FL

Fabrice Legeai

68%
Libre accès
197
Documents
Affiliation actuelle
  • Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE)
Identifiants chercheurs
Contact

Présentation

Research Engineer and Project Manager in bioinformatics

Research interests : ❖ Genomics of insect crop pests and their interactions with plants ❖ Integration of omics data with Semantic Web technologies

Tools: ❖ Askomics: Integration and data extraction with Semantic Web tools ❖ AskoR: R library for RNA-Seq data analysis ❖ MTG-Link: Gap-filling with linked-reads data ❖ LRez: library for manipulation of linked-reads data ❖ Leviathan: Identification of structural variants with linked-reads data ❖ MinYS: reconstruction of symbiont genomes ❖ FEELnc: Prediction of long non-coding RNAs

Domaines de recherche

Bio-informatique [q-bio.QM]

Compétences

insect genomics data integration

Publications

Publications

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Towards identification of a holocentromere marker in the lepidopteran model <i>Spodoptera frugiperda</i>

Sylvie Gimenez , Magali Eychenne , Fabrice Legeai , Sally Gamble , Emmanuelle d'Alençon
Chromosoma, 2025, 134 (1), pp.2. ⟨10.1007/s00412-025-00828-2⟩
Article dans une revue hal-05039973 v1
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Transposable element accumulation drives genome size increase in Hylesia metabus (Lepidoptera: Saturniidae), an urticating moth species from South America

Charles Perrier , Rémi Allio , Fabrice Legeai , Mathieu Gautier , Frédéric Bénéluz et al.
Journal of Heredity, In press, pp.esae069. ⟨10.1093/jhered/esae069⟩
Article dans une revue hal-04792049 v3

Genomic insights into Spiroplasma endosymbionts that induce male-killing and protective phenotypes in the pea aphid

Hiroshi Arai , Fabrice Legeai , Daisuke Kageyama , Akiko Sugio , Jean-Christophe Simon
FEMS Microbiology Letters, 2024, 371, ⟨10.1093/femsle/fnae027⟩
Article dans une revue hal-04818782 v1
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Transcriptomic basis of sex loss in the pea aphid

M D Huguet , Stéphanie Robin , Sylvie Hudaverdian , Sylvie Tanguy , Nathalie Prunier-Leterme et al.
BMC Genomics, 2024, Bmc Genomics, 25 (1), pp.202. ⟨10.1186/s12864-023-09776-6⟩
Article dans une revue hal-04484084 v1
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Identification of a viral gene essential for the genome replication of a domesticated endogenous virus in ichneumonid parasitoid wasps

Ange Lorenzi , Fabrice Legeai , Véronique Jouan , Pierre-Alain Girard , Michael R Strand et al.
PLoS Pathogens, 2024, 20 (4), pp.e1011980. ⟨10.1371/journal.ppat.1011980⟩
Article dans une revue hal-04572197 v1
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Generic and queryable data integration schema for transcriptomics and epigenomics studies

Yael Tirlet , Matéo Boudet , Emmanuelle Becker , Fabrice Legeai , Olivier Dameron
Computational and Structural Biotechnology Journal, 2024, 23, pp.4232-4241. ⟨10.1016/j.csbj.2024.11.022⟩
Article dans une revue hal-04818860 v1
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Multiple deletions of candidate effector genes lead to the breakdown of partial grapevine resistance to downy mildew

Manon Paineau , Andrea Minio , Pere Mestre , Frédéric Fabre , Isabelle D Mazet et al.
New Phytologist, 2024, 243 (4), pp.1490-1505. ⟨10.1111/nph.19861⟩
Article dans une revue hal-04633322 v1
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Identification of transcriptional modules linked to the drought response of Brassica napus during seed development and their mitigation by early biotic stress

Grégoire Bianchetti , Vanessa Clouet , Fabrice Legeai , Cécile Baron , Kévin Gazengel et al.
Physiologia Plantarum, 2024, Physiologia Plantarum, 176 (1), pp.e14130. ⟨10.1111/ppl.14130⟩
Article dans une revue hal-04443649 v1
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Chromosome-Level Assembly and Annotation of the Pearly Heath Coenonympha arcania Butterfly Genome

Fabrice Legeai , Sandra Romain , Thibaut Capblancq , Paul Doniol-Valcroze , Mathieu Joron et al.
Genome Biology and Evolution, 2024, 16 (3), pp.evae055. ⟨10.1093/gbe/evae055⟩
Article dans une revue hal-04530573 v1
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MTG-Link: leveraging barcode information from linked-reads to assemble specific loci

Anne Guichard , Fabrice Legeai , Denis Tagu , Claire Lemaitre
BMC Bioinformatics, 2023, 24 (1), pp.284. ⟨10.1186/s12859-023-05395-w⟩
Article dans une revue hal-04166273 v1
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Genome-wide identification of lncRNAs associated with viral infection in Spodoptera frugiperda

Stéphanie Robin , Fabrice Legeai , Véronique Jouan , Mylène Ogliastro , Isabelle Darboux
Journal of General Virology, 2023, 104 (2), ⟨10.1099/jgv.0.001827⟩
Article dans une revue hal-04006610 v1
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Contrasting Evolutionary Patterns Between Sexual and Asexual Lineages in a Genomic Region Linked to Reproductive Mode Variation in the pea aphid

Maud Rimbault , Fabrice Legeai , Jean Peccoud , Lucie Mieuzet , Elsa Call et al.
Genome Biology and Evolution, 2023, 15 (9), pp.evad168. ⟨10.1093/gbe/evad168⟩
Article dans une revue hal-04232477 v1
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First chromosome scale genomes of ithomiine butterflies (Nymphalidae: Ithomiini): comparative models for mimicry genetic studies

Jérémy Gauthier , Joana Meier , Fabrice Legeai , Melanie McClure , Annabel Whibley et al.
Molecular Ecology Resources, In press, 23 (4), pp.872-885. ⟨10.1111/1755-0998.13749⟩
Article dans une revue hal-03926527 v2
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Masculinization of the X-chromosome in aphid soma and gonads

Julie Jaquiéry , Jean-Christophe Simon , Stéphanie Robin , Gautier Richard , Jean Peccoud et al.
Peer Community Journal, 2022, 2, pp.e53. ⟨10.24072/pcjournal.166⟩
Article dans une revue hal-03999192 v1
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Host-plant adaptation as a driver of incipient speciation in the fall armyworm ( Spodoptera frugiperda )

Estelle Fiteni , Karine Durand , Sylvie Gimenez , Robert L. Meagher Jr. , Robert L Meagher Jr. et al.
BMC Ecology and Evolution, 2022, 22, pp.133. ⟨10.1186/s12862-022-02090-x⟩
Article dans une revue hal-03813221 v1
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The evolutionary process of invasion in the fall armyworm (Spodoptera frugiperda)

Sudeeptha Yainna , Wee Tek Tay , Karine Durand , Estelle Fiteni , Frédérique Hilliou et al.
Scientific Reports, 2022, 12, pp.21063. ⟨10.1038/s41598-022-25529-z⟩
Article dans une revue hal-03926301 v1
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Multi-omic investigation of low-nitrogen conditional resistance to clubroot reveals Brassica napus genes involved in nitrate assimilation

Y Aigu , Stéphanie Daval , Kévin Gazengel , Nathalie Marnet , C Lariagon et al.
Frontiers in Plant Science, 2022, 13, pp.790563. ⟨10.3389/fpls.2022.790563⟩
Article dans une revue hal-03531145 v1
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Spodoptera littoralis genome mining brings insights on the dynamic of expansion of gustatory receptors in polyphagous noctuidae

Camille Meslin , Pauline Mainet , Nicolas Montagné , Stéphanie Robin , Fabrice Legeai et al.
G3, 2022, 12 (8), pp.jkac131. ⟨10.1093/g3journal/jkac131⟩
Article dans une revue hal-03713321 v1
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AskoR, A R Package for Easy RNASeq Data Analysis

Susete Alves Carvalho , Kévin Gazengel , Anthony Bretaudeau , Stéphanie Robin , Stéphanie Daval et al.
Proceedings of The 1st International Electronic Conference on Entomology, 2021, ⟨10.3390/iece-10646⟩
Article dans une revue hal-04717074 v1
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Chromosomal scale assembly of parasitic wasp genome reveals symbiotic virus colonization

Jérémy Gauthier , Hélène Boulain , Joke J F A van Vugt , Lyam Baudry , Emma Persyn et al.
Communications Biology, 2021, 4 (1), pp.1-15. ⟨10.1038/s42003-020-01623-8⟩
Article dans une revue hal-03127732 v1
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Comparative transcriptome analysis at the onset of speciation in a mimetic butterfly—The Ithomiini Melinaea marsaeus

Florence Piron-Prunier , Emma Persyn , Fabrice Legeai , Melanie Mcclure , Camille Meslin et al.
Journal of Evolutionary Biology, 2021, 34 (11), pp.1704-1721. ⟨10.1111/jeb.13940⟩
Article dans une revue hal-03381525 v1
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Global patterns in genomic diversity underpinning the evolution of insecticide resistance in the aphid crop pest Myzus persicae

