Géraldine Pascal

120
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Présentation

Bioinformatics - Comparative Genomics & Metagenomics

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Publications

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Building a reliable 16S mini-barcode library of wild bees from Occitania, south-west of France

Anaïs Marquisseau , Kamila Canale-Tabet , Emmanuelle Labarthe , Géraldine Pascal , Christophe Klopp et al.
Biodiversity Data Journal, 2025, 13, pp.e137540. ⟨10.5883/DS-BCWBS16S⟩
Article dans une revue hal-04877671 v1
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Milk replacer feeding once or twice a day did not change the ruminal metabolomic profile and the microbial diversity of dairy calves from birth to weaning

A. Zened , C. Julien , L. Cauquil , Géraldine Pascal , C. Canlet et al.
Journal of Dairy Science, 2024, 107 (8), pp.5574-5586. ⟨10.3168/jds.2023-24327⟩
Article dans une revue hal-04667561 v1
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A pile of pipelines: An overview of the bioinformatics software for metabarcoding data analyses

Ali Hakimzadeh , Alejandro Abdala Asbun , Davide Albanese , Maria Bernard , Dominik Buchner et al.
Molecular Ecology Resources, 2024, 24 (5), ⟨10.1111/1755-0998.13847⟩
Article dans une revue hal-04183770 v1
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A multi-omics dataset of the response to early plant polysaccharide ingestion in rabbits

Charlotte Paës , Martin Beaumont , Thierry Gidenne , Karine Bébin , Joël Duperray et al.
Scientific Data , 2024, 11 (1), pp.684. ⟨10.1038/s41597-024-03471-1⟩
Article dans une revue hal-04634098 v1
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Relationship between feed efficiency and gut microbiota in laying chickens under contrasting feeding conditions

Maria Bernard , Alexandre Lecoeur , Jean-Luc Coville , Nicolas Bruneau , Deborah Jardet et al.
Scientific Reports, 2024, 14 (1), pp.8210. ⟨10.1038/s41598-024-58374-3⟩
Article dans une revue hal-04538081 v1
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A large database linking the rumen bacterial composition and milk traits in Lacaune sheep

Guillermo Martinez Boggio , Christel Marie-Etancelin , Jean-Marie Menras , Regis Tomas , Marie-Luce Chemit et al.
Scientific Data , 2023, 10 (1), pp.17. ⟨10.1038/S41597-022-01912-3⟩
Article dans une revue (data paper) hal-03933175 v1
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A carvacrol‐based product reduces Campylobacter jejuni load and alters microbiota composition in the caeca of chickens

Marion Allaoua , Elsa Bonnafé , Pierre Etienne , Virginie Noirot , Jean‐françois Gabarrou et al.
Journal of Applied Microbiology, 2022, 132 (6), pp.4501-4516. ⟨10.1111/jam.15521⟩
Article dans une revue hal-03607325 v1
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Early Introduction of Plant Polysaccharides Drives the Establishment of Rabbit Gut Bacterial Ecosystems and the Acquisition of Microbial Functions

Charlotte Paës , Thierry Gidenne , Karine Bébin , Joël Duperray , Charly Gohier et al.
mSystems, 2022, 18 p. ⟨10.1128/msystems.00243-22⟩
Article dans une revue hal-03699002 v1
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Apart From the Diet, the Ruminal Microbiota of Lambs Is Modified in Relation to Their Genetic Potential for Feed Efficiency or Feeding Behavior

Christel Marie-Etancelin , Flavie Tortereau , Beatrice Gabinaud , Guillermo Martinez Boggio , Quentin Le Graverand et al.
Frontiers in Microbiology, 2021, 12 (7), 15 p. ⟨10.3389/fmicb.2021.759432⟩
Article dans une revue hal-03480852 v1
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FROGS: a powerful tool to analyse the diversity of fungi with special management of internal transcribed spacers

Maria Bernard , Olivier Rué , Mahendra Mariadassou , Géraldine Pascal
Briefings in Bioinformatics, 2021, 22 (6), ⟨10.1093/bib/bbab318⟩
Article dans une revue hal-03323846 v1

Gut Microbiota-Derived Metabolite Signature in Suckling and Weaned Piglets

Martin Beaumont , Laurent Cauquil , Allan Bertide , Ingrid Ahn , Céline Barilly et al.
Journal of Proteome Research, 2021, 20 (1), pp.982-994. ⟨10.1021/acs.jproteome.0c00745⟩
Article dans une revue hal-03087209 v1
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The intestinal microbial composition in Greylag geese differs with steatosis induction mode: spontaneous or induced by overfeeding

Christelle Knudsen , Julien Arroyo , Maxime Even , Laurent Cauquil , Géraldine Pascal et al.
Animal Microbiome, 2021, 3 (1), ⟨10.1186/s42523-020-00067-z⟩
Article dans une revue hal-03109374 v1
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Culture of rabbit caecum organoids by reconstituting the intestinal stem cell niche in vitro with pharmacological inhibitors or L-WRN conditioned medium

