Francois Moreews

36
Documents

Compétences

biological network modelisation software development bioinformatics semantic web

Publications

22
3
2
2
2
1
1
1
1
1
6
4
2
2
2
2
2
2
2
2
2
2
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
8
7
5
5
4
4
4
4
4
3
3
3
3
3
3
3
3
2
2
2
2
2
2
2
2
2
2
2
2
2
2
2
2
2
2
2
2
2
2
2
2
2
2
2
2
2
2
2
2
2
2
2
2
2
2
2
2
2
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
4
2
2
2
1
1
1
1
1
1
1
1
1
1
2
6
1
2
5
2
5
6
1
1
1
1
1
1
1
1
1
1
1
1
1
1
1
17
17
6
5
4
4
3
1
1
1
1
1
1
1
1
1

Publications

Image document

Fixing molecular complexes in BioPAX standards to enrich interactions and detect redundancies using Semantic Web Technologies

Camille Juigné , Olivier Dameron , François Moreews , Florence Gondret , Emmanuelle Becker
Bioinformatics, 2023, 39 (5), pp.btad257. ⟨10.1093/bioinformatics/btad257⟩
Article dans une revue hal-04084869 v1
Image document

PAX2GRAPHML: a Python library for large-scale regulation network analysis using BIOPAX

François Moreews , Hugo Simon , Anne Siegel , Florence Gondret , Emmanuelle Becker
Bioinformatics, 2021, 37 (24), pp.4889-4891. ⟨10.1093/bioinformatics/btab441⟩
Article dans une revue hal-03265223 v1
Image document

The BioMart community portal: an innovative alternative to large, centralized data repositories

Damian Smedley , Syed Haider , Steffen Durinck , Luca Pandini , Paolo Provero et al.
Nucleic Acids Research, 2015, 43 (W1), pp.W589-W598. ⟨10.1093/nar/gkv350⟩
Article dans une revue hal-01146849 v1

An integrated approach to bovine oocyte quality: from phenotype to genes

Leslie Angulo , Catherine Guyader-Joly , Sylvain Auclair , Christelle Hennequet-Antier , Pascal Papillier et al.
Reproduction, Fertility and Development, 2015, 28 (9), ⟨10.1071/RD14353⟩
Article dans une revue hal-01194139 v1
Image document

BioShaDock: a community driven bioinformatics shared Docker-based tools registry

François Moreews , Olivier Sallou , Hervé Ménager , Yvan Le Bras , Cyril Monjeaud et al.
Article dans une revue hal-01243520 v1
Image document

Characterization of rainbow trout gonad, brain and gill deep cDNA repertoires using a Roche 454-Titanium sequencing approach

Aurélie Le Cam , Julien Bobe , Olivier Bouchez , Cédric Cabeau , Olivier Kah et al.
Gene, 2012, 500 (1), pp.32-39. ⟨10.1016/j.gene.2012.03.053⟩
Article dans une revue istex hal-01205069 v1
Image document

Oocyte-somatic cells interactions, lessons from evolution.

Cathy Charlier , Jérôme Montfort , Olivier Chabrol , Daphné Brisard , Thuy Thao Vi Nguyen et al.
BMC Genomics, 2012, 13 (1), pp.560. ⟨10.1186/1471-2164-13-560⟩
Article dans une revue hal-00753310 v1
Image document

SigReannot-mart: a query environment for expression microarray probe re-annotations.

François Moreews , Gaelle Rauffet , Patrice Dehais , Christophe Klopp
Database - The journal of Biological Databases and Curation, 2011, 2011, pp.bar025. ⟨10.1093/database/bar025⟩
Article dans une revue inria-00638684 v1
Image document

BioMart Central Portal: an open database network for the biological community

Jonathan M. Guberman , J. Ai , O. Arnaiz , Baran Joachim , Andrew Blake et al.
Database - The journal of Biological Databases and Curation, 2011, pp.bar041. ⟨10.1093/database/bar041⟩
Article dans une revue inria-00638749 v1
Image document

Generation and analysis of a 29,745 unique Expressed Sequence Tags from the Pacific oyster (Crassostrea gigas) assembled into a publicly accessible database: the GigasDatabase

Elodie Fleury , Arnaud Huvet , Christophe Lelong , Julien de Lorgeril , Viviane Boulo et al.
BMC Genomics, 2009, 10 (341), pp.341. ⟨10.1186/1471-2164-10-341⟩
Article dans une revue inria-00435769 v1
Image document

BioQuali Cytoscape plugin: analysing the global consistency of regulatory networks

Carito Guziolowski , Annabel Bourdé , François Moreews , Anne Siegel
BMC Genomics, 2009, 26 (10), pp.244. ⟨10.1186/1471-2164-10-244⟩
Article dans une revue inria-00429804 v1
Image document

sigReannot: an oligo-set re-annotation pipeline based on similarities with the Ensembl transcripts and Unigene clusters.

Casel Pierrot , François Moreews , Christophe Klopp
BMC Proceedings, 2009, 3 (4), pp.1-5. ⟨10.1186/1753-6561-3-S4-S3⟩
Article dans une revue inria-00435746 v1
Image document

Transcriptome profiling of the feeding-to-fasting transition in chicken liver.

