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Federica Calevro

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**Federica Calevro-Eisenlohr** ORCID: 0000-0001-7856-9617 IdHAL: federica-calevro ### **Positions** Since Sept. 2020 INRAE Research Director (DR2), BF2i Unit (INRAE – INSA Lyon) Lyon, France 2004-2020 Associate Professor, Department of Biosciences (INSA Lyon) and BF2i Unit, Lyon, France 2001-2004 Temporary Lecturer and Research Assistant, Department of Biosciences (INSA Lyon) and BF2i Unit, Lyon, France **Other appointments or responsabilities** Since Jan. 2021 INSA Lyon Directors’ Board Since Jan. 2021 Head of the BF2i Unit, Lyon, France Since Jan. 2021 Member (elected) of the scientific advisory board of the INRAE Plant Health and Environment (SPE) Division 2018-present Member of the pedagogic and orientation advisory board of the E2M2 (Evolution, Ecosystems, Microbiology &amp; Modeling) Doctoral School, University of Lyon 2017-present Co-coordinator of the French Aphid research network (BAPOA, more than 230 members in France, Belgium and Switzerland) of the INRAE SPE Division 2015-present Leader of the Trophic Symbioses team (SymT), BF2i Unit, Lyon 2015-2020 Deputy Head of the BF2i Unit, Lyon 2012-2020 Director of the Biology teaching service and member of the Executive Committe of the Department of Biosciences, INSA Lyon ### **Education and Training** 2018 Accreditation to supervise research (French HDR), INSA Lyon and University of Lyon 2000-2001 Postdoctoral Fellow, Pasteur Institute of Lille, Lille, France 1999-2000 Postdoctoral Fellow WHO, International Agency of Research on Cancer (IARC), Lyon, France 1995-1998 PhD, Biology (Cell and Developmental Biology) and Research Assistant, Department of Physiology and Biochemistry, University of Pisa, Italy 1998 Visiting Scientist, Brain Research Institute, University of Bremen, Germany 1997 Visiting Scientist, Department of Biochemistry, University of Bremen, Germany 1996 Professional Qualification (Biologist), University of Pisa, Italy, summa cum laude (50/50 cum laude) 1995 Diploma of Laurea, Molecular and Developmental Biology, University of Pisa, Italy, summa cum laude (110/110 cum laude) ### **Awards** 2000-2001 Director’s Fellow from the Pasteur Institute of Lille (Post-doc position) 1999-2000 WHO Fellowship (Post-doc position at IARC) 1998 Brain Research Institute Fellowship (visit to Bremen University, G. Roth lab) 1997 EMBO Short term Fellowship (visit to Bremen University, D. Beyersmann lab) 1997 Doctoral Mobility Fellowship from the University of Pisa (visit to Bremen University) 1995-1998 Doctoral Fellowship from the Italian National Agency for new technologies, Energy and sustainable Economic development (ENEA) 1994-1995 Pre-Graduate Fellowship from University of Pisa (1-year laboratory training) ### **Supervision of graduate students and post-doc fellows** ### Since 1995: ### 7 Postdocs ### 7 PhD students (degrees obtained in 2004, 2008, 2010, 2011, 2016, 2020, 2021) 6 have been recruited as Scientists (5 permanent positions/1 post-doc). 2 PhD projects are ongoing. ### 20 Master Students (11 M2 level and 9 M1 level). ### 3 students from University Institutes (*e.g.* IUT). ### **Teaching** ### Since 2020: INSA-Lyon, 12 h/year: Molecular genetics. ### 2001-2020: INSA-Lyon. 200-220 h/year: Anatomy, Biotechnology, Cell biology, Molecular genetics. ### 1995-1998: University of Pisa. 50 h/year: Molecular biology, Molecular toxicology, Comparative anatomy. **Fundings** 43 funded research projects: 2 International, 4 European, 2 IDEX and 6 ANR Programs, 1 France-Génomique grant, 1 Agropolis Foundation grant, 1 SPE-INRAE grant, 4 regional grants, 4 INSA Bonus, 4 INSA Invited Professorships, 4 FR BioEEnViS grants, 4 Investment Programs, 6 projects with industry (including 1 ANR). ### **Scientific Impact and other scientific output** ***Publications:*** 50 original publications, 2 invited reviews, 6 invited contributions to book chapters, 2323 citations, H-index 24, i10-index 33. ***Metabolic databases for arthropod genomes (most recent):*** 1) **DakvicCyc**, <http://arthropodacyc.cycadsys.org/DAKVI/>, *Daktulosphaira vitifoliae*, doi: 10.1186/s12915-020-00820-5 ; 2) **OruabCyc** et **AthroCyc**, <http://arthropodacyc.cycadsys.org/ORUAB/> et <http://arthropodacyc.cycadsys.org/ATHRO/>, *Orussus abietinus* et *Athalia rosae*, doi: 10.1093/gbe/**,** 3) **SitorCyc**, <http://arthropodacyc.cycadsys.org/SITOR/>, *Sitophilus oryzae*, doi: 10.1186/s12915-021-01158-2; **ArtSymbioCyc** (<http://artsymbiocyc.cycadsys.org/>) project containing the reconstruction of the integrated symbiotic metabolism between arthropods and their symbiotic or mutualistic bacteria, private. ***Tools (most recent):*** GReNaDIne: Data-Driven Approaches to Infer Gene Regulatory Networks in Python. <https://grenadine.readthedocs.io/en/latest/> ***Organization of meetings (most important*):** Joint 10th International Symbiosis Society &amp; 3rd International Conference on Holobionts (Lyon, July 2022); Annual Entomophagous meeting (2017, Lyon); Annual meetings of the Aphid French Network: 2010 and 2012 (Lyon), 2018 (Rennes) and 2022 (Nice); Colloque de Biologie de l’Insecte (16th edition, 2010, Lyon); Lyon’s International Multidisciplinary Meeting on Post-Genomics (5 editions, from 2006 to 2010, Lyon). ***Organization of practical courses:*** « Insect cell cultures », Aphid French Network (Bordeaux, October 2019); « Isolation of aphid bacteriocytes as a platform for transcriptomic analyses », HMicMac ANR grant (May 2017, Lyon); « RNAi in aphids: feeding and injection techniques », Aphid French Network (March 2008, Lyon). ***Ad hoc reviewer for Grant Organizations.*** Western University (Canada); FWO (Belgium); HRZZ (Croatian Science Foundation); CNR (Italy); ANR (France); FranceAgriMer (France); INRAE SPE research grants (France); Research Federation BioEEnViS University of Lyon (France); BQR (Bonus Qualité Recherche) INSA Lyon (France). ***Ad hoc reviewer for journals.*** Apoptosis, Arch. Insect Biochem. Physiol., BMC Biol., BMC Genomics, Cell Death Differ., Cell Rep., Current Biol., Cytom. Part A, Entomol. Exp. Appl., Environ. Microbiome, Eur. J. Entomol., FEMS Microbiol. Ecol., Insect Biochem. Mol. Biol., Insect Mol. Biol., Insect Sci., Insects, Int. J. Mol. Sci., iScience, J. Pest Sci., Microbiome, Microbiol. Spectr., Mol. Ecol., PNAS, Peptides, PlosOne, Sci. Rep., ISME J. ***Member of University selection committees (France).* INSA Lyon**: « Physiology » in 2012, « Insect symbiosis » in 2013, President of the jury « Insect Genomics » in 2015, « Symbiotic network modeling » in 2018, Coordinator of the jury « Microbes and Adaptation » in 2021, « Developmental genetics » in 2021. **University Claude Bernard Lyon1**: « Environmental and molecular microbiology » in 2012, « Plant physiology » in 2017. **University of Dijon:** « Invertebrate physiology » in 2015, **University of Nice**: « Host-Microbes interactions » in 2010 and 2012.

