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Fabrice Legeai

Bioinformatics Project manager at IGEPP (INRAE)
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Presentation

Research Engineer and Project Manager in bioinformatics Research interests : ❖ Genomics of insect crop pests and their interactions with plants ❖ Integration of omics data with Semantic Web technologies Tools: ❖ Askomics: Integration and data extraction with Semantic Web tools ❖ AskoR: R library for RNA-Seq data analysis ❖ MTG-Link: Gap-filling with linked-reads data ❖ LRez: library for manipulation of linked-reads data ❖ Leviathan: Identification of structural variants with linked-reads data ❖ MinYS: reconstruction of symbiont genomes ❖ FEELnc: Prediction of long non-coding RNAs

Research domains

Bioinformatics [q-bio.QM]

Skills

insect genomics data integration

Publications

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Identification of transcriptional modules linked to the drought response of Brassica napus during seed development and their mitigation by early biotic stress

Grégoire Bianchetti , Vanessa Clouet , Fabrice Legeai , Cécile Baron , Kévin Gazengel
Physiologia Plantarum, 2024, Physiologia Plantarum, 176 (1), pp.e14130. ⟨10.1111/ppl.14130⟩
Journal articles hal-04443649v1

Genomic insights into Spiroplasma endosymbionts that induce male-killing and protective phenotypes in the pea aphid

Hiroshi Arai , Fabrice Legeai , Daisuke Kageyama , Akiko Sugio , Jean-Christophe Simon
FEMS Microbiology Letters, 2024, ⟨10.1093/femsle/fnae027⟩
Journal articles hal-04576159v1
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Transcriptomic basis of sex loss in the pea aphid

M D Huguet , Stéphanie Robin , Sylvie Hudaverdian , Sylvie Tanguy , Nathalie Prunier-Leterme
BMC Genomics, 2024, Bmc Genomics, 25 (1), pp.202. ⟨10.1186/s12864-023-09776-6⟩
Journal articles hal-04484084v1
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Chromosome-Level Assembly and Annotation of the Pearly Heath Coenonympha arcania Butterfly Genome

Fabrice Legeai , Sandra Romain , Thibaut Capblancq , Paul Doniol-Valcroze , Mathieu Joron
Genome Biology and Evolution, 2024, pp.1-7. ⟨10.1093/gbe/evae055⟩
Journal articles hal-04530573v1
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MTG-Link: leveraging barcode information from linked-reads to assemble specific loci

Anne Guichard , Fabrice Legeai , Denis Tagu , Claire Lemaitre
BMC Bioinformatics, 2023, 24 (1), pp.284. ⟨10.1186/s12859-023-05395-w⟩
Journal articles hal-04166273v1
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Genome-wide identification of lncRNAs associated with viral infection in Spodoptera frugiperda

Stéphanie Robin , Fabrice Legeai , Véronique Jouan , Mylène Ogliastro , Isabelle Darboux
Journal of General Virology, 2023, 104 (2), ⟨10.1099/jgv.0.001827⟩
Journal articles hal-04006610v1
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Contrasting Evolutionary Patterns Between Sexual and Asexual Lineages in a Genomic Region Linked to Reproductive Mode Variation in the pea aphid

Maud Rimbault , Fabrice Legeai , Jean Peccoud , Lucie Mieuzet , Elsa Call
Genome Biology and Evolution, 2023, 15 (9), pp.1-18. ⟨10.1093/gbe/evad168⟩
Journal articles hal-04232477v1
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First chromosome scale genomes of ithomiine butterflies (Nymphalidae: Ithomiini): comparative models for mimicry genetic studies

Jérémy Gauthier , Joana Meier , Fabrice Legeai , Melanie McClure , Annabel Whibley
Molecular Ecology Resources, inPress, pp.1-14. ⟨10.1111/1755-0998.13749⟩
Journal articles hal-03926527v2
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Host-plant adaptation as a driver of incipient speciation in the fall armyworm ( Spodoptera frugiperda )

Estelle Fiteni , Karine Durand , Sylvie Gimenez , Robert L. Meagher Jr. , Fabrice Legeai
BMC Ecology and Evolution, 2022, 22, pp.133. ⟨10.1101/2022.09.30.510290⟩
Journal articles hal-03813221v1
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The evolutionary process of invasion in the fall armyworm (Spodoptera frugiperda)

Sudeeptha Yainna , Wee Tek Tay , Karine Durand , Estelle Fiteni , Frédérique Hilliou
Scientific Reports, 2022, 12, pp.21063. ⟨10.1038/s41598-022-25529-z⟩
Journal articles hal-03926301v1
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Multi-omic investigation of low-nitrogen conditional resistance to clubroot reveals Brassica napus genes involved in nitrate assimilation

Y Aigu , Stéphanie Daval , Kévin Gazengel , Nathalie Marnet , C Lariagon
Frontiers in Plant Science, 2022, 13, pp.790563. ⟨10.3389/fpls.2022.790563⟩
Journal articles hal-03531145v1
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Masculinization of the X-chromosome in aphid soma and gonads

Julie Jaquiéry , Jean-Christophe Simon , Stéphanie Robin , Gautier Richard , Jean Peccoud
Peer Community Journal, 2022, 2, pp.e53. ⟨10.24072/pcjournal.166⟩
Journal articles hal-03999192v1
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Spodoptera littoralis genome mining brings insights on the dynamic of expansion of gustatory receptors in polyphagous noctuidae

Camille Meslin , Pauline Mainet , Nicolas Montagné , Stéphanie Robin , Fabrice Legeai
G3, 2022, 12 (8), pp.jkac131. ⟨10.1093/g3journal/jkac131⟩
Journal articles hal-03713321v1
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RNA sequencing data for responses to drought stress and/or clubroot infection in developing seeds of Brassica napus

Grégoire Bianchetti , Vanessa Clouet , Fabrice Legeai , Cécile Baron , Kévin Gazengel
Data in Brief, 2021, 38, pp.1-11. ⟨10.1016/j.dib.2021.107392⟩
Journal articles hal-03379739v1
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Transcriptome Profiling of Starvation in the Peripheral Chemosensory Organs of the Crop Pest Spodoptera littoralis Caterpillars

Erwan Poivet , Aurore Gallot , Nicolas Montagné , Pavel Senin , Christelle Monsempès
Insects, 2021, 12 (7), pp.573. ⟨10.3390/insects12070573⟩
Journal articles hal-03278298v1
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LRez: C ++ API and toolkit for analyzing and managing Linked-Reads data

Pierre Morisse , Claire Lemaitre , Fabrice Legeai
Bioinformatics Advances, 2021, 1 (1), pp.1-4. ⟨10.1093/bioadv/vbab022⟩
Journal articles hal-03421103v1
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Proteo-Trancriptomic Analyses Reveal a Large Expansion of Metalloprotease-Like Proteins in Atypical Venom Vesicles of the Wasp Meteorus pulchricornis (Braconidae)

Jean-Luc Gatti , Maya Belghazi , Fabrice Legeai , Marc Ravallec , Marie Frayssinet
Toxins, 2021, 13 (7), pp.1-36. ⟨10.3390/toxins13070502⟩
Journal articles hal-03292170v1
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Comparative transcriptome analysis at the onset of speciation in a mimetic butterfly—The Ithomiini Melinaea marsaeus

