Nicolas Terrapon

82
Documents
Affiliations actuelles
  • Architecture et fonction des macromolécules biologiques (AFMB)
  • Aix Marseille Université (AMU)
Identifiants chercheurs

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Publications

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Snow- and ice-ecosystem cleaning capability of the pucciniomycotinous yeast Phenoliferia psychrophenolica

Jade Ezzedine , Pierre Guenzi-Tiberi , Gaëlle Villain , Riccardo Aiese Cigliano , Yacine Diagne et al.

Communications Biology, 2025, 8 (1), pp.1084. ⟨10.1038/s42003-025-08506-w⟩

Article dans une revue hal-05285714v1

Publisher Correction: A metagenomic ‘dark matter’ enzyme catalyses oxidative cellulose conversion

Clelton Santos , Mariana Morais , Fernanda Mandelli , Evandro Lima , Renan Miyamoto et al.

Nature, 2025, 640 (8058), pp.E7-E7. ⟨10.1038/s41586-025-08872-9⟩

Article dans une revue hal-05507999v1
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Bacterial polysaccharide lyase family 33: Specificity from an evolutionarily conserved binding tunnel

Mélanie Loiodice , Elodie Drula , Zak Mciver , Svetlana Antonyuk , Arnaud Baslé et al.

Proceedings of the National Academy of Sciences of the United States of America, 2025, 122 (7), pp.e2421623122. ⟨10.1073/pnas.2421623122⟩

Article dans une revue hal-04968947v1
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Structural and Functional Dissection of GH161 β-Glucan Phosphorylases: Molecular Specificities and Dynamics of Catalysis of Dimeric GH-Q Enzymes

Nina Cooper , Simon Ladevèze , Ao Li , Ramteen Shayan , Régis Fauré et al.

ACS Catalysis, 2025, 15 (22), pp.19312-19327. ⟨10.1021/acscatal.5c05191⟩

Article dans une revue hal-05377303v1
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Division of the large and multifunctional glycoside hydrolase family 2: high functional specificity and biochemical assays in the uncharacterized subfamilies

Annie Lebreton , Marie-Line Garron , Marlene Vuillemin , Bo Pilgaard , Bastian Hornung et al.

Biotechnology for Biofuels and Bioproducts, 2025, 18 (1), pp.68. ⟨10.1186/s13068-025-02669-8⟩

Article dans une revue hal-05285721v1

Dividing the α-amylase family GH57 of starch hydrolases and related enzymes into subfamilies using evolutionary, clustering and functional criteria

Adam Poláček , Vincent Lombard , Pedro Coutinho , Nicolas Terrapon , Štefan Janeček

International Journal of Biological Macromolecules, 2025, 309 (2), pp.142823. ⟨10.1016/j.ijbiomac.2025.142823⟩

Article dans une revue hal-05163099v1
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A metagenomic ‘dark matter’ enzyme catalyses oxidative cellulose conversion

Clelton Santos , Mariana Morais , Fernanda Mandelli , Evandro Lima , Renan Miyamoto et al. Article dans une revue hal-04948755v1

Glycoside hydrolase–mediated glucomannan catabolism in Segatella copri , a target of microbiota-directed foods for malnourished children

Cyrus Zhou , Matthew Hibberd , Evan Lee , Bo Pilgaard , Marlene Vuillemin et al.

Proceedings of the National Academy of Sciences of the United States of America, 2025, 122 (49), pp.e2521522122. ⟨10.1073/pnas.2521522122⟩

Article dans une revue hal-05465980v1
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Streptomyces castrisilvae sp. nov. and Streptomyces glycanivorans sp. nov., novel soil streptomycetes metabolizing mutan and alternan

Tove Widén , Albert Tafur Rangel , Vincent Lombard , Elodie Drula , Scott Mazurkewich et al.

International Journal of Systematic and Evolutionary Microbiology, 2024, 74 (9), pp.006514. ⟨10.1099/ijsem.0.006514⟩

Article dans une revue hal-04882192v1

Two newly established and mutually related subfamilies GH13_48 and GH13_49 of the α-amylase family GH13

Filip Mareček , Nicolas Terrapon , Štefan Janeček

Applied Microbiology and Biotechnology, 2024, 108 (1), pp.415. ⟨10.1007/s00253-024-13251-x⟩

Article dans une revue hal-04690683v1
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Prevotella copri and microbiota members mediate the beneficial effects of a therapeutic food for malnutrition

Hao-Wei Chang , Evan Lee , Yi Wang , Cyrus Zhou , Kali Pruss et al.