Publications

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Ensemble Learning Based Gene Regulatory Network Inference

S. Peignier , Baptiste Sorin , Federica Calevro
International Journal on Artificial Intelligence Tools, 2023, 32 (5), pp.113-120. ⟨10.1142/S0218213023600059⟩
Journal articles hal-04044951v1
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GReNaDIne: A Data-Driven Python Library to Infer Gene Regulatory Networks from Gene Expression Data

Pauline Schmitt , Baptiste Sorin , Timothée Frouté , Nicolas Parisot , Federica Calevro
Genes, 2023, 14 (2), pp.269. ⟨10.3390/genes14020269⟩
Journal articles hal-04045297v1
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Gene Self-Expressive Networks as a Generalization-Aware Tool to Model Gene Regulatory Networks

Sergio Peignier , Federica Calevro
Biomolecules, 2023, 13 (3), pp.526. ⟨10.3390/biom13030526⟩
Journal articles hal-04154047v1
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Discovery of an Insect Neuroactive Helix Ring Peptide from Ant Venom

Valentine Barassé , Laurence Jouvensal , Guillaume Boy , Arnaud Billet , Steven Ascoët
Toxins, 2023, 15 (10), pp.600. ⟨10.3390/toxins15100600⟩
Journal articles hal-04390519v1
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Detection of Aphids on Hyperspectral Images Using One-Class SVM and Laplacian of Gaussians

Sergio Peignier , Virginie Lacotte , Marie-Gabrielle Duport , Patrice Baa-Puyoulet , Jean-Christophe Simon
Remote Sensing, 2023, 15 (8), pp.2103. ⟨10.3390/rs15082103⟩
Journal articles hal-04122402v1
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Editorial: Symbiotic organs in insects: development, metabolism, and physiological regulation

Federica Calevro , Patrick Callaerts , Yu Matsuura , Anna Michalik
Frontiers in Physiology, 2023, 14, pp.1248654. ⟨10.3389/fphys.2023.1248654⟩
Journal articles hal-04225297v1
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Compartmentalized into Bacteriocytes but Highly Invasive: the Puzzling Case of the Co-Obligate Symbiont Serratia symbiotica in the Aphid Periphyllus lyropictus

François Renoz , Mélanie Ribeiro Lopes , Karen Gaget , Gabrielle Duport , Marie-Christine Eloy
Microbiology Spectrum, 2022, ⟨10.1128/spectrum.00457-22⟩
Journal articles hal-03704068v1
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Bacteriocyte plasticity in pea aphids facing amino acid stress or starvation during development

Mélanie Ribeiro Lopes , Karen Gaget , François Renoz , Marie-Gabrielle Duport , Severine Balmand
Frontiers in Physiology, 2022, 13, pp.982920. ⟨10.3389/fphys.2022.982920⟩
Journal articles hal-04014003v1
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Sexual Dimorphism in Metabolic Responses to Western Diet in Drosophila melanogaster

Sofie de Groef , Tom Wilms , Severine Balmand , Federica Calevro , Patrick Callaerts
Biomolecules, 2022, 12 (1), pp.33. ⟨10.3390/biom12010033⟩
Journal articles hal-03521337v1
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Aphid BCR4 Structure and Activity Uncover a New Defensin Peptide Superfamily

Karine Loth , Nicolas Parisot , Françoise Paquet , Hugo Terrasson , Catherine Sivignon
International Journal of Molecular Sciences, 2022, 23 (20), pp.12480. ⟨10.3390/ijms232012480⟩
Journal articles hal-03862651v1
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The Di-Symbiotic Systems in the Aphids Sipha maydis and Periphyllus lyropictus Provide a Contrasting Picture of Recent Co-Obligate Nutritional Endosymbiosis in Aphids

François Renoz , Jérôme Ambroise , Bertrand Bearzatto , Samir Fakhour , Nicolas Parisot
Microorganisms, 2022, 10 (7), pp.1360. ⟨10.3390/microorganisms10071360⟩
Journal articles hal-03738802v1

Evolutionary diversification of insulin-related peptides (IRPs) in aphids and spatiotemporal distribution in Acyrthosiphon pisum

C. Huygens , Mélanie Ribeiro Lopes , Karen Gaget , G. Duport , S. Peignier
Insect Biochemistry and Molecular Biology, inPress, 141, pp.103670. ⟨10.1016/j.ibmb.2021.103670⟩
Journal articles hal-03507324v1

Data-driven Gene Regulatory Networks Inference Based on Classification Algorithms

Sergio Peignier , Pauline Schmitt , Federica Calevro
International Journal on Artificial Intelligence Tools, 2021, 30 (04), pp.2150022. ⟨10.1142/S0218213021500226⟩
Journal articles hal-03297056v1
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At the Gate of Mutualism: Identification of Genomic Traits Predisposing to Insect-Bacterial Symbiosis in Pathogenic Strains of the Aphid Symbiont Serratia symbiotica

François Renoz , Vincent Foray , Jérôme Ambroise , Patrice Baa-Puyoulet , Bertrand Bearzatto
Frontiers in Cellular and Infection Microbiology, 2021, 11, pp.660007. ⟨10.3389/fcimb.2021.660007⟩
Journal articles hal-03297041v1
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Sustainable laser-based technology for insect pest control

R. Gaetani , V. Lacotte , Vincent Dufour , A. Clavel , G. Duport
Scientific Reports, 2021, 11 (1), pp.11068. ⟨10.1038/s41598-021-90782-7⟩
Journal articles hal-03239008v1
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Cytotype Affects the Capability of the Whitefly Bemisia tabaci MED Species To Feed and Oviposit on an Unfavorable Host Plant

Sylvain Benhamou , Isabelle Rahioui , Hélène Henri , Hubert Charles , Pedro da Silva
mBio, 2021, 12 (6), pp.1-16. ⟨10.1128/mBio.00730-21⟩
Journal articles hal-03432050v1
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The genome sequence of the grape phylloxera provides insights into the evolution, adaptation, and invasion routes of an iconic pest

Claude Rispe , Fabrice Legeai , Paul Nabity , Rosa Fernández , Arinder Arora
BMC Biology, 2020, 18 (1), pp.90. ⟨10.1186/s12915-020-00820-5⟩
Journal articles hal-02917617v1
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Drosophila-associated bacteria differentially shape the nutritional requirements of their host during juvenile growth

Jessika Consuegra , Théodore Grenier , Patrice Baa-Puyoulet , Isabelle Rahioui , Houssam Akherraz
PLoS Biology, 2020, 18 (3), pp.e3000681. ⟨10.1371/journal.pbio.3000681⟩
Journal articles hal-02919023v1
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Draft Genome Sequences of Two Cultivable Strains of the Bacterial Symbiont Serratia symbiotica

François Renoz , Jérôme Ambroise , Bertrand Bearzatto , Patrice Baa-Puyoulet , Federica Calevro
Microbiology Resource Announcements, 2020, 9 (10), pp.e01579-19. ⟨10.1128/MRA.01579-19⟩
Journal articles hal-02505875v1
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Sawfly genomes reveal evolutionary acquisitions that fostered the mega-radiation of parasitoid and eusocial Hymenoptera

Jan Philip Oeyen , Patrice Baa-Puyoulet , Joshua Benoit , Leo Beukeboom , Erich Bornberg-Bauer
Genome Biology and Evolution, 2020, 12 (7), pp.1099-1118. ⟨10.1093/gbe/evaa106⟩
Journal articles hal-02618254v1
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Evolutionary novelty in the apoptotic pathway of aphids

