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FJ

Fred Jean

Fred JEAN - Univ. of Brest, France.
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Presentation

Professeur en écologie marine. Écologie et biophysique des systèmes marins, bioénergétique et écophysiologie des invertébrés benthiques, principalement des mollusques.
Professor in marine ecology Biophysical ecology of marine systems, bioenergetics and ecophysiology of benthic invertebrates, mainly molluscs so far.

Research domains


Skills

Expérimentations en écophysiologie

Publications

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Reproduction patterns of the bloody cockle Senilia senilis (Linnaeus 1758) in the Sine-Saloum inverse estuary

Babacar Sané , Malick Diouf , Frédéric Jean , Jonathan Flye-Sainte-Marie , Malika Kerhervé
Aquatic Living Resources, 2023, 36, pp.33. ⟨10.1051/alr/2023029⟩
Journal articles hal-04372964v1
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Physiological and comparative proteomic analyzes reveal immune defense response of the king scallop Pecten maximus in presence of paralytic shellfish toxin (PST) from Alexandrium minutum

Yasmine Even , Emilien Pousse , Coraline Chapperon , Sébastien Artigaud , Hélène Hégaret
Harmful Algae, 2022, 115, pp.102231. ⟨10.1016/j.hal.2022.102231⟩
Journal articles hal-03723474v1
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Size‐based survival of cultured Argopecten purpuratus (L, 1819) under severe hypoxia

Rosa Cueto‐vega , Jonathan Flye-Sainte-Marie , Arturo Aguirre‐velarde , Fred Jean , Patricia Gil‐kodaka
Journal of the World Aquaculture Society, 2022, 53 (1), pp.151-173. ⟨10.1111/jwas.12777⟩
Journal articles insu-03457249v1
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High-Resolution Drone Images Show That the Distribution of Mussels Depends on Microhabitat Features of Intertidal Rocky Shores

Romina Vanessa Barbosa , Marion Jaud , Cédric Bacher , Yann Kerjean , Fred Jean
Remote Sensing, 2022, 14 (21), pp.5441. ⟨10.3390/rs14215441⟩
Journal articles hal-03836423v1
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Revealing perturbation responses with limited observations of biological communities

Nikolaos Alexandridis , Cédric Bacher , Fred Jean , Jeffrey Dambacher
Ecological Indicators, 2021, 128, pp.107840. ⟨10.1016/j.ecolind.2021.107840⟩
Journal articles hal-03323984v1
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Linking individual and population patterns of rocky-shore mussels

Romina Vanessa Barbosa , Fred Jean , Cédric Bacher , Yoann Thomas
PeerJ, 2021, 9, pp.e12550. ⟨10.7717/peerj.12550⟩
Journal articles hal-03836433v1
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Chronic and severe hypoxic conditions in Paracas Bay, Pisco, Peru: Consequences on scallop growth, reproduction, and survival

Arturo Aguirre-Velarde , Gérard Thouzeau , Fred Jean , Jaime Mendo , Rosa Cueto-Vega
Aquaculture, 2019, 512, pp.734259. ⟨10.1016/j.aquaculture.2019.734259⟩
Journal articles hal-02405983v1
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What can the shell tell about the scallop? Using growth trajectories along latitudinal and bathymetric gradients to reconstruct physiological history with DEB theory

Romain Lavaud , Aurelie Jolivet , Eric Rannou , Fred Jean , Oivind Strand
Journal of Sea Research (JSR), 2019, 143, pp.193-206. ⟨10.1016/j.seares.2018.04.001⟩
Journal articles hal-02871386v1
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Modelling paralytic shellfish toxins (PST) accumulation in Crassostrea gigas by using Dynamic Energy Budgets (DEB)

Emilien Pousse , Jonathan Flye-Sainte-Marie , Marianne Alunno-Bruscia , Helene Hegaret , Eric Rannou
Journal of Sea Research (JSR), 2019, 143, pp.152-164. ⟨10.1016/j.seares.2018.09.002⟩
Journal articles hal-02114653v1
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Reconstructing physiological history from growth, a method to invert DEB models

Romain Lavaud , Eric Rannou , Jonathan Flye-Sainte-Marie , Fred Jean
Journal of Sea Research (JSR), 2019, 143, pp.183-192. ⟨10.1016/j.seares.2018.07.007⟩
Journal articles hal-02114581v1
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Predicting the energy budget of the scallop Argopecten purpuratus in an oxygen–limiting environment