Nature Microbiology, 2024, 9 (4), pp.922-937. ⟨10.1038/s41564-024-01628-7⟩

Article dans une revue hal-04579760v1
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Unveiling the role of novel carbohydrate‐binding modules in laminarin interaction of multimodular proteins from marine Bacteroidota during phytoplankton blooms

Marie-Katherin Zühlke , Elizabeth Ficko-Blean , Daniel Bartosik , Nicolas Terrapon , Alexandra Jeudy et al.

Environmental Microbiology, 2024, 26 (5), pp.e16624. ⟨10.1111/1462-2920.16624⟩

Article dans une revue hal-04579759v1
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Elizabethkingia anophelis MSU001 Isolated from Anopheles stephensi: Molecular Characterization and Comparative Genome Analysis

Shicheng Chen , Steven Pham , Nicolas Terrapon , Jochen Blom , Edward Walker

Microorganisms, 2024, 12 (6), pp.1079. ⟨10.3390/microorganisms12061079⟩

Article dans une revue hal-04690689v1
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Evolutionary genomics of the emergence of brown algae as key components of coastal ecosystems

France Denoeud , Olivier Godfroy , Corinne Cruaud , Svenja Heesch , Zofia Nehr et al.

Cell, 2024, 187 (24), pp.6943-6965. ⟨10.1016/j.cell.2024.10.049⟩

Article dans une revue hal-04794231v1

A microbiome-directed therapeutic food for children recovering from severe acute malnutrition

Steven Hartman , Matthew Hibberd , Ishita Mostafa , Nurun Naila , Md Munirul Islam et al.

Science Translational Medicine, 2024, 16 (767), pp.eadn2366. ⟨10.1126/scitranslmed.adn2366⟩

Article dans une revue hal-04911133v1

Ruminococcus torques is a keystone degrader of intestinal mucin glycoprotein, releasing oligosaccharides used by Bacteroides thetaiotaomicron

Sadie Schaus , Gabriel Vasconcelos Pereira , Ana Luis , Emily Madlambayan , Nicolas Terrapon et al.

mBio, 2024, 15 (8), pp.e0003924. ⟨10.1128/mbio.00039-24⟩

Article dans une revue hal-04690680v1

In vivo manipulation of human gut Bacteroides fitness by abiotic oligosaccharides

Darryl Wesener , Zachary Beller , Megan Hill , Han Yuan , David Belanger et al.

Nature Chemical Biology, 2024, ⟨10.1038/s41589-024-01763-6⟩

Article dans une revue hal-04911123v1
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Candidate genes involved in biosynthesis and degradation of the main extracellular matrix polysaccharides of brown algae and their probable evolutionary history

Lisa Mazéas , Ahlem Bouguerba-Collin , J. Mark Cock , France Denoeud , Olivier Godfroy et al.

BMC Genomics, 2024, 25 (1), pp.950. ⟨10.1186/s12864-024-10811-3⟩

Article dans une revue hal-04734202v1

BoGH13ASus from Bacteroides ovatus represents a novel α-amylase used for Bacteroides starch breakdown in the human gut

Haley Brown , Anna Deveaux , Brock Juliano , Amanda Photenhauer , Matthieu Boulinguiez et al.

Cellular and Molecular Life Sciences, 2023, 80 (8), pp.232. ⟨10.1007/s00018-023-04812-w⟩

Article dans une revue hal-04461076v1
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A subfamily classification to choreograph the diverse activities within glycoside hydrolase family 31

Thimali Arumapperuma , Jinling Li , Bastian Hornung , Niccolay Madiedo Soler , Ethan Goddard-Borger et al.

Journal of Biological Chemistry, 2023, 299 (4), pp.103038. ⟨10.1016/j.jbc.2023.103038⟩

Article dans une revue hal-04070174v1
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Bioactive glycans in a microbiome-directed food for children with malnutrition

Matthew Hibberd , Daniel Webber , Dmitry Rodionov , Suzanne Henrissat , Robert Chen et al.