Kumar Saurabh Singh , Erick Cordeiro , Bartlomiej Troczka , Adam Pym , Joanna Mackisack et al.
Communications Biology, 2021, 4 (1), pp.847. ⟨10.1038/s42003-021-02373-x⟩
Article dans une revue hal-03313531 v1
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Plant‐phenotypic changes induced by parasitoid ichnoviruses enhance the performance of both unparasitized and parasitized caterpillars

Antonino Cusumano , S Urbach , Fabrice Legeai , Marc Ravallec , Marcel Dicke et al.
Molecular Ecology, 2021, 30 (18), pp.4567-4583. ⟨10.1111/mec.16072⟩
Article dans une revue hal-03287280 v1
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Author Correction: Chromosomal scale assembly of parasitic wasp genome reveals symbiotic virus colonization

Jérémy Gauthier , Hélène Boulain , Joke J F A van Vugt , Lyam Baudry , Emma Persyn et al.
Communications Biology, 2021, 4, ⟨10.1038/s42003-021-02480-9⟩
Article dans une revue hal-04686846 v1
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Transcriptome Profiling of Starvation in the Peripheral Chemosensory Organs of the Crop Pest Spodoptera littoralis Caterpillars

Erwan Poivet , Aurore Gallot , Nicolas Montagné , Pavel Senin , Christelle Monsempès et al.
Insects, 2021, 12 (7), pp.573. ⟨10.3390/insects12070573⟩
Article dans une revue hal-03278298 v1
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LRez: C ++ API and toolkit for analyzing and managing Linked-Reads data

Pierre Morisse , Claire Lemaitre , Fabrice Legeai
Bioinformatics Advances, 2021, 1 (1), pp.1-4. ⟨10.1093/bioadv/vbab022⟩
Article dans une revue hal-03421103 v1
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RNA sequencing data for responses to drought stress and/or clubroot infection in developing seeds of Brassica napus

Grégoire Bianchetti , Vanessa Clouet , Fabrice Legeai , Cécile Baron , Kévin Gazengel et al.
Data in Brief, 2021, 38, pp.1-11. ⟨10.1016/j.dib.2021.107392⟩
Article dans une revue (data paper) hal-03379739 v1
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Proteo-Trancriptomic Analyses Reveal a Large Expansion of Metalloprotease-Like Proteins in Atypical Venom Vesicles of the Wasp Meteorus pulchricornis (Braconidae)

Jean-Luc Gatti , Maya Belghazi , Fabrice Legeai , Marc Ravallec , Marie Frayssinet et al.
Toxins, 2021, 13 (7), pp.1-36. ⟨10.3390/toxins13070502⟩
Article dans une revue hal-03292170 v1
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Functional insights from the GC-poor genomes of two aphid parasitoids, "Aphidius ervi" and "Lysiphlebus fabarum

Alice Dennis , Gabriel Ballesteros , Stéphanie Robin , Lukas Schrader , Jens Bast et al.
BMC Genomics, 2020, 21 (Art. 376), pp.1-27. ⟨10.1186/s12864-020-6764-0⟩
Article dans une revue hal-02649295 v1

Soybean aphid biotype 1 genome: Insights into the invasive biology and adaptive evolution of a major agricultural pest

Rosanna Giordano , Ravi Kiran Donthu , Aleksey Zimin , Irene Consuelo Julca Chavez , Toni Gabaldon et al.
Insect Biochemistry and Molecular Biology, 2020, 120, pp.1-24. ⟨10.1016/j.ibmb.2020.103334⟩
Article dans une revue hal-03065382 v1
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Big Genes, Small Effectors: Pea Aphid Cassette Effector Families Composed From Miniature Exons

Matthew Dommel , Jonghee Oh , Jose Carlos Huguet-Tapia , Endrick Guy , Hélène Boulain et al.
Frontiers in Plant Science, 2020, 11, pp.1-11. ⟨10.3389/fpls.2020.01230⟩
Article dans une revue hal-03065308 v1
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MinYS: mine your symbiont by targeted genome assembly in symbiotic communities

Cervin Guyomar , Wesley Delage , Fabrice Legeai , Christophe Mougel , Jean-Christophe Simon et al.
NAR Genomics and Bioinformatics, 2020, 2 (3), pp.1-11. ⟨10.1093/nargab/lqaa047⟩
Article dans une revue hal-02891885 v1
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Adaptation by copy number variation increases insecticide resistance in the fall armyworm

Sylvie Gimenez , Heba Abdelgaffar , Gaëlle Le Goff , Frédérique Hilliou , Carlos Blanco et al.
Communications Biology, 2020, 3 (1), pp.1-10. ⟨10.1038/s42003-020-01382-6⟩
Article dans une revue hal-03065279 v1
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Contrasting genomic and phenotypic outcomes of hybridization between pairs of mimetic butterfly taxa across a suture zone

Jérémy Gauthier , Donna Lisa De‐silva , Zachariah Gompert , Annabel Whibley , Céline Houssin et al.
Molecular Ecology, 2020, 29 (7), pp.1328-1343. ⟨10.1111/mec.15403⟩
Article dans une revue hal-02800429 v1
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Genomic architecture of endogenous ichnoviruses reveals distinct evolutionary pathways leading to virus domestication in parasitic wasps

Fabrice F. Legeai , Bernardo F Santos , Stéphanie Robin , Anthony Bretaudeau , Rebecca B Dikow et al.
BMC Biology, 2020, 18 (1), pp.1-23. ⟨10.1186/s12915-020-00822-3⟩
Article dans une revue hal-02918230 v1

Whole genome sequence of the soybean aphid, Aphis glycines.

Jacob A Wenger , Bryan J Cassone , Fabrice Legeai , J Spencer Johnston , Raman Bansal et al.
Insect Biochemistry and Molecular Biology, 2020, 123, pp.102917. ⟨10.1016/j.ibmb.2017.01.005⟩
Article dans une revue hal-01555244 v1
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Selection following Gene Duplication Shapes Recent Genome Evolution in the Pea Aphid Acyrthosiphon pisum

Rosa Fernández , Marina Marcet-Houben , Fabrice Legeai , Gautier Richard , Stéphanie Robin et al.
Molecular Biology and Evolution, 2020, 37 (9), pp.2601-2615. ⟨10.1093/molbev/msaa110⟩
Article dans une revue hal-03065353 v1
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The genome sequence of the grape phylloxera provides insights into the evolution, adaptation, and invasion routes of an iconic pest

Claude Rispe , Fabrice Legeai , Paul Nabity , Rosa Fernández , Arinder Arora et al.
BMC Biology, 2020, 18 (1), pp.90. ⟨10.1186/s12915-020-00820-5⟩
Article dans une revue hal-02917617 v1
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Cytonuclear interactions remain stable during allopolyploid evolution despite repeated whole-genome duplications in Brassica

Julie Ferreira de Carvalho , Jérémy Lucas , Gwenaëlle Deniot , Cyril Falentin , Olivier Filangi et al.
The Plant Journal, 2019, 98 (3), pp.434-447. ⟨10.1111/tpj.14228⟩
Article dans une revue hal-02019346 v1
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RNA interference identifies domesticated viral genes involved in assembly and trafficking of virus-derived particles in ichneumonid wasps

Ange Lorenzi , Marc Ravallec , Magali Eychenne , Véronique Jouan , Stéphanie Robin et al.
PLoS Pathogens, 2019, 15 (12), pp.e1008210. ⟨10.1371/journal.ppat.1008210⟩
Article dans une revue hal-02483831 v1
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Differential Expression of Candidate Salivary Effector Genes in Pea Aphid Biotypes With Distinct Host Plant Specificity

Hélène Boulain , Fabrice Legeai , Julie Jaquiéry , Endrick Guy , Stéphanie Morliere et al.
Frontiers in Plant Science, 2019, 10, pp.1301. ⟨10.3389/fpls.2019.01301⟩
Article dans une revue hal-02378266 v1
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Evidence for an ichnovirus machinery in parasitoids of coleopteran larvae

Stéphanie Robin , Marc Ravallec , Marie Frayssinet , James Whitfield , Véronique Jouan et al.
Virus Research, 2019, 263, pp.189-206. ⟨10.1016/j.virusres.2019.02.001⟩
Article dans une revue hal-02059774 v1

Identifying genomic hotspots of differentiation and candidate genes involved in the adaptive divergence of pea aphid host races

Pierre Nouhaud , Mathieu Gautier , Anaïs Gouin , Julie Jaquiéry , Jean Peccoud et al.
Molecular Ecology, 2018, 27 (16), pp.3287 - 3300. ⟨10.1111/mec.14799⟩
Article dans une revue hal-01892027 v1
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Genome sequence of the wheat stem sawfly, Cephus cinctus, representing an early-branching lineage of the Hymenoptera, illuminates evolution of hymenopteran chemoreceptors