Mélanie Ribeiro Lopes , Nicolas Parisot , Karen Gaget , Cissy Huygens , Sergio Peignier
Proceedings of the National Academy of Sciences of the United States of America, 2020, 117 (51), pp.32545-32556. ⟨10.1073/pnas.2013847117⟩
Journal articles hal-03052353v1
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Bis(monoacylglycero)phosphate regulates oxysterol binding protein-related protein 11 dependent sterol trafficking

Maud Arnal-Levron , Yinan Chen , Peter Greimel , Federica Calevro , Karen Gaget
Biochimica et Biophysica Acta Molecular and Cell Biology of Lipids, 2019, 1864 (9), pp.1247-1257. ⟨10.1016/j.bbalip.2019.05.011⟩
Journal articles hal-02146150v1
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Acyrthosiphon pisum

Federica Calevro , Denis Tagu , Patrick Callaerts
Trends in Genetics, 2019, 35 (10), pp.781-782. ⟨10.1016/j.tig.2019.07.003⟩
Journal articles hal-02279584v1
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Bacteriocyte Reprogramming to Cope With Nutritional Stress in a Phloem Sap Feeding Hemipteran, the Pea Aphid Acyrthosiphon pisum

Stefano Colella , Nicolas Parisot , Pierre Simonet , Karen Gaget , Gabrielle Duport
Frontiers in Physiology, 2018, 9, pp.1498. ⟨10.3389/fphys.2018.01498⟩
Journal articles hal-01905508v1
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Identification of Plant Virus Receptor Candidates in the Stylets of Their Aphid Vectors

Craig Webster , Elodie Pichon , Manuella van Munster , Baptiste Monsion , Maelle Deshoux
Journal of Virology, 2018, 92 (14), pp.e00432-18. ⟨10.1128/JVI.00432-18⟩
Journal articles hal-01922319v1
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Bacteriocyte cell death in the pea aphid/ Buchnera symbiotic system

Pierre Simonet , Karen Gaget , Severine Balmand , Mélanie Ribeiro Lopes , Nicolas Parisot
Proceedings of the National Academy of Sciences of the United States of America, 2018, 115 (8), pp.E1819 - E1828. ⟨10.1073/pnas.1720237115⟩
Journal articles hal-01768487v1
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ArthropodaCyc: a CycADS powered collection of BioCyc databases to analyse and compare metabolism of arthropods

Patrice Baa-Puyoulet , Nicolas Parisot , Gérard Febvay , Jaime Huerta-Cepas , Augusto F Vellozo
Database - The journal of Biological Databases and Curation, 2016, pp.1-9. ⟨10.1093/database/baw081⟩
Journal articles hal-01352558v1
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Disruption of phenylalanine hydroxylase reduces adult lifespan and fecundity, and impairs embryonic development in parthenogenetic pea aphids

Pierre Simonet , Karen Gaget , Nicolas Parisot , Gabrielle Duport , Marjolaine Rey
Scientific Reports, 2016, 6, pp.1-12. ⟨10.1038/srep34321⟩
Journal articles hal-01388523v1
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Direct flow cytometry measurements reveal a fine-tuning of symbiotic cell dynamics according to the host developmental needs in aphid symbiosis

Pierre Simonet , Gabrielle Duport , Karen Gaget , Michèle Weiss-Gayet , Stefano Colella
Scientific Reports, 2016, 6, pp.19967. ⟨10.1038/srep19967⟩
Journal articles hal-01352561v1

Assessment of a 16S rRNA amplicon Illumina sequencing procedure for studying the microbiome of a symbiont-rich aphid genus

Eric Jousselin , A.L. Clamens , M. Galan , M. M. Bernard , Sarah Maman
Molecular Ecology Resources, 2016, 16 (3), pp.628-640. ⟨10.1111/1755-0998.12478⟩
Journal articles hal-01449134v1
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New insight into the RNA interference response against cathepsin-L gene in the pea aphid, Acyrthosiphon pisum: Molting or gut phenotypes specifically induced by injection or feeding treatments.

Panagiotis Sapountzis , Gabrielle Duport , Severine Balmand , Karen Gaget , Stéphanie Jaubert-Possamai
Insect Biochemistry and Molecular Biology, 2014, 51, to be published. ⟨10.1016/j.ibmb.2014.05.005⟩
Journal articles hal-01002574v1
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Genomic analysis of the regulatory elements and links with intrinsic DNA structural properties in the shrunken genome of Buchnera

Lilia Brinza , Federica Calevro , Hubert Charles
BMC Genomics, 2013, 14 (1), pp.73. ⟨10.1186/1471-2164-14-73⟩
Journal articles hal-00788161v1
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Tyrosine pathway regulation is host-mediated in the pea aphid symbiosis during late embryonic and early larval development

Andréane Rabatel , Gérard Febvay , Karen Gaget , Gabrielle Duport , Patrice Baa-Puyoulet
BMC Genomics, 2013, 14 (1), pp.235. ⟨10.1186/1471-2164-14-235⟩
Journal articles hal-00824527v1
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CycADS: an annotation database system to ease the development and update of BioCyc databases.

Augusto F Vellozo , Amélie S Véron , Patrice Baa-Puyoulet , Jaime Huerta-Cepas , Ludovic Cottret
Database - The journal of Biological Databases and Curation, 2011, 2011, pp.bar008. ⟨10.1093/database/bar008⟩
Journal articles hal-00632965v1
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Multimodal dynamic response of the Buchnera aphidicola pLeu plasmid to variations in leucine demand of its host, the pea aphid Acyrthosiphon pisum.

José Viñuelas , Gérard Febvay , Gabrielle Duport , Stefano Colella , Jean-Michel Fayard
Molecular Microbiology, 2011, 81 (5), pp.1271-1285. ⟨10.1111/j.1365-2958.2011.07760.x⟩
Journal articles hal-00746846v1
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A genomic reappraisal of symbiotic function in the aphid/buchnera symbiosis: reduced transporter sets and variable membrane organisations.

Hubert Charles , Severine Balmand , Araceli Lamelas , Ludovic Cottret , Vicente Pérez-Brocal
PLoS ONE, 2011, 6 (12), pp.e29096. ⟨10.1371/journal.pone.0029096⟩
Journal articles hal-00659506v1
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Genome Sequence of the Pea Aphid Acyrthosiphon pisum

Iagc The International Aphid Genomics Consortium , Federica Calevro , Hubert Charles , Stefano Colella , Gérard Febvay
PLoS Biology, 2010, 8 (2), pp.e1000313. ⟨10.1371/journal.pbio.1000313⟩
Journal articles hal-00459970v1

Genomic insight into the amino acid relations of the pea aphid, Acyrthosiphon pisum, with its symbiotic bacterium Buchnera aphidicola.

A. C. C. Wilson , P. D. Ashton , Federica Calevro , H. Charles , Stefano Colella
Insect Molecular Biology, 2010, 19 Suppl 2 (S2), pp.249-58. ⟨10.1111/j.1365-2583.2009.00942.x⟩
Journal articles hal-00539196v1
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Structure and dynamics of the operon map of Buchnera aphidicola sp. strain APS.

Lilia Brinza , Federica Calevro , Gabrielle Duport , Karen Gaget , Christian Gautier
BMC Genomics, 2010, 11 (666), pp.666. ⟨10.1186/1471-2164-11-666⟩
Journal articles hal-00632959v1

Systemic analysis of the symbiotic function of Buchnera aphidicola, the primary endosymbiont of the pea aphid Acyrthosiphon pisum.