Nature, 2023, 625 (7993), pp.157-165. ⟨10.1038/s41586-023-06838-3⟩

Article dans une revue hal-04472779v1
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Inducible CRISPR-targeted “knockdown” of human gut Bacteroides in gnotobiotic mice discloses glycan utilization strategies

Zachary Beller , Darryl Wesener , Timothy Seebeck , Janaki Guruge , Alexandra Byrne et al.

Proceedings of the National Academy of Sciences of the United States of America, 2023, 120 (39), pp.e2311422120. ⟨10.1073/pnas.2311422120⟩

Article dans une revue hal-04472785v1
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Taxonomic composition and carbohydrate-active enzyme content in microbial enrichments from pulp mill anaerobic granules after cultivation on lignocellulosic substrates

Mabel T Wong , Camilla L Nesbø , Weijun Wang , Marie Couturier , Vincent Lombard et al.

Frontiers in Microbiomes, 2023, 2, pp.1094865. ⟨10.3389/frmbi.2023.1094865⟩

Article dans une revue (data paper) hal-04681775v1
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Hadza Prevotella require diet-derived microbiota-accessible carbohydrates to persist in mice

Rebecca Gellman , Matthew Olm , Nicolas Terrapon , Fatima Enam , Steven Higginbottom et al.

Cell Reports, 2023, 42 (11), pp.113233. ⟨10.1016/j.celrep.2023.113233⟩

Article dans une revue hal-04461077v1
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An objective criterion to evaluate sequence-similarity networks helps in dividing the protein family sequence space

Bastian Volker Helmut Hornung , Nicolas Terrapon

PLoS Computational Biology, 2023, 19 (8), pp.e1010881. ⟨10.1371/journal.pcbi.1010881⟩

Article dans une revue hal-04461074v1
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The carbohydrate-active enzyme database: functions and literature

Elodie Drula , Marie-Line Garron , Suzan Dogan , Vincent Lombard , Bernard Henrissat et al.

Nucleic Acids Research, 2022, 50 (D1), pp.D571-D577. ⟨10.1093/nar/gkab1045⟩

Article dans une revue hal-03588994v1

Glycoside hydrolase subfamily GH5_57 features a highly redesigned catalytic interface to process complex hetero-β-mannans

Marcele Martins , Mariana Morais , Gabriela Persinoti , Rafael Galinari , Li Yu et al.

Acta crystallographica Section D : Structural biology [1993-..], 2022, 78 (11), pp.1358-1372. ⟨10.1107/S2059798322009561⟩

Article dans une revue hal-03982004v1
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Phenotypic and Genomic Diversification in Complex Carbohydrate-Degrading Human Gut Bacteria

Nicholas Pudlo , Karthik Urs , Ryan Crawford , Ali Pirani , Todd Atherly et al.

mSystems, 2022, 7 (1), pp.e0094721. ⟨10.1128/msystems.00947-21⟩

Article dans une revue hal-03589021v1
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Functional exploration of the glycoside hydrolase family GH113

Marie Couturier , Mélanie Touvrey-Loiodice , Nicolas Terrapon , Elodie Drula , Laurine Buon et al.

PLoS ONE, 2022, 17 (4), pp.1-14. ⟨10.1371/journal.pone.0267509⟩

Article dans une revue hal-03656671v1
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Gut microbiome of the largest living rodent harbors unprecedented enzymatic systems to degrade plant polysaccharides

Lucelia Cabral , Gabriela Persinoti , Douglas Paixão , Marcele Martins , Mariana Morais et al.

Nature Communications, 2022, 13 (1), pp.629. ⟨10.1038/s41467-022-28310-y⟩

Article dans une revue hal-03589026v1
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Assembly and synthesis of the extracellular matrix in brown algae

Lisa Mazéas , Rina Yonamine , Tristan Barbeyron , Bernard Henrissat , Elodie Drula et al.

Seminars in Cell and Developmental Biology, In press, 134, pp.112-124. ⟨10.1016/j.semcdb.2022.03.005⟩

Article dans une revue hal-03627114v1

Microbial liberation of N-methylserotonin from orange fiber in gnotobiotic mice and humans

Nathan Han , Jiye Cheng , Omar Delannoy-Bruno , Daniel Webber , Nicolas Terrapon et al.

Cell, 2022, 185 (16), pp.3056-3057. ⟨10.1016/j.cell.2022.07.007⟩

Article dans une revue hal-03821289v1
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Strain-level functional variation in the human gut microbiota based on bacterial binding to artificial food particles

Michael Patnode , Janaki Guruge , Juan Castillo , Garret Couture , Vincent Lombard et al.