Arturo Aguirre-Velarde , Laure Pecquerie , Fred Jean , Gérard Thouzeau , Jonathan Flye-Sainte-Marie
Journal of Sea Research (JSR), 2019, 143, pp.254-261. ⟨10.1016/j.seares.2018.09.011⟩
Journal articles hal-02114544v1
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Individual-based simulation of the spatial and temporal dynamics of macroinvertebrate functional groups provides insights into benthic community assembly mechanisms

Nikolaos Alexandridis , Cédric Bacher , Nicolas Desroy , Fred Jean
PeerJ, 2018, 6, pp.e5038. ⟨10.7717/peerj.5038⟩
Journal articles hal-02614270v1

Feeding behaviour and growth of the Peruvian scallop ( Argopecten purpuratus ) under daily cyclic hypoxia conditions

Arturo Aguirre-Velarde , Fred Jean , Gérard Thouzeau , Jonathan Flye-Sainte-Marie
Journal of Sea Research (JSR), 2018, 131, pp.85-94. ⟨10.1016/j.seares.2017.11.001⟩
Journal articles hal-02405958v1
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New insights into the seasonal feeding ecology of Pecten maximus using pigments, fatty acids and sterols analyses

Romain Lavaud , Sébastien Artigaud , Fabienne Le Grand , Anne Donval , Philippe Soudant
Marine Ecology Progress Series, 2018, 590, pp.109-129. ⟨10.3354/meps12476⟩
Journal articles hal-02324241v1
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The Impossible Sustainability of the Bay of Brest? Fifty Years of Ecosystem Changes, Interdisciplinary Knowledge Construction and Key Questions at the Science-Policy-Community Interface

Olivier Ragueneau , Mélanie Raimonet , Camille Mazé , Jennifer Coston-Guarini , Laurent Chauvaud
Frontiers in Marine Science, 2018, 5, ⟨10.3389/fmars.2018.00124⟩
Journal articles hal-01769744v1
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Sources of paralytic shellfish toxin accumulation variability in the Pacific oyster Crassostrea gigas

Emilien Pousse , Jonathan Flye-Sainte-Marie , Marianne Alunno-Bruscia , Helene Hegaret , Frédéric Jean
Toxicon, 2018, 144, pp.14-22. ⟨10.1016/j.toxicon.2017.12.050⟩
Journal articles hal-02324600v1
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Building functional groups of marine benthic macroinvertebrates on the basis of general community assembly mechanisms

Nikolaos Alexandridis , Cédric Bacher , Nicolas Desroy , Fred Jean
Journal of Sea Research (JSR), 2017, 121, pp.59-70. ⟨10.1016/j.seares.2017.01.007⟩
Journal articles hal-01510353v1
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A coupled biophysical model for the distribution of the great scallop Pecten maximus in the English Channel

Clément Le Goff , Romain Lavaud , Philippe Cugier , Fred Jean , Jonathan Flye-Sainte-Marie
Journal of Marine Systems, 2017, 167, pp.55-67. ⟨10.1016/j.jmarsys.2016.10.013⟩
Journal articles hal-01394278v1
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Qualitative modelling of functional relationships in marine benthic communities

Nikolaos Alexandridis , Jeffrey M. Dambacher , Fred Jean , Nicolas Desroy , Cédric Bacher
Ecological Modelling, 2017, 360, pp.300-312. ⟨10.1016/j.ecolmodel.2017.07.021⟩
Journal articles hal-02571120v1
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Potential impacts of blooms of the toxic dinoflagellate Karenia brevis on the growth, survival and juvenile recruitment of the non-native green mussel Perna viridis in southeastern United States

Katherine Mcfarland , Fred Jean , Julien Thébault , Aswani K Volety
Toxicon, 2016, 109, pp.94-102. ⟨10.1016/j.toxicon.2015.11.017⟩
Journal articles hal-01239448v1
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Effects of progressive hypoxia on oxygen uptake in juveniles of the Peruvian scallop, Argopecten purpuratus (Lamarck, 1819)

Arturo Aguirre-Velarde , Fred Jean , Gérard Thouzeau , Jonathan Flye-Sainte-Marie
Aquaculture, 2016, 451, pp.385-389. ⟨10.1016/j.aquaculture.2015.07.030⟩
Journal articles hal-01282771v1
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Reproductive strategy of the invasive green mussel may result in increased competition with native fauna in the southeastern United States

Katherine K Mcfarland , Philippe Soudant , Fred Jean , Aswani K Volety
Aquatic Invasions, 2016, 11 (4), pp.411-423. ⟨10.3391/ai.2016.11.4.06⟩
Journal articles hal-01395750v1
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Uptake and elimination of brevetoxin in the invasive green mussel, Perna viridis, during natural Karenia brevis blooms in southwest Florida