Eloïse Mussard , Cécile Pouzet , Virginie Helies , Géraldine Pascal , Sandra Fourre et al.
Stem Cell Research, 2020, 48, pp.1-10. ⟨10.1016/j.scr.2020.101980⟩
Article dans une revue hal-02983697 v1
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Dietary composition and yeast-microalgae combination supplementation modulate the microbial ecosystem in the caecum, colon and faeces of horses

Pauline Grimm , Sylvie Combes , Géraldine Pascal , Laurent Cauquil , Véronique Julliand
British Journal of Nutrition, 2020, 123 (4), pp.372-382. ⟨10.1017/S0007114519002824⟩
Article dans une revue hal-02381031 v1
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The MACADAM database: a MetAboliC pAthways DAtabase for Microbial taxonomic groups for mining potential metabolic capacities of archaeal and bacterial taxonomic groups

Malo Le Boulch , Patrice Dehais , Sylvie Combes , Géraldine Pascal
Database - The journal of Biological Databases and Curation, 2019, 2019, pp.1-14. ⟨10.1093/database/baz049⟩
Article dans une revue hal-02276653 v1
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Diversity and Co-occurrence Pattern Analysis of Cecal Microbiota Establishment at the Onset of Solid Feeding in Young Rabbits

Tehya Read , Laurence Fortun-Lamothe , Géraldine Pascal , Malo Le Boulch , Laurent Cauquil et al.
Frontiers in Microbiology, 2019, 10, Non paginé. ⟨10.3389/fmicb.2019.00973⟩
Article dans une revue hal-02154596 v1
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Guide pratique à destination des biologistes, bioinformaticiens et statisticiens qui souhaitent s’initier aux analyses métabarcoding

Hélène Falentin , Lucas Auer , Mahendra Mariadassou , Géraldine Pascal , Olivier Rué et al.
Cahier des Techniques de l'INRA, 2019, 97, pp.46-69
Article dans une revue (article de synthèse) hal-02311421 v1
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Probiotics Strains Modulate Gut Microbiota and Lipid Metabolism in Mule Ducks

Maxime Even , Stéphane Davail , Mikael Rey , Annabelle Tavernier , Marianne Houssier et al.
Open Microbiology Journal, 2018, 12 (1), pp.71-93. ⟨10.2174/1874285801812010071⟩
Article dans une revue hal-01901329 v1
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Fumonisin-Exposure Impairs Age-Related Ecological Succession of Bacterial Species in Weaned Pig Gut Microbiota

Ivan Mateos , Sylvie Combes , Géraldine Pascal , Laurent Cauquil , Céline Barilly et al.
Toxins, 2018, 10 (6), pp.230. ⟨10.3390/toxins10060230⟩
Article dans une revue hal-01829232 v1
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FROGS: Find, Rapidly, OTUs with Galaxy Solution

Frédéric Escudié , Lucas Auer , Maria Bernard , Mahendra Mariadassou , Laurent Cauquil et al.
Bioinformatics, 2018, 34 (8), pp.1287-1294. ⟨10.1093/bioinformatics/btx791⟩
Article dans une revue hal-02626808 v1
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Impact of feed restriction and housing hygiene conditions on specific and inflammatory immune response, the cecal bacterial community and the survival of young rabbits

Sylvie Combes , Katia Julian , Océane Martin , Hauteclaire Furbeyre , Laurent Cauquil et al.
Animal, 2017, 11 (5), pp.854-863. ⟨10.1017/S1751731116002007⟩
Article dans une revue hal-01605508 v1
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Phylogenesis and biological characterization of a new glucose transporter in the chicken (Gallus gallus), GLUT12

Edouard Coudert , Géraldine Pascal , Joëlle Dupont , Jean Simon , Estelle Audouin et al.
PLoS ONE, 2015, 10 (10), pp.1-18. ⟨10.1371/journal.pone.0139517⟩
Article dans une revue hal-01594233 v1
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Evolutionary origin of Bone Morphogenetic Protein 15 and growth and differentiation factor 9 and differential selective pressure between mono- and polyovulating species

Olivier Monestier , Bertrand Servin , Sylvain Auclair , Thomas Bourquard , Anne Poupon et al.
Biology of Reproduction, 2014, 91 (4), pp.1-13. ⟨10.1095/biolreprod.114.119735⟩
Article dans une revue hal-01129871 v1
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Positive selection in bone morphogenetic protein 15 targets a natural mutation associated with primary ovarian insufficiency in human

Sylvain Auclair , Raffaella Rossetti , Camille Meslin , Olivier Monestier , Elisa Di Pasquale et al.
PLoS ONE, 2013, 8, online (10), Non paginé. ⟨10.1371/journal.pone.0078199⟩
Article dans une revue hal-01129774 v1
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Structural and functional annotation of the porcine immunome

Harry D Dawson , Jane E Loveland , Géraldine Pascal , James G R Gilbert , Hirohide Uenishi et al.
BMC Genomics, 2013, 14, online (may), Non paginé. ⟨10.1186/1471-2164-14-332⟩
Article dans une revue hal-01019897 v1