Lilia Brinza , José Viñuelas , Ludovic Cottret , Federica Calevro , Yvan Rahbé
Comptes Rendus Biologies, 2009, 332 (11), pp.1034-49. ⟨10.1016/j.crvi.2009.09.007⟩
Journal articles hal-00445861v1

Un vieux couple inséparable à la conquête des plantes vasculaires : le puceron et Buchnera, sa bactérie symbiotique

Yvan Rahbé , Gérard Febvay , Stefano Colella , Hubert Charles , Federica Calevro
Comptes Rendus de l'Académie d'Agriculture de France, 2009, 95 (5), pp.78-78
Journal articles hal-02657684v1
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Impact of host developmental age on the transcriptome of the symbiotic bacterium Buchnera aphidicola in the pea aphid (Acyrthosiphon pisum).

John Bermingham , Andréane Rabatel , Federica Calevro , José Viñuelas , Gérard Febvay
Applied and Environmental Microbiology, 2009, 75 (22), pp.7294-7. ⟨10.1128/AEM.01472-09⟩
Journal articles hal-00445867v1
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Conservation of the links between gene transcription and chromosomal organization in the highly reduced genome of Buchnera aphidicola.

José Viñuelas , Federica Calevro , Didier Remond , Jacques Bernillon , Yvan Rahbé
BMC Genomics, 2007, 8, pp.143. ⟨10.1186/1471-2164-8-143⟩
Journal articles hal-00373371v1

Unis pour survivre : les pucerons et leurs bactéries symbiotiques

Yvan Rahbé , H. Charles , Federica Calevro , Jean-Christophe Simon , C. Rispe
Biofutur, 2007, 279, pp.49-52
Journal articles hal-00391504v1
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Different levels of transcriptional regulation due to trophic constraints in the reduced genome of Buchnera aphidicola APS

N. Reymond , Federica Calevro , J. Vinuelas , N. Morin , Yvan Rahbé
Applied and Environmental Microbiology, 2006, 72 (12), pp.7760-7766. ⟨10.1128/AEM.01118-06⟩
Journal articles hal-00391509v1
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Codon usage bias and tRNA over-expression in Buchnera aphidicola after aromatic amino acid nutritional stress on its host Acyrthosiphon pisum

H. Charles , Federica Calevro , J. Vinuelas , J.M. Fayard , Yvan Rahbé
Nucleic Acids Research, 2006, 34 (16), pp.4583-4592. ⟨10.1093/nar/gkl597⟩
Journal articles hal-00391277v1

Bioinformatique des puces à ADN et application à l'analyse du transcriptome de Buchnera aphidicola

H. Charles , Federica Calevro , N. Reymond , Yvan Rahbé , G. Febvay
L'Echo des Puys, INRA Clermont-Ferrand, 2005, 79, pp.6
Journal articles hal-00391275v1
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SITRANS: a web information system for microarray experiments

Frederique Laforest , A. Tchounikine , T. Chaari , H. Charles , Federica Calevro
Studies in Health Technology and Informatics, 2005, 116, pp.33-38
Journal articles hal-00391451v1

ROSO : Research on Optimized Oligonucleotide Probes for Microarrays

N. Reymond , H. Charles , L. Duret , Federica Calevro , G. Beslon
Bioinformatics, 2004, 20, pp.271-273
Journal articles hal-00427641v1

Assessment of 35mer amino-modified oligonucleotide based microarray with bacterial samples.

Federica Calevro , Hubert Charles , Nancie Reymond , Vincent Dugas , Jean-Pierre Cloarec
Journal of Microbiological Methods, 2004, 57 (2), pp.207-18. ⟨10.1016/j.mimet.2004.01.009⟩
Journal articles hal-00402180v1

Modélisation du métabolisme et des interactions symbiotiques chez les pucerons

Léo Gerlin , Patrice Baa-Puyoulet , Federica Calevro , Hubert Charles
Journée de l'Enjeu Santé Globale et Bioingénierie de l'INSA, Apr 2023, Villeurbane, France
Conference papers hal-04121080v1

Deciphering growth/nutrition dynamics at the aphid – symbiont interface through metabolic modeling

Leo Gerlin , Patrice Baa-Puyoulet , Karen Gaget , Isabelle Rahioui , Marie-Gabrielle Duport
3e Rencontre du Réseau Français de Biologie Adaptative des Pucerons et Organismes Associés (BAPOA), Nov 2023, Villeurbanne, France
Conference papers hal-04524579v1

Study of host-symbionts coevolution in the whitefly Bemisia tabaci: an experimental evolution approach

Hubert Charles , Hélène Henri , Zainab Belgaidi , Isabelle Rahioui , Karen Gaget
13e Rencontre du Réseau Français de Biologie Adaptative des Pucerons et Organismes Associés (BAPOA), Nov 2023, Villeurbanne, France
Conference papers hal-04524543v1

A genome-wide annotation of transcription factors in the pea aphid, Acyrthosiphon pisum, and the related database, ATFdb

Nicolas Parisot , Mélanie Ribeiro Lopes , Hubert Charles , Sergio Peignier , Patrice Baa-Puyoulet
BAPOA 2023 - 13e Rencontre du Réseau Français de Biologie Adaptative des Pucerons et Organismes Associés, Nov 2023, Villeurbanne, France
Conference papers hal-04524595v1

Peptides « Bacteriocyte-specific Cysteine Rich » (BCR) : un rôle dans le contrôle de la symbiose ? Focus sur BCR4 chez le puceron du pois

Hugo Terrasson , Karine Loth , Nicolas Parisot , Isabelle Rahioui , Karen Gaget
12. Rencontre du Réseau Français de Biologie Adaptative des Pucerons et Organismes Associés (BAPOA), May 2022, Nice, France
Conference papers hal-03741305v1

Sustainable laser-based technology for insect pest control

R. Gaetani , V. Lacotte , Vincent Dufour , Clavel A. , - Duport, G.
ICESB 2021, Jan 2022, Osaka (visio), Japan
Conference papers hal-03543644v1

Plasticity of bacteriocytes facing nutritional stresses in the pea aphid development.

Mélanie Ribeiro Lopes , Karen Gaget , François Renoz , Marie-Gabrielle Duport , Severine Balmand
12. Rencontre du Réseau Français de Biologie Adaptative des Pucerons et Organismes Associés (BAPOA), May 2022, Nice, France
Conference papers hal-03741301v1

Intégration de données multi-omiques pour l’identification d’enzymes clés du métabolisme lipidique chez l’espèce sentinelle Gammarus fossarum

Natacha Koenig , Patrice Baa-Puyoulet , Maxime Leprêtre , Jean-Charles Gaillard , J. Armengaud
GDR Ecotoxicologie, Nov 2021, Rennes, France
Conference papers hal-03810311v1

Analysis of the inhibitor of aPoptosis (IAP) repertoire in insects reveals a complex pattern of gene losses and amplifications

Mélanie Ribeiro Lopes , Jousselin Emmanuelle , Patrice Baa-Puyoulet , C. Huygens , Karen Gaget
Incontri di diversità delle forme e degli animali, Università di Pisa, 2021, Pisa, Italy
Conference papers hal-03514196v1
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Gene Regulatory Network Inference Using Ensembles of Predictors

Sergio Peignier , Baptiste Sorin , Federica Calevro
33rd IEEE International Conference on Tools with Artificial Intelligence, IEEE, Nov 2021, Virtual event, United States
Conference papers hal-03022606v2

Analysis of the Inhibitor of aPoptosis (IAP) repertoire in insects reveals a complex pattern of gene losses and amplifications

Mélanie Ribeiro Lopes , Nicolas Parisot , Sergio Peignier , Karen Gaget , Marie-Gabrielle Duport
Webinaires BAPOA 2021, 2021, Villeurbanne (virtual), France
Conference papers hal-03514209v1

Role of symbionts in insects' ecological diversification: cytotype influences exploitation of an unfavorable host plant in the sap-feeder Bemisia tabaci (Hemiptera: Aleyrodidae).

