|
|
Snow- and ice-ecosystem cleaning capability of the pucciniomycotinous yeast Phenoliferia psychrophenolica
Jade Ezzedine
,
Pierre Guenzi-Tiberi
,
Gaëlle Villain
,
Riccardo Aiese Cigliano
,
Yacine Diagne
et al.
Article dans une revue
hal-05285714v1
|
|
|
Publisher Correction: A metagenomic ‘dark matter’ enzyme catalyses oxidative cellulose conversion
Clelton Santos
,
Mariana Morais
,
Fernanda Mandelli
,
Evandro Lima
,
Renan Miyamoto
et al.
Article dans une revue
hal-05507999v1
|
|
|
Bacterial polysaccharide lyase family 33: Specificity from an evolutionarily conserved binding tunnel
Mélanie Loiodice
,
Elodie Drula
,
Zak Mciver
,
Svetlana Antonyuk
,
Arnaud Baslé
et al.
Proceedings of the National Academy of Sciences of the United States of America, 2025, 122 (7), pp.e2421623122. ⟨10.1073/pnas.2421623122⟩
Article dans une revue
hal-04968947v1
|
|
|
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Nina Cooper
,
Simon Ladevèze
,
Ao Li
,
Ramteen Shayan
,
Régis Fauré
et al.
Article dans une revue
hal-05377303v1
|
|
|
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Annie Lebreton
,
Marie-Line Garron
,
Marlene Vuillemin
,
Bo Pilgaard
,
Bastian Hornung
et al.
Article dans une revue
hal-05285721v1
|
|
|
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Adam Poláček
,
Vincent Lombard
,
Pedro Coutinho
,
Nicolas Terrapon
,
Štefan Janeček
Article dans une revue
hal-05163099v1
|
|
|
A metagenomic ‘dark matter’ enzyme catalyses oxidative cellulose conversion
Clelton Santos
,
Mariana Morais
,
Fernanda Mandelli
,
Evandro Lima
,
Renan Miyamoto
et al.
Article dans une revue
hal-04948755v1
|
|
|
Glycoside hydrolase–mediated glucomannan catabolism in Segatella copri , a target of microbiota-directed foods for malnourished children
Cyrus Zhou
,
Matthew Hibberd
,
Evan Lee
,
Bo Pilgaard
,
Marlene Vuillemin
et al.
Proceedings of the National Academy of Sciences of the United States of America, 2025, 122 (49), pp.e2521522122. ⟨10.1073/pnas.2521522122⟩
Article dans une revue
hal-05465980v1
|
|
|
Streptomyces castrisilvae sp. nov. and Streptomyces glycanivorans sp. nov., novel soil streptomycetes metabolizing mutan and alternan
Tove Widén
,
Albert Tafur Rangel
,
Vincent Lombard
,
Elodie Drula
,
Scott Mazurkewich
et al.
Article dans une revue
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|
|
|
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Filip Mareček
,
Nicolas Terrapon
,
Štefan Janeček
Article dans une revue
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|
|
|
Prevotella copri and microbiota members mediate the beneficial effects of a therapeutic food for malnutrition
Hao-Wei Chang
,
Evan Lee
,
Yi Wang
,
Cyrus Zhou
,
Kali Pruss
et al.
Article dans une revue
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|
|
|
Unveiling the role of novel carbohydrate‐binding modules in laminarin interaction of multimodular proteins from marine Bacteroidota during phytoplankton blooms
Marie-Katherin Zühlke
,
Elizabeth Ficko-Blean
,
Daniel Bartosik
,
Nicolas Terrapon
,
Alexandra Jeudy
et al.
Article dans une revue
hal-04579759v1
|
|
|
Elizabethkingia anophelis MSU001 Isolated from Anopheles stephensi: Molecular Characterization and Comparative Genome Analysis
Shicheng Chen
,
Steven Pham
,
Nicolas Terrapon
,
Jochen Blom
,
Edward Walker
Article dans une revue
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|
|
|
Evolutionary genomics of the emergence of brown algae as key components of coastal ecosystems
France Denoeud
,
Olivier Godfroy
,
Corinne Cruaud
,
Svenja Heesch
,
Zofia Nehr
et al.
Article dans une revue
hal-04794231v1
|
|
|
A microbiome-directed therapeutic food for children recovering from severe acute malnutrition
Steven Hartman
,
Matthew Hibberd
,
Ishita Mostafa
,
Nurun Naila
,
Md Munirul Islam
et al.