Deleted in malignant brain tumor 1 is secreted in the oviduct and involved in the mechanism of fertilization in equine and porcine species

Barbara Ambruosi , Gianluca Accogli , Cécile Lahuec , Sylvie Canepa , Géraldine Pascal et al.
Reproduction [Cambridge], 2013, 146 (2), pp.119-133. ⟨10.1530/REP-13-0007⟩
Article dans une revue hal-01129750 v1

Analyses of pig genomes provide insight into porcine demography and evolution

Martien A. M. Groenen , Alan L. Archibald , Hirohide Uenishi , Christopher K. Tuggle , Yasuhiro Takeuchi et al.
Nature, 2012, 491 (7426), pp.393-398. ⟨10.1038/nature11622⟩
Article dans une revue cea-00880676 v1

An oocyte-preferential histone mRNA stem-loop-binding protein like is expressed in several mammalian species

Aurore Thelie , Géraldine Pascal , Leslie Angulo , Christine Perreau , Pascal Papillier et al.
Molecular Reproduction and Development, 2012, 79 (6), pp.380-391. ⟨10.1002/mrd.22040⟩
Article dans une revue istex hal-01129625 v1
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Evolution of genes involved in gamete interaction: Evidence for positive selection, duplications and losses in vertebrates

Camille Meslin , Sylvie Mugnier , Isabelle Callebaut , Michel Laurin , Géraldine Pascal et al.
PLoS ONE, 2012, 7 (9), pp.1-8. ⟨10.1371/journal.pone.0044548⟩
Article dans une revue hal-01136282 v1
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The evolutionary history of the SAL1 gene family in eutherian mammals

Camille Meslin , Fanny Brimau , Patricia Nagnan-Le Meillour , I. Callebaut , Géraldine Pascal et al.
BMC Evolutionary Biology, 2011, 11 (148), pp.1-14. ⟨10.1186/1471-2148-11-148⟩
Article dans une revue hal-02652257 v1

Ovocalyxin-36 and other LBP/BPI/PLUNC-like proteins as molecular actors of the mechanisms of the avian egg natural defences

Joël Gautron , Sophie Réhault-Godbert , Géraldine Pascal , Yves Nys , M.T. Hincke
Biochemical Society Transactions, 2011, 39 (4), pp.971-976. ⟨10.1042/BST0390971⟩
Article dans une revue (article de synthèse) hal-01129577 v1
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PhyleasProg: a user-oriented web server for wide evolutionary analyses

Joël Busset , Cédric Cabau , Camille Meslin , Géraldine Pascal
Nucleic Acids Research, 2011, 39 (Web Server issue), pp.W479-W485. ⟨10.1093/nar/gkr243⟩
Article dans une revue hal-01129520 v1

ICEEc2, a new integrative and conjugative element belonging to the pKLC102/PAGI-2 family, identified in Escherichia coli strain BEN374

D. Roche , Maud Flechard , Nathalie Lallier , Maryline Ferter , Annie Brée et al.
Journal of Bacteriology, 2010, 192 (19), pp.5026-5036. ⟨10.1128/JB.00609-10⟩
Article dans une revue hal-01129464 v1

What makes an egg unique? Clues from evolutionary scenarios of egg-specific genes

X. Tian , Joël Gautron , Philippe Monget , Géraldine Pascal
Biology of Reproduction, 2010, 83 (6), pp.893-900. ⟨10.1095/biolreprod.110.085019⟩
Article dans une revue (article de synthèse) hal-01129421 v1
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Gene birth, death, and divergence: the different scenarios of reproduction-related gene evolution.

Xin Tian , Géraldine Pascal , Sophie Fouchécourt , Pierre Pontarotti , Philippe Monget
Biology of Reproduction, 2009, 80 (4), pp.616-21. ⟨10.1095/biolreprod.108.073684⟩
Article dans une revue (article de synthèse) hal-00831221 v1
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Evolution and functional divergence of NLRP genes in mammalian reproductive systems

Xin Tian , Géraldine Pascal , Philippe Monget
BMC Evolutionary Biology, 2009, 9:202, pp.1-13. ⟨10.1186/1471-2148-9-202⟩
Article dans une revue hal-02664172 v1
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The secretions of oviduct epithelial cells increase the equine in vitro fertilization rate: are osteopontin, atrial natriuretic peptide A and oviductin involved?