Sylvain Benhamou , Isabelle Rahioui , Hélène Henri , Hubert Charles , Pedro da Silva
DECRYPthèse E2M2, May 2021, Villeurbanne, France
Conference papers hal-03927225v1

Ensemble Learning Based Gene Regulatory Network Inference

Sergio Peignier , Baptiste Sorin , Federica Calevro
2021 IEEE 33rd International Conference on Tools with Artificial Intelligence (ICTAI), Nov 2021, Washington, France. pp.113-120, ⟨10.1109/ICTAI52525.2021.00024⟩
Conference papers hal-03630485v1

Role of symbionts in insects’ ecological diversification: cytotype influences exploitation of an unfavorable host plant in the sap-feeder Bemisia tabaci

Sylvain Benhamou , Isabelle Rahioui , Hélène Henri , Hubert Charles , Pedro da Silva
DECRYPthèse E2M2 Edition 20, May 2021, Villeurbanne, France
Conference papers hal-03514227v1

Role of symbionts in insects’ ecological diversification: cytotype influences exploitation of an unfavorable host plant in the whitefly Bemisia tabaci (Hemiptera: Aleyrodidae)

Sylvain Benhamou , Isabelle Rahioui , Hélène Henri , Hubert Charles , Pedro da Silva
G-RREMI 2021 - Groupe Régional de Recherche en Microbiologie des Interactions, 2021, Villeurbanne (virtual), France
Conference papers hal-03514239v1
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Data-driven Gene Regulatory Network Inference based on Classification Algorithms

Sergio Peignier , Pauline Schmitt , Federica Calevro
31st IEEE International Conference on Tools with Artificial Intelligence, Nov 2019, Portland, Oregon, United States. ⟨10.1109/ICTAI.2019.00149⟩
Conference papers hal-02361914v1

IAP (Inhibitor-of-Apoptosis Protein) gene family expansion and functional diversification in aphids

Mélanie Ribeiro Lopes , Nicolas Parisot , Karen Gaget , Marie-Gabrielle Duport , Abdelaziz Heddi
UK-France joint Meeting Aphid Special Interest Group – BAPOA, Apr 2019, Rothamsted, United Kingdom
Conference papers hal-03512999v1

Amplification des gènes codant les protéines de la famille des IAP et leur rôle dans l'homéostasie bactériocytaire

Mélanie Ribeiro Lopes , Nicolas Parisot , Karen Gaget , Marie-Gabrielle Duport , Korneel Hens
11. Réunion du Réseau Français de Biologie Adaptative des Pucerons et Organismes Associés (BAPOA), Nov 2018, Rennes, France
Conference papers hal-03741308v1

Bacteriocyte reprogramming to cope with nutritional stress in a phloem sap feeding hemipteran, the pea aphid Acyrthosiphon pisum

Nicolas Parisot , Mélanie Ribeiro Lopes , Karen Gaget , Marie-Gabrielle Duport , Patrice Baa-Puyoulet
France-Israel PRC Meeting – The role of metabolic interactions in shaping the bacterial endosymbiotic community of Hemyptera, Nov 2018, Villeurbanne, France
Conference papers hal-03514051v1

Another way to die for bacteriocytes in the aphid/Buchnera symbiotic system

Mélanie Ribeiro Lopes , Pierre Simonet , Karen Gaget , Severine Balmand , Kurt Buhler
Journée des doctorants du département SPE, Jun 2018, Nice, France
Conference papers hal-03510629v1

A novel cell death process is involved in the elimination of bacteriocytes and their symbionts through aphid aging

Mélanie Ribeiro Lopes , Pierre Simonet , Karen Gaget , Severine Balmand , Nicolas Parisot
France-Israel PRC Meeting – The role of metabolic interactions in shaping the bacterial endosymbiotic community of Hemyptera, Nov 2018, Villeurbanne, France
Conference papers hal-03514078v1

Bacteriocyte reprogramming to cope with nutritional stress in a phloem sap feeding hemipteran, the pea aphid Acyrthosiphon pisum

Nicolas Parisot , Stefano Colella , Mélanie Ribeiro Lopes , Karen Gaget , Marie-Gabrielle Duport
International Partner Days, Oct 2018, Villeurbanne (INSA-Lyon), France
Conference papers hal-03514034v1

Expansion of genes encoding Apoptosis Inhibitor Proteins (IAPs) and their role in a novel bacteriocyte cell death process in aphid symbiosis

Mélanie Ribeiro Lopes , Nicolas Parisot , Karen Gaget , Pierre Simonet , Severine Balmand
22. Evolutionary Biology Meeting, Sep 2018, Marseille, France
Conference papers hal-03509938v1

AphidCyc, une collection de bases de données métaboliques dédiée à l'étude et la comparaison du métabolisme chez les pucerons

Patrice Baa-Puyoulet , Hubert Charles , Federica Calevro
11ème Réunion du Réseau Français de Biologie Adaptative des Pucerons et Organismes Associés (BAPOA), Nov 2018, Rennes, France
Conference papers hal-03510642v1

Rôle clé du bactériocyte dans la résilience du puceron aux stress nutritionnels

Federica Calevro , Nicolas Parisot , Mélanie Ribeiro Lopes , Stefano Colella , Karen Gaget
11ème Réunion du Réseau Français de Biologie Adaptative des Pucerons et Organismes Associés (BAPOA), Nov 2018, Rennes, France
Conference papers hal-03514026v1

Effecteurs et inhibiteurs de l’apoptose chez le puceron du pois : annotation et implication dans la mort cellulaire bactériocytaire

Mélanie Ribeiro Lopes , Pierre Simonet , Karen Gaget , Marie-Gabrielle Duport , Severine Balmand
10. Réunion du Réseau Français de Biologie Adaptative des Pucerons et Organismes Associés (BAPOA), Nov 2017, Colmar, France
Conference papers hal-03506807v1

Systems biology of symbiosis: from partners’ genomics to physiology of interactions

Hubert Charles , Federica Calevro , Gérard Febvay , Patrice Baa-Puyoulet , Marie-Gabrielle Duport
First Meeting of the PRC Israel-France, Sep 2016, Villeurbanne, France
Conference papers hal-03506791v1

The long-term relationship with Buchnera aphidicola imposes another way to die for Acyrthosiphon pisum bacteriocytes

Pierre Simonet , Severine Balmand , Karen Gaget , Karine Buhler , Nicolas Parisot
9. Réunion annuelle du Réseau BAPOA (Biologie Adaptative des Pucerons et Organismes Associés), Nov 2016, Amiens, France
Conference papers hal-03506794v1

Une nouvelle forme de mort cellulaire impliquée dans la dégénérescence des cellules bactériocytaires chez le puceron du pois, Acyrthosiphon pisum

Pierre Simonet , Severine Balmand , Karen Gaget , Marie-Gabrielle Duport , Nicolas Parisot
18. Colloque Biologie de l'Insecte, Jun 2016, Tours, France
Conference papers hal-03506790v1

Life history traits and tissue-specific gene expression changes underlying the symbiotic pea aphid resilience to a tyrosine and phenylalanine depleted diet

Nicolas Parisot , Pierre Simonet , Karen Gaget , Marie-Gabrielle Duport , Patrice Baa-Puyoulet
9. Réunion du Réseau Français de Biologie Adaptative des Pucerons et Organismes Associés (BAPOA), Nov 2016, Amiens, France
Conference papers hal-03506796v1
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From SymbAphidBase to SymbAphidCyc: two companion databases to study and compare aphid symbionts from genomes to metabolic pathways

Patrice Baa-Puyoulet , Mathieu Labernardiere , Nicolas Parisot , Jean-Pierre Gauthier , Gérard Febvay
JOBIM 2015 - Journées Ouvertes Biologie Informatique Mathématiques, Université d'Auvergne - Clermont-Ferrand I (UdA). FRA., Jul 2015, Clermont-Ferrand, France. 1 p
Conference papers hal-01208786v1

Coordination des dynamiques cellulaires entre bactériocytes et endosymbiotes au cours du développement des insectes : Une nouvelle approche par cytométrie en flux.