Robert Robertson , Robert Waterhouse , Kimberly Walden , Livio Ruzzante , Maarten Reijnders et al.
Genome Biology and Evolution, 2018, 10 (11), pp.2997-3011. ⟨10.1093/gbe/evy232⟩
Article dans une revue hal-01926352 v1
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Multi-scale characterization of symbiont diversity in the pea aphid complex through metagenomic approaches

Cervin Guyomar , Fabrice Legeai , Emmanuelle Jousselin , Christophe Mougel , Claire Lemaitre et al.
Microbiome, 2018, 6 (1), pp.1-21. ⟨10.1186/s40168-018-0562-9⟩
Article dans une revue hal-01926402 v1
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MiR-202 controls female fecundity by regulating medaka oogenesis

Stéphanie Gay , Jérôme Bugeon , Amine Bouchareb , Laure Henry , Clara Delahaye et al.
PLoS Genetics, 2018, 14 (9), pp.1-26. ⟨10.1371/journal.pgen.1007593⟩
Article dans une revue hal-01871468 v1

First extensive characterization of the venom gland from an egg parasitoid: structure, transcriptome and functional role

Antonino Cusumano , Bernard Duvic , Véronique Jouan , Marc Ravallec , Fabrice Legeai et al.
Journal of Insect Physiology, 2018, 107, pp.68-80. ⟨10.1016/j.jinsphys.2018.02.009⟩
Article dans une revue hal-01837314 v1
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Disentangling the Causes for Faster-X Evolution in Aphids

Julie Jaquiéry , Jean Peccoud , Tiphaine Ouisse , Fabrice Legeai , Nathalie Prunier Leterme et al.
Genome Biology and Evolution, 2018, 10 (2), pp.507-520. ⟨10.1093/gbe/evy015⟩
Article dans une revue hal-03276874 v1
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Characterization and expression profiling of microRNAs in response to plant feeding in two host-plant strains of the lepidopteran pest Spodoptera frugiperda

Yves Moné , Sandra Nhim , Sylvie Gimenez , Fabrice Legeai , Imène Séninet et al.
BMC Genomics, 2018, 19 (1), pp.1-15. ⟨10.1186/s12864-018-5119-6⟩
Article dans une revue hal-01926342 v1
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Fast Evolution and Lineage-Specific Gene Family Expansions of Aphid Salivary Effectors Driven by Interactions with Host-Plants

Hélène Boulain , Fabrice Legeai , Endrick Guy , Stéphanie Morliere , Nadine Douglas et al.
Genome Biology and Evolution, 2018, 10 (6), pp.1554-1572. ⟨10.1093/gbe/evy097⟩
Article dans une revue hal-01891942 v1
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Dosage compensation and sex-specific epigenetic landscape of the X chromosome in the pea aphid.

Gautier Richard , Fabrice Legeai , Nathalie Prunier-Leterme , Anthony Bretaudeau , Denis Tagu et al.
Epigenetics & Chromatin, 2017, 10 (1), pp.1-17. ⟨10.1186/s13072-017-0137-1⟩
Article dans une revue hal-01555242 v1
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Two genomes of highly polyphagous lepidopteran pests (Spodoptera frugiperda, Noctuidae) with different host-plant ranges

Anaïs Gouin , Anthony Bretaudeau , Kiwoong Nam , Sylvie Gimenez , Jean-Marc Aury et al.
Scientific Reports, 2017, 7 (1), pp.1-12. ⟨10.1038/s41598-017-10461-4⟩
Article dans une revue hal-01633879 v1
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Genome scans on experimentally evolved populations reveal candidate regions for adaptation to plant resistance in the potato cyst nematode Globodera pallida.

Delphine Eoche-Bosy , Matthieu Gautier , Magali Esquibet , Fabrice Legeai , Anthony Bretaudeau et al.
Molecular Ecology, 2017, 26 (18), pp.4700-4711. ⟨10.1111/mec.14240⟩
Article dans une revue hal-01605681 v2
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Rapid transcriptional plasticity of duplicated gene clusters enables a clonally reproducing aphid to colonise diverse plant species

Thomas C. Mathers , Yazhou Chen , Gemy Kaithakottil , Fabrice Legeai , Sam T. Mugford et al.
Genome Biology, 2017, 18 (1), pp.27. ⟨10.1186/s13059-016-1145-3⟩
Article dans une revue hal-01500475 v1
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FEELnc: a tool for long non-coding RNA annotation and its application to the dog transcriptome

Valentin Wucher , Fabrice Legeai , Benoit Hedan , Guillaume Rizk , Laëtitia Lagoutte et al.
Nucleic Acids Research, 2017, 45 (8), pp.12. ⟨10.1093/nar/gkw1306⟩
Article dans une revue hal-01532061 v1
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Long noncoding RNA repertoire in chicken liver and adipose tissue

Kévin Muret , Christophe Klopp , Valentin Wucher , Diane Esquerré , Fabrice Legeai et al.
Genetics Selection Evolution, 2017, 49 (1), pp.6. ⟨10.1186/s12711-016-0275-0⟩
Article dans une revue hal-01431420 v1
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Expression differences in Aphidius ervi (Hymenoptera: Braconidae) females reared on different aphid host species

Gabriel I Ballesteros , Jürgen Gadau , Fabrice Legeai , Angelica Gonzalez-Gonzalez , Blas Lavandero et al.
PeerJ, 2017, 5, ⟨10.7717/peerj.3640⟩
Article dans une revue hal-02628911 v1
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Erratum to: Rapid transcriptional plasticity of duplicated gene clusters enables a clonally reproducing aphid to colonise diverse plant species

Thomas C. Mathers , Yazhou Chen , Gemy Kaithakottil , Fabrice Legeai , Sam T. Mugford et al.
Genome Biology, 2017, 18 (1), pp.63. ⟨10.1186/s13059-017-1202-6⟩
Article dans une revue hal-01588181 v1
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Differential gene expression according to race and host plant in the pea aphid

Isobel Eyres , Julie Jaquiéry , Akiko Sugio , Ludovic Duvaux , Karim Gharbi et al.
Molecular Ecology, 2016, 25 (17), pp.4197-4215. ⟨10.1111/mec.13771⟩
Article dans une revue hal-01371828 v1
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De novo transcriptome assembly of the grapevine phylloxera allows identification of genes differentially expressed between leaf- and root-feeding forms

Claude Rispe , Fabrice Legeai , Daciana Papura , Anthony Bretaudeau , Sylvie Hudaverdian et al.
BMC Genomics, 2016, 17 (1), pp.219. ⟨10.1186/s12864-016-2530-8⟩
Article dans une revue hal-01286528 v1
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Identification of long non-coding RNAs in insects genomes

Fabrice Legeai , Thomas Derrien
Current Opinion in Insect Science, 2015, 7, pp.37 - 44. ⟨10.1016/j.cois.2015.01.003⟩
Article dans une revue (article de synthèse) hal-01240461 v1
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Whole-genome re-sequencing of non-model organisms: lessons from unmapped reads

Anaïs Gouin , Fabrice Legeai , Pierre Nouhaud , Annabel Whibley , Jean-Christophe Simon et al.
Heredity, 2015, 114, pp.494-501. ⟨10.1038/hdy.2014.85⟩
Article dans une revue hal-01081094 v1

Differential expression of the chemosensory transcriptome in two populations of the stemborer Sesamia nonagrioides

Nicolas Glaser , Aurore Gallot , Fabrice Legeai , Myriam Harry , Laure Kaiser et al.
Insect Biochemistry and Molecular Biology, 2015, 65, pp.28-34. ⟨10.1016/j.ibmb.2015.07.008⟩
Article dans une revue hal-03419818 v1
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BioMAJ2Galaxy: automatic update of reference data in Galaxy using BioMAJ

Anthony Bretaudeau , Cyril Monjeaud , Yvan Le Bras , Fabrice Legeai , Olivier Collin
GigaScience, 2015, 4, pp.22. ⟨10.1186/s13742-015-0063-8⟩
Article dans une revue hal-01240449 v1
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Spodoptera frugiperda (Lepidoptera: Noctuidae) host-plant variants: two host strains or two distinct species?