Katherine Mcfarland , Fred Jean , Philippe Soudant , Aswani K. Volety
Toxicon, 2015, 97, pp.46-52. ⟨10.1016/j.toxicon.2015.02.005⟩
Journal articles hal-01145560v1
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Sclerochronological records and daily microgrowth of the Peruvian scallop (Argopecten purpuratus, Lamarck, 1819) related to environmental conditions in Paracas Bay, Pisco, Peru

Arturo Aguirre-Velarde , Jonathan Flye-Sainte-Marie , Jaime Mendo , Fred Jean
Journal of Sea Research (JSR), 2015, 99, pp.1-8. ⟨10.1016/j.seares.2015.01.002⟩
Journal articles hal-01145400v1

Deciphering the molecular adaptation of the king scallop (Pecten maximus) to heat stress using transcriptomics and proteomics

Sébastien Artigaud , Joëlle Richard , Michael As Thorne , Romain Lavaud , Jonathan Flye-Sainte-Marie
BMC Genomics, 2015, 16, pp.988. ⟨10.1186/s12864-015-2132-x⟩
Journal articles hal-02552404v1
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Coupling experimental and field-based approaches to decipher carbon sources in the shell of the great scallop, Pecten maximus (L.)

V Marchais , J Richard , A Jolivet , Jonathan Flye-Sainte-Marie , Julien Thébault
Geochimica et Cosmochimica Acta, 2015, 168, pp.58-69. ⟨10.1016/j.gca.2015.07.010⟩
Journal articles hal-01211666v1

Proteomic-based comparison between populations of the Great Scallop, Pecten maximus.

Sébastien Artigaud , Romain Lavaud , Julien Thébault , Fred Jean , Oivind Strand
Journal of Proteomics, 2014, 105, pp.164-73. ⟨10.1016/j.jprot.2014.03.026⟩
Journal articles hal-01022851v1
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A theoretical individual-based model of Brown Ring Disease in Manila clams, Venerupis philippinarum

Christine Paillard , Fred Jean , Susan E. Ford , Eric N. Powell , John Klinck
Journal of Sea Research (JSR), 2014, 91, pp.15-34. ⟨10.1016/j.seares.2014.03.005⟩
Journal articles hal-01056541v1
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Feeding and energetics of the great scallop, Pecten maximus, through a DEB model

Romain Lavaud , Jonathan Flye-Sainte-Marie , Fred Jean , Antoine Emmery , Oivind Strand
Journal of Sea Research (JSR), 2014, 94, pp.5 - 18. ⟨10.1016/j.seares.2013.10.011⟩
Journal articles hal-00917710v1

Deep sequencing of the mantle transcriptome of the great scallop Pecten maximus.

Sébastien Artigaud , Michael a S Thorne , Joëlle Richard , Romain Lavaud , Fred Jean
Marine Genomics, 2014, 15, pp.3-4. ⟨10.1016/j.margen.2014.03.006⟩
Journal articles hal-01022918v1
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Handling enhances the development of brown ring disease signs in Ruditapes philippinarum

Fred Jean , Jonathan Flye-Sainte-Marie , Clémence Oudard , Christine Paillard
Journal of Shellfish Research, 2011, 30 (1), pp.13-15. ⟨10.2983/035.030.0103⟩
Journal articles hal-00568169v2
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Variability of the hemocyte parameters of Ruditapes philippinarum in the field during an annual cycle

Jonathan Flye-Sainte-Marie , Philippe Soudant , Christophe Lambert , Nelly Le Goïc , Madeleine Goncalvez
Journal of Experimental Marine Biology and Ecology, 2009, 377 (1), pp.1-11. ⟨10.1016/j.jembe.2009.06.003⟩
Journal articles hal-00452255v1

A quantitative estimation of the energetic cost of brown ring disease in the Manila clam using Dynamic Energy Budget theory

Jonathan Flye-Sainte-Marie , Fred Jean , Christine Paillard , Sebastian, A.L.M. Kooijman
Journal of Sea Research (JSR), 2009, 62 (2-3), pp.114-123. ⟨10.1016/j.seares.2009.01.007⟩
Journal articles hal-00461368v1

Diurnal heterogeneity in silicic acid fluxes in shallow coastal sites: Causes and implications

Sorcha Ni Longphuirt , Olivier Ragueneau , Laurent Chauvaud , Sophie Martin , Fred Jean
Estuarine, Coastal and Shelf Science, 2009, 82 (3), pp.495-502. ⟨10.1016/j.ecss.2009.02.014⟩
Journal articles hal-00455595v1
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Effect of sediment grain-size on development of brown ring disease in the Manila clam Ruditapes philippinarum