Pierre Simonet , Marie-Gabrielle Duport , Karen Gaget , Michèle Weiss-Gayet , Stefano Colella
Réunion annuelle du REID (Réseau National Ecologie des Interactions Durables), Réseau Ecologie des Interactions Durables (REID). Montferrier/ Lez, FRA., Mar 2015, Villeurbanne, France
Conference papers hal-02801005v1

Direct flow cytometry measurements and cell imaging reveal a fine-tuning of endosymbiont and bacteriocyte cell dynamics during aphid development

Pierre Simonet , Marie-Gabrielle Duport , Karen Gaget , Severine Balmand , Stefano Colella
UK – France joint meeting on Aphids (Réseau Français de Biologie Adaptative des Pucerons et Organismes Associés – Aphids Special Interest Group of Royal Entomological Sociaty), Nov 2015, Paris, France
Conference papers hal-03506775v1

Specific body compartment phenotypes induced by dsRNA treatments in the pea aphid: the cathepsin-L and phenylalanine hydroxylase examples

Pierre Simonet , Karen Gaget , Marie-Gabrielle Duport , Federica Calevro
7. Rencontres du réseau Biologie Adaptative des Pucerons et Organismes Associés (BAPOA), Réseau Biologie Adaptative des Pucerons et des Organismes Associés (BAPOA). Le Rheu, FRA., Nov 2014, Avignon, France
Conference papers hal-02795336v1

SymbAphidBase : une base de données nouvelle dédiée aux symbiotes de pucerons pour stocker et visualiser les génomes séquencés en standardisant leurs annotations

Mathieu Labernardiere , Patrice Baa-Puyoulet , Jean-Pierre Gauthier , Gérard Febvay , Federica Calevro
7. Rencontres du réseau Biologie Adaptative des Pucerons et Organismes Associés (BAPOA), Réseau Biologie Adaptative des Pucerons et des Organismes Associés (BAPOA). Le Rheu, FRA., Nov 2014, Avignon, France. 1 p
Conference papers hal-01208785v1

Dynamique de la cellule bactériocytaire et des populations symbiotiques au cours du développement du puceron du pois

Pierre Simonet , Marie-Gabrielle Duport , Karen Gaget , M. Weiss-Gayet , Stefano Colella
7èmes journées du Réseau BAPOA (Biologie Adaptative des Pucerons et Organismes Associés), 2014, Avignon, France
Conference papers hal-03513906v1

Dynamique de la cellule bactériocytaire et des populations symbiotiques au cours du développement du puceron du pois

Pierre Simonet , Marie-Gabrielle Duport , Karen Gaget , Michèle Weiss-Gayet , Stefano Colella
7. Rencontres du réseau Biologie Adaptative des Pucerons et Organismes Associés (BAPOA), Réseau Biologie Adaptative des Pucerons et des Organismes Associés (BAPOA). Le Rheu, FRA., Nov 2014, Avignon, France
Conference papers hal-02795335v1

Analyse métabolomique de la symbiose entre le puceron Acyrthosiphon pisum et la bactérie Buchnera aphidicola

Marjolaine Rey , Floriant Bellvert , Marie-Gabrielle Duport , Patrice Baa-Puyoulet , Federica Calevro
7èmes Journées Scientifiques du Réseau Français de Métabolomique et Fluxomique, Jun 2013, Amiens, France
Conference papers hal-03506751v1

dsRNAi in aphids induces variable individual and tissue responses, and phenotypes specific to the administration methods

Panagiotis Sapountzis , Karen Gaget , Marie-Gabrielle Duport , G. Febvay , Hubert Charles
Cycle de séminaires en Biophysique et Biologie Moléculaire de la Cellule et du Développement, Dipartimento di Fisiologia e Biochimica, Università di Pisa / Scuola Normale Superiore di Pisa, Oct 2013, Pisa, Italy
Conference papers hal-03506764v1

Organisation, gene expression regulation and DNA structural properties in the shrunken genome of Buchnera, the endosymbiont of aphids

Hubert Charles , Federica Calevro , Stefano Colella , Gérard Febvay
1. International Research Workshop Lyon- France / São Paulo - Brazil, Nov 2013, Lyon, France
Conference papers hal-03506769v1

L'inactivation par RNAi du gène codant la phénylalanine hydrolase dans les compartiments symbiotiques provoque une baisse de la fécondité et des défauts de développement chez le puceron du pois, Acyrthosiphon pisum

Karen Gaget , Marie-Gabrielle Duport , Marjolaine Rey , Severine Balmand , Hubert Charles
Réunion du GRREMI (Groupe Régional de Recherche en Microbiologie des Interactions), Oct 2013, Lyon, France
Conference papers hal-03506724v1

Symbiose puceron – Buchnera : approche métabolomique chez Acyrthosiphon pisum

Marjolaine Rey , Floriant Bellvert , Marie-Gabrielle Duport , Patrice Baa-Puyoulet , Federica Calevro
6èmes journées du Réseau BAPOA (Biologie Adaptative des Pucerons et Organismes Associés, Oct 2013, Montpellier, France
Conference papers hal-03506758v1

Analyse génomique des éléments régulateurs et des propriétés structurales intrinsèques de l'ADN dans le génome réduit de Buchnera

Lilia Brinza , Federica Calevro , Hubert Charles
5. Réunion Réseau BAPOA, Réseau Biologie Adaptative des Pucerons et des Organismes Associés (BAPOA). FRA., Nov 2012, Villeurbanne, France. 22 diapos
Conference papers hal-02808160v1

Phénotypes induits par l'inactivation fonctionnelle par RNAi du gène ACYPY007803 (phényalanine hydroxylase) chez le puceron du pois

Andréane Rabatel , Marie-Gabrielle Duport , Karen Gaget , Hubert Charles , Gérard Febvay
5. Journées du Réseau BAPOA (Biologie Adaptative des Pucerons et Organismes Associés), Nov 2012, Lyon, France
Conference papers hal-03506379v1

Key genes for symbiosis and development in an emerging genomic model, the pea aphid

Federica Calevro , Stefano Colella , Gérard Febvay , Hubert Charles
Séminaire invité au Dipartimento di Fisiologia e Biochimica, Università di Pisa / Scuola Normale Superiore di Pisa, Universita degli studi di Pisa. Dipartimento di Fisiologia e Biochimica, Pisa, ITA., 2012, Pisa, Italy
Conference papers hal-02804850v1

Aphicibles - Symbiosis, digestion and reproduction as aphid physiological processes to identify new targets for insecticides