Cell Host & Microbe, 2021, 29 (4), pp.664-673.e5. ⟨10.1016/j.chom.2021.01.007⟩

Article dans une revue hal-03354016v1
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Bioinformatic Analysis of Lytic Polysaccharide Monooxygenases Reveals the Pan-Families Occurrence of Intrinsically Disordered C-Terminal Extensions

Ketty C Tamburrini , Nicolas Terrapon , Vincent Lombard , Bastien Bissaro , Sonia Longhi et al.

Biomolecules, 2021, 11 (11), pp.1632. ⟨10.3390/biom11111632⟩

Article dans une revue hal-03431539v1
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Polysaccharide utilization loci-driven enzyme discovery reveals BD-FAE: a bifunctional feruloyl and acetyl xylan esterase active on complex natural xylans

Lisanne Hameleers , Leena Penttinen , Martina Ikonen , Léa Jaillot , Régis Fauré et al.

Biotechnology for Biofuels, 2021, 14 (1), ⟨10.1186/s13068-021-01976-0⟩

Article dans une revue hal-03270620v1
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Genome Features of Asaia sp. W12 Isolated from the Mosquito Anopheles stephensi Reveal Symbiotic Traits

Shicheng Chen , Ting Yu , Nicolas Terrapon , Bernard Henrissat , Edward D Walker

Genes, 2021, 12 (5), pp.752. ⟨10.3390/genes12050752⟩

Article dans une revue hal-03279784v1
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Metabolism of multiple glycosaminoglycans by Bacteroides thetaiotaomicron is orchestrated by a versatile core genetic locus

Didier Ndeh , Arnaud Baslé , Henrik Strahl , Urszula Mcclurgg , Bernard Henrissat et al.

Nature Communications, 2020, 11 (1), ⟨10.1038/s41467-020-14509-4⟩

Article dans une revue hal-03162776v1
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Investigating host-microbiome interactions by droplet based microfluidics

Alexandra S Tauzin , Mariana Rangel Pereira , Liisa D van Vliet , Pierre-Yves Colin , Elisabeth Laville et al.

Microbiome, 2020, 8 (1), ⟨10.1186/s40168-020-00911-z⟩

Article dans une revue hal-02961383v1
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A catalog of microbial genes from the bovine rumen unveils a specialized and diverse biomass-degrading environment

Junhua Li , Huanzi Zhong , Yuliaxis Y. Ramayo-Caldas , Nicolas Terrapon , Vincent Lombard et al.

GigaScience, 2020, 9 (6), pp.1-15. ⟨10.1093/gigascience/giaa057⟩

Article dans une revue hal-02860679v1
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Analysis of the diversity of the glycoside hydrolase family 130 in mammal gut microbiomes reveals a novel mannoside-phosphorylase function

Ao Li , Elisabeth Laville , Laurence Tarquis , Vincent Lombard , David Ropartz et al.

Microbial Genomics, 2020, 6 (10), pp.1-14. ⟨10.1099/mgen.0.000404⟩

Article dans une revue hal-02949655v1
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Microbiota-directed fibre activates both targeted and secondary metabolic shifts in the distal gut

Leszek Michalak , John Christian Gaby , Leidy Lagos , Sabina Leanti La Rosa , Torgeir Hvidsten et al.

Nature Communications, 2020, 11 (1), ⟨10.1038/s41467-020-19585-0⟩

Article dans une revue hal-03163522v1
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Harvesting of Prebiotic Fructooligosaccharides by Nonbeneficial Human Gut Bacteria

Zhi Wang , Alexandra S. Tauzin , Elisabeth Laville , Pietro Tedesco , Fabien Letisse et al.

mSphere, 2020, 5 (1), 26 p. ⟨10.1128/mSphere.00771-19⟩

Article dans une revue hal-02478442v1
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Isolation and Characterization of Extracellular Vesicles Secreted In Vitro by Porcine Microbiota

Leidy Lagos , Sabina Leanti La Rosa , Magnus Ø. Arntzen , Ragnhild Ånestad , Nicolas Terrapon et al.

Microorganisms, 2020, 8 (7), pp.983. ⟨10.3390/microorganisms8070983⟩

Article dans une revue hal-03162747v1
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Discovery of novel carbohydrate-active enzymes through the rational exploration of the protein sequences space

William Helbert , Laurent Poulet , Sophie Drouillard , Sophie Mathieu , Mélanie Loiodice et al.