Jonathan Flye-Sainte-Marie , Fred Jean , Susan Ford , Christine Paillard
Aquaculture, 2008, 278 (1-4), pp.184-187. ⟨10.1016/j.aquaculture.2008.03.013⟩
Journal articles hal-00452260v1

Benthic O2 distribution and dynamics in a Mediterranean lagoon: an in situ microelectrode study

K. Dedieu , C. Rabouille , Gérard Thouzeau , F. Jean , Laurent Chauvaud
Estuarine, Coastal and Shelf Science, 2007, 72 (3), pp.393-405
Journal articles hal-00524689v1
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Impact of Brown Ring Disease on the energy budget of the Manila clam Ruditapes philippinarum

Jonathan Flye-Sainte-Marie , Stéphane Pouvreau , Christine Paillard , Fred Jean
Journal of Experimental Marine Biology and Ecology, 2007, 349 (2), pp.378-389. ⟨10.1016/j.jembe.2007.05.029⟩
Journal articles hal-00452254v1
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Ecophysiological dynamic model of individual growth of Ruditapes philippinarum

Jonathan Flye-Sainte-Marie , Fred Jean , Christine Paillard , Susan Ford , Eric Powell
Aquaculture, 2007, 266 (1-4), pp.130-143. ⟨10.1016/j.aquaculture.2007.02.017⟩
Journal articles hal-00452257v1

Benthic O2 distribution and dynamics in a Mediterranean lagoon (Thau, France): An in situ microelectrode study

K. Dedieu , C. Rabouille , Gérard Thouzeau , F. Jean , Laurent Chauvaud
Estuarine, Coastal and Shelf Science, 2007, 72, pp.393-405. ⟨10.1016/j.ecss.2006.11.010⟩
Journal articles hal-00203159v1

Biological control of trace metal and organometal benthic fluxes in a eutrophic lagoon (Thau Lagoon, Mediterranean Sea, France)

D. Point , Mathilde Monperrus , Emmanuel Tessier , David Amouroux , Laurent Chauvaud
Estuarine, Coastal and Shelf Science, 2007, 72 (3), pp.457-471. ⟨10.1016/j.ecss.2006.11.013⟩
Journal articles hal-00460083v1

Benthic community respiration in areas impacted by the invasive mollusk, Crepidula fornicata L.

S. Martin , Gérard Thouzeau , Murielle Richard , Laurent Chauvaud , F. Jean
Marine Ecology Progress Series, 2007, 347, pp.51-60
Journal articles hal-00524678v1

Grazing-induced changes in cell wall silicification in a marine diatom

Philippe Pondaven , Morgane Gallinari , Sophie Chollet , Eva Bucciarelli , Géraldine Sarthou
Protist, 2007, 158 (1), pp.21-28. ⟨10.1016/j.protis.2006.09.002⟩
Journal articles hal-00472048v1

Spatial and temporal variability in benthic biogeochemical fluxes in the Thau lagoon associated with macrophytic and macrofaunal distribution

Gérard Thouzeau , J. Grall , Jacques Clavier , Laurent Chauvaud , F. Jean
Estuarine, Coastal and Shelf Science, 2007, 72 (3), pp.432-447
Journal articles hal-00524693v1

Respiration, calcification and excretion of the invasive limpet, Crepidula fornicata L.: implications for carbon carbonate and nitrogen fluxes

S. Martin , Gérard Thouzeau , Laurent Chauvaud , F. Jean , L. Guérin
Limnology and Oceanography, 2006, 51 (5), pp.1996-2007
Journal articles hal-00524728v1
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Hemocyte characteristics in families of oysters, Crassostrea gigas, selected for differential survival during summer and reared in three sites

Christophe Lambert , Philippe Soudant , Lionel Dégremont , Maryse Delaporte , Jeanne Moal
Aquaculture, 2005, 270, pp.276-288
Journal articles hal-00616866v1

Comparison of Zostera marina and maerl community metabolism

Sophie Martin , Jacques Clavier , Jean-Marc Guarini , Laurent Chauvaud , Christian Hily
Aquatic Botany, 2005, 83, pp.161-174
Journal articles hal-00091287v1

Biodeposition by an invasive suspension feeder impacts the biogeochemical cycle of Si in a coastal ecosystem (Bay of Brest, France)

Olivier Ragueneau , Laurent Chauvaud , Brivaëla Moriceau , Aude Leynaert , Gérard Thouzeau
Biogeochemistry, 2005, 75 (1), pp.19-41
Journal articles hal-00524731v1
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The shell of the Great Scallop Pecten maximus as a high frequency archive of paleoenvironmental change