Florence Piron-Prunier , Emma Persyn , Fabrice Legeai , Melanie Mcclure , Camille Meslin
Journal of Evolutionary Biology, 2021, 34 (11), pp.1704-1721. ⟨10.1111/jeb.13940⟩
Journal articles hal-03381525v1
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Global patterns in genomic diversity underpinning the evolution of insecticide resistance in the aphid crop pest Myzus persicae

Kumar Saurabh Singh , Erick Cordeiro , Bartlomiej Troczka , Adam Pym , Joanna Mackisack
Communications Biology, 2021, 4 (1), pp.847. ⟨10.1038/s42003-021-02373-x⟩
Journal articles hal-03313531v1
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Chromosomal scale assembly of parasitic wasp genome reveals symbiotic virus colonization

Jérémy Gauthier , Hélène Boulain , Joke J F A van Vugt , Lyam Baudry , Emma Persyn
Communications Biology, 2021, 4 (1), pp.1-15. ⟨10.1038/s42003-020-01623-8⟩
Journal articles hal-03127732v1
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Plant‐phenotypic changes induced by parasitoid ichnoviruses enhance the performance of both unparasitized and parasitized caterpillars

Antonino Cusumano , S Urbach , Fabrice Legeai , Marc Ravallec , Marcel Dicke
Molecular Ecology, 2021, 30 (18), pp.4567-4583. ⟨10.1111/mec.16072⟩
Journal articles hal-03287280v1
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Contrasting genomic and phenotypic outcomes of hybridization between pairs of mimetic butterfly taxa across a suture zone

Jérémy Gauthier , Donna Lisa De‐silva , Zachariah Gompert , Annabel Whibley , Céline Houssin
Molecular Ecology, 2020, 29 (7), pp.1328-1343. ⟨10.1111/mec.15403⟩
Journal articles hal-02800429v1
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Functional insights from the GC-poor genomes of two aphid parasitoids, "Aphidius ervi" and "Lysiphlebus fabarum"

Alice Dennis , Gabriel Ballesteros , Stéphanie Robin , Lukas Schrader , Jens Bast
BMC Genomics, 2020, 21 (Art. 376), pp.1-27. ⟨10.1186/s12864-020-6764-0⟩
Journal articles hal-02649295v1
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Adaptation by copy number variation increases insecticide resistance in the fall armyworm

Sylvie Gimenez , Heba Abdelgaffar , Gaelle Le Goff , Frédérique Hilliou , Carlos Blanco
Communications Biology, 2020, 3 (1), pp.1-10. ⟨10.1038/s42003-020-01382-6⟩
Journal articles hal-03065279v1

Whole genome sequence of the soybean aphid, Aphis glycines.

Jacob A Wenger , Bryan J Cassone , Fabrice Legeai , J Spencer Johnston , Raman Bansal
Insect Biochemistry and Molecular Biology, 2020, 123, pp.102917. ⟨10.1016/j.ibmb.2017.01.005⟩
Journal articles hal-01555244v1
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Selection following Gene Duplication Shapes Recent Genome Evolution in the Pea Aphid Acyrthosiphon pisum

Rosa Fernández , Marina Marcet-Houben , Fabrice Legeai , Gautier Richard , Stéphanie Robin
Molecular Biology and Evolution, 2020, 37 (9), pp.2601-2615. ⟨10.1093/molbev/msaa110⟩
Journal articles hal-03065353v1
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The genome sequence of the grape phylloxera provides insights into the evolution, adaptation, and invasion routes of an iconic pest

Claude Rispe , Fabrice Legeai , Paul Nabity , Rosa Fernández , Arinder Arora
BMC Biology, 2020, 18 (1), pp.90. ⟨10.1186/s12915-020-00820-5⟩
Journal articles hal-02917617v1

Soybean aphid biotype 1 genome: Insights into the invasive biology and adaptive evolution of a major agricultural pest

Rosanna Giordano , Ravi Kiran Donthu , Aleksey Zimin , Irene Consuelo Julca Chavez , Toni Gabaldon
Insect Biochemistry and Molecular Biology, 2020, 120, pp.1-24. ⟨10.1016/j.ibmb.2020.103334⟩
Journal articles hal-03065382v1
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Big Genes, Small Effectors: Pea Aphid Cassette Effector Families Composed From Miniature Exons

Matthew Dommel , Jonghee Oh , Jose Carlos Huguet-Tapia , Endrick Guy , Hélène Boulain
Frontiers in Plant Science, 2020, 11, pp.1-11. ⟨10.3389/fpls.2020.01230⟩
Journal articles hal-03065308v1
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MinYS: mine your symbiont by targeted genome assembly in symbiotic communities

Cervin Guyomar , Wesley Delage , Fabrice Legeai , Christophe Mougel , Jean-Christophe Simon
NAR Genomics and Bioinformatics, 2020, 2 (3), pp.1-11. ⟨10.1093/nargab/lqaa047⟩
Journal articles hal-02891885v1
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RNA interference identifies domesticated viral genes involved in assembly and trafficking of virus-derived particles in ichneumonid wasps

Ange Lorenzi , Marc Ravallec , Magali Eychenne , Véronique Jouan , Stéphanie Robin
PLoS Pathogens, 2019, 15 (12), pp.e1008210. ⟨10.1371/journal.ppat.1008210⟩
Journal articles hal-02483831v1
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Differential Expression of Candidate Salivary Effector Genes in Pea Aphid Biotypes With Distinct Host Plant Specificity

Hélène Boulain , Fabrice Legeai , Julie Jaquiéry , Endrick Guy , Stéphanie Morliere
Frontiers in Plant Science, 2019, 10, pp.1301. ⟨10.3389/fpls.2019.01301⟩
Journal articles hal-02378266v1
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Evidence for an ichnovirus machinery in parasitoids of coleopteran larvae

Stéphanie Robin , Marc Ravallec , Marie Frayssinet , James Whitfield , Véronique Jouan
Virus Research, 2019, 263, pp.189-206. ⟨10.1016/j.virusres.2019.02.001⟩
Journal articles hal-02059774v1
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Cytonuclear interactions remain stable during allopolyploid evolution despite repeated whole-genome duplications in Brassica

Julie Ferreira de Carvalho , Jérémy Lucas , Gwenaëlle Deniot , Cyril Falentin , Olivier Filangi
Plant Journal, 2019, 98 (3), pp.434-447. ⟨10.1111/tpj.14228⟩
Journal articles hal-02019346v1

First extensive characterization of the venom gland from an egg parasitoid: structure, transcriptome and functional role

Antonino Cusumano , Bernard Duvic , Véronique Jouan , Marc Ravallec , Fabrice Legeai
Journal of Insect Physiology, 2018, 107, pp.68-80. ⟨10.1016/j.jinsphys.2018.02.009⟩
Journal articles hal-01837314v1

Disentangling the Causes for Faster-X Evolution in Aphids

Julie Jaquiéry , Jean Peccoud , Tiphaine Ouisse , Fabrice Legeai , Nathalie Prunier-Leterme
Genome Biology and Evolution, 2018, 10 (2), pp.507-520. ⟨10.1093/gbe/evy015⟩
Journal articles hal-03276874v1
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Fast Evolution and Lineage-Specific Gene Family Expansions of Aphid Salivary Effectors Driven by Interactions with Host-Plants