Pascaline Dumas , Fabrice Legeai , Claire Lemaitre , Erwan Scaon , Marion Orsucci et al.
Genetica, 2015, 143 (3), pp.305-316. ⟨10.1007/s10709-015-9829-2⟩
Article dans une revue hal-01208780 v2
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Establishment and analysis of a reference transcriptome for Spodoptera frugiperda

Fabrice Legeai , Sylvie Gimenez , Bernard Duvic , Jean-Michel Escoubas , Anne-Sophie Gosselin Grenet et al.
BMC Genomics, 2014, 15 (1), pp.704. ⟨10.1186/1471-2164-15-704⟩
Article dans une revue hal-01058982 v1
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Genetic control of contagious asexuality in the pea aphid

Julie Jaquiéry , Jean Peccoud , Tiphaine Ouisse , Fabrice Legeai , Nathalie Prunier-Leterme et al.
PLoS Genetics, 2014, 10 (12), pp.e1004838. ⟨10.1371/journal.pgen.1004838⟩
Article dans une revue hal-01701165 v1
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A Comparison of the Olfactory Gene Repertoires of Adults and Larvae in the Noctuid Moth Spodoptera littoralis

Erwan E. Poivet , Aurore Gallot , Nicolas Montagne , Nicolas Glaser , Fabrice Legeai et al.
PLoS ONE, 2013, 8 (4), pp.e60263. ⟨10.1371/journal.pone.0060263⟩
Article dans une revue hal-01971440 v1
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A comparison of the olfactory gene repertoires of adults and larvae in the noctuid moth Spodoptera littoralis

Erwan Poivet , Aurore Gallot , Nicolas Montagné , Nicolas Glaser , Fabrice Legeai et al.
PLoS ONE, 2013, 8 (4), pp.e60263. ⟨10.1371/journal.pone.0060263⟩
Article dans une revue hal-00916952 v1
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Masculinization of the X Chromosome in the Pea Aphid

Julie Jaquiéry , Claude Rispe , Denis Roze , Fabrice Legeai , Gaël Le Trionnaire et al.
PLoS Genetics, 2013, 9 (8), pp.e1003690. ⟨10.1371/journal.pgen.1003690⟩
Article dans une revue hal-00916967 v1
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Candidate Chemosensory Genes in the Stemborer Sesamia nonagrioides

Nicolas Glaser , Aurore Gallot , Fabrice Legeai , Nicolas Montagne , Erwan E. Poivet et al.
International Journal of Biological Sciences, 2013, 9 (5), pp.481-495. ⟨10.7150/ijbs.6109⟩
Article dans une revue hal-01971488 v1

Transcriptomic profiling of the reproductive mode switch in the pea aphid in response to natural autumnal photoperiod.

Gaël Le Trionnaire , Stéphanie Jaubert-Possamai , Joël Bonhomme , Jean-Pierre Gauthier , Grégory Guernec et al.
Journal of Insect Physiology, 2012, 58 (12), pp.1517-1524. ⟨10.1016/j.jinsphys.2012.07.009⟩
Article dans une revue istex hal-00753429 v1
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TriAnnot: A Versatile and High Performance Pipeline for the Automated Annotation of Plant Genomes.

Philippe Leroy , Nicolas Guilhot , Hiroaki Sakai , Aurélien Bernard , Frédéric Choulet et al.
Frontiers in Plant Science, 2012, 3, pp.5. ⟨10.3389/fpls.2012.00005⟩
Article dans une revue hal-00753407 v1

Accelerated evolution of sex chromosomes in aphids, an X0 system.

Julie Jaquiéry , Solenn Stoeckel , Claude Rispe , Lucie Mieuzet , Fabrice Legeai et al.
Molecular Biology and Evolution, 2012, 29 (2), epub ahead of print. ⟨10.1093/molbev/msr252⟩
Article dans une revue hal-00639983 v1
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Genome scans reveal candidate regions involved in the adaptation to host plant in the pea aphid complex.

Julie Jaquiéry , Solenn Stoeckel , P. Nouhaud , L. Mieuzet , F. Mahéo et al.
Molecular Ecology, 2012, 21 (21), pp.5251-64. ⟨10.1111/mec.12048⟩
Article dans une revue istex hal-00753439 v1
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Comparison of gene repertoires and patterns of evolutionary rates in eight aphid species that differ by reproductive mode.

M. Ollivier , T. Gabaldón , J. Poulain , Frédérick F. Gavory , N. Leterme et al.
Genome Biology and Evolution, 2012, 4 (2), pp.155-67. ⟨10.1093/gbe/evr140⟩
Article dans une revue hal-00753402 v1
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Candidate chemosensory genes in female antennae of the noctuid moth Spodoptera littoralis.

Emmanuelle Jacquin-Joly , Fabrice Legeai , Nicolas Montagné , Christelle Monsempes , Marie-Christine François et al.
International Journal of Biological Sciences, 2012, 8 (7), pp.1036-50. ⟨10.7150/ijbs.4469⟩
Article dans une revue hal-00753414 v1
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Cabomba as a model for studies of early angiosperm evolution.

Aurelie C M Vialette-Guiraud , Michael Alaux , Fabrice Legeai , Cedric Finet , Pierre Chambrier et al.
Annals of Botany, 2011, 108 (4), pp.589-98. ⟨10.1093/aob/mcr088⟩
Article dans une revue hal-00855948 v1
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Genomic approach to study floral development genes in Rosa sp.

Annick Dubois , Arnaud A. Remay , Olivier Raymond , Sandrine Balzergue , Aurélie Chauvet et al.
PLoS ONE, 2011, 6 (12), ⟨10.1371/journal.pone.0028455⟩
Article dans une revue hal-00753396 v1
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An Expressed Sequence Tag collection from the male antennae of the Noctuid moth Spodoptera littoralis: a resource for olfactory and pheromone detection research.

Fabrice Legeai , Sébastien Malpel , Nicolas Montagné , Christelle Monsempes , François Cousserans et al.
BMC Genomics, 2011, 12 (86), pp.86. ⟨10.1186/1471-2164-12-86⟩
Article dans une revue hal-00723049 v1
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Extensive synteny conservation of holocentric chromosomes in Lepidoptera despite high rates of local genome rearrangements.

E. d'Alençon , H. Sezutsu , Fabrice Legeai , E. Permal , S. Bernard-Samain et al.
Proceedings of the National Academy of Sciences of the United States of America, 2010, 107 (17), pp.7680-5. ⟨10.1073/pnas.0910413107⟩
Article dans une revue inria-00537908 v1
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Analysis of virion structural components reveals vestiges of the ancestral ichnovirus genome.

Anne-Nathalie Volkoff , Véronique Jouan , Serge Urbach , Sylvie Samain , Max Bergoin et al.
PLoS Pathogens, 2010, 6 (5), pp.e1000923. ⟨10.1371/journal.ppat.1000923⟩
Article dans une revue inria-00537901 v1

Comparative analysis of the Acyrthosiphon pisum genome and expressed sequence tag-based gene sets from other aphid species.

Morgane Ollivier , Fabrice Legeai , Claude Rispe
Insect Molecular Biology, 2010, 19 Suppl 2 (s2), pp.33-45. ⟨10.1111/j.1365-2583.2009.00976.x⟩
Article dans une revue istex inria-00537902 v1
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Bioinformatic prediction, deep sequencing of microRNAs and expression analysis during phenotypic plasticity in the pea aphid, Acyrthosiphon pisum.

Fabrice Legeai , Guillaume Rizk , Thomas Walsh , Owain Edwards , Karl Gordon et al.
BMC Genomics, 2010, 11 (1), pp.281. ⟨10.1186/1471-2164-11-281⟩
Article dans une revue inserm-00482283 v1

AphidBase: a centralized bioinformatic resource for annotation of the pea aphid genome.

Fabrice Legeai , Shuji Shigenobu , Jean-Pierre Gauthier , John Colbourne , Claude Rispe et al.
Insect Molecular Biology, 2010, 19 (s2), pp.5-12. ⟨10.1111/j.1365-2583.2009.00930.x⟩
Article dans une revue hal-02658827 v1
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Transcriptomic and proteomic analyses of seasonal photoperiodism in the pea aphid.

Gaël Le Trionnaire , F. Francis , S. Jaubert-Possamai , J. Bonhomme , E. de Pauw et al.
BMC Genomics, 2009, 10, pp.456. ⟨10.1186/1471-2164-10-456⟩
Article dans une revue inria-00435791 v1

New resources for studying the rose flowering process.

F. Foucher , M. Chevalier , C. Corre , Vanessa Soufflet-Freslon , F. Legeai et al.
Genome, 2008, 51 (10), pp.827-37. ⟨10.1139/G08-067⟩
Article dans une revue hal-00729892 v1
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A physical map of the heterozygous grapevine 'Cabernet Sauvignon' allows mapping candidate genes for disease resistance

Marco Moroldo , Sophie Paillard , Raffaella Marconi , Fabrice Legeai , Aurélie Canaguier et al.
BMC Plant Biology, 2008, 8 (66), pp.1-14. ⟨10.1186/1471-2229-8-66⟩
Article dans une revue inria-00329169 v1

Large Gene Family Expansion and Variable Selective Pressures for Cathepsin B in Aphids

Claude Rispe , Mayako Kutsukabe , Vincent Doublet , Sylvie Hudaverdian , Fabrice Legeai et al.
Molecular Biology and Evolution, 2007, 25 (Oct 13), pp.5-17. ⟨10.1093/molbev/msm222⟩
Article dans une revue inria-00180087 v1
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The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.