Sylvie Mugnier , Morgane Kervella , Cécile Douet , Sylvie Canepa , Géraldine Pascal et al.
Reproductive Biology and Endocrinology, 2009, 7, pp.1-16. ⟨10.1186/1477-7827-7-129⟩
Article dans une revue hal-02661859 v1

Genome sequence of the -rhizobium Cupriavidus taiwanensis and comparative genomics of rhizobia

Claire Amadou , Géraldine Pascal , Sophie Mangenot , Michelle Glew , Cyril Bontemps et al.
Genome Research, 2008, 18 (9), pp.1472 - 1483. ⟨10.1101/gr.076448.108⟩
Article dans une revue hal-01655676 v1

Proteome analysis of the phenotypic variation process inPhotorhabdus luminescens

Evelyne Turlin , Géraldine Pascal , Jean-Claude Rousselle , Pascal Lenormand , Saravuth Ngo et al.
Proteomics, 2006, 6 (9), pp.2705-2725. ⟨10.1002/PMIC.200500646⟩
Article dans une revue istex hal-02985560 v1

Persistent biases in the amino acid composition of prokaryotic proteins

Géraldine Pascal , Claudine Médigue , Antoine Danchin
BioEssays, 2006, 28 (7), pp.726-738. ⟨10.1002/BIES.20431⟩
Article dans une revue istex hal-02985564 v1

Universal biases in protein composition of model prokaryotes

Géraldine Pascal , Claudine Médigue , Antoine Danchin
Proteins - Structure, Function and Bioinformatics, 2005, 60 (1), pp.27-35. ⟨10.1002/PROT.20475⟩
Article dans une revue istex hal-02985536 v1

Exploring the Penicillium marneffei genome

Kwok-Yung Yuen , Géraldine Pascal , Samson Wong , Philippe Glaser , Patrick Woo et al.
Archives of Microbiology, 2003, 179 (5), pp.339-353. ⟨10.1007/S00203-003-0533-8⟩
Article dans une revue istex hal-02985518 v1
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CORE GUT MICROBIOTA IN RABBIT: OPPORTUNITIES TO STRENGTHEN THE INTESTINAL BARRIER

Sylvie Combes , Laurent Cauquil , Mathilde Rumeau , Charlotte Paës , Géraldine Pascal et al.
13th World Rabbit Congress, WRSA, Oct 2024, Tarragona, Spain, Spain. pp.BP24-BP48
Communication dans un congrès hal-04754818 v1
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Fecal microbiota shifts during transition in dairy cows

Lisa Arnalot , Salomé Ducluzeau , Marion Julhes , Laurent Cauquil , Géraldine Pascal et al.
Séminaire HOLO-AE (Holobiontes des Animaux d’Elevage), INRAE métaprogramme HOLOFLUX, Dec 2024, Paris, France
Communication dans un congrès hal-04872729 v1

News about FROGS

Olivier Rué , Lucas Auer , Gabryelle Agoutin , Maria Bernard , Géraldine Pascal
PEPI IBIS, Nov 2024, Visio Conférence, France
Communication dans un congrès hal-04786277 v1

A richer gut microbiota is related to better feed efficiency and diet adaptability in laying hens

Maria Bernard , Alexandre Lecoeur , Jean-Luc Coville , Nicolas Bruneau , Deborah Jardet et al.
74. Annual meeting of the european federation of animal science (EAAP), EAAP, Aug 2023, Lyon, France. pp.740
Communication dans un congrès hal-04199104 v1

metagWGS : a workflow to analyse short or long HiFi metagenomic reads

Joanna Fourquet , Maïna Vienne , Jean Mainguy , Vincent Darbot , Pierre Martin et al.
Bioinfo Biosta Genotoul day, Dec 2022, Castanet Tolosan, France
Communication dans un congrès hal-03944382 v1
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The benefits of long read HiFi sequencing for metabarcoding analysis

Adrien Castinel , Jean Mainguy , Sylvie Combes , Carole Iampietro , Christine Gaspin et al.
PACBIO DISCOVERIES ROADSHOW PARIS, PACBIO, May 2022, Paris, France
Communication dans un congrès hal-03740586 v1
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The benefits of long read HiFi sequencing for metagenomic analysis

Adrien Castinel , Jean Mainguy , Sylvie Combes , Carole Iampietro , Christine Gaspin et al.
France génomique - VIIème Animation Wetlab et Bioinfo, Nov 2022, Strasbourg, France
Communication dans un congrès hal-03896074 v1
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Both quantitative and energetic intake level affect caecal microbiota composition and activity in the growing rabbit

Christelle Knudsen , Thierry Gidenne , Laurent Cauquil , Géraldine Pascal , Christophe Briens et al.
12th World Rabbit Congress, Nov 2021, Nantes, France
Communication dans un congrès hal-03649231 v1
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Stimuler l'ingestion d'aliments solides au début de la vie : une stratégie prometteuse pour piloter la co-maturation du microbiote et de la muqueuse intestinale

Martin Beaumont , Charlotte Paes , Eloïse Mussard , Laurence Lamothe , Thierry Gidenne et al.
Séminaire Défis Scientifiques, Département de Physiologie Animale et Systèmes d’Elevage, Nov 2019, Rennes, France
Communication dans un congrès hal-02884240 v1

The journey of a team of engineers in learning packaging technology

Laure Quintric , Patrick Durand , Olivier Inizan , Valentin Marcon , Caroline Dussart et al.
Galaxy Community Conference - GCC2018, Jun 2018, Portland, United States
Communication dans un congrès hal-02784992 v1