Article dans une revue
hal-04911133v1
|
|
|
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Sadie Schaus
,
Gabriel Vasconcelos Pereira
,
Ana Luis
,
Emily Madlambayan
,
Nicolas Terrapon
et al.
Article dans une revue
hal-04690680v1
|
|
|
In vivo manipulation of human gut Bacteroides fitness by abiotic oligosaccharides
Darryl Wesener
,
Zachary Beller
,
Megan Hill
,
Han Yuan
,
David Belanger
et al.
Article dans une revue
hal-04911123v1
|
|
|
Candidate genes involved in biosynthesis and degradation of the main extracellular matrix polysaccharides of brown algae and their probable evolutionary history
Lisa Mazéas
,
Ahlem Bouguerba-Collin
,
J. Mark Cock
,
France Denoeud
,
Olivier Godfroy
et al.
Article dans une revue
hal-04734202v1
|
|
|
BoGH13ASus from Bacteroides ovatus represents a novel α-amylase used for Bacteroides starch breakdown in the human gut
Haley Brown
,
Anna Deveaux
,
Brock Juliano
,
Amanda Photenhauer
,
Matthieu Boulinguiez
et al.
Article dans une revue
hal-04461076v1
|
|
|
A subfamily classification to choreograph the diverse activities within glycoside hydrolase family 31
Thimali Arumapperuma
,
Jinling Li
,
Bastian Hornung
,
Niccolay Madiedo Soler
,
Ethan Goddard-Borger
et al.
Article dans une revue
hal-04070174v1
|
|
|
Bioactive glycans in a microbiome-directed food for children with malnutrition
Matthew Hibberd
,
Daniel Webber
,
Dmitry Rodionov
,
Suzanne Henrissat
,
Robert Chen
et al.
Article dans une revue
hal-04472779v1
|
|
|
Inducible CRISPR-targeted “knockdown” of human gut Bacteroides in gnotobiotic mice discloses glycan utilization strategies
Zachary Beller
,
Darryl Wesener
,
Timothy Seebeck
,
Janaki Guruge
,
Alexandra Byrne
et al.
Proceedings of the National Academy of Sciences of the United States of America, 2023, 120 (39), pp.e2311422120. ⟨10.1073/pnas.2311422120⟩
Article dans une revue
hal-04472785v1
|
|
|
Taxonomic composition and carbohydrate-active enzyme content in microbial enrichments from pulp mill anaerobic granules after cultivation on lignocellulosic substrates
Mabel T Wong
,
Camilla L Nesbø
,
Weijun Wang
,
Marie Couturier
,
Vincent Lombard
et al.
Article dans une revue
(data paper)
hal-04681775v1
|
|
|
Hadza Prevotella require diet-derived microbiota-accessible carbohydrates to persist in mice
Rebecca Gellman
,
Matthew Olm
,
Nicolas Terrapon
,
Fatima Enam
,
Steven Higginbottom
et al.
Article dans une revue
hal-04461077v1
|
|
|
An objective criterion to evaluate sequence-similarity networks helps in dividing the protein family sequence space
Bastian Volker Helmut Hornung
,
Nicolas Terrapon
Article dans une revue
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|
|
|
The carbohydrate-active enzyme database: functions and literature
Elodie Drula
,
Marie-Line Garron
,
Suzan Dogan
,
Vincent Lombard
,
Bernard Henrissat
et al.
Article dans une revue
hal-03588994v1
|
|
|
Glycoside hydrolase subfamily GH5_57 features a highly redesigned catalytic interface to process complex hetero-β-mannans
Marcele Martins
,
Mariana Morais
,
Gabriela Persinoti
,
Rafael Galinari
,
Li Yu
et al.
Article dans une revue
hal-03982004v1
|
|
|
Phenotypic and Genomic Diversification in Complex Carbohydrate-Degrading Human Gut Bacteria
Nicholas Pudlo
,
Karthik Urs
,
Ryan Crawford
,
Ali Pirani
,
Todd Atherly
et al.
Article dans une revue
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|
|
|
Functional exploration of the glycoside hydrolase family GH113
Marie Couturier
,
Mélanie Touvrey-Loiodice
,
Nicolas Terrapon
,
Elodie Drula
,
Laurine Buon
et al.