Hélène Boulain , Fabrice Legeai , Endrick Guy , Stéphanie Morliere , Nadine Douglas
Genome Biology and Evolution, 2018, 10 (6), pp.1554-1572. ⟨10.1093/gbe/evy097⟩
Journal articles hal-01891942v1
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Characterization and expression profiling of microRNAs in response to plant feeding in two host-plant strains of the lepidopteran pest Spodoptera frugiperda

Yves Moné , Sandra Nhim , Sylvie Gimenez , Fabrice Legeai , Imène Séninet
BMC Genomics, 2018, 19 (1), pp.1-15. ⟨10.1186/s12864-018-5119-6⟩
Journal articles hal-01926342v1
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MiR-202 controls female fecundity by regulating medaka oogenesis

Stéphanie Gay , Jérôme Bugeon , Amine Bouchareb , Laure Henry , Clara Delahaye
PLoS Genetics, 2018, 14 (9), pp.1-26. ⟨10.1371/journal.pgen.1007593⟩
Journal articles hal-01871468v1
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Genome sequence of the wheat stem sawfly, Cephus cinctus, representing an early-branching lineage of the Hymenoptera, illuminates evolution of hymenopteran chemoreceptors

Robert Robertson , Robert Waterhouse , Kimberly Walden , Livio Ruzzante , Maarten Reijnders
Genome Biology and Evolution, 2018, 10 (11), pp.2997-3011. ⟨10.1093/gbe/evy232⟩
Journal articles hal-01926352v1
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Multi-scale characterization of symbiont diversity in the pea aphid complex through metagenomic approaches

Cervin Guyomar , Fabrice Legeai , Emmanuelle Jousselin , Christophe Mougel , Claire Lemaitre
Microbiome, 2018, 6 (1), pp.1-21. ⟨10.1186/s40168-018-0562-9⟩
Journal articles hal-01926402v1

Identifying genomic hotspots of differentiation and candidate genes involved in the adaptive divergence of pea aphid host races

Pierre Nouhaud , Mathieu Gautier , Anaïs Gouin , Julie Jaquiéry , Jean Peccoud
Molecular Ecology, 2018, 27 (16), pp.3287 - 3300. ⟨10.1111/mec.14799⟩
Journal articles hal-01892027v1
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Expression differences in Aphidius ervi (Hymenoptera: Braconidae) females reared on different aphid host species

Gabriel I Ballesteros , Jürgen Gadau , Fabrice Legeai , Angelica Gonzalez-Gonzalez , Blas Lavandero
PeerJ, 2017, 5, ⟨10.7717/peerj.3640⟩
Journal articles hal-02628911v1
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Long noncoding RNA repertoire in chicken liver and adipose tissue

Kévin Muret , Christophe C. Klopp , Valentin Wucher , Diane Esquerré , Fabrice Legeai
Genetics Selection Evolution, 2017, 49 (1), pp.6. ⟨10.1186/s12711-016-0275-0⟩
Journal articles hal-01431420v1
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Rapid transcriptional plasticity of duplicated gene clusters enables a clonally reproducing aphid to colonise diverse plant species

Thomas C. Mathers , Yazhou Chen , Gemy Kaithakottil , Fabrice Legeai , Sam T. Mugford
Genome Biology, 2017, 18 (1), pp.27. ⟨10.1186/s13059-016-1145-3⟩
Journal articles hal-01500475v1
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FEELnc: a tool for long non-coding RNA annotation and its application to the dog transcriptome

Valentin Wucher , Fabrice Legeai , Benoit Hedan , Guillaume Rizk , Laëtitia Lagoutte
Nucleic Acids Research, 2017, 45 (8), pp.12. ⟨10.1093/nar/gkw1306⟩
Journal articles hal-01532061v1
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Genome scans on experimentally evolved populations reveal candidate regions for adaptation to plant resistance in the potato cyst nematode Globodera pallida.

Delphine Eoche-Bosy , Matthieu Gautier , Magali Esquibet , Fabrice Legeai , Anthony Bretaudeau
Molecular Ecology, 2017, 26 (18), pp.4700-4711. ⟨10.1111/mec.14240⟩
Journal articles hal-01605681v2
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Two genomes of highly polyphagous lepidopteran pests (Spodoptera frugiperda, Noctuidae) with different host-plant ranges

Anaïs Gouin , Anthony Bretaudeau , Kiwoong Nam , Sylvie Gimenez , Jean-Marc Aury
Scientific Reports, 2017, 7 (1), pp.1-12. ⟨10.1038/s41598-017-10461-4⟩
Journal articles hal-01633879v1
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Erratum to: Rapid transcriptional plasticity of duplicated gene clusters enables a clonally reproducing aphid to colonise diverse plant species

Thomas C. Mathers , Yazhou Chen , Gemy Kaithakottil , Fabrice Legeai , Sam T. Mugford
Genome Biology, 2017, 18 (1), pp.63. ⟨10.1186/s13059-017-1202-6⟩
Journal articles hal-01588181v1
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Dosage compensation and sex-specific epigenetic landscape of the X chromosome in the pea aphid.

Gautier Richard , Fabrice Legeai , Nathalie Prunier-Leterme , Anthony Bretaudeau , Denis Tagu
Epigenetics & Chromatin, 2017, 10 (1), pp.1-17. ⟨10.1186/s13072-017-0137-1⟩
Journal articles hal-01555242v1
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De novo transcriptome assembly of the grapevine phylloxera allows identification of genes differentially expressed between leaf- and root-feeding forms

Claude Rispe , Fabrice Legeai , Daciana Papura , Anthony Bretaudeau , Sylvie Hudaverdian
BMC Genomics, 2016, 17 (1), pp.219. ⟨10.1186/s12864-016-2530-8⟩
Journal articles hal-01286528v1
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Differential gene expression according to race and host plant in the pea aphid

Isobel Eyres , Julie Jaquiéry , Akiko Sugio , Ludovic Duvaux , Karim Gharbi
Molecular Ecology, 2016, 25 (17), pp.4197-4215. ⟨10.1111/mec.13771⟩
Journal articles hal-01371828v1
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Identification of long non-coding RNAs in insects genomes

Fabrice Legeai , Thomas Derrien
Current Opinion in Insect Science, 2015, 7, pp.37 - 44. ⟨10.1016/j.cois.2015.01.003⟩
Journal articles hal-01240461v1
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BioMAJ2Galaxy: automatic update of reference data in Galaxy using BioMAJ

Anthony Bretaudeau , Cyril Monjeaud , Yvan Le Bras , Fabrice Legeai , Olivier Collin
GigaScience, 2015, 4, pp.22. ⟨10.1186/s13742-015-0063-8⟩
Journal articles hal-01240449v1

Differential expression of the chemosensory transcriptome in two populations of the stemborer Sesamia nonagrioides

Nicolas Glaser , Aurore Gallot , Fabrice Legeai , Myriam Harry , Laure Kaiser
Insect Biochemistry and Molecular Biology, 2015, 65, pp.28-34. ⟨10.1016/j.ibmb.2015.07.008⟩
Journal articles hal-03419818v1
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Spodoptera frugiperda (Lepidoptera: Noctuidae) host-plant variants: two host strains or two distinct species?