Microbiota as a tool to promote spontaneous liver steatosis in Greylag geese: promising results

Christelle Knudsen , Maxime Even , Julien Arroyo , Sylvie Combes , Laurent Cauquil et al.
69. Annual Meeting of the European Federation of Animal Science (EAAP), Aug 2018, Dubrovnik, Croatia
Communication dans un congrès hal-01901325 v1
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MACADAM a user-friendly MetAboliC pAthway DAtabase for complex Microbial community function analysis

Malo Le Boulch , Patrice Dehais , Sylvie Combes , Géraldine Pascal
Jobim (Journées Ouvertes Biologie Informatique Mathématiques), Jul 2018, Marseille, France
Communication dans un congrès hal-02789596 v1
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Genetic determinism of dairy sheep ruminal microbiota

Christel Marie-Etancelin , Beatrice Gabinaud , Géraldine Pascal , Regis Tomas , Jean Marie Menras et al.
69. Annual Meeting of the European Federation of Animal Science (EAAP), Aug 2018, Dubrovnik, Croatia. 705 p
Communication dans un congrès hal-02737262 v1

Microbial metacommunity: a METABAR coding approach

Marc Buée , Matthieu Barret , Maria Bernard , Didier Debroas , Isabelle Domaizon et al.
2017 Scientific MEM days: Journées scientifiques MEM (Métaomiques et écosystèmes microbiens), Jan 2017, Paris, France
Communication dans un congrès hal-01607836 v1
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Effect of feeding strategy on the maturation of ceacal microbiota in young rabbits

Tehya Read , Laurence Fortun-Lamothe , Thierry Gidenne , N. Destombes , Laurent Cauquil et al.
11. World Rabbit Congress, Jun 2016, Qingdao, China. 417 p
Communication dans un congrès hal-02739131 v1

Find Rapidly OTU with Galaxy Solution

Frédéric Escudie , Lucas Auer , Maria Bernard , Laurent Cauquil , Katia Vidal et al.
JOBIM 2015 - Journées Ouvertes Biologie Informatique Mathématiques, Jul 2015, Clermont-Ferrand, France
Communication dans un congrès hal-01535378 v1
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Modulation de la composition l'écosystème digestif caecal du lapereau par voie alimentaire et relation avec son fonctionnement

Vincent Jacquier , Sylvie Combes , Géraldine Pascal , Laurent Cauquil , Beatrice Gabinaud et al.
16. Journées de la Recherche Cunicole, Nov 2015, Le Mans, France. 264 p
Communication dans un congrès hal-02742208 v1

Implantation du microbiote intestinal dans l'iléon et les ceca des canetons Barbarie, Pékin et Mulard par séquençage miseQ

Mickael Rey , Karine Ricaud , Marie-Dominique M.-D. Bernadet , Géraldine Pascal , Sylvie Combes et al.
11. Journées de la Recherche Avicole et des Palmipèdes à Foie Gras, Mar 2015, Tours, France
Communication dans un congrès hal-02739751 v1

Rôle des cellules d'oviducte dans la fécondation équine et identification des protéines impliquées

Barbara Ambruosi , Sylvie Mugnier , Cécile Douet , Géraldine Pascal , Guy Duchamp et al.
38. Journée de la Recherche Equine, Institut Français du Cheval et de l'Equitation (IFCE). Labo/service de l'auteur, Le Pin, FRA., Mar 2012, Paris, France. 232 p
Communication dans un congrès hal-02748627 v1

Etude des mécanismes de la fécondation dans l'espèce équine par une approche comparative entre les modèles équin et porcin.

Sylvie Mugnier , Stéphane Boittin , Sylvie Canepa , Bernadette Delaleu , Cécile Douet et al.
36. Journée de la Recherche Equine, Mar 2010, Paris, France
Communication dans un congrès hal-02752835 v1

Identification et rôle fonctionnel des acides aminés sous sélection positive des Odorant Binding Proteins: implication dans la spéciation

Camille Meslin , Fanny Brimau , A Leroy , Géraldine Pascal , Patricia Nagnan-Le Meillour et al.
Journées d’Animation des Crédits Incitatifs du Département de Physiologie Animale et Systèmes d’Elevage (JACI Phase), 2010, Tours, France
Communication dans un congrès hal-01607662 v1
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Structure-dependent degradation of milk oligosaccharides by newly isolated intestinal commensal bacterial strains from suckling piglets and rabbits

Mathilde Rumeau , Sead Chadi , Frederic Pepke , Martin Beaumont , Laurent Cauquil et al.
International Human Microbiome Consortium Congress (IHMC), Jun 2024, Rome, Italy
Poster de conférence hal-04666812 v1
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The richer the better: 16S metabarcoding analysis of gut microbiota of laying hens in relation to feed efficiency and adaptation to diet change