Olivier Jaillon , Jean-Marc Aury , Benjamin Noel , Alberto Policriti , Christian Clepet et al.
Nature, 2007, 449 (7161), pp.463-7. ⟨10.1038/nature06148⟩
Article dans une revue inria-00180136 v1

AphidBase: a database for aphid genomic resources

Jean-Pierre Gauthier , Fabrice Legeai , Alain Zasadzinski , Claude Rispe , Denis Tagu
Bioinformatics, 2007, 23 (6), pp.783-784. ⟨10.1093/bioinformatics/btl682⟩
Article dans une revue inria-00180141 v1

Strong Heterogeneity in Nucleotidic Composition and Codon Bias in the Pea Aphid (Acyrthosiphon pisum) Shown by EST-Based Coding Genome Reconstruction.

Claude Rispe , Fabrice Legeai , Jean-Pierre Gauthier , Denis Tagu
Journal of Molecular Evolution, 2007, Oct 10 (4), pp.413-424. ⟨10.1007/s00239-007-9023-y⟩
Article dans une revue istex inria-00180094 v1
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Large-scale gene discovery in the pea aphid Acyrthosiphon pisum (Hemiptera)

Beatriz Sabater-Munoz , Fabrice Legeai , Claude Rispe , Joël Bonhomme , Peter Dearden et al.
Genome Biology, 2006, 7-3 (r21), pp.1-11. ⟨10.1186/gb-2006-7-3-r21⟩
Article dans une revue inria-00180157 v1

Anchoring of a large set of markers onto a BAC library for the development of a draft physical map of the grapevine genome

Didier Lamoureux , Anne Bernole , Isabelle Le Clainche , Sarah Tual , Vincent Thareau et al.
TAG Theoretical and Applied Genetics, 2006, 113 (2), pp.344-356. ⟨10.1007/s00122-006-0301-7⟩
Article dans une revue istex inria-00180148 v1

Anchoring of a large set of markers onto a BAC library for the development of a draft physical map of the grapevine genome.

D. Lamoureux , A. Bernole , I. Le Clainche , S. Tual , V. Thareau et al.
Theor Appl Genet., 2006, 113, pp.344-356
Article dans une revue hal-00108235 v1

Expressed sequence tags from the phytopathogenic fungus Botrytis cinerea

Muriel Viaud , F. Legeai , J.M. Pradier , Yves Brygoo , Frédérique Bitton et al.
European Journal of Plant Pathology, 2005, 111, pp.139-146
Article dans une revue hal-02671863 v1

Study of simple sequence repeat (SSR) markers from wheat expressed sequence tags (ESTs)

N. Nicot , V. Chiquet , B. Gandon , Laurence Amilhat , F. Legeai et al.
TAG Theoretical and Applied Genetics, 2004, 109 (4), pp.800-805. ⟨10.1007/s00122-004-1685-x⟩
Article dans une revue istex hal-02682409 v1

Predotar: a tool for rapidly screening proteomes for N-terminal targeting sequences

Ian Small , Nemo Peeters , F. Legeai , Claire Lurin
Proteomics, 2004, 4 (6), pp.1581-1590. ⟨10.1002/pmic.200300776⟩
Article dans une revue istex hal-02683504 v1

Large-scale identification of genes in the fungus Hebeloma cylindrosporum paves the way to molecular analyses of ectomycorrhizal symbiosis

R. Lambilliote , R. Cooke , Dylan Samson , Cécile Fizames , Frédéric Gaymard et al.
New Phytologist, 2004, 164 (3), pp.505-513. ⟨10.1111/j.1469-8137.2004.01185.x⟩
Article dans une revue hal-02673408 v1
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Annotated expressed sequence tags for studies of the regulation of reproductive modes in aphids

Denis Tagu , N. Prunier-Leterme , F. Legeai , J.-P Gauthier , A Duclert et al.
Insect Biochemistry and Molecular Biology, 2004, 34, pp.809 - 822. ⟨10.1016/j.ibmb.2004.05.001⟩
Article dans une revue hal-02915291 v1
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GénoPlante-Info (GPI): a collection of databases and bioinformatics resources for plant genomics

Dylan Samson , F. Legeai , Emmanuelle Karsenty , Sébastien Reboux , J.B. Veyrieras et al.
Nucleic Acids Research, 2003, 31 (1), pp.179-182. ⟨10.1093/nar/gkg060⟩
Article dans une revue hal-02682546 v1
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Understanding the limits of pangenome graphs for the analysis of large inversions in a complex of butterfly species

Sandra Romain , Fabrice Legeai , Claire Lemaitre
2024 - International Environmental and Agronomical Genomics symposium, Feb 2024, Toulouse, France. pp.1-1
Communication dans un congrès hal-04721489 v1

Multiple expansion and contraction events in two major chemosensory gene families in aphids

Sergio Gabriel Olvera-Vazquez , Xilong Chen , Camille Meslin , Yann Bourgeois , Lougmani, Célia et al.
Congrès de la Société Européenne de Biologie Evolutive, Aug 2022, Prague, Czech Republic
Communication dans un congrès anses-04546901 v1
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Intégration de données de phénotypiques, environnementales et de biodiversité à l'aide des technologies du Web Sémantique

Olivier Dameron , Yael Tirlet , Matéo Boudet , Fabrice Legeai
SYSINFO-INRAe 2022 - Journées INRAE systèmes d'information pour les données agro-environnementales, Nov 2022, Clermont-Ferrand, France
Communication dans un congrès hal-03893738 v1
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AskoR, A R Package for Easy RNASeq Data Analysis

Susete Alves Carvalho , Kévin Gazengel , Anthony Bretaudeau , Stéphanie Robin , Stéphanie Daval et al.
IECE 2021 - 1st International Electronic Conference on Entomology, Jul 2021, Virtual, France. pp.1-8, ⟨10.3390/IECE-10646⟩
Communication dans un congrès hal-03347665 v1
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LEVIATHAN: efficient discovery of large structural variants by leveraging long-range information from Linked-Reads data

Pierre Morisse , Fabrice Legeai , Claire Lemaitre
JOBIM 2021 - Journées Ouvertes en Biologie, Informatique et Mathématiques, Jul 2021, Paris, France. pp.1-8
Communication dans un congrès hal-03441874 v1
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MTG-Link: filling gaps in draft genome assemblies with linked read data

Anne Guichard , Fabrice Legeai , Denis Tagu , Claire Lemaitre
JOBIM 2021 - Journées Ouvertes Biologie, Informatique et Mathématiques, Jul 2021, Paris, France. pp.1-8
Communication dans un congrès hal-03441914 v1

Co-evolution of chloroplast and nuclear genomes in flowering plants and impact of allopolyploidy on fine tune cytonuclear interactions.

Mathieu Rousseau-Gueutin , Julie Ferreira de Carvalho , Jérémy Lucas , Gwenaëlle Deniot , Cyril Falentin et al.
International Conference on Polyploidy, Jun 2019, Ghent, Belgium
Communication dans un congrès hal-03318182 v1

The virus particles of Bathyplectes spp., parasitoids of the alfalfa weevil, are related to ichnoviruses

Stéphanie Robin , Marc Ravallec , Marie Frayssinet , James B. Whitfield , Véronique Jouan et al.
6. International Entomophagous Insects Conference, Sep 2019, Perugia, Italy
Communication dans un congrès hal-02463374 v1
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AskOmics: a user-friendly interface to Semantic Web technologies for integrating local datasets with reference resources

Xavier Garnier , Anthony Bretaudeau , Fabrice Legeai , Anne Siegel , Olivier Dameron
JOBIM 2019 - Journées Ouvertes Biologie, Informatique et Mathématiques, Jul 2019, Nantes, France. pp.1
Communication dans un congrès hal-02401750 v1

Cytonuclear interactions remain stable during allopolyploid evolution despite repeated wholegenome duplications

Julie Ferreira de Carvalho , Jérémy Lucas , Gwenaëlle Deniot , Cyril Falentin , Olivier Filangi et al.
21st Crucifer Genetics Conference on Brassica - Brassica 2018, Jul 2019, Saint Malo, France
Communication dans un congrès hal-04665569 v1

Structural and functional evolutionary dynamics of duplicated genes and genomes in nascent and natural B. napus

Mathieu Rousseau-Gueutin , Jérémy Lucas , France Denoeud , Julie Ferreira de Carvalho , Zhesi He et al.
21st Crucifer Genetics Conference on Brassica - Brassica 2018, Jul 2019, Saint-Malo, France
Communication dans un congrès hal-03318226 v1

Plant resistance and architecture for protection of pulses against pathogens

Marie-Laure Pilet-Nayel , Ambre-Aurore Josselin , Gilles Boutet , Angélique Lesné , Fabrice Legeai et al.
Transversal Symposium GIS BV, Investment for the future, Projects in plant Biology, Oct 2019, Paris, France
Communication dans un congrès hal-02737585 v1

Key Note speaker Plant resistance and architecture for protection of pulses against biotic stresses

Marie-Laure Pilet-Nayel , A-A. Josselin , Gilles Boutet , Angélique Lesné , Fabrice Legeai et al.
9. International Conference on Legume Genetics and Genomics (ICLGG 2019), Let's harness the potential of legumes, May 2019, Dijon, France
Communication dans un congrès hal-02737260 v1
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Reference-guided genome assembly in metagenomic samples

Cervin Guyomar , Wesley Delage , Fabrice Legeai , Christophe Mougel , Jean-Christophe Simon et al.
JOBIM 2019 - Journées Ouvertes Biologie, Informatique et Mathématiques, Jul 2019, Nantes, France. pp.1-8
Communication dans un congrès hal-02308257 v1

How a polyploid becomes a new species: example from the Brassica model.

