Fluxomique RFMF, May 2019, Clermont-Ferrand, France. 168 p., 2019, Livre des résumés
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hal-02162582v1
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Modeling hepatic metabolic changes during the onset of obesity from metabolomics arterio-venous blood exploration in minipigsCopenhagen Bioscience Conference 2017: Where big-data gets translated into knowledge, May 2017, Copenhague, Netherlands. 2017, Bioscience Conference 2017
Conference poster
hal-01606420v1
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Reconstruction du réseau métabolique de la tomate9. Journées scientifiques du RFMF, Jun 2015, Lille, France. 2015
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hal-02742705v1
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Reconstruction du réseau métabolique de la tomate8. Journées Scientifiques du Réseau Français de Métabolomique et Fluxomique RFMF, May 2014, Lyon, France. 1 p., 2014
Conference poster
hal-02799581v1
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Can we Trust Untargeted Metabolomics: Results of the Metabo-ring Initiative, a Large-scale Multi-instruments Inter-laboratoire Study9. Annual Conference of the Metabolomics Society, Jul 2013, Glasgow, United Kingdom. 2013, 9th Annual Conference of the Metabolomics Society
Conference poster
hal-01123136v1
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Can we trust untargeted metabolomics: first results of the metabo-ring study8. Annual International Meeting of the Metabolomics Society, Jun 2012, Washington, United States. , 2012
Conference poster
hal-01595487v1
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MetExplore, a framework for the analysis of metabolic networks: applications in the field of metabolomics data and the study of endocrine disruptors6th Copenhagen Workshop on Endocrine Disrupters, Apr 2011, Copenhagen, Denmark. 2011
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hal-02802904v1
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TrypanoCyc: a community effort towards the development of a metabolic pathway database for Trypanosoma brucei.Kinetoplastid Molecular Cell Biology Meeting (KMCB 2011), 2011, Inconnue, France. 2011
Conference poster
hal-02803549v1
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MetExplore: a web server to link metabolomic experiments and genome-scale metabolic networksJOBIM 2010, Sep 2010, Montpellier, France. , 1 p., 2010, JOBIM 2010 Montpellier, Journée Ouvertes Biologie Informatique Mathématique, Montpellier, France, 7 - 9 septembre 2010
Conference poster
hal-02821730v1
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Plant genome-scale metabolic networksScience Direct. Plant Metabolomics in full swing, 98, 2021, Advances in Botanical Research, ⟨10.1016/bs.abr.2020.09.021⟩
Book sections
hal-03149497v1
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Genome-scale metabolic networksMetabolomics: Practical Guide to Design and Analysis, 1ère édition, Chapman and Hall, 290 p., 2019, 9781315370583. ⟨10.1201/9781315370583-8⟩
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hal-02786295v1
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Understanding Protozoan Parasite Metabolism and Identifying Drug Targets through Constraint-Based ModelingComprehensive Analysis of Parasite Biology: From Metabolism to Drug Discovery, Wiley-VCH Verlag GmbH & Co. KGaA, pp.487-512, 2016, ⟨10.1002/9783527694082.ch21⟩
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hal-03318814v1
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Analysing human metabolic networks using metabolomicsMetabolomics as a Tool in Nutrition Research, Elsevier, pp.85-114, 2015, ⟨10.1016/B978-1-78242-084-2.00005-8⟩
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hal-03318813v1
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Human metabolic networks and metabolomicsMetabolomics as tool in nutrition research, Woodhead publishing Limited, 2014
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hal-01187878v1
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Qualitative modelling of metabolic networksMetabolomics coming of age with its technological diversity, 67, 2013, Advances in Botanical Research, ⟨10.1016/B978-0-12-397922-3.00012-5⟩
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hal-02803214v1
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A stable decomposition algorithm for dynamical social network analysisFabrice Guillet; Gilbert Ritschard; Djamel Abdelkader Zighed and Henri Briand. Advances in Knowledge Discovery and Management, Springer, pp.167-178, 2010, Studies in Computational Intelligence, ⟨10.1007/978-3-642-00580-0_10⟩
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Suggesting disease associations for overlooked metabolites using literature from metabolic neighbours2023
Preprints, Working Papers, ...
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New genome scale network modeling and mining workflow for detecting metabolic changes induced by exposure to chemicals2023
Preprints, Working Papers, ...
hal-04188513v1
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Pathway analysis in metabolomics: pitfalls and best practice for the use of over-representation analysis2021
Preprints, Working Papers, ...
hal-03240376v1
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FORUM: Building a Knowledge Graph from public databases and scientific literature to extract associations between chemicals and diseases2021
Preprints, Working Papers, ...
hal-03318295v1
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Combinatory therapy targeting mitochondrial oxidative phosphorylation improves efficacy of IDH mutant inhibitors in acute myeloid leukemia2020
Preprints, Working Papers, ...
hal-02935177v1
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DEXOM: Diversity-based enumeration of optimal context-specific metabolic networks2020
Preprints, Working Papers, ...
hal-02935163v1
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The GOLIATH Project: Towards an Internationally Harmonised Approach for Testing Metabolism Disrupting Compoundsinrae. 2020, pp.1-18/3480
Reports
hal-02638423v2
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Réflexion prospective interdisciplinaire. Approches prédictives pour la biologie et l’écologie. Rapport de synthèse.[0] INRA. 2019, 40 pp
Reports
hal-02791153v2
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