Maria Bernard , Alexandre Lecoeur , Jean-Luc Coville , Nicolas Bruneau , Deborah Jardet et al.
13. International Gut Microbiology Symposium 2023, Jun 2023, Aberdeen, United Kingdom. , 2023, Programme and book of abstracts
Poster de conférence hal-04127869 v1

Construction of a 16S mini barcode library for french wild bees

Pichon Magalie , Vignal Alain , Labarthe Emmanuelle , Escaravage Nathalie , Géraldine Pascal et al.
APIMONDIA, Sep 2023, SANTIAGO DU CHILI, Chile. 2023
Poster de conférence hal-04220138 v1
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Avancées réalisées en métabarcoding et en métagénomique dans le cadre du projet SeqOccIn grâce au séquençage longs fragments

Denis Milan , Jean Mainguy , Adrien Castinel , Olivier Bouchez , Sylvie Combes et al.
Colloque INRAE Genomics 2022, May 2022, Orléans, France. , 2022
Poster de conférence hal-03776011 v1
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Impact of host genetics and abiotic stresses on caecal microbiota composition in four different laying hen lines?

Maria Bernard , Jean-Luc Coville , Nicolas Bruneau , Deborah Jardet , Sandrine Lagarrigue et al.
Journées Scientifiques du Département de Génétique Animale, Sep 2022, Bordeaux, France
Poster de conférence hal-03930049 v1
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metagWGS: a workflow to analyse short and long HiFi metagenomic reads

Joanna Fourquet , Maïna Vienne , Jean Mainguy , Vincent Darbot , Pierre Martin et al.
ECCB2022, Sep 2022, Sitges, Spain
Poster de conférence hal-03788263 v1

CONSTRUCTION OF A 16S MINI BARCODE LIBRARY FOR FRENCH WILD BEES

Kamila Canale-Tabet , Emmanuelle Labarthe , Alain Vignal , Nathalie Escaravage , Géraldine Pascal et al.
9th European Congress of Apidology, Sep 2022, belgrade, Serbia
Poster de conférence hal-03855355 v1
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FROGSFUNC: Smart integration of PICRUSt2 software into FROGS pipeline

Vincent Darbot , Moussa Samb , Maria Bernard , Olivier Rué , Géraldine Pascal
JOBIM 2022, Jul 2022, Rennes, France.
Poster de conférence hal-03806133 v1
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PERFORM PROTOCOL TESTS AND SEQUENCE CHECKS ? THE EXPERIENCE FROM MULTIOMICS MICROBIOTA DATA

Maria Bernard , Jean-Luc Coville , Nicolas Bruneau , Deborah Jardet , Fanny Calenge et al.
25ème Séminaire des Doctorants du Département de Génétique Animale (SDDGA 2022), Sep 2022, Bordeaux, France.
Poster de conférence hal-03930031 v1
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Implementation of new methods for metagenomics analysis using PacBio HiFi sequencing

Adrien Castinel , Jean Mainguy , Sylvie Combes , Carole Iampietro , Christine Gaspin et al.
Plant & Animal Genome Conference (PAG) 2022, Jan 2022, San Diego, United States
Poster de conférence hal-03541346 v1
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metagWGS: a workflow to analyse short and long HiFi metagenomic reads Taxonomic profile HiFi vs Short reads assembly

Joanna Fourquet , Jean Mainguy , Maïna Vienne , Céline Noirot , Pierre Martin et al.
JOBIM 2022, Jul 2022, Rennes, France. Actes des exposés (keynotes, contributions orales, mini-symposia) : JOBIM2022_proceedings_oral.pdf (23 Mo) et actes des posters et démos : JOBIM2022_proceedings_posters_demos.pdf (19 Mo). ⟨10.15454/1.5572369328961167E12⟩
Poster de conférence hal-03771202 v1
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Strengths and limits of long read metabarcoding

Jean Mainguy , Adrien Castinel , Olivier Bouchez , Sylvie Combes , Carole Iampietro et al.
ECCB 2022, Sep 2022, Meliá Sitges, Spain
Poster de conférence hal-03848228 v1
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Benefits of PacBio HiFi long reads for metagenomic whole genome analysis

Adrien Castinel , Jean Mainguy , Olivier Bouchez , Sylvie Combes , Carole Iampietro et al.
Environmental And Agronomical Genomics Symposium, Oct 2021, Tours, France
Poster de conférence hal-03538657 v1
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A Long Read project to find optimal technologic combinations for genome assembly and variability, epigenetic marks detection and metagenomic analysis

Carole Iampietro , Camille Eché , Adrien Castinel , Rémy-Félix Serre , Christophe Klopp et al.
PAG XXVIII, Plant and Animal Genome, Jan 2020, San Diego, United States. 2020
Poster de conférence hal-02947690 v1
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Functional inference integrated in the FROGS suite

Moussa Samb , Maria Bernard , Géraldine Pascal
JOBIM2020, Jun 2020, Montpellier, France. , ⟨10.1038/s41587-⟩
Poster de conférence hal-03176828 v1
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Whole metagenome analysis with metagWGS

Joanna Fourquet , Céline Noirot , Christophe Klopp , Philippe Pinton , Sylvie Combes et al.
JOBIM2020, Jun 2020, Montpellier, France
Poster de conférence hal-03176836 v1
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Improving microbial taxonomic profiling with long read technologies

Jean Mainguy , Adrien Castinel , Olivier Bouchez , Sylvie Combes , Carole Iampietro et al.
JOBIM2020, Jun 2020, Montpellier (virtuel), France
Poster de conférence hal-03177058 v1
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Des solutions informatiques innovantes pour l’utilisation et le développement de biomarqueurs de diversité du microbiote.