Pascaline Dumas , Fabrice Legeai , Claire Lemaitre , Erwan Scaon , Marion Orsucci
Genetica, 2015, 143 (3), pp.305-316. ⟨10.1007/s10709-015-9829-2⟩
Journal articles hal-01208780v2
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Whole-genome re-sequencing of non-model organisms: lessons from unmapped reads

Anaïs Gouin , Fabrice Legeai , Pierre Nouhaud , Annabel Whibley , Jean-Christophe Simon
Heredity, 2015, 114, pp.494-501. ⟨10.1038/hdy.2014.85⟩
Journal articles hal-01081094v1
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Establishment and analysis of a reference transcriptome for Spodoptera frugiperda

Fabrice Legeai , Sylvie Gimenez , Bernard Duvic , Jean-Michel Escoubas , Anne-Sophie Gosselin Grenet
BMC Genomics, 2014, 15 (1), pp.704. ⟨10.1186/1471-2164-15-704⟩
Journal articles hal-01058982v1
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Genetic control of contagious asexuality in the pea aphid

Julie Jaquiéry , Jean Peccoud , Tiphaine Ouisse , Fabrice Legeai , Nathalie Prunier-Leterme
PLoS Genetics, 2014, 10 (12), pp.e1004838. ⟨10.1371/journal.pgen.1004838⟩
Journal articles hal-01701165v1
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A comparison of the olfactory gene repertoires of adults and larvae in the noctuid moth Spodoptera littoralis

Erwan Poivet , Aurore Gallot , Nicolas Montagné , Nicolas Glaser , Fabrice Legeai
PLoS ONE, 2013, 8 (4), pp.e60263. ⟨10.1371/journal.pone.0060263⟩
Journal articles hal-00916952v1
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Masculinization of the X Chromosome in the Pea Aphid

Julie Jaquiéry , Claude Rispe , Denis Roze , Fabrice Legeai , Gaël Le Trionnaire
PLoS Genetics, 2013, 9 (8), pp.e1003690. ⟨10.1371/journal.pgen.1003690⟩
Journal articles hal-00916967v1
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Candidate Chemosensory Genes in the Stemborer Sesamia nonagrioides

Nicolas Glaser , Aurore Gallot , Fabrice Legeai , Nicolas Montagne , Erwan E. Poivet
International Journal of Biological Sciences, 2013, 9 (5), pp.481-495. ⟨10.7150/ijbs.6109⟩
Journal articles hal-01971488v1
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A Comparison of the Olfactory Gene Repertoires of Adults and Larvae in the Noctuid Moth Spodoptera littoralis

Erwan E. Poivet , Aurore Gallot , Nicolas Montagne , Nicolas Glaser , Fabrice Legeai
PLoS ONE, 2013, 8 (4), pp.e60263. ⟨10.1371/journal.pone.0060263⟩
Journal articles hal-01971440v1
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TriAnnot: A Versatile and High Performance Pipeline for the Automated Annotation of Plant Genomes.

Philippe Leroy , Nicolas Guilhot , Hiroaki Sakai , Aurélien Bernard , Frédéric Choulet
Frontiers in Plant Science, 2012, 3, pp.5. ⟨10.3389/fpls.2012.00005⟩
Journal articles hal-00753407v1

Transcriptomic profiling of the reproductive mode switch in the pea aphid in response to natural autumnal photoperiod.

Gaël Le Trionnaire , Stéphanie Jaubert-Possamai , Joël Bonhomme , Jean-Pierre Gauthier , Grégory Guernec
Journal of Insect Physiology, 2012, 58 (12), pp.1517-1524. ⟨10.1016/j.jinsphys.2012.07.009⟩
Journal articles hal-00753429v1

Accelerated evolution of sex chromosomes in aphids, an X0 system.

Julie Jaquiéry , Solenn Stoeckel , Claude Rispe , Lucie Mieuzet , Fabrice Legeai
Molecular Biology and Evolution, 2012, 29 (2), epub ahead of print. ⟨10.1093/molbev/msr252⟩
Journal articles hal-00639983v1
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Genome scans reveal candidate regions involved in the adaptation to host plant in the pea aphid complex.

Julie Jaquiéry , Solenn Stoeckel , P. Nouhaud , L. Mieuzet , F. Mahéo
Molecular Ecology, 2012, 21 (21), pp.5251-64. ⟨10.1111/mec.12048⟩
Journal articles hal-00753439v1
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Comparison of gene repertoires and patterns of evolutionary rates in eight aphid species that differ by reproductive mode.

M. Ollivier , T. Gabaldón , J. Poulain , Frédérick F. Gavory , N. Leterme
Genome Biology and Evolution, 2012, 4 (2), pp.155-67. ⟨10.1093/gbe/evr140⟩
Journal articles hal-00753402v1
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Candidate chemosensory genes in female antennae of the noctuid moth Spodoptera littoralis.

Emmanuelle Jacquin-Joly , Fabrice Legeai , Nicolas Montagné , Christelle Monsempes , Marie-Christine François
International Journal of Biological Sciences, 2012, 8 (7), pp.1036-50. ⟨10.7150/ijbs.4469⟩
Journal articles hal-00753414v1
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Cabomba as a model for studies of early angiosperm evolution.

Aurelie C M Vialette-Guiraud , Michael Alaux , Fabrice Legeai , Cedric Finet , Pierre Chambrier
Annals of Botany, 2011, 108 (4), pp.589-98. ⟨10.1093/aob/mcr088⟩
Journal articles hal-00855948v1
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Genomic approach to study floral development genes in Rosa sp.

Annick Dubois , Arnaud A. Remay , Olivier Raymond , Sandrine Balzergue , Aurélie Chauvet
PLoS ONE, 2011, 6 (12), ⟨10.1371/journal.pone.0028455⟩
Journal articles hal-00753396v1
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An Expressed Sequence Tag collection from the male antennae of the Noctuid moth Spodoptera littoralis: a resource for olfactory and pheromone detection research.

Fabrice Legeai , Sébastien Malpel , Nicolas Montagné , Christelle Monsempes , François Cousserans
BMC Genomics, 2011, 12 (86), pp.86. ⟨10.1186/1471-2164-12-86⟩
Journal articles hal-00723049v1

AphidBase: a centralized bioinformatic resource for annotation of the pea aphid genome.

Fabrice Legeai , Shuji Shigenobu , Jean-Pierre Gauthier , John Colbourne , Claude Rispe
Insect Molecular Biology, 2010, 19 (s2), pp.5-12. ⟨10.1111/j.1365-2583.2009.00930.x⟩
Journal articles hal-02658827v1
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Bioinformatic prediction, deep sequencing of microRNAs and expression analysis during phenotypic plasticity in the pea aphid, Acyrthosiphon pisum.

Fabrice Legeai , Guillaume Rizk , Thomas Walsh , Owain Edwards , Karl Gordon
BMC Genomics, 2010, 11 (1), pp.281. ⟨10.1186/1471-2164-11-281⟩
Journal articles inserm-00482283v1
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Extensive synteny conservation of holocentric chromosomes in Lepidoptera despite high rates of local genome rearrangements.