Article dans une revue
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|
|
|
Gut microbiome of the largest living rodent harbors unprecedented enzymatic systems to degrade plant polysaccharides
Lucelia Cabral
,
Gabriela Persinoti
,
Douglas Paixão
,
Marcele Martins
,
Mariana Morais
et al.
Article dans une revue
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|
|
|
Assembly and synthesis of the extracellular matrix in brown algae
Lisa Mazéas
,
Rina Yonamine
,
Tristan Barbeyron
,
Bernard Henrissat
,
Elodie Drula
et al.
Article dans une revue
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|
|
|
Microbial liberation of N-methylserotonin from orange fiber in gnotobiotic mice and humans
Nathan Han
,
Jiye Cheng
,
Omar Delannoy-Bruno
,
Daniel Webber
,
Nicolas Terrapon
et al.
Article dans une revue
hal-03821289v1
|
|
|
Strain-level functional variation in the human gut microbiota based on bacterial binding to artificial food particles
Michael Patnode
,
Janaki Guruge
,
Juan Castillo
,
Garret Couture
,
Vincent Lombard
et al.
Article dans une revue
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|
|
|
Bioinformatic Analysis of Lytic Polysaccharide Monooxygenases Reveals the Pan-Families Occurrence of Intrinsically Disordered C-Terminal Extensions
Ketty C Tamburrini
,
Nicolas Terrapon
,
Vincent Lombard
,
Bastien Bissaro
,
Sonia Longhi
et al.
Article dans une revue
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|
|
|
Polysaccharide utilization loci-driven enzyme discovery reveals BD-FAE: a bifunctional feruloyl and acetyl xylan esterase active on complex natural xylans
Lisanne Hameleers
,
Leena Penttinen
,
Martina Ikonen
,
Léa Jaillot
,
Régis Fauré
et al.
Article dans une revue
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|
|
|
Genome Features of Asaia sp. W12 Isolated from the Mosquito Anopheles stephensi Reveal Symbiotic Traits
Shicheng Chen
,
Ting Yu
,
Nicolas Terrapon
,
Bernard Henrissat
,
Edward D Walker
Article dans une revue
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|
|
|
Metabolism of multiple glycosaminoglycans by Bacteroides thetaiotaomicron is orchestrated by a versatile core genetic locus
Didier Ndeh
,
Arnaud Baslé
,
Henrik Strahl
,
Urszula Mcclurgg
,
Bernard Henrissat
et al.
Article dans une revue
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|
|
|
Investigating host-microbiome interactions by droplet based microfluidics
Alexandra S Tauzin
,
Mariana Rangel Pereira
,
Liisa D van Vliet
,
Pierre-Yves Colin
,
Elisabeth Laville
et al.
Article dans une revue
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|
|
|
A catalog of microbial genes from the bovine rumen unveils a specialized and diverse biomass-degrading environment
Junhua Li
,
Huanzi Zhong
,
Yuliaxis Y. Ramayo-Caldas
,
Nicolas Terrapon
,
Vincent Lombard
et al.
Article dans une revue
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|
|
|
Analysis of the diversity of the glycoside hydrolase family 130 in mammal gut microbiomes reveals a novel mannoside-phosphorylase function
Ao Li
,
Elisabeth Laville
,
Laurence Tarquis
,
Vincent Lombard
,
David Ropartz
et al.
Article dans une revue
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|
|
|
Microbiota-directed fibre activates both targeted and secondary metabolic shifts in the distal gut
Leszek Michalak
,
John Christian Gaby
,
Leidy Lagos
,
Sabina Leanti La Rosa
,
Torgeir Hvidsten
et al.
Article dans une revue
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|
|
|
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Zhi Wang
,
Alexandra S. Tauzin
,
Elisabeth Laville
,
Pietro Tedesco
,
Fabien Letisse
et al.
Article dans une revue
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|
|
|
Isolation and Characterization of Extracellular Vesicles Secreted In Vitro by Porcine Microbiota
Leidy Lagos
,
Sabina Leanti La Rosa
,
Magnus Ø. Arntzen
,
Ragnhild Ånestad
,
Nicolas Terrapon
et al.
Article dans une revue
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|
|
|
Discovery of novel carbohydrate-active enzymes through the rational exploration of the protein sequences space
William Helbert
,
Laurent Poulet
,
Sophie Drouillard
,
Sophie Mathieu
,
Mélanie Loiodice
et al.