Maria Bernard , Olivier Rué , Malo Le Boulch , Jean Mainguy , Laurent Cauquil et al.
DefisPHASE 2019, 2019, Rennes, France
Poster de conférence hal-03851900 v1
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Identification of genomic regions for high-resolution taxonomic profiling using long-read sequencing technology

Jean Mainguy , Olivier Bouchez , Adrien Castinel , Sylvie Combes , Christine Gaspin et al.
JOBIM : Journées Ouvertes Biologie Informatique Mathématiques, Jul 2019, Nantes, France. , 2019
Poster de conférence hal-02791605 v1
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Rumen bacteria in sheep : first evidence of host’s genetic control

Annabelle Meynadier , Beatrice Gabinaud , Regis Tomas , Jean Marie Menras , Géraldine Pascal et al.
10. International Symposium on the Nutrition of Herbivores (ISNH10), Sep 2018, Clermont-Ferrand, France. Cambridge University Press, Advances in Animal Biosciences, 9 (3), 2018, 10th. International Symposium on the Nutrition of Herbivores (ISNH10)
Poster de conférence hal-02737229 v1
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MACADAM: A user-friendly MetAboliC pAthways DAtabase for complex Microbial community function Analysis

Malo Le Boulch , Patrice Dehais , Sylvie Combes , Géraldine Pascal
17. European Conference on Computational Biology (ECCB 2018, Workshop "Recent Computational Advances in Metagenomics (RCAM)", Sep 2018, Athens, Greece. 2018
Poster de conférence hal-02785402 v1
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Genetic links between feeding behavior and microbiota of Romane lambs

Christel Marie-Etancelin , Beatrice Gabinaud , Didier Marcon , Flavie Tortereau , Dominique Francois et al.
11. World Congress on Genetics Applied to Livestock Production (WCGALP), Feb 2018, Auckland, New Zealand. Massey University, 1130 p., 2018, Proceedings of the 11th World Congress on Genetics Applied to Livestock Production (WCGALP)
Poster de conférence hal-02736414 v1

The journey of a team of engineers in learning packaging technology

Valentin Marcon , Laure Quintric , Patrick Durand , Olivier Inizan , Caroline Dussart et al.
Jobim (Journées Ouvertes Biologie Informatique Mathématiques), Jul 2018, Marseille, France. , 2018, JOBIM 2018
Poster de conférence hal-02733639 v1
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ARMOr project : genome-wide association analysis of ruminal microbiota in ovis

Christel Marie-Etancelin , Annabelle Meynadier , Regis Tomas , Jean Marie Menras , Beatrice Gabinaud et al.
CRB ANIM - Réunion du Réseau de Centres de Ressources Biologiques pour les animaux domestiques, May 2017, Paris, France. 2017
Poster de conférence hal-02788449 v1

How to design an efficient and robust pipeline for 16S rRNA-gene sequence analysis to improve our understanding on microbial communities?

Lucas Auer , Laurent Cauquil , Stephane Chaillou , Céline Delbès , Eric Dugat-Bony et al.
JOBIM 16. Journées Ouvertes Biologie Informatique Mathématiques, Jul 2015, Clermont-Ferrand, France. , 2015
Poster de conférence hal-01195512 v1
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FROGS : Find Rapidly OTUs with Galaxy Solution

Frédéric Escudie , Lucas Auer , Maria Bernard , Laurent Cauquil , Katia Vidal et al.
Colloque d'Écologie Microbienne organisé par l'Association Française d'Écologie Microbienne (AFEM), Nov 2015, Anglet, France. Oxford University Press, 34, 7 p., 2015, Bioinformatics
Poster de conférence hal-01886389 v1
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Evolutionary aspect of BMP15 function in folliculogenesis

Olivier O. Monestier , Sylvain Auclair , Bertrand Servin , Raffaella Rossetti , Camille Meslin et al.
17. Evolutionary Biology Meeting, Sep 2013, Marseille, France. 2013
Poster de conférence hal-02806825 v1

Oviductal secretions have a positive effect on fertilization in equine species, which involves DMBT1

Cécile Douet , Barbara Ambruosi , Géraldine Pascal , Philippe Monget , C. Moros Nicolas et al.
64. Annual Meeting of the European Federation of Animal Science, Aug 2013, Nantes, France. Wageningen Academic Publishers, Annual Meeting of the European Association for Animal Production, 19, 660 p., 2013, 64th Annual Meeting of the European Federation of Animal Science
Poster de conférence hal-02749534 v1