E. d'Alençon , H. Sezutsu , Fabrice Legeai , E. Permal , S. Bernard-Samain
Proceedings of the National Academy of Sciences of the United States of America, 2010, 107 (17), pp.7680-5. ⟨10.1073/pnas.0910413107⟩
Journal articles inria-00537908v1

Comparative analysis of the Acyrthosiphon pisum genome and expressed sequence tag-based gene sets from other aphid species.

Morgane Ollivier , Fabrice Legeai , Claude Rispe
Insect Molecular Biology, 2010, 19 Suppl 2 (s2), pp.33-45. ⟨10.1111/j.1365-2583.2009.00976.x⟩
Journal articles inria-00537902v1
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Analysis of virion structural components reveals vestiges of the ancestral ichnovirus genome.

Anne-Nathalie Volkoff , Véronique Jouan , Serge Urbach , Sylvie Samain , Max Bergoin
PLoS Pathogens, 2010, 6 (5), pp.e1000923. ⟨10.1371/journal.ppat.1000923⟩
Journal articles inria-00537901v1
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Transcriptomic and proteomic analyses of seasonal photoperiodism in the pea aphid.

Gaël Le Trionnaire , F. Francis , S. Jaubert-Possamai , J. Bonhomme , E. de Pauw
BMC Genomics, 2009, 10, pp.456. ⟨10.1186/1471-2164-10-456⟩
Journal articles inria-00435791v1

New resources for studying the rose flowering process.

F. Foucher , M. Chevalier , C. Corre , Vanessa Soufflet-Freslon , F. Legeai
Genome, 2008, 51 (10), pp.827-37. ⟨10.1139/G08-067⟩
Journal articles hal-00729892v1
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A physical map of the heterozygous grapevine 'Cabernet Sauvignon' allows mapping candidate genes for disease resistance

Marco Moroldo , Sophie Paillard , Raffaella Marconi , Fabrice Legeai , Aurélie Canaguier
BMC Plant Biology, 2008, 8 (66), pp.1-14. ⟨10.1186/1471-2229-8-66⟩
Journal articles inria-00329169v1

Large Gene Family Expansion and Variable Selective Pressures for Cathepsin B in Aphids

Claude Rispe , Mayako Kutsukabe , Vincent Doublet , Sylvie Hudaverdian , Fabrice Legeai
Molecular Biology and Evolution, 2007, 25 (Oct 13), pp.5-17. ⟨10.1093/molbev/msm222⟩
Journal articles inria-00180087v1

AphidBase: a database for aphid genomic resources

Jean-Pierre Gauthier , Fabrice Legeai , Alain Zasadzinski , Claude Rispe , Denis Tagu
Bioinformatics, 2007, 23 (6), pp.783-784. ⟨10.1093/bioinformatics/btl682⟩
Journal articles inria-00180141v1

Strong Heterogeneity in Nucleotidic Composition and Codon Bias in the Pea Aphid (Acyrthosiphon pisum) Shown by EST-Based Coding Genome Reconstruction.

Claude Rispe , Fabrice Legeai , Jean-Pierre Gauthier , Denis Tagu
Journal of Molecular Evolution, 2007, Oct 10 (4), pp.413-424. ⟨10.1007/s00239-007-9023-y⟩
Journal articles inria-00180094v1
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The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.

Olivier Jaillon , Jean-Marc Aury , Benjamin Noel , Alberto Policriti , Christian Clepet
Nature, 2007, 449 (7161), pp.463-7. ⟨10.1038/nature06148⟩
Journal articles inria-00180136v1

Anchoring of a large set of markers onto a BAC library for the development of a draft physical map of the grapevine genome

Didier Lamoureux , Anne Bernole , Isabelle Le Clainche , Sarah Tual , Vincent Thareau
TAG Theoretical and Applied Genetics, 2006, 113 (2), pp.344-356. ⟨10.1007/s00122-006-0301-7⟩
Journal articles inria-00180148v1

Anchoring of a large set of markers onto a BAC library for the development of a draft physical map of the grapevine genome.

D. Lamoureux , A. Bernole , I. Le Clainche , S. Tual , V. Thareau
Theor Appl Genet., 2006, 113, pp.344-356
Journal articles hal-00108235v1
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Large-scale gene discovery in the pea aphid Acyrthosiphon pisum (Hemiptera)

Beatriz Sabater-Munoz , Fabrice Legeai , Claude Rispe , Joël Bonhomme , Peter Dearden
Genome Biology, 2006, 7-3 (r21), pp.1-11. ⟨10.1186/gb-2006-7-3-r21⟩
Journal articles inria-00180157v1

Expressed sequence tags from the phytopathogenic fungus Botrytis cinerea

Muriel Viaud , F. Legeai , J.M. Pradier , Yves Brygoo , Frédérique Bitton
European Journal of Plant Pathology, 2005, 111, pp.139-146
Journal articles hal-02671863v1

Predotar: a tool for rapidly screening proteomes for N-terminal targeting sequences

Ian Small , Nemo Peeters , F. Legeai , Claire Lurin
Proteomics, 2004, 4 (6), pp.1581-1590. ⟨10.1002/pmic.200300776⟩
Journal articles hal-02683504v1

Large-scale identification of genes in the fungus Hebeloma cylindrosporum paves the way to molecular analyses of ectomycorrhizal symbiosis

R. Lambilliote , R. Cooke , Dylan Samson , Cécile Fizames , Frédéric Gaymard
New Phytologist, 2004, 164 (3), pp.505-513. ⟨10.1111/j.1469-8137.2004.01185.x⟩
Journal articles hal-02673408v1
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Annotated expressed sequence tags for studies of the regulation of reproductive modes in aphids

Denis Tagu , N. Prunier-Leterme , F. Legeai , J.-P Gauthier , A Duclert
Insect Biochemistry and Molecular Biology, 2004, 34, pp.809 - 822. ⟨10.1016/j.ibmb.2004.05.001⟩
Journal articles hal-02915291v1

Study of simple sequence repeat (SSR) markers from wheat expressed sequence tags (ESTs)

N. Nicot , V. Chiquet , B. Gandon , Laurence Amilhat , F. Legeai
TAG Theoretical and Applied Genetics, 2004, 109 (4), pp.800-805. ⟨10.1007/s00122-004-1685-x⟩
Journal articles hal-02682409v1
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GénoPlante-Info (GPI): a collection of databases and bioinformatics resources for plant genomics

Dylan Samson , F. Legeai , Emmanuelle Karsenty , Sébastien Reboux , J.B. Veyrieras
Nucleic Acids Research, 2003, 31 (1), pp.179-182. ⟨10.1093/nar/gkg060⟩
Journal articles hal-02682546v1

Multiple expansion and contraction events in two major chemosensory gene families in aphids

Sergio Gabriel Olvera-Vazquez , Xilong Chen , Camille Meslin , Yann Bourgeois , Lougmani, Célia
Congrès de la Société Européenne de Biologie Evolutive, Aug 2022, Prague, Czech Republic
Conference papers anses-04546901v1
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Intégration de données de phénotypiques, environnementales et de biodiversité à l'aide des technologies du Web Sémantique

Olivier Dameron , Yael Tirlet , Matéo Boudet , Fabrice Legeai
SYSINFO-INRAe 2022 - Journées INRAE systèmes d'information pour les données agro-environnementales, Nov 2022, Clermont-Ferrand, France
Conference papers hal-03893738v1
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AskoR, A R Package for Easy RNASeq Data Analysis