Proceedings of the National Academy of Sciences of the United States of America, 2019, 116 (13), pp.6063-6068. ⟨10.1073/pnas.1815791116⟩
Article dans une revue
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|
|
|
Bacteroidetes use thousands of enzyme combinations to break down glycans
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,
Vincent Lombard
,
Elodie Drula
,
Nicolas Terrapon
,
Bernard Henrissat
Article dans une revue
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|
|
|
A subfamily roadmap for functional glycogenomics of the evolutionarily diverse Glycoside Hydrolase Family 16 (GH16)
Alexander Holm Viborg
,
Nicolas Terrapon
,
Vincent Lombard
,
Gurvan Michel
,
Mirjam Czjzek
et al.
Article dans une revue
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|
|
|
Comparative genomic analyses reveal diverse virulence factors and antimicrobial resistance mechanisms in clinical Elizabethkingia meningoseptica strains
Jochen Blom
,
Nicolas Terrapon
,
Shicheng Chen
,
Marty Soehnlen
,
Jochen Blom Id
et al.
Article dans une revue
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|
|
|
Interspecies Competition Impacts Targeted Manipulation of Human Gut Bacteria by Fiber-Derived Glycans
Michael Patnode
,
Zachary Beller
,
Nathan Han
,
Jiye Cheng
,
Samantha Peters
et al.
Article dans une revue
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|
|
|
PULDB: the expanded database of Polysaccharide Utilization Loci
Nicolas Terrapon
,
Vincent Lombard
,
Elodie Drula
,
Pascal Lapébie
,
Saad Al-Masaudi
et al.
Article dans une revue
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|
|
|
Cultivation and sequencing of rumen microbiome members from the Hungate1000 Collection
Rekha Seshadri
,
Sinead Leahy
,
Graeme Attwood
,
Koon Hoong Teh
,
Suzanne Lambie
et al.
Article dans une revue
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|
|
|
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Ana R Luis
,
Jonathon Briggs
,
Xiaoyang Zhang
,
Benjamin Farnell
,
Didier Ndeh
et al.
Article dans une revue
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|
|
|
A surface endogalactanase in Bacteroides thetaiotaomicron confers keystone status for arabinogalactan degradation
Alan Cartmell
,
Li Muñoz-Muñoz
,
Jonathon Briggs
,
Didier Ndeh
,
Elisabeth Lowe
et al.
Article dans une revue
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|
|
|
Unusual active site location and catalytic apparatus in a glycoside hydrolase family
Jose Munoz-Munoz
,
Alan Cartmell
,
Nicolas Terrapon
,
Bernard Henrissat
,
Harry J. Gilbert
Proceedings of the National Academy of Sciences of the United States of America, 2017, 114 (19), pp.4936-4941. ⟨10.1073/pnas.1701130114⟩
Article dans une revue
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|
|
|
Complex pectin metabolism by gut bacteria reveals novel catalytic functions
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,
Artur Rogowski
,
Alan Cartmell
,
Ana S. Luis
,
Arnaud Basle
et al.
Article dans une revue
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|
|
|
An evolutionarily distinct family of polysaccharide lyases removes rhamnose capping of complex arabinogalactan proteins
Jose Munoz-Munoz
,
Alan Cartmell
,
Nicolas Terrapon
,
Arnaud Basle
,
Bernard Henrissat
et al.
Article dans une revue
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|
|
|
A bioinformatics analysis of 3400 lytic polysaccharide oxidases from family AA9
Nicolas Lenfant
,
Matthieu Hainaut
,
Nicolas Terrapon
,
Elodie Drula
,
Vincent Lombard
et al.
Article dans une revue
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|
|
|
A fibrolytic potential in the human ileum mucosal microbiota revealed by functional metagenomic
Orlane Patrascu
,
Fabienne Beguet-Crespel
,
Ludovica Marinelli
,
Emmanuelle Le Chatelier
,
Anne-Laure Abraham
et al.
Article dans une revue
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|
|
|
Comparative Metagenomics of Cellulose- and Poplar Hydrolysate-Degrading Microcosms from Gut Microflora of the Canadian Beaver (Castor canadensis) and North American Moose (Alces americanus) after Long-Term Enrichment
Mabel Wong
,
Weijun Wang
,
Marie Couturier
,
Fakhria Razeq
,
Vincent Lombard
et al.