Mathieu Rousseau-Gueutin , Julie Ferreira de Carvalho , J. Lucas , France Denoeud , Fabrice Legeai et al.
International Conference on Environmental and Agronomical Genomics, 2018, Paris, France
Communication dans un congrès hal-03318223 v1

Influence of nitrogen constraint on quantitative resistance to clubroot in Brassica napus

Antoine Gravot , Anne Laperche , Stéphanie Daval , Yoann Aigu , Solenn Guichard et al.
21st Crucifer Genetics Conference - Brassica - Wokshop Clubroot, 2018, Saint-Malo, France
Communication dans un congrès hal-03348628 v1

Identification of differentially expressed long non-coding RNAs (lncRNAs) in response to viral infection in S. frugiperda hemocytes

Fabrice Legeai , Stéphanie Robin , Marie Helene Ogliastro , Isabelle Darboux
10. International Workshop on Molecular Biology and Genetics of the Lepidoptera, Aug 2018, Kolympari, Greece
Communication dans un congrès hal-01988642 v1

Quantitative resistance to clubroot and interactions with abiotic stresses

Antoine Gravot , Anne Laperche , Stéphanie Daval , Yoann Aigu , Solenn Guichard et al.
IOBC-WPRS WG 'Pesticides and Beneficial Organisms', 2018, Zagreb, Croatia. pp.25-26
Communication dans un congrès hal-03349115 v1

Influence of nitrogen constraint on quantitative resistance to clubroot in Brassica napus

Antoine Gravot , Yoann Aigu , Anne Laperche , Stéphanie Daval , Solenn Guichard et al.
International Clubroot Workshop, 2018, Edmonton, Canada
Communication dans un congrès hal-03349054 v1

From diploids to a huge diversity ready-to-use for oilseed rape breeding.

Sophie Paillard , Maryse Lodé-Taburel , Gwenn Trotoux , Frederique Eber , Marie-Madeleine Gilet et al.
21st Crucifer Genetics Conference on Brassica - Brassica 2018, Jul 2018, Saint-Malo, France
Communication dans un congrès hal-03318160 v1

Cytonuclear interactions overcome inter-genomic conflict resulting from interspecific hybridization and genome doubling

Julie Ferreira de Carvalho , Jérémy Lucas , Cyril Falentin , Gwenaëlle Deniot , Olivier Filangi et al.
Second Joint Congress on Evolutionary Biology, Aug 2018, Montpellier, France
Communication dans un congrès hal-03318235 v1

Spodoptera genomes in the BIPAA information system

Stéphanie Robin , Fabrice Legeai
International Conference on Management of Destructive Agricultural Pests Spodoptera (Noctuidae), Nov 2017, Chongqing, China
Communication dans un congrès hal-04176810 v1

Integration of Linked Data into Galaxy using Askomics

Xavier Garnier , Olivier Dameron , Olivier Filangi , Fabrice Legeai , Anthony Bretaudeau
Galaxy Community Conference, Jun 2017, Montpellier, France
Communication dans un congrès hal-01576870 v1

Multi-scale characterization of symbiont diversity in the pea aphid complex through metagenomic approaches

Cervin Guyomar , Fabrice Legeai , Christophe Mougel , Claire Lemaitre , Jean-Christophe Simon
International Conference on Holobionts, Apr 2017, Paris, France
Communication dans un congrès hal-01638839 v1
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AskOmics, a web tool to integrate and query biological data using semantic web technologies

Xavier Garnier , Anthony Bretaudeau , Olivier Filangi , Fabrice Legeai , Anne Siegel et al.
JOBIM 2017 - Journées Ouvertes en Biologie, Informatique et Mathématiques, Jul 2017, Lille, France. pp.1
Communication dans un congrès hal-01577425 v1

Integrative genomics and gene networks for studying phenotypic plasticity in the pea aphid

Valentin Wucher , Fabrice Legeai , Lucas Bourneuf , Thomas Derrien , Aurore Gallot et al.
10th Arthropod Genomics Symposium, Jun 2017, Notre Dame, United States
Communication dans un congrès hal-01566438 v1

BIPAA/Askomics, a new and easy approach for querying genomics and epigenomics elements in interaction

Fabrice Legeai , Charles Bettembourg , Anthony Bretaudeau , Yvanne Chaussin , Olivier Dameron et al.
XXVth International Congress of Entomology 2016, Sep 2016, Orlando, Florida, United States
Communication dans un congrès hal-01391080 v1

Mechanisms of transfer of virulence molecules in ichneumonid wasps

Anne-Nathalie Volkoff , Apolline Pichon , Magali Eychenne , Marc Ravallec , Antoine Bézier et al.
25th International Congress of Entomology (ICE 2016), Sep 2016, Orlando, Florida, United States
Communication dans un congrès hal-01988646 v1
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Genome scans on experimentaly evolved globodera pallida populations to identify molceular basis of adaptation to GPAV(VRN) potato resistance

Delphine Eoche-Bosy , Magali Esquibet , Sylvain Fournet , Mathieu Gautier , Fabrice Legeai et al.
Joint Meeting of the Society of Nematologists and the Organization of Nematologists of Tropical America (ONTA), 2016, Jul 2016, Montreal, Canada. 387 p
Communication dans un congrès hal-01602955 v1

Recurrent domestication of viral genomes leads to different virulence strategies in ichneumonid wasps

Jean Marc Aury , Valérie Barbe , Annie Bezier , Jean-Michel Drezen , Véronique Jouan et al.
Réunion du réseau ADALEP, 2016, Paris, France
Communication dans un congrès hal-01991475 v1

Using genomic tools to unravel parasitic wasp genome evolution via acquisition of viral genomes

Anne-Nathalie Volkoff , Jean-Michel Drezen , Serge Urbach , Apolline Pichon , Véronique Jouan et al.
Arthropod Genomics Symposium, 2015, Manhattan, Kansas, United States
Communication dans un congrès hal-01991470 v1

The chemosensory transcriptome of the cotton leafworm Spodoptera littoralis

Emmanuelle Joly , Erwan Poivet , Aurore Gallot , Fabrice Legeai , Nicolas Montagné
24. Annual Meeting of the European-Chemoreception-Research-Organization (ECRO), 2015, NA, France
Communication dans un congrès hal-01208791 v1
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AskOmics : Intégration et interrogation de réseaux de régulation génomique et post-génomique

Charles Bettembourg , Olivier Dameron , Anthony Bretaudeau , Fabrice Legeai
IN OVIVE (INtégration de sources/masses de données hétérogènes et Ontologies, dans le domaine des sciences du VIVant et de l’Environnement), Institut National de Recherche en Informatique et en Automatique (INRIA). Rennes, FRA., Jun 2015, Rennes, France. pp.7
Communication dans un congrès hal-01184903 v1

Integration of miRNAs data into a gene network of the pea aphid.

Valentin Wucher , Jacques Nicolas , Fabrice F. Legeai , Hervé Seitz , Denis Tagu
7th International Symposium on Molecular Insect Science., 2014, Amsterdam, Netherlands
Communication dans un congrès hal-01566284 v1
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Long non-­‐coding RNA in the pea aphid; identification and comparative expression in sexual and asexual embryos

Fabrice Legeai , Thomas Derrien , Valentin Wucher , David Audrey , Gaël Le Trionnaire et al.
Arthropod Genomics Symposium, Jun 2014, Urbana, United States
Communication dans un congrès hal-01091304 v1

The grape phylloxera genome sequencing project

François Delmotte , Daciana Papura , Claude Rispe , Fabrice Legeai , Julie Jaquiéry et al.
6. International Phylloxera Symposium, Aug 2013, Bordeaux, France
Communication dans un congrès hal-01208725 v1
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Whole genome re-sequencing : lessons from unmapped reads

Anaïs Gouin , Pierre Nouhaud , Fabrice Legeai , Guillaume Rizk , Jean-Christophe Simon et al.
Journées Ouvertes Biologie Informatique Mathématiques, Jul 2013, Toulouse, France
Communication dans un congrès hal-00907446 v1
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A study of phylloxera transcriptomes, comparing root and leaf feeding morphs