Proceedings of the National Academy of Sciences of the United States of America, 2019, 116 (13), pp.6063-6068. ⟨10.1073/pnas.1815791116⟩

Article dans une revue hal-02108378v1
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Bacteroidetes use thousands of enzyme combinations to break down glycans

Pascal Lapébie , Vincent Lombard , Elodie Drula , Nicolas Terrapon , Bernard Henrissat

Nature Communications, 2019, 10 (2043), pp.1. ⟨10.1038/s41467-019-10068-5⟩

Article dans une revue hal-02588181v1
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A subfamily roadmap for functional glycogenomics of the evolutionarily diverse Glycoside Hydrolase Family 16 (GH16)

Alexander Holm Viborg , Nicolas Terrapon , Vincent Lombard , Gurvan Michel , Mirjam Czjzek et al.

Journal of Biological Chemistry, In press, 294 (44), pp.15973 - 15986. ⟨10.1074/jbc.RA119.010619⟩

Article dans une revue hal-02291008v2
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Comparative genomic analyses reveal diverse virulence factors and antimicrobial resistance mechanisms in clinical Elizabethkingia meningoseptica strains

Jochen Blom , Nicolas Terrapon , Shicheng Chen , Marty Soehnlen , Jochen Blom Id et al.

PLoS ONE, 2019, 14 (10), pp.e0222648. ⟨10.1371/journal.pone.0222648⟩

Article dans une revue hal-02972534v1
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Interspecies Competition Impacts Targeted Manipulation of Human Gut Bacteria by Fiber-Derived Glycans

Michael Patnode , Zachary Beller , Nathan Han , Jiye Cheng , Samantha Peters et al.

Cell, 2019, 179 (1), pp.59-73.e13. ⟨10.1016/j.cell.2019.08.011⟩

Article dans une revue hal-02588032v1
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PULDB: the expanded database of Polysaccharide Utilization Loci

Nicolas Terrapon , Vincent Lombard , Elodie Drula , Pascal Lapébie , Saad Al-Masaudi et al.

Nucleic Acids Research, 2018, 46 (D1), pp.D677-D683. ⟨10.1093/nar/gkx1022⟩

Article dans une revue hal-02094620v1
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Cultivation and sequencing of rumen microbiome members from the Hungate1000 Collection

Rekha Seshadri , Sinead Leahy , Graeme Attwood , Koon Hoong Teh , Suzanne Lambie et al.

Nature Biotechnology, 2018, 36 (4), pp.359-367. ⟨10.1038/nbt.4110⟩

Article dans une revue hal-02094598v1
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Dietary pectic glycans are degraded by coordinated enzyme pathways in human colonic Bacteroides

Ana R Luis , Jonathon Briggs , Xiaoyang Zhang , Benjamin Farnell , Didier Ndeh et al.

Nature Microbiology, 2018, 3 (2), pp.210-219. ⟨10.1038/s41564-017-0079-1⟩

Article dans une revue hal-02094616v1
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A surface endogalactanase in Bacteroides thetaiotaomicron confers keystone status for arabinogalactan degradation

Alan Cartmell , Li Muñoz-Muñoz , Jonathon Briggs , Didier Ndeh , Elisabeth Lowe et al.

Nature Microbiology, 2018, 3 (11), pp.1314-1326. ⟨10.1038/s41564-018-0258-8⟩

Article dans une revue hal-02094506v1
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Unusual active site location and catalytic apparatus in a glycoside hydrolase family

Jose Munoz-Munoz , Alan Cartmell , Nicolas Terrapon , Bernard Henrissat , Harry J. Gilbert

Proceedings of the National Academy of Sciences of the United States of America, 2017, 114 (19), pp.4936-4941. ⟨10.1073/pnas.1701130114⟩

Article dans une revue hal-01607615v1
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Complex pectin metabolism by gut bacteria reveals novel catalytic functions

Didier Ndeh , Artur Rogowski , Alan Cartmell , Ana S. Luis , Arnaud Basle et al.