Yvan Rahbé , Denis Tagu , Guy Condemine , E Guiderdoni , Federica Calevro
ANR - Colloque Plant Genomics 2012, Apr 2012, Pont Royal en Provence, France
Conference papers hal-03506701v1

Integration of metabolic pathways and host regulation in symbiosis: tyrosine and cuticular protein biosynthesis during the pea aphid embryonic development

Andréane Rabatel , Gérard Febvay , Karen Gaget , Gabrielle Duport , Nadia Bendridi
Sixth International Symposium on Molecular Insect Science, 2011, Amsterdam, Netherlands
Conference papers hal-00748785v1

Transcriptome analysis of embryo development in a parthenogenetic and symbiotic insect model, the pea aphid

Andréane Rabatel , Gérard Febvay , Karen Gaget , Marie-Gabrielle Duport , Yvan Rahbé
IPG'10 Integrative Post-Genomics, Centre Jacques Cartier. Lyon, FRA., Nov 2011, Lyon, France
Conference papers hal-02814211v1

Réévaluation génomique de la fonction de transport chez Buchnera, endocytobiote des pucerons : une faible diversité de transporteurs et une organisation membranaire variable

Hubert Charles , Severine Balmand , Araceli Lamelas , Ludovic Cottret , Vicente Pérez-Brocal
4. Réunion Réseau Français de Biologie Adaptative des Pucerons et Organismes Associés, Réseau Biologie Adaptative des Pucerons et des Organismes Associés (BAPOA). FRA., Nov 2011, Paris, France
Conference papers hal-02808863v1

Genomic analysis of the transport function in the symbiotic system of the pea aphid Acyrthosiphon pisum

Yvan Rahbé , Nicolas Parisot , Karen Gaget , Stefano Colella , Andréane Rabatel
5. Meeting GDRE-RA "Comparative genomics", Institut d'Estudis Catalans (IEC). Barcelona, ESP., Nov 2010, Barcelone, Spain. n. p
Conference papers hal-02823073v1

Exploration génomique et fonctionnelle des insectes et de leurs partenaires symbiotiques

Hubert Charles , Stefano Colella , Federica Calevro , Gérard Febvay , Yvan Rahbé
Journée Sciences Croisées "Modélisation et Sciences Numériques : nouveaux instruments et opportunités", Institut National des Sciences Appliquées de Lyon (INSA Lyon). Conseil Scientifique de l'INSA, Villeurbanne, FRA., Oct 2010, Villeurbanne, France. n. p
Conference papers hal-02804281v1

Chromosome organization and gene expression regulation in Buchnera aphidicola, the obligate intracellular bacteria of the pea aphid Acyrthosiphon pisum

Hubert Charles , Lilia Brinza , Federica Calevro
58. Annual Meeting of the Entomological Society of America, Entomological Society of America (ESA). Annapolis, MD, USA., Dec 2010, San Diego, CA, United States
Conference papers hal-02757719v1
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Characterization of partenogenetic embryo development in the context of symbiosis using transcriptome analysis in the pea aphid model

Andréane Rabatel , Gérard Febvay , Karen Gaget , Marie-Gabrielle Duport , Yvan Rahbé
EMBO Workshop on Systems Biology of Development, EMBO. Heidelberg, DEU., Aug 2010, Ascona, Switzerland. 1 p
Conference papers hal-01231279v1

Annotation et évolution des familles de transporteurs chez le puceron du pois (Acyrthosiphon pisum)

Nicolas Parisot , Karen Gaget , Stefano Colella , Andréane Rabatel , Federica Calevro
3. Réunion Réseau Français de Biologie Adaptative des Pucerons, Institut National de Recherche Agronomique (INRA). UMR Biologie Fonctionnelle, Insectes et Interactions (0203)., Oct 2010, Lyon, France. n. p
Conference papers hal-02818835v1

Individual and compartment specific response to RNAi in aphids: each individual matters

Panagiotis Sapountzis , Marie-Gabrielle Duport , Karen Gaget , Severine Balmand , Gérard Febvay
3. Réunion Réseau Français de Biologie Adaptative des Pucerons, Institut National de Recherche Agronomique (INRA). UMR Biologie Fonctionnelle, Insectes et Interactions (0203)., Oct 2010, Lyon, France
Conference papers hal-02821530v1

Aphicibles : Symbiosis, digestion and reproduction as aphid physiological processes to identify new targets for insecticides

Yvan Rahbé , Denis Tagu , Guy Condemine , Emmanuel Guiderdoni , Federica Calevro
Genoplante 2010, Agence Nationale de la Recherche (ANR). Paris, FRA., Mar 2010, Avignon, France. 40 diapos
Conference papers hal-02824684v1

Caractérisation transcriptomique du développement embryonnaire et larvaire du puceron du pois Acyrthosiphon pisum

Andréane Rabatel , Gérard Febvay , Karen Gaget , Marie-Gabrielle Duport , Yvan Rahbé
16. Colloque de Biologie de l’Insecte, Oct 2010, Lyon, France. 126 p
Conference papers hal-02755293v1

Fate of transcription units in the reductive evolution of the genome of Buchnera aphidicola

Lilia Brinza , Federica Calevro , Hubert Charles
6th International Symbiosis Society Congress (6 ISS 2009) Madison, Wisconsin USA, August 9-15 2009, Aug 2009, United States
Conference papers hal-00497818v1

Un vieux couple à la conquête des plantes vasculaires : le puceron et sa bactérie symbiotique

Federica Calevro , Stefano Colella , Gérard Febvay , Hubert Charles , Yvan Rahbé
Séance commune Académie Agriculture et Académie des Sciences, Académie d'Agriculture de France (AAF). Paris, FRA., Dec 2009, Paris, France. 23 diapos
Conference papers hal-02824438v1

AcypiCyc (Acyrthosiphon pisumCyc database) and CycADS (CycAnnotation Database System) : moving from genome sequence annotation to metabolic network analyses

Stefano Colella , Augusto Vellozo , Ludovic Cottret , Gérard Febvay , Federica Calevro
8. International Symposium on Aphids (8 ISA 2009), 2009, Catania, juin 2009, Italy
Conference papers hal-02814863v1

Xylem consumption response to osmotic stress in aphids

J. Pompon , Yvan Rahbé , Federica Calevro , D. Quiring , C. Goyer
Annual meeting, Entomological Society of Canada, Winnipeg - Canada, 2009, Canada
Conference papers hal-00496044v1

The Acyrthosiphon pisum Cyc database (AcypiCyc) created using a novel BioCyc Annotation Database System (CycADS): a useful tool to explore and study the pea aphid metabolism

Stefano Colella , A. Vellozo , Ludovic Cottret , Gérard Febvay , Federica Calevro
5th Meeting of the International Aphid Genomics Consortium "Pea Aphid Genome Annotation Workshop 2, Barcelona, Espagne, juin 2009, Jun 2009, France
Conference papers hal-00498411v1

Genomic insight into the amino acid relations of the pea aphid with its symbiotic bacterium Buchnera aphidicola

A.C.C. Wilson , P. Ashton , Federica Calevro , Hubert Charles , Stefano Colella
8th International Symposium on Aphids (8 ISA 2009), Catania, juin 2009, Italy, 2009, Italy
Conference papers hal-00497625v1

AcypiCyc (Acyrthosiphon pisumCyc database) and CycADS (CycAnnotation Database System) : moving from genome sequence annotation to metabolic network analyses

Stefano Colella , Augusto Vellozo , Ludovic Cottret , Gérard Febvay , Federica Calevro
Réseau Français de Biologie Adaptative des Pucerons, 2009, Paris, juin 2009, France
Conference papers hal-02815123v1

The power of combining genome annotation and systems level modeling.