The ovarian failure associated Y235 residue of human BMP15 gene is target of evolutionary positive selection

Raffaella Rossetti , Sylvain Auclair , Camille Meslin , Géraldine Pascal , Stéphane Fabre et al.
15. International and 14. European Congress on Endocrinology, May 2012, Florence, Italy. BioScientifica, Endocrine Abstracts, 29, 2012, 15th International and 14th European Congress on Endocrinology
Poster de conférence hal-02746767 v1

An evolutionary signature of sperm-egg interaction in vertebrates

Camille Meslin , Sylvie Mugnier , Géraldine Pascal , I. Callebaut , Ghylène Goudet et al.
Evolution 2011, Jun 2011, Norman, United States. 1 p., 2011
Poster de conférence hal-02804899 v1

Evolution et reproduction

Philippe Monget , Julien Bobe , Jean-Louis Couderc , Sylvie Dufour , Michel Guillomot et al.
La Reproduction animale et humaine, Editions Quae, 751 p., 2014, Collection Synthèses, 978-2-7592-2208-7
Chapitre d'ouvrage hal-01205107 v1

Habilitation à Diriger des Recherches

Géraldine Pascal
Autre [q-bio.OT]. Université François Rabelais (Tours), 2013
HDR tel-02809214 v1
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Metabarcoding, FROGS training - May/june 2024

Géraldine Pascal , Lucas Auer
Master. France. 2024
Cours hal-04885674 v1
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Metabarcoding, FROGS training - Oct. 2024

Géraldine Pascal , Lucas Auer
Master. FROGS metabarcoding training - Oct 2024, https://web-genobioinfo.toulouse.inrae.fr/~formation/15_FROGS/current/, France. 2024
Cours hal-04885591 v1
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Metabarcoding, FROGS training – March 2024

Géraldine Pascal , Lucas Auer
Doctoral. France. 2024
Cours hal-04885687 v1
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Les mardis de la grenouilles - Jan./Fev. 2024 - 1:FROGS 4 - 2: FROGSSTAT - 3: Functional Inferencce - 4: FROGS in command lines

Géraldine Pascal , Lucas Auer , Gabryelle Agoutin
Master. France. 2024
Cours hal-04885860 v1
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Metabarcoding, FROGS training - Oct. 2023

Géraldine Pascal , Lucas Auer
Master. France. 2023
Cours hal-04885704 v1
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Metabarcoding, FROGS training - April 2023

Géraldine Pascal , Lucas Auer
Master. France. 2023
Cours hal-04885719 v1
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Metabarcoding, FROGS training - Oct 2022

Géraldine Pascal , Lucas Auer
Master. France. 2022
Cours hal-04885780 v1
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Metabarcoding, FROGS training - May 2022

Géraldine Pascal , Lucas Auer
Master. France. 2022
Cours hal-04885802 v1
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Metabarcoding, FROGS training - June 2022

Géraldine Pascal , Lucas Auer
Master. France. 2022
Cours hal-04885794 v1
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Metabarcoding, FROGS training - June 2021

Géraldine Pascal , Lucas Auer
Doctoral. France. 2021
Cours hal-04885818 v1
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Metabarcoding, FROGS training- Dec. 2021

Géraldine Pascal , Lucas Auer
Master. France. 2021
Cours hal-04885812 v1
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Metabarcoding, FROGS training - March 2021

Géraldine Pascal , Lucas Auer
Master. France. 2021
Cours hal-04885826 v1
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Metabarcoding, FROGS training - March 2020

Géraldine Pascal , Lucas Auer
Master. France. 2020
Cours hal-04885837 v1
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Metabarcoding, FROGS training - Jan. 2020

Géraldine Pascal , Laurent Cauquil
Master. France. 2020
Cours hal-04885843 v1
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Formation FROGS juillet 2019

Géraldine Pascal , Laurent Cauquil
Master. (Trainingon Galaxy : Metagenomics / ITS analysisin FROGS ? / Trainingon Galaxy: Statistics to explore metagenomics), 2019
Cours hal-02790029 v1
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FROGS Training on Galaxy : Metagenomics November 2017

Frédéric Escudié , Lucas Auer , Maria Bernard , Laurent Cauquil , Sarah Maman et al.
Formation Métagénomique avec le logiciel FROGS (Find, Rapidly, Otus with Galaxy Solution), 2017, 270 p
Cours hal-02791696 v1
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FROGS Training on Galaxy : Statistics to Explore Metagenomics

Maria Bernard , Géraldine Pascal , Mahendra Mariadassou , Laurent Cauquil , Stephane Chaillou
Training on Galaxy : Statistics to Explore Metagenomics - FROGS (Find, Rapidly, Otus with Galaxy Solution), 2017, 116 p
Cours hal-02788316 v1
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Février_2017_Formation Métagénomique avec le logiciel FROGS

Géraldine Pascal , Laurent Cauquil , Maria Bernard
2017
Cours hal-02785427 v1