Nature, 2017, 544 (7648), pp.65 - +. ⟨10.1038/nature21725⟩

Article dans une revue hal-01595600v1
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An evolutionarily distinct family of polysaccharide lyases removes rhamnose capping of complex arabinogalactan proteins

Jose Munoz-Munoz , Alan Cartmell , Nicolas Terrapon , Arnaud Basle , Bernard Henrissat et al.

Journal of Biological Chemistry, 2017, 292 (32), pp.13271 - 13283. ⟨10.1074/jbc.M117.794578⟩

Article dans une revue hal-01606932v1

A bioinformatics analysis of 3400 lytic polysaccharide oxidases from family AA9

Nicolas Lenfant , Matthieu Hainaut , Nicolas Terrapon , Elodie Drula , Vincent Lombard et al.

Carbohydrate Research, 2017, 448, pp.166-174. ⟨10.1016/j.carres.2017.04.012⟩

Article dans une revue hal-01595066v1
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A fibrolytic potential in the human ileum mucosal microbiota revealed by functional metagenomic

Orlane Patrascu , Fabienne Beguet-Crespel , Ludovica Marinelli , Emmanuelle Le Chatelier , Anne-Laure Abraham et al.

Scientific Reports, 2017, 7, ⟨10.1038/srep40248⟩

Article dans une revue hal-01606551v1
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Comparative Metagenomics of Cellulose- and Poplar Hydrolysate-Degrading Microcosms from Gut Microflora of the Canadian Beaver (Castor canadensis) and North American Moose (Alces americanus) after Long-Term Enrichment

Mabel Wong , Weijun Wang , Marie Couturier , Fakhria Razeq , Vincent Lombard et al.

Frontiers in Microbiology, 2017, 8, pp.2504. ⟨10.3389/fmicb.2017.02504⟩

Article dans une revue hal-01802956v1

Ninety-nine de novo assembled genomes from the moose (Alces alces) rumen microbiome provide new insights into microbial plant biomass degradation

Olov Svartström , Johannes Alneberg , Nicolas Terrapon , Vincent Lombard , Ino de Bruijn et al.

The International Society of Microbiologial Ecology Journal, 2017, 11 (11), pp.2538-2551. ⟨10.1038/ismej.2017.108⟩

Article dans une revue hal-02328246v1
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How members of the human gut microbiota overcome the sulfation problem posed by glycosaminoglycans

Alan Cartmell , Elisabeth Lowe , Arnaud Basle , Susan Firbank , Didier Ndeh et al.

Proceedings of the National Academy of Sciences of the United States of America, 2017, 114 (27), pp.7037-7042. ⟨10.1073/pnas.1704367114⟩

Article dans une revue hal-01802836v1
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A Dietary Fiber-Deprived Gut Microbiota Degrades the Colonic Mucus Barrier and Enhances Pathogen Susceptibility

Mahesh S. Desai , Anna M. Seekatz , Nicole M. Koropatkin , Nobuhiko Kamada , Christina A. Hickey et al.

Cell, 2016, 167 (5), pp.1339-1353. ⟨10.1016/j.cell.2016.10.043⟩

Article dans une revue hal-01439105v1
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Unraveling the pectinolytic function of Bacteroides xylanisolvens using a RNA-seq approach and mutagenesis

Jordane Despres , Evelyne Forano , Pascale Lepercq , Sophie Comtet-Marre , Grégory Jubelin et al.

BMC Genomics, 2016, 17 (1), pp.147. ⟨10.1186/s12864-016-2472-1⟩

Article dans une revue hal-01439085v1
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Xylan degradation by the human gut Bacteroides xylanisolvens XB1A(T) involves two distinct gene clusters that are linked at the transcriptional level

Jordane Despres , Evelyne Forano , Pascale Lepercq , Sophie Comtet-Marre , Grégory Jubelin et al.

BMC Genomics, 2016, 17 (1), ⟨10.1186/s12864-016-2680-8⟩

Article dans une revue hal-01439065v1
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Unraveling the pectinolytic function of Bacteroides xylanisolvens using a RNA-seq approach and mutagenesis

Jordane Despres , Evelyne Forano , Pascale Lepercq , Sophie Comtet-Marre , Grégory Jubelin et al.

BMC Genomics, 2016, 27 (17), ⟨10.1186/s12864-016-2758-3⟩

Article dans une revue hal-01439068v1
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Glycan complexity dictates microbial resource allocation in the large intestine

Artur Rogowski , Jonathon A. Briggs , Jennifer C. Mortimer , Theodora Tryfona , Nicolas Terrapon et al.