Colette Désert , Michel Jacques M.J. Duclos , Pierre Blavy , Frédéric Lecerf , François Moreews et al.
BMC Genomics, 2008, 9 (611), pp.611. ⟨10.1186/1471-2164-9-611⟩
Article dans une revue hal-00729919 v1

Accurate prediction of BRCA1 and BRCA2 heterozygous genotype using expression profiling after induced DNA damage.

Zsofia Kote-Jarai , Lucy Matthews , Ana Osorio , Susan Shanley , Ian Giddings et al.
Clinical Cancer Research, 2006, Clin Cancer Res. 2006 Jul 1;12(13):3896-901
Article dans une revue inria-00180301 v1
Image document

RPBS: a web resource for structural bioinformatics

Cynthia Alland , François Moreews , D. Boens , Mathilde Carpentier , Sylvain Chiusa et al.
Nucleic Acids Research, 2005, 33 (2), pp.W44-W49. ⟨10.1093/nar/gki477⟩
Article dans une revue hal-04712180 v1
Image document

Detection and correction of non-conformities and redundancies in complexes of molecules in BioPAX

Camille Juigné , Olivier Dameron , François Moreews , Florence Gondret , Emmanuelle Becker
Journées Ouvertes en Biologie, Informatique et Mathématiques (JOBIM), Jul 2022, Rennes, France. pp.1-25
Communication dans un congrès hal-03752473 v1

An application suite based on the IFB Container as a Service platform

François Moreews , Olivier Sallou , Olivier Collin
ECCB 2016 (Elixir Talks) , ISCB, Sep 2016, Den Haag, Netherlands
Communication dans un congrès hal-01394295 v1
Image document

A curated Domain centric shared Docker registry linked to the Galaxy toolshed

François Moreews , Olivier Sallou , Yvan Le Bras , Grosjean Marie , Cyril Monjeaud et al.
Galaxy Community Conference 2015, Jul 2015, Norwich, United Kingdom
Communication dans un congrès hal-01160514 v1

Integrating GALAXY workflows in a metadata management environment

François Moreews , Yvan Le Bras , Olivier Dameron , Cyril Monjeaud , Olivier Collin
Galaxy Community Conference, Jul 2014, Baltimore, United States
Communication dans un congrès hal-01093058 v1

OBIWEE : an open source bioinformatics cloud environment

François Moreews , Jonathan Piat , Olivier Sallou
BOSC 2011 - 12th Annual Bioinformatics Open Source Conference, Jul 2011, Vienne, Austria
Communication dans un congrès inria-00638715 v1
Image document

A new method for modeling reactions and regulations to analyze high-throughout data

Pierre Blavy , Florence Gondret , Sven Thiele , Carito Guziolowski , Sandrine Lagarrigue et al.
4. International Symposium on Animal Functional Genomics, Sorcha De Gras; Sorcha De Gras, Oct 2011, Dublin, Ireland
Communication dans un congrès hal-02748096 v1
Image document

SLICEE: A Service oriented middleware for intensive scientific computation

Jonathan Piat , François Moreews , Olivier Collin , Dominique Lavenier , Alexandre Cornu
SERVICES 2011, Jul 2011, WASHINGTON DC, United States
Communication dans un congrès inria-00638694 v1

BioDesc : gestion d'un entrepôt multiformat de descriptions de ressources bioinformatiques

Philippe Picouet , Z. Doughi , Loraine Brillet , Erwan Corre , Christophe Caron et al.
JOBIM, Sep 2010, Montpellier, France
Communication dans un congrès inria-00540815 v1

Oscile

Cathy Charlier , Jérôme Montfort , Olivier Chabrol , François Moreews , M. Salhab et al.
VIIIe Colloque Agenae / Genanimal, Nov 2010, Bordeaux, France
Communication dans un congrès inria-00540830 v1

A framework for building reliable distributed bioinformatics service repositories

François Moreews
ICWS 2009 International Conference on Web Services, Jul 2009, Los Angeles, United States. ⟨10.1109/ICWS.2009.143⟩
Communication dans un congrès inria-00435752 v1

QBIOS: driving toward a trusted distributed bioinformatics service infrastructure

François Moreews
ISMB 2009 - International Conference On Intelligent Systems for Molecular Biology, Jun 2009, Stockholm, Sweden
Communication dans un congrès inria-00435755 v1

BioWorkFlow: Web Services toolkit and workflow applications evaluation to deploy a confidence network

Marc Wessner , Martin Senger , Franck Samson , Philippe Picouet , François Moreews et al.
Jobim (Journées Ouvertes Biologie Informatique Mathématiques), Jun 2008, Lille, France
Communication dans un congrès inria-00327528 v1

Profils transcriptomiques de foies de poulet soumis au jeûne : utilisation d'une puce à ADN de 20000 oligonucléotides

Marc Aubry , Colette Désert , Pierre Blavy , Frédéric Lecerf , Michel Jacques M.J. Duclos et al.
Journées Scientifiques, Département de Génétique Animale, Apr 2008, Lacanau, France
Communication dans un congrès hal-00729786 v1

GEO EXPORTER : a tools to automate publishing of microarray data to Gene Expression Omnibus

François Moreews
ISMB 2008, The International Society for Computational Biology, Jul 2008, Toronto, Canada
Communication dans un congrès inria-00329898 v1