Susete Alves Carvalho , Kévin Gazengel , Anthony Bretaudeau , Stéphanie Robin , Stéphanie Daval
IECE 2021 - 1st International Electronic Conference on Entomology, Jul 2021, Virtual, France. pp.1-8, ⟨10.3390/IECE-10646⟩
Conference papers hal-03347665v1
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MTG-Link: filling gaps in draft genome assemblies with linked read data

Anne Guichard , Fabrice Legeai , Denis Tagu , Claire Lemaitre
JOBIM 2021 - Journées Ouvertes Biologie, Informatique et Mathématiques, Jul 2021, Paris, France. pp.1-8
Conference papers hal-03441914v1
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LEVIATHAN: efficient discovery of large structural variants by leveraging long-range information from Linked-Reads data

Pierre Morisse , Fabrice Legeai , Claire Lemaitre
JOBIM 2021 - Journées Ouvertes en Biologie, Informatique et Mathématiques, Jul 2021, Paris, France. pp.1-8
Conference papers hal-03441874v1

The virus particles of Bathyplectes spp., parasitoids of the alfalfa weevil, are related to ichnoviruses

Stéphanie Robin , Marc Ravallec , Marie Frayssinet , James B. Whitfield , Véronique Jouan
6. International Entomophagous Insects Conference, Sep 2019, Perugia, Italy
Conference papers hal-02463374v1
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AskOmics: a user-friendly interface to Semantic Web technologies for integrating local datasets with reference resources

Xavier Garnier , Anthony Bretaudeau , Fabrice Legeai , Anne Siegel , Olivier Dameron
JOBIM 2019 - Journées Ouvertes Biologie, Informatique et Mathématiques, Jul 2019, Nantes, France. pp.1
Conference papers hal-02401750v1

Key Note speaker Plant resistance and architecture for protection of pulses against biotic stresses

Marie-Laure Pilet-Nayel , A-A. Josselin , Gilles Boutet , Angélique Lesné , Fabrice Legeai
9. International Conference on Legume Genetics and Genomics (ICLGG 2019), Let's harness the potential of legumes, May 2019, Dijon, France
Conference papers hal-02737260v1

Plant resistance and architecture for protection of pulses against pathogens

Marie-Laure Pilet-Nayel , Ambre-Aurore Josselin , Gilles Boutet , Angélique Lesné , Fabrice Legeai
Transversal Symposium GIS BV, Investment for the future, Projects in plant Biology, Oct 2019, Paris, France
Conference papers hal-02737585v1
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Reference-guided genome assembly in metagenomic samples

Cervin Guyomar , Wesley Delage , Fabrice Legeai , Christophe Mougel , Jean-Christophe Simon
JOBIM 2019 - Journées Ouvertes Biologie, Informatique et Mathématiques, Jul 2019, Nantes, France. pp.1-8
Conference papers hal-02308257v1

From diploids to a huge diversity ready-to-use for oilseed rape breeding.

Sophie Paillard , Maryse Lodé-Taburel , Gwenn Trotoux , Frederique Eber , Marie-Madeleine Gilet
21st Crucifer Genetics Conference on Brassica - Brassica 2018, Jul 2018, Saint-Malo, France
Conference papers hal-03318160v1

Quantitative resistance to clubroot and interactions with abiotic stresses

Antoine Gravot , Anne Laperche , Stéphanie Daval , Yoann Aigu , Solenn Guichard
IOBC-WPRS WG 'Pesticides and Beneficial Organisms', 2018, Zagreb, Croatia. pp.25-26
Conference papers hal-03349115v1

Influence of nitrogen constraint on quantitative resistance to clubroot in Brassica napus

Antoine Gravot , Yoann Aigu , Anne Laperche , Stéphanie Daval , Solenn Guichard
International Clubroot Workshop, 2018, Edmonton, Canada
Conference papers hal-03349054v1

Influence of nitrogen constraint on quantitative resistance to clubroot in Brassica napus

Antoine Gravot , Anne Laperche , Stéphanie Daval , Yoann Aigu , Solenn Guichard
21st Crucifer Genetics Conference - Brassica - Wokshop Clubroot, 2018, Saint-Malo, France
Conference papers hal-03348628v1

Identification of differentially expressed long non-coding RNAs (lncRNAs) in response to viral infection in S. frugiperda hemocytes

Fabrice Legeai , Stéphanie Robin , Marie Helene Ogliastro , Isabelle Darboux
10. International Workshop on Molecular Biology and Genetics of the Lepidoptera, Aug 2018, Kolympari, Greece
Conference papers hal-01988642v1

Cytonuclear interactions overcome inter-genomic conflict resulting from interspecific hybridization and genome doubling

Julie Ferreira de Carvalho , Jérémy Lucas , Cyril Falentin , Gwenaëlle Deniot , Olivier Filangi
Second Joint Congress on Evolutionary Biology, Aug 2018, Montpellier, France
Conference papers hal-03318235v1

How a polyploid becomes a new species: example from the Brassica model.

Mathieu Rousseau-Gueutin , Julie Ferreira de Carvalho , J. Lucas , France Denoeud , Fabrice Legeai
International Conference on Environmental and Agronomical Genomics, 2018, Paris, France
Conference papers hal-03318223v1

Integration of Linked Data into Galaxy using Askomics

Xavier Garnier , Olivier Dameron , Olivier Filangi , Fabrice Legeai , Anthony Bretaudeau
Galaxy Community Conference, Jun 2017, Montpellier, France
Conference papers hal-01576870v1

Multi-scale characterization of symbiont diversity in the pea aphid complex through metagenomic approaches

Cervin Guyomar , Fabrice Legeai , Christophe Mougel , Claire Lemaitre , Jean-Christophe Simon
International Conference on Holobionts, Apr 2017, Paris, France
Conference papers hal-01638839v1

Integrative genomics and gene networks for studying phenotypic plasticity in the pea aphid

Valentin Wucher , Fabrice Legeai , Lucas Bourneuf , Thomas Derrien , Aurore Gallot
10th Arthropod Genomics Symposium, Jun 2017, Notre Dame, United States
Conference papers hal-01566438v1
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AskOmics, a web tool to integrate and query biological data using semantic web technologies

Xavier Garnier , Anthony Bretaudeau , Olivier Filangi , Fabrice Legeai , Anne Siegel
JOBIM 2017 - Journées Ouvertes en Biologie, Informatique et Mathématiques, Jul 2017, Lille, France. pp.1
Conference papers hal-01577425v1

Spodoptera genomes in the BIPAA information system

Stéphanie Robin , Fabrice Legeai
International Conference on Management of Destructive Agricultural Pests Spodoptera (Noctuidae), Nov 2017, Chongqing, China
Conference papers hal-04176810v1

Mechanisms of transfer of virulence molecules in ichneumonid wasps

Anne-Nathalie Volkoff , Apolline Pichon , Magali Eychenne , Marc Ravallec , Antoine Bézier
25. International Congress of Entomology (ICE 2016), Sep 2016, Orlando, Florida, United States
Conference papers hal-01988646v1

BIPAA/Askomics, a new and easy approach for querying genomics and epigenomics elements in interaction