Nature Communications, 2015, 6, ⟨10.1038/ncomms8481⟩

Article dans une revue hal-01439017v1

Automatic prediction of polysaccharide utilization loci in Bacteroidetes species

Nicolas Terrapon , Vincent Lombard , Harry J. Gilbert , Bernard Henrissat

Bioinformatics, 2015, 31 (5), pp.647-655. ⟨10.1093/bioinformatics/btu716⟩

Article dans une revue hal-01438994v1
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Genetic determinants of in vivo fitness and diet responsiveness in multiple human gut Bacteroides

Meng Wu , Nathan P. Mcnulty , Dmitry A. Rodionov , Matvei S. Khoroshkin , Nicholas W. Griffin et al.

Science, 2015, 350 (6256), ⟨10.1126/science.aac5992⟩

Article dans une revue hal-01439023v1

How do gut microbes break down dietary fiber?

Nicolas Terrapon , Bernard Henrissat

Trends in Biochemical Sciences, 2014, 39 (4), pp.156-158. ⟨10.1016/j.tibs.2014.02.005⟩

Article dans une revue hal-05042026v1
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Identification of divergent protein domains by combining HMM-HMM comparisons and co-occurrence detection

Amel Ghouila , Isabelle Florent , Fatma Zahra Guerfali , Nicolas Terrapon , Dhafer Laouini et al.

PLoS ONE, 2014, 9 (6), pp.e95275. ⟨10.1371/journal.pone.0095275⟩

Article dans une revue pasteur-01060276v1
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Fitting hidden Markov models of protein domains to a target species: application to Plasmodium falciparum.

Nicolas Terrapon , Olivier Gascuel , Eric Marechal , Laurent Brehelin

BMC Bioinformatics, 2012, 13 (1), pp.67. ⟨10.1186/1471-2105-13-67⟩

Article dans une revue hal-00701611v1
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EuPathDomains: The Divergent Domain Database for Eukaryotic Pathogens

Amel Ghouila , Nicolas Terrapon , Olivier Gascuel , Fatma Guerfali , Dhafer Laouini et al.

Infection, Genetics and Evolution, 2011, 11 (4), pp.698-707. ⟨10.1016/j.meegid.2010.09.008⟩

Article dans une revue istex lirmm-00540932v1
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Detection of new protein domains using co-occurrence: application to Plasmodium falciparum

Nicolas Terrapon , Olivier Gascuel , Eric Maréchal , Laurent Brehelin

Bioinformatics, 2009, 25, pp.3077-83. ⟨10.1093/bioinformatics/btp560⟩

Article dans une revue lirmm-00431171v1

Approches non conventionnelles de production du L-Rhamnose par bioconversion

Elodie Peghaire , Thomas Flahaut , Gwendoline Christophe , Pascal Dubessay , Alina-Violeta Ursu et al.

Polymerix 2024, 8ème édition, Jun 2024, Rennes, France

Communication dans un congrès hal-04874024v1

Functional metagenomics for sweet dreams

Gabrielle Potocki-Veronese , Sophie Lajus , Laurence Tarquis , Simon Ladevèze , Julien Durand et al.

6th International Conference on Functional Metagenomics, Jun 2024, Skukuza, South Africa

Communication dans un congrès hal-04779504v1

Fitting Hidden Markov Models of Protein Domains to a Target Species

Nicolas Terrapon , Olivier Gascuel , Laurent Brehelin

JOBIM 2011 - 12es Journées Ouvertes en Biologie, Informatique et Mathématiques, Jun 2011, Paris, France. pp.193-194

Communication dans un congrès lirmm-00725501v1
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Détection de nouveaux domaines protéiques par co-occurence : Application à P. falciparum

Nicolas Terrapon , Olivier Gascuel , Laurent Brehelin

JOBIM 2009 - 10es Journées Ouvertes en Biologie, Informatique et Mathématiques, Jun 2009, Nantes, France. pp.43-48

Communication dans un congrès lirmm-00414954v1
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Recherche de domaines protéiques divergents à l'aide de modèles de Markov cachés : application à Plasmodium falciparum

Nicolas Terrapon

Bio-informatique [q-bio.QM]. Université Montpellier II - Sciences et Techniques du Languedoc, 2010. Français. ⟨NNT : ⟩

Thèse tel-00811835v1