Laurent Chauvaud , Anne Lorrain , Robert B. Dunbar , Yves-Marie Paulet , Gérard Thouzeau
Geochemistry, Geophysics, Geosystems, 2005, 6 (8), pp.1-15. ⟨10.1029/2004GC000890⟩
Journal articles hal-00452414v1

Direct evidence of a biologically active coastal silicate pump: Ecological implications

Olivier Ragueneau , Laurent Chauvaud , Aude Leynaert , Gérard Thouzeau , Yves-Marie Paulet
Limnology and Oceanography, 2002, 47 (6), pp.1849-1854. ⟨10.4319/lo.2002.47.6.1849⟩
Journal articles hal-00959802v1
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Long-term variation of the Bay of Brest ecosystem: benthic-pelagic coupling revisited

Laurent Chauvaud , F. Jean , Olivier Ragueneau , Gérard Thouzeau
Marine Ecology Progress Series, 2000, 200, pp.35-48
Journal articles hal-00524757v1

Estimate of state variables of a trophic web model in the Bay of Brest

F. Jean , Gérard Thouzeau
Comptes rendus de l’Académie des sciences. Série III, Sciences de la vie, 1995, 318, pp.145-154
Journal articles hal-00524774v1

Quantitative sampling of soft-bottom macroepifauna for assessing the benthic system in the Bay of Brest (France)

Frédéric Jean , Christian Hily
Oceanologica Acta, 1994, 17 (3), pp.319-330
Journal articles hal-00568533v1

Comparing two pectinid species as a fast and a slow depurators of amnesic shellfish toxin through a modelling approach

Eline Le Moan , Laure Régnier-Brisson , Laure Pecquerie , Caroline Fabioux , Fred Jean
Conférence annuelle GdR Phycotox - GIS Cyanobactéries 2023, May 2023, Nantes, France
Conference papers hal-04180049v1

Reconstructing the growth and feeding of the scallop Mimachlamys varia: a DEB application

Laure Régnier-Brisson , Eline Le Moan , Thomas Guyondet , Laure Pecquerie , Philippe Cugier
8th International Symposium on Dynamic Energy Budget Theory for Metabolic Organization, Jun 2023, Baton-Rouge, United States
Conference papers hal-04179984v1

The impossible sustainability of the Bay of Brest? 40 years of ecosystem evolution, interdisciplinary knowledge construction and key questions at the science-policy-communities interface

Olivier Ragueneau , Mélanie Raimonet , Camille Mazé , Jennifer Coston-Guarini , Anatole Danto
International Long Term Ecological Research Network & LTER-France (Zones Ateliers Network & Critical Zone Observatories) joint conference, LTER-France - Zones Ateliers Network & Critical Zone Observatories, Oct 2017, Nantes, France
Conference papers hal-02502083v1

Commande optimale en temps et en énergie d’un procédé biologique d’épuration de l’eau

Walid Bouhafs , Nahla Abdellatif , Frédéric Jean , Jérôme Harmand
International Joint Conference CB-WR-MED Conference/ 2nd AOP’ Tunisia Conference for Sustainable Water Management, Apr 2013, Tunis, Tunisie
Conference papers hal-02744396v1

Impact of Measurement geometry on quantitative characterization of sediment with high-resolution sub-bottom profiling systems (kHz-15kHz)

Sandrine Rakotonarivo , Michel Legris , R. Desmare , F. Jean
Caractérisation du milieu marin, address = Brest, France, year = 2006, month = 16-19 October, pdf = 1, nat = 1,, 2006, France. pp.Non renseigne
Conference papers hal-00518696v1

Mercury species benthic fluxes measurements in coastal environments as influenced by the biological activity

David Amouroux , Mathilde Monperrus , D. Point , E. Tessier , Laurent Chauvaud
7th International Conference on Mercury as a Global Pollutant, 2004, Ljubljana, France. pp.770-773
Conference papers hal-00524827v1

Trophic bioaccumulation of mercury species in macrobenthic organisms from French coastal sites

Mathilde Monperrus , J. Grall , L. Rodriguez , Gérard Thouzeau , F. Jean
7th International Conference on Mercury as a Global Pollutant, 2004, Ljubljana, Slovenia. pp.1226-1230
Conference papers hal-00524829v1

Transfer of metallic contaminants at the sediment-water interface in a coastal lagoon: role of the biological and microbial activity

David Amouroux , Mathilde Monperrus , D. Point , Emamnuel Tessier , Gilles Bareille
XIIth international conference on Heavy metals in the environment, ICHMET, May 2003, Grenoble, France. pp.41-44
Conference papers hal-00524823v1