Claude Rispe , Daciana Papura , Fabrice Legeai , Julie Jaquiéry , Anthony Bretaudeau et al.
6. International Phylloxera Symposium, Institut National de Recherche Agronomique (INRA). UMR Ecophysiologie et Génomique Fonctionnelle de la Vigne (1287)., Aug 2013, Bordeaux, France. 59 p
Communication dans un congrès hal-01208647 v1
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AphidAtlas : avancées récentes

Anthony Bretaudeau , Olivier Dameron , Fabrice Legeai , Yvan Rahbé
BAPOA 2013 MOP, Oct 2013, Montpellier, France
Communication dans un congrès hal-00913155 v1

Physical mapping and re-sequencing of a set of resistance related genes in grapevine

Marco Moroldo , Sophie Paillard , R. Marconi , Fabrice Legeai , Aurelie Canaguier et al.
17. Conference Plant and Animal Genomes, Labo/service de l'auteur, Ville service, Pays service., Jan 2009, San Diego, United States. 1 p
Communication dans un congrès hal-01462667 v1
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URGI genome annotation system:an integrated system for structural and functional genome annotation

Joelle J. Amselem , Michael Alaux , Nathalie Choisne , Nicolas Lapalu , Baptiste Brault et al.
12. Edition du colloque JOBIM : Journées Ouvertes en Biologie, Informatique et Mathématiques, Jun 2011, Paris, France. 2 p
Communication dans un congrès hal-01019754 v1

The antennal transcriptome of a moth

Emmanuelle Jacquin-Joly , Fabrice Legeai , Sebastien S. Malpel , Nicolas Montagné , Christelle Monsempes et al.
20. Congress of European Chemoreception Research Organization (ECRO-2010), Sep 2010, Avignon, France. pp.E29-E30
Communication dans un congrès hal-01001560 v1

The antennal transcriptome of a moth

Emmanuelle Jacquin-Joly , Fabrice Legeai , Sébastien Malpel , Nicolas Montagné , Christelle Monsempes et al.
The 20th Congress of the European Chemoreception Research Organisation (ECRO), Sep 2010, Avignon, France. pp.E29
Communication dans un congrès hal-00714719 v1

Prediction and analyzes of non coding RNA sequences in the pea aphid genome

Fabrice Legeai , Guillaume Rizk , T. Walsh , Owain Edwards , Jacques Nicolas et al.
Arthropods Genomics, Jun 2010, Kansas City, United States
Communication dans un congrès inria-00537927 v1

Lepido-DB, a new bioinformatic resource for the annotation and cross-comparisons of lepidopteran genomes.

Fabrice Legeai , Emmanuelle d'Alençon , François Cousserans , Hideki Sezutsu , Emmanuelle Permal et al.
The Eighth International Workshop on MOLECULAR BIOLOGY AND GENETICS OF THE LEPIDOPTERA, Aug 2009, Kolimpari, Greece
Communication dans un congrès inria-00435820 v1

GnpAnnot community annotation system: features, qualifiers, values

Stéphanie Sidibe-Bocs , Fabrice Legeai , Gaëtan Droc , Mathieu Rouard , Michael M. Alaux et al.
3. International Biocuration Conference, Apr 2009, Berlin, Germany
Communication dans un congrès hal-02758372 v1

From AphidBase and Lepido-DB to an Information System for Insect Plant pest genomics studies.

Fabrice Legeai , Jean-Pierre Gauthier , François Cousserans , Emmanuelle d'Alençon , Olivier Collin et al.
1st Workshop on Information System for Insect Pest, Nov 2009, Rennes, France
Communication dans un congrès inria-00435823 v1

Apollo: a tool for the manual annotation of the pea aphid genome

Fabrice Legeai , Jean-Pierre Gauthier , Denis Tagu
Pea Aphid Genome Annotation Workshop, Jul 2008, Princeton, United States
Communication dans un congrès inria-00329196 v1
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Discovering domestication mutations in cauliflower

Mathis Pochon , Alexis Mergez , Fabrice Legeai , Jeremy Lucas , Cyril Falentin et al.
Journées scientifiques 2025 Agroécologie et Numérique, Jan 2025, Dijon, France.
Poster de conférence cea-04932621 v1

Identification of viral gene involved in genome replication of domesticated endogenous virus in parasitoid wasp

Ange Lorenzi , Fabrice Legeai , Véronique Jouan , Pierre-Alain Girard , Michael R. Strand et al.
Jacques Monod Conference on “Virus evolution: the mutualism-antagonism continuum of virus- virus interactions”, Oct 2024, Roscoff, France
Poster de conférence hal-04873290 v1
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Establishment of pangenome graphs for the analysis and monitoring of fungal plant pathogen populations

Nicolas Lapalu , Antoine Loth , Fabrice Legeai , Ludovic Duvaux , Elisabeth Fournier et al.
ISCLB 2024 (International Symposium on Cereal Leaf Blights), Jun 2024, Zurich (CH), Switzerland. ⟨10.15454/1.5572369328961167E12⟩
Poster de conférence hal-04623680 v1
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BIPAA, Bioinformatics Platform for the Agroecosystems Arthropods.

Stéphanie Robin , Fabrice Legeai , Anthony Bretaudeau
JOBIM 2023 - Journées Ouvertes en Biologie, Informatique et Mathématiques, Jun 2023, Plouzané (Brest Métropole), France. pp.1-1, 2023
Poster de conférence hal-04176786 v1
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AskoR, an R package for easy RNA-Seq data analysis.

Susete Alves Carvalho , Kévin Gazengel , Anthony Bretaudeau , Stéphanie Robin , Stéphanie Daval et al.
Journées Ouvertes en Biologie, Informatique et Mathématiques (Jobim), Jun 2023, Tours, France. pp.263, 2018, JOBIM2023. ⟨10.1080/02664763.2018.1454894⟩
Poster de conférence hal-04720296 v1
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AskoR, an R package for easy RNA-Seq data analysis illustrated by the analysis of plant/pathogen/microbiote interactions.

Susete Alves Carvalho , Kévin Gazengel , Masanelli Sylvin , Anthony Bretaudeau , Stéphanie Robin et al.
Journées Ouvertes en Biologie, Informatique et Mathématiques (Jobim), Jul 2022, Rennes, France
Poster de conférence hal-04720279 v1

BIPAA, Bioinformatics Platform for the Agroecosystems Arthropods.

Stéphanie Robin , Anthony Bretaudeau , Fabrice Legeai
The 11th international workshop on Molecular Biology and Genetics of the Lepidoptera, Aug 2022, Kolympari, Greece
Poster de conférence hal-04176792 v1
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LRez: C++ API and toolkit for analyzing and managing Linked-Reads data

Pierre Morisse , Claire Lemaitre , Fabrice Legeai
JOBIM 2021 - Journées Ouvertes en Biologie, Informatique et Mathématiques, Jul 2021, Paris, France. pp.1
Poster de conférence hal-03441917 v1

MTG-Link: filling gaps in draft genome assemblies with linked read data

Anne Guichard , Fabrice Legeai , Arthur Le Bars , Paul Jay , Mathieu Joron et al.
Biodiversity Genomics 2020, Oct 2020, Online, France.
Poster de conférence hal-03074227 v1

MTG-Link: filling gaps in draft genome assemblies with linked read data

Anne Guichard , Fabrice Legeai , Arthur Le Bars , Paul Jay , Mathieu Joron et al.
JOBIM 2020 - Journées Ouvertes Biologie, Informatique et Mathématiques, Jun 2020, Montpellier, France.
Poster de conférence hal-03073966 v1

Functional consequences of transposable elements on duplicated gene transcription and retention in polyploid Brassica species

Julie Ferreira de Carvalho , Julien Boutte , Loeiz Maillet , Thomas Chaussepied , Sébastien Letort et al.
International Conference on Polyploidy, Jun 2019, Ghent, Belgium
Poster de conférence hal-03318194 v1

Identification and functional characterization of ovarian and maternally-inherited miRNAs in medaka

Stéphanie Gay , Jérôme Montfort , Fabrice Legeai , Thuy Thao Vi Nguyen , Thomas Desvignes et al.
7. International Workshop on the Biology of Fish Gametes, Sep 2019, Rennes, France. , pp.153-153, 2019
Poster de conférence hal-02282325 v1
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Reference guided genome assembly in metagenomic samples

Cervin Guyomar , Wesley Delage , Fabrice Legeai , Christophe Mougel , Jean-Christophe Simon et al.
RECOMB 2018 - 22nd International Conference on Research in Computational Molecular Biology, Apr 2018, Paris, France. pp.1
Poster de conférence hal-01934823 v1

BIPAA, Bioinformatics Platform for the Agroecosystems Arthropods.