Fabrice Legeai , Charles Bettembourg , Anthony Bretaudeau , Yvanne Chaussin , Olivier Dameron
XXVth International Congress of Entomology 2016, Sep 2016, Orlando, Florida, United States
Conference papers hal-01391080v1
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Genome scans on experimentaly evolved globodera pallida populations to identify molceular basis of adaptation to GPAV(VRN) potato resistance

Delphine Eoche-Bosy , Magali Esquibet , Sylvain Fournet , Mathieu Gautier , Fabrice Legeai
Joint Meeting of the Society of Nematologists and the Organization of Nematologists of Tropical America (ONTA), 2016, Jul 2016, Montreal, Canada. 387 p
Conference papers hal-01602955v1

Recurrent domestication of viral genomes leads to different virulence strategies in ichneumonid wasps

Jean Marc Aury , Valérie Barbe , Annie Bezier , Jean-Michel Drezen , Véronique Jouan
Réunion du réseau ADALEP, 2016, Paris, France
Conference papers hal-01991475v1

The chemosensory transcriptome of the cotton leafworm Spodoptera littoralis

Emmanuelle Joly , Erwan Poivet , Aurore Gallot , Fabrice Legeai , Nicolas Montagné
24. Annual Meeting of the European-Chemoreception-Research-Organization (ECRO), 2015, NA, France
Conference papers hal-01208791v1

Using genomic tools to unravel parasitic wasp genome evolution via acquisition of viral genomes

Anne-Nathalie Volkoff , Jean-Michel Drezen , Serge Urbach , Apolline Pichon , Véronique Jouan
Arthropod Genomics Symposium, 2015, Manhattan, Kansas, United States
Conference papers hal-01991470v1
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AskOmics : Intégration et interrogation de réseaux de régulation génomique et post-génomique

Charles Bettembourg , Olivier Dameron , Anthony Bretaudeau , Fabrice Legeai
IN OVIVE (INtégration de sources/masses de données hétérogènes et Ontologies, dans le domaine des sciences du VIVant et de l’Environnement), Institut National de Recherche en Informatique et en Automatique (INRIA). Rennes, FRA., Jun 2015, Rennes, France. pp.7
Conference papers hal-01184903v1
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Long non-­‐coding RNA in the pea aphid; identification and comparative expression in sexual and asexual embryos

Fabrice Legeai , Thomas Derrien , Valentin Wucher , David Audrey , Gaël Le Trionnaire
Arthropod Genomics Symposium, Jun 2014, Urbana, United States
Conference papers hal-01091304v1
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AphidAtlas : avancées récentes

Anthony Bretaudeau , Olivier Dameron , Fabrice Legeai , Yvan Rahbé
BAPOA 2013 MOP, Oct 2013, Montpellier, France
Conference papers hal-00913155v1
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A study of phylloxera transcriptomes, comparing root and leaf feeding morphs

Claude Rispe , Daciana Papura , Fabrice Legeai , Julie Jaquiéry , Anthony Bretaudeau
6. International Phylloxera Symposium, Institut National de Recherche Agronomique (INRA). UMR Ecophysiologie et Génomique Fonctionnelle de la Vigne (1287)., Aug 2013, Bordeaux, France. 59 p
Conference papers hal-01208647v1
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Whole genome re-sequencing : lessons from unmapped reads

Anaïs Gouin , Pierre Nouhaud , Fabrice Legeai , Guillaume Rizk , Jean-Christophe Simon
Journées Ouvertes Biologie Informatique Mathématiques, Jul 2013, Toulouse, France
Conference papers hal-00907446v1

The grape phylloxera genome sequencing project

François Delmotte , Daciana Papura , Claude Rispe , Fabrice Legeai , Julie Jaquiéry
6. International Phylloxera Symposium, Aug 2013, Bordeaux, France
Conference papers hal-01208725v1
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URGI genome annotation system:an integrated system for structural and functional genome annotation

Joelle J. Amselem , Michael Alaux , Nathalie Choisne , Nicolas Lapalu , Baptiste Brault
12. Edition du colloque JOBIM : Journées Ouvertes en Biologie, Informatique et Mathématiques, Jun 2011, Paris, France. 2 p
Conference papers hal-01019754v1

Prediction and analyzes of non coding RNA sequences in the pea aphid genome

Fabrice Legeai , Guillaume Rizk , T. Walsh , Owain Edwards , Jacques Nicolas
Arthropods Genomics, Jun 2010, Kansas City, United States
Conference papers inria-00537927v1

The antennal transcriptome of a moth

Emmanuelle Jacquin-Joly , Fabrice Legeai , Sébastien Malpel , Nicolas Montagné , Christelle Monsempes
The 20th Congress of the European Chemoreception Research Organisation (ECRO), Sep 2010, Avignon, France. pp.E29
Conference papers hal-00714719v1

GnpAnnot community annotation system: features, qualifiers, values

Stéphanie Sidibe-Bocs , Fabrice Legeai , Gaëtan Droc , Mathieu Rouard , Michael M. Alaux
3. International Biocuration Conference, Apr 2009, Berlin, Germany
Conference papers hal-02758372v1

From AphidBase and Lepido-DB to an Information System for Insect Plant pest genomics studies.

Fabrice Legeai , Jean-Pierre Gauthier , François Cousserans , Emmanuelle d'Alençon , Olivier Collin
1st Workshop on Information System for Insect Pest, Nov 2009, Rennes, France
Conference papers inria-00435823v1

Physical mapping and re-sequencing of a set of resistance related genes in grapevine

Marco Moroldo , Sophie Paillard , R. Marconi , Fabrice Legeai , Aurelie Canaguier
17. Conference Plant and Animal Genomes, Labo/service de l'auteur, Ville service, Pays service., Jan 2009, San Diego, United States. 1 p
Conference papers hal-01462667v1

Lepido-DB, a new bioinformatic resource for the annotation and cross-comparisons of lepidopteran genomes.

Fabrice Legeai , Emmanuelle d'Alençon , François Cousserans , Hideki Sezutsu , Emmanuelle Permal
The Eighth International Workshop on MOLECULAR BIOLOGY AND GENETICS OF THE LEPIDOPTERA, Aug 2009, Kolimpari, Greece
Conference papers inria-00435820v1

Apollo: a tool for the manual annotation of the pea aphid genome

Fabrice Legeai , Jean-Pierre Gauthier , Denis Tagu
Pea Aphid Genome Annotation Workshop, Jul 2008, Princeton, United States
Conference papers inria-00329196v1
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BIPAA, Bioinformatics Platform for the Agroecosystems Arthropods.

Stéphanie Robin , Fabrice Legeai , Anthony Bretaudeau
JOBIM 2023 - Journées Ouvertes en Biologie, Informatique et Mathématiques, Jun 2023, Plouzané (Brest Métropole), France. pp.1-1, 2023
Conference poster hal-04176786v1

BIPAA, Bioinformatics Platform for the Agroecosystems Arthropods.