S.J. Macdonald , J. Ramsey , G. Jander , Atsushi Nakabachi , G.H. Thomas
5th Meeting of the International Aphid Genomics Consortium "Pea Aphid Genome Annotation Workshop 2", Barcelona, Espagne, Juin 2009, Jun 2009, Spain
Conference papers hal-00498405v1

Besoins en acides aminés des embryons de femelles parthénogénétiques du puceron du pois.

Andréane Rabatel , Nadia Bendridi , Gabrielle Duport , Marjolaine Rey , Stefano Colella
Réseau Français de Biologie Adaptative des Pucerons, Jun 2009, PARIS, France
Conference papers hal-00511624v1

AcypiCyc (Acyrthosiphon pisum Cyc database) : a model database to visualize and study the metabolic network underlying the pea aphid-Buchnera symbiosis

Stefano Colella , Augusto Vellozo , Ludovic Cottret , Gérard Febvay , Federica Calevro
6. International Symbiosis Society (ISS) Congress, 2009, Madison, août 2009, United States
Conference papers hal-02814342v1

Metabolic requirements in essential amino acids in parthenogenetic pea aphid embryos

Andréane Rabatel , Nadia Bendridi , - Duport, G. , Marjolaine Rey , Stefano Colella
8. International Symposium on Aphids (8 ISA 2009), 2009, Catania, juin 2009, Italy
Conference papers hal-02820893v1

Metabolic requirements in essential amino acids in parthenogenetic pea aphid embryos

A. Rabatel , N. Bendridi , G. Duport , Stefano Colella , J. Bermingham
8th International Symposium on Aphids (8 ISA 2009), 2009, Catania (Italie), juin 2009, France. pp.1-1
Conference papers hal-00391499v1

CycADS: an annotation management system for the development and update of BioCyc metabolic network databases

A. Vellozo , Patrice Baa-Puyoulet , A. Veron , Jaime Huerta-Cepas , Ludovic Cottret
1st International Workshop on Information Systems for Insect Pests, Rennes, FRANCE, 2009, France
Conference papers hal-00496032v1

AcypiCyc (Acyrthosiphon pisum Cyc database) and CycADS (Cyc Annotation Database System): moving from genome sequence annotation to metabolic network analyses

Stefano Colella , A. Vellozo , L. Cottret , G. Febvay , Federica Calevro
8th International Symposium on Aphids (8 ISA 2009), 2009, Catania (Italie), juin 2009, France. pp.1-1
Conference papers hal-00391280v1

Interactions trophiques dans la symbiose puceron - Buchnera : Régulations transcriptionnelles de la réponse à la carence en acides aminés essentiels

Federica Calevro , H. Charles , J.M. Fayard , G. Febvay , Yvan Rahbé
Réseau Français de Biologie Adaptative des Pucerons, 2008, Paris (France), janvier 2008, France. pp.1-1
Conference papers hal-00391259v1

Evolution des organismes bactériens

G. Beslon , Federica Calevro , H. Charles , J.M. Fayard , C. Knibbe
Journée INSA de Lyon "BioIngénierie / Sciences et Ingénierie du Vivant", 2008, Villeurbanne (France), juillet 2008, France. pp.1-1
Conference papers hal-00391156v1

Caractérisation et modélisation de la « fonction symbiotique » de Buchnera aphidicola chez le puceron du pois Acyrthosiphon pisum

H. Charles , Federica Calevro , Stefano Colella , J.M. Fayard , G. Febvay
Séminaire INRA AgroBI, 2008, Bordeaux (France), décembre 2008, France. pp.1-1
Conference papers hal-00391273v1

Transcriptomique

Jean-François Boulicaut , Federica Calevro , H. Charles , J.M. Fayard , G. Febvay
Journée INSA de Lyon "BioIngénierie / Sciences et Ingénierie du Vivant", 2008, Villeurbanne (France), juillet 2008, France. pp.1-1
Conference papers hal-00391255v1

Interactions trophiques dans la symbiose puceron - Buchnera : Régulations transcriptionnelles de la réponse à la carence en acides aminés essentiels

Federica Calevro
1. Réunion Réseau Français de Biologie Adaptative des Pucerons, Réunion du Réseau Français de Biologie Adaptative des Pucerons. FRA., Jan 2008, Paris, France. 9 diapos
Conference papers hal-02820252v1

Les réseaux métaboliques et génétiques

H. Charles , G. Beslon , Federica Calevro , Jean-François Boulicaut , J.M. Fayard
Journée INSA de Lyon "BioIngénierie / Sciences et Ingénierie du Vivant", 2008, Villeurbanne (France), juillet 2008, France. pp.1-1
Conference papers hal-00391271v1

Development of the Acyrthosiphon pisum Cyc database (ApsCyc) : from genome sequence to metabolic network analyses

Augusto Vellozo , Stefano Colella , Ludovic Cottret , Gérard Febvay , Federica Calevro
Integrative Post-Genomics - IPG'08, 2008, Lyon, novembre 2008, France
Conference papers hal-02821711v1

Caractérisation et modélisation de la « fonction symbiotique » de Buchnera aphidicola chez le puceron du pois Acyrthosiphon pisum

Hubert Charles , Federica Calevro , Stefano Colella , Jean-Michel Fayard , Gérard Febvay
Séminaire INRA AgroBI, 2008, Bordeaux, décembre 2008, France
Conference papers hal-02824972v1

Evolution des organismes bactériens

Guillaume Beslon , Federica Calevro , Hubert Charles , Jean-Michel Fayard , Carole Knibbe
Journée INSA de Lyon "BioIngénierie / Sciences et Ingénierie du Vivant", Jul 2008, Villeurbanne, France. 12 diapos
Conference papers hal-02822501v1

Annotation of metabolism genes: towads the implementation of an Acyrthosiphon pisum Cyc database (ApsCyc) to perform metabolic network analyses

Stefano Colella , A. Vellozo , L. Cottret , G. Febvay , Federica Calevro
4th Meeting of the International Aphid Genomics Consortium "Pea Aphid Genome Annotation Workshop 1", 2008, Princetown (USA), juillet 2008, France. pp.1-1
Conference papers hal-00391279v1

Development of the Acyrthosiphon pisum Cyc database (ApsCyc): from genome sequence to metabolic network analyses

A. Vellozo , Stefano Colella , L. Cottret , G. Febvay , Federica Calevro
Integrative Post-Genomics - IPG'08, 2008, Lyon (France), novembre 2008, France. pp.1-1
Conference papers hal-00391519v1

Regulation of expression following nutritional stresses in the reduced genome of Buchnera aphidicola, "Is there any life left?"

Yvan Rahbé , H. Charles , J. Vinuelas , N. Reymond , Federica Calevro
Seminarios del Institut Cavanilles de Biodiversitat i Biologia Evolutiva (ICBiBE) - Univ. Valencia (ESP), 2007, Valencia (Espagne), juin 2007, France. pp.1-1
Conference papers hal-00391505v1

Conservation de la relation entre niveau d'expression des gènes et organisation du chromosome chez Buchnera aphidicola, symbiote primaire des pucerons : exemple d'un génome réduit mais non dégénéré

J. Vinuelas , Federica Calevro , D. Remond , J. Bernillon , Yvan Rahbé
XVème Colloque de Physiologie de l'Insecte, Jul 2007, Rennes, France. pp.1-1
Conference papers hal-00373311v1

IGOIM, une méthode d'inférence de réseaux génétiques utilisant l'information mutuelle

L. Brinza ,