Stéphanie Robin , Anthony Bretaudeau , Fabrice Legeai
Journées Ouvertes en Biologie, Informatique et Mathématiques (JOBIM), Jul 2018, Marseille (FR), France
Poster de conférence hal-04176797 v1

Une nouvelle facette du génome de poule : les genes “longs non-codants

Kévin Muret , Christophe Klopp , Valentin Wucher , Diane Esquerre , Fabrice Legeai et al.
12. Journées de la Recherche Avicole et des Palmipèdes à Foie Gras, Apr 2017, Tours, France. ITAVI - Institut Technique de l'Aviculture, Journées de la Recherche Avicole et des Palmipèdes à Foie Gras, 2017, Journées de la Recherche Avicole et des Palmipèdes à Foie Gras
Poster de conférence hal-01605848 v1
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Multi-scale characterization of symbiont diversity in the pea aphid complex through metagenomic approaches

Cervin Guyomar , Fabrice Legeai , Christophe Mougel , Claire Lemaitre , Jean-Christophe Simon
JOBIM 2017 - Journées Ouvertes en Biologie, Informatique et Mathématiques, Jul 2017, Lille, France
Poster de conférence hal-01638884 v1

Integration and query of biological datasets with Semantic Web technologies: AskOmics

Aurélie Evrard , Charles Bettembourg , Mélanie Jubault , Olivier Dameron , Olivier Filangi et al.
Journées Ouvertes Biologie, Informatique et Mathématiques (JOBIM 2016), Jun 2016, Lyon, France
Poster de conférence hal-01391087 v1
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Comparative genomic analysis of Clubroot resistance in the Brassicaceae family

Aurélie Evrard , Charles Bettembourg , Olivier Dameron , Olivier Filangi , Anthony Bretaudeau et al.
Brassica2016, Oct 2016, Melbourne, Australia.
Poster de conférence hal-01391707 v1

Long-non coding RNAs repertoire in liver and adipose tissue in chicken

Kévin Muret , Christophe Klopp , Valentin Wucher , Diane D. Esquerre , Fabrice Legeai et al.
XXIV International Plant & Animal Genome (Pag), Jan 2016, San Diego, United States. 2016
Poster de conférence hal-02799305 v1
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Improvement of the assembly of heterozygous genomes of non-model organisms

Anaïs Gouin , Anthony Bretaudeau , Emmanuelle d'Alençon , Claire Lemaitre , Fabrice Legeai
Genome Informatics, Oct 2015, Cold Spring Harbor Laboratory, United States. 2015
Poster de conférence hal-01231793 v1
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Improvement of the assembly of heterozygous genomes of non-model organisms, a case study of the genomes of two Spodoptera frugiperda host strains

Anaïs Gouin , Anthony Bretaudeau , K Labadie , Jean-Marc Aury , Emmanuelle d'Alençon et al.
Arthropod Genomics 2015, Jun 2015, Manhattan (Kansas), United States. 2015
Poster de conférence hal-01240443 v1
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How to Design a good RNA-Seq experiment in an interdisciplinary context?

Julie Aubert , Christelle Hennequet-Antier , Cyprien Guerin , Delphine Labourdette , Anne de La Foye et al.
European conference on Computational Biology, Sep 2014, Strasbourg, France. , 2014
Poster de conférence hal-01462728 v1
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Identification and correction of genome mis-assemblies due to heterozygosity

Anaïs Gouin , Anthony Bretaudeau , Claire Lemaitre , Fabrice Legeai
European Conference on Computational Biology (ECCB), Sep 2014, Strasbourg, France. , ECCB 2014, 2014
Poster de conférence hal-01092959 v1
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A tale of genome, annotations, metabolism and phylogenomics: the pea aphid genome resources

Fabrice Legeai , Stefano Colella , Jaime Huerta-Cepas , Jean-Pierre Gauthier , Augusto Vellozo et al.
10. Cold Spring Harbor Laboratory / Wellcome Trust conference on Genome Informatics, Sep 2010, Hinxton, United Kingdom. 1 p., 2010
Poster de conférence hal-01231276 v1

Assemblage de génomes

Anthony Bretaudeau , Fabrice Legeai
Principes des techniques de biologie moléculaire et génomique : 3e édition revue et augmentée, Quae, 2018, Savoir Faire, 978-2-7592-2389-3
Chapitre d'ouvrage hal-03319003 v1

La programmation

Fabrice Legeai
Principes des techniques de biologie moléculaire et génomique : 3e édition revue et augmentée, Quae, 2018, Savoir Faire, 978-2-7592-2389-3
Chapitre d'ouvrage hal-03318975 v1

Analyse des données RNA-seq (RNA-sequencing)

Stéphanie Robin , Fabrice Legeai
Principes des techniques de biologie moléculaire et génomique : 3e édition revue et augmentée, Quae, 2018, Savoir Faire, 978-2-7592-2389-3
Chapitre d'ouvrage hal-03318969 v1

Genomics of Phenotypic plastity in Aphids

Jenn A. Brisson , Julie Jaquiéry , Fabrice Legeai , Gaël Le Trionnaire , Denis Tagu
Henryk Czosnek; Murad Ghanim. Management of Insect Pests to Agriculture, Springer International Publishing, pp.65-96, 2016, 978-3-319-24049-7. ⟨10.1007/978-3-319-24049-7_3⟩
Chapitre d'ouvrage hal-01314988 v1

Whole genome sequencing projects of the plant pathogenic fungi Botrytis Cinerea and Sclerotinia Sclerotiorum

Sabine, Helma Fillinger , Joelle J. Amselem , Francois Artiguenave , Arnaud Billault , Mathias Choquer et al.
Macromolecules and secondary metabolites of grapevine and wine : fruit development, biotic and abiotic stresses, mechanisms of plant defense responses, proteins, glycoproteins, polysaccharides, polyphenolics, aroma compounds and secondar, EDITIONS TEC ET DOC, 2007, 978-2-7430-0965-9
Chapitre d'ouvrage hal-02820038 v1
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Untangling the contribution of adaptive versus non-adaptive processes in the evolution of reproductive isolation between Coenonympha butterflies

Thibaut Capblancq , Camille Roux , Frédéric Boyer , Fabrice Legeai , Mathieu Joron et al.
2024
Pré-publication, Document de travail (preprint/prepublication) hal-04850079 v1
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Identification of a viral gene essential for the genome replication of a domesticated endogenous virus in ichneumonid parasitoid wasps

Ange Lorenzi , Fabrice Legeai , Véronique Jouan , Pierre-Alain Girard , Michael R Strand et al.
2024
Pré-publication, Document de travail hal-04558930 v1

A fi rst characterization of kinetochore proteins in theholocentric insect Spodoptera frugiperda

Emmanuelle d'Alençon , Sylvie Gimenez , Magali Eychenne , Fabrice Legeai , Sally Gamble
2025
Pré-publication, Document de travail hal-04941032 v1
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MTG-Link: leveraging barcode information from linked-reads to assemble specific loci

Anne Guichard , Fabrice Legeai , Denis Tagu , Claire Lemaitre
2022
Pré-publication, Document de travail (preprint/prepublication) hal-03886951 v1

Spodoptera littoralis genome mining brings insights on the dynamic of expansion of gustatory receptors in polyphagous noctuidae

Camille Meslin , Pauline Mainet , Nicolas Montagné , Stéphanie Robin , Fabrice Legeai et al.
2021
Pré-publication, Document de travail hal-04706490 v1
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Genomic balancing selection is key to the invasive success of the fall armyworm

Sudeeptha Yainna , Wee Tek Tay , Estelle Fiteni , Fabrice Legeai , Anne-Laure Clamens et al.
2020
Pré-publication, Document de travail hal-02945606 v1
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Chromosomal resolution reveals symbiotic virus colonization of parasitic wasp genomes

Jérémy Gauthier , Hélène Boulain , Joke J.F.A. van Vugt , Lyam Baudry , Emma Persyn et al.
2020
Pré-publication, Document de travail hal-03090838 v1
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Functional insights from the GC-poor genomes of two aphid parasitoids, <em>Aphidius ervi</em> and <em>Lysiphlebus fabarum</em>

Alice B. Dennis , Gabriel I. Ballesteros , Stéphanie Robin , Lukas Schrader , Jens Bast et al.
2019
Pré-publication, Document de travail (preprint/prepublication) hal-02788571 v1
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Adaptation by copy number variation increases insecticide resistance in fall armyworms

Ki Woong Nam , Sylvie Gimenez , Frederique Hilliou , Carlos A Blanco , Sabine Hänniger et al.
2020
Pré-publication, Document de travail hal-02945633 v1

Conserved and specific genomic features of endogenous polydnaviruses revealed by whole genome sequencing of two ichneumonid wasps

Fabrice Legeai , Bernardo F. Santos , Stéphanie Robin , Anthony Bretaudeau , Rebecca B. Dikow et al.
2019
Pré-publication, Document de travail (preprint/prepublication) hal-02788577 v1

A clonally reproducing generalist aphid pest colonises diverse host plants by rapid transcriptional plasticity of duplicated gene clusters

Thomas Mathers , Yazhou Chen , Gemy Kaithakottil , Fabrice Legeai , Sam Mugford et al.
2020
Pré-publication, Document de travail (preprint/prepublication) hal-02936181 v1