Stéphanie Robin , Anthony Bretaudeau , Fabrice Legeai
The 11th international workshop on Molecular Biology and Genetics of the Lepidoptera, Aug 2022, Kolympari, Greece
Conference poster hal-04176792v1
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LRez: C++ API and toolkit for analyzing and managing Linked-Reads data

Pierre Morisse , Claire Lemaitre , Fabrice Legeai
JOBIM 2021 - Journées Ouvertes en Biologie, Informatique et Mathématiques, Jul 2021, Paris, France. pp.1
Conference poster hal-03441917v1

MTG-Link: filling gaps in draft genome assemblies with linked read data

Anne Guichard , Fabrice Legeai , Arthur Le Bars , Paul Yann Jay , Mathieu Joron
Biodiversity Genomics 2020, Oct 2020, Online, France.
Conference poster hal-03074227v1

MTG-Link: filling gaps in draft genome assemblies with linked read data

Anne Guichard , Fabrice Legeai , Arthur Le Bars , Paul Yann Jay , Mathieu Joron
JOBIM 2020 - Journées Ouvertes Biologie, Informatique et Mathématiques, Jun 2020, Montpellier, France
Conference poster hal-03073966v1

Identification and functional characterization of ovarian and maternally-inherited miRNAs in medaka

Stéphanie Gay , Jérôme Montfort , Fabrice Legeai , Thuy Thao Vi Nguyen , Thomas Desvignes
7. International Workshop on the Biology of Fish Gametes, Sep 2019, Rennes, France. , pp.153-153, 2019
Conference poster hal-02282325v1

BIPAA, Bioinformatics Platform for the Agroecosystems Arthropods.

Stéphanie Robin , Anthony Bretaudeau , Fabrice Legeai
Journées Ouvertes en Biologie, Informatique et Mathématiques (JOBIM), Jul 2018, Marseille (FR), France
Conference poster hal-04176797v1
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Reference guided genome assembly in metagenomic samples

Cervin Guyomar , Wesley Delage , Fabrice Legeai , Christophe Mougel , Jean-Christophe Simon
RECOMB 2018 - 22nd International Conference on Research in Computational Molecular Biology, Apr 2018, Paris, France. pp.1
Conference poster hal-01934823v1

Une nouvelle facette du génome de poule : les genes “longs non-codants"

Kévin Muret , Christophe C. Klopp , Valentin Wucher , Diane Esquerre , Fabrice Legeai
12. Journées de la Recherche Avicole et des Palmipèdes à Foie Gras, Apr 2017, Tours, France. ITAVI - Institut Technique de l'Aviculture, Journées de la Recherche Avicole et des Palmipèdes à Foie Gras, 2017, Journées de la Recherche Avicole et des Palmipèdes à Foie Gras
Conference poster hal-01605848v1
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Multi-scale characterization of symbiont diversity in the pea aphid complex through metagenomic approaches

Cervin Guyomar , Fabrice Legeai , Christophe Mougel , Claire Lemaitre , Jean-Christophe Simon
JOBIM 2017 - Journées Ouvertes en Biologie, Informatique et Mathématiques, Jul 2017, Lille, France
Conference poster hal-01638884v1

Long-non coding RNAs repertoire in liver and adipose tissue in chicken

Kévin Muret , Christophe C. Klopp , Valentin Wucher , Diane D. Esquerre , Fabrice Legeai
XXIV International Plant & Animal Genome (Pag), Jan 2016, San Diego, United States. 2016
Conference poster hal-02799305v1
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Improvement of the assembly of heterozygous genomes of non-model organisms

Anaïs Gouin , Anthony Bretaudeau , Emmanuelle d'Alençon , Claire Lemaitre , Fabrice Legeai
Genome Informatics, Oct 2015, Cold Spring Harbor Laboratory, United States. 2015
Conference poster hal-01231793v1
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Improvement of the assembly of heterozygous genomes of non-model organisms, a case study of the genomes of two Spodoptera frugiperda host strains

Anaïs Gouin , Anthony Bretaudeau , K Labadie , Jean-Marc Aury , Emmanuelle d'Alençon
Arthropod Genomics 2015, Jun 2015, Manhattan (Kansas), United States. 2015
Conference poster hal-01240443v1
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How to Design a good RNA-Seq experiment in an interdisciplinary context?

Julie Aubert , Christelle Hennequet-Antier , Cyprien Guerin , Delphine Labourdette , Anne de La Foye
European conference on Computational Biology, Sep 2014, Strasbourg, France. , 2014
Conference poster hal-01462728v1
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Identification and correction of genome mis-assemblies due to heterozygosity

Anaïs Gouin , Anthony Bretaudeau , Claire Lemaitre , Fabrice Legeai
European Conference on Computational Biology (ECCB), Sep 2014, Strasbourg, France. , ECCB 2014, 2014
Conference poster hal-01092959v1
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A tale of genome, annotations, metabolism and phylogenomics: the pea aphid genome resources

Fabrice Legeai , Stefano Colella , Jaime Huerta-Cepas , Jean-Pierre Gauthier , Augusto Vellozo
10. Cold Spring Harbor Laboratory / Wellcome Trust conference on Genome Informatics, Sep 2010, Hinxton, United Kingdom. 1 p., 2010
Conference poster hal-01231276v1

La programmation

Fabrice Legeai
Principes des techniques de biologie moléculaire et génomique : 3e édition revue et augmentée, Quae, 2018, Savoir Faire, 978-2-7592-2389-3
Book sections hal-03318975v1

Assemblage de génomes

Anthony Bretaudeau , Fabrice Legeai
Principes des techniques de biologie moléculaire et génomique : 3e édition revue et augmentée, Quae, 2018, Savoir Faire, 978-2-7592-2389-3
Book sections hal-03319003v1

Analyse des données RNA-seq (RNA-sequencing)

Stéphanie Robin , Fabrice Legeai
Principes des techniques de biologie moléculaire et génomique : 3e édition revue et augmentée, Quae, 2018, Savoir Faire, 978-2-7592-2389-3
Book sections hal-03318969v1

Genomics of Phenotypic plastity in Aphids

Jenn A. Brisson , Julie Jaquiéry , Fabrice Legeai , Gaël Le Trionnaire , Denis Tagu
Henryk Czosnek; Murad Ghanim. Management of Insect Pests to Agriculture, Springer International Publishing, pp.65-96, 2016, 978-3-319-24049-7. ⟨10.1007/978-3-319-24049-7_3⟩
Book sections hal-01314988v1

Whole genome sequencing projects of the plant pathogenic fungi Botrytis Cinerea and Sclerotinia Sclerotiorum

Sabine, Helma Fillinger , Joelle J. Amselem , Francois Artiguenave , Arnaud Billault , Mathias Choquer
Macromolecules and secondary metabolites of grapevine and wine : fruit development, biotic and abiotic stresses, mechanisms of plant defense responses, proteins, glycoproteins, polysaccharides, polyphenolics, aroma compounds and secondar, EDITIONS TEC ET DOC, 2007, 978-2-7430-0965-9
Book sections hal-02820038v1
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MTG-Link: leveraging barcode information from linked-reads to assemble specific loci

Anne Guichard , Fabrice Legeai , Denis Tagu , Claire Lemaitre
2022
Preprints, Working Papers, ... hal-03886951v1
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Chromosomal resolution reveals symbiotic virus colonization of parasitic wasp genomes

Jérémy Gauthier , Hélène Boulain , Joke J.F.A. van Vugt , Lyam Baudry , Emma Persyn
2020
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