Article dans une revue
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|
|
|
Ninety-nine de novo assembled genomes from the moose (Alces alces) rumen microbiome provide new insights into microbial plant biomass degradation
Olov Svartström
,
Johannes Alneberg
,
Nicolas Terrapon
,
Vincent Lombard
,
Ino de Bruijn
et al.
Article dans une revue
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|
|
|
How members of the human gut microbiota overcome the sulfation problem posed by glycosaminoglycans
Alan Cartmell
,
Elisabeth Lowe
,
Arnaud Basle
,
Susan Firbank
,
Didier Ndeh
et al.
Proceedings of the National Academy of Sciences of the United States of America, 2017, 114 (27), pp.7037-7042. ⟨10.1073/pnas.1704367114⟩
Article dans une revue
hal-01802836v1
|
|
|
A Dietary Fiber-Deprived Gut Microbiota Degrades the Colonic Mucus Barrier and Enhances Pathogen Susceptibility
Mahesh S. Desai
,
Anna M. Seekatz
,
Nicole M. Koropatkin
,
Nobuhiko Kamada
,
Christina A. Hickey
et al.
Article dans une revue
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|
|
|
Unraveling the pectinolytic function of Bacteroides xylanisolvens using a RNA-seq approach and mutagenesis
Jordane Despres
,
Evelyne Forano
,
Pascale Lepercq
,
Sophie Comtet-Marre
,
Grégory Jubelin
et al.
Article dans une revue
hal-01439085v1
|
|
|
Xylan degradation by the human gut Bacteroides xylanisolvens XB1A(T) involves two distinct gene clusters that are linked at the transcriptional level
Jordane Despres
,
Evelyne Forano
,
Pascale Lepercq
,
Sophie Comtet-Marre
,
Grégory Jubelin
et al.
Article dans une revue
hal-01439065v1
|
|
|
Unraveling the pectinolytic function of Bacteroides xylanisolvens using a RNA-seq approach and mutagenesis
Jordane Despres
,
Evelyne Forano
,
Pascale Lepercq
,
Sophie Comtet-Marre
,
Grégory Jubelin
et al.
Article dans une revue
hal-01439068v1
|
|
|
Glycan complexity dictates microbial resource allocation in the large intestine
Artur Rogowski
,
Jonathon A. Briggs
,
Jennifer C. Mortimer
,
Theodora Tryfona
,
Nicolas Terrapon
et al.
Article dans une revue
hal-01439017v1
|
|
|
Automatic prediction of polysaccharide utilization loci in Bacteroidetes species
Nicolas Terrapon
,
Vincent Lombard
,
Harry J. Gilbert
,
Bernard Henrissat
Article dans une revue
hal-01438994v1
|
|
|
Genetic determinants of in vivo fitness and diet responsiveness in multiple human gut Bacteroides
Meng Wu
,
Nathan P. Mcnulty
,
Dmitry A. Rodionov
,
Matvei S. Khoroshkin
,
Nicholas W. Griffin
et al.
Article dans une revue
hal-01439023v1
|
|
|
How do gut microbes break down dietary fiber?
Nicolas Terrapon
,
Bernard Henrissat
Article dans une revue
hal-05042026v1
|
|
|
Identification of divergent protein domains by combining HMM-HMM comparisons and co-occurrence detection
Amel Ghouila
,
Isabelle Florent
,
Fatma Zahra Guerfali
,
Nicolas Terrapon
,
Dhafer Laouini
et al.
Article dans une revue
pasteur-01060276v1
|
|
|
Fitting hidden Markov models of protein domains to a target species: application to Plasmodium falciparum.
Nicolas Terrapon
,
Olivier Gascuel
,
Eric Marechal
,
Laurent Brehelin
Article dans une revue
hal-00701611v1
|
|
|
EuPathDomains: The Divergent Domain Database for Eukaryotic Pathogens
Amel Ghouila
,
Nicolas Terrapon
,
Olivier Gascuel
,
Fatma Guerfali
,
Dhafer Laouini
et al.
Article dans une revue
istex
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|
|
|
Detection of new protein domains using co-occurrence: application to Plasmodium falciparum
Nicolas Terrapon
,
Olivier Gascuel
,
Eric Maréchal
,
Laurent Brehelin
Article dans une revue
lirmm-00431171v1
|