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Géraldine Pascal

94
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Bioinformatics - Comparative Genomics & Metagenomics ========================================================

Publications

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A large database linking the rumen bacterial composition and milk traits in Lacaune sheep

Guillermo Martinez Boggio , Christel Marie-Etancelin , Jean-Marie Menras , Regis Tomas , Marie-Luce Chemit
Scientific Data , 2023, 10 (1), pp.17. ⟨10.1038/S41597-022-01912-3⟩
Journal articles hal-03933175v1
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A pile of pipelines: An overview of the bioinformatics software for metabarcoding data analyses

Ali Hakimzadeh , Alejandro Abdala Asbun , Davide Albanese , Maria Bernard , Dominik Buchner
Molecular Ecology Resources, 2023, ⟨10.1111/1755-0998.13847⟩
Journal articles hal-04183770v1
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A carvacrol‐based product reduces Campylobacter jejuni load and alters microbiota composition in the caeca of chickens

Marion Allaoua , Elsa Bonnafé , Pierre Etienne , Virginie Noirot , Jean‐françois Gabarrou
Journal of Applied Microbiology, 2022, 132 (6), pp.4501-4516. ⟨10.1111/jam.15521⟩
Journal articles hal-03607325v1
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Early Introduction of Plant Polysaccharides Drives the Establishment of Rabbit Gut Bacterial Ecosystems and the Acquisition of Microbial Functions

Charlotte Paës , Thierry Gidenne , Karine Bébin , Joël Duperray , Charly Gohier
mSystems, 2022, 18 p. ⟨10.1128/msystems.00243-22⟩
Journal articles hal-03699002v1
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The intestinal microbial composition in Greylag geese differs with steatosis induction mode: spontaneous or induced by overfeeding

Christelle Knudsen , Julien Arroyo , Maxime Even , Laurent Cauquil , Géraldine Pascal
Animal Microbiome, 2021, 3 (1), ⟨10.1186/s42523-020-00067-z⟩
Journal articles hal-03109374v1
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FROGS: a powerful tool to analyse the diversity of fungi with special management of internal transcribed spacers

Maria Bernard , Olivier Rué , Mahendra Mariadassou , Géraldine Pascal
Briefings in Bioinformatics, 2021, 22 (6), ⟨10.1093/bib/bbab318⟩
Journal articles hal-03323846v1
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Apart From the Diet, the Ruminal Microbiota of Lambs Is Modified in Relation to Their Genetic Potential for Feed Efficiency or Feeding Behavior

Christel Marie-Etancelin , Flavie Tortereau , Beatrice Gabinaud , Guillermo Martinez Boggio , Quentin Le Graverand
Frontiers in Microbiology, 2021, 12 (7), 15 p. ⟨10.3389/fmicb.2021.759432⟩
Journal articles hal-03480852v1

Gut Microbiota-Derived Metabolite Signature in Suckling and Weaned Piglets

Martin Beaumont , Laurent Cauquil , Allan Bertide , Ingrid Ahn , Céline Barilly
Journal of Proteome Research, 2021, 20 (1), pp.982-994. ⟨10.1021/acs.jproteome.0c00745⟩
Journal articles hal-03087209v1
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Culture of rabbit caecum organoids by reconstituting the intestinal stem cell niche in vitro with pharmacological inhibitors or L-WRN conditioned medium

Eloïse Mussard , Cécile Pouzet , Virginie Helies , Géraldine Pascal , Sandra Fourre
Stem Cell Research, 2020, 48, pp.1-10. ⟨10.1016/j.scr.2020.101980⟩
Journal articles hal-02983697v1
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Dietary composition and yeast-microalgae combination supplementation modulate the microbial ecosystem in the caecum, colon and faeces of horses

Pauline Grimm , Sylvie Combes , Géraldine Pascal , Laurent Cauquil , Véronique Julliand
British Journal of Nutrition, 2020, 123 (4), pp.372-382. ⟨10.1017/S0007114519002824⟩
Journal articles hal-02381031v1
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The MACADAM database: a MetAboliC pAthways DAtabase for Microbial taxonomic groups for mining potential metabolic capacities of archaeal and bacterial taxonomic groups

Malo Le Boulch , Patrice Dehais , Sylvie Combes , Géraldine Pascal
Database - The journal of Biological Databases and Curation, 2019, 2019, pp.1-14. ⟨10.1093/database/baz049⟩
Journal articles hal-02276653v1
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Guide pratique à destination des biologistes, bioinformaticiens et statisticiens qui souhaitent s’initier aux analyses métabarcoding

Hélène Falentin , Lucas Auer , Mahendra Mariadassou , Géraldine Pascal , Olivier Rué
Cahier des Techniques de l'INRA, 2019, 97, pp.46-69
Journal articles hal-02311421v1
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Diversity and Co-occurrence Pattern Analysis of Cecal Microbiota Establishment at the Onset of Solid Feeding in Young Rabbits

Tehya Read , Laurence Fortun-Lamothe , Géraldine Pascal , Malo Le Boulch , Laurent Cauquil
Frontiers in Microbiology, 2019, 10, Non paginé. ⟨10.3389/fmicb.2019.00973⟩
Journal articles hal-02154596v1

Probiotics Strains Modulate Gut Microbiota and Lipid Metabolism in Mule Ducks

Maxime Even , Stéphane Davail , Mikael Rey , Annabelle Tavernier , Marianne Houssier
Open Microbiology Journal, 2018, 12 (1), pp.71-93. ⟨10.2174/1874285801812010071⟩
Journal articles hal-01901329v1
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FROGS: Find, Rapidly, OTUs with Galaxy Solution

Frédéric Escudié , Lucas Auer , Maria Bernard , Mahendra Mariadassou , Laurent Cauquil
Bioinformatics, 2018, 34 (8), pp.1287-1294. ⟨10.1093/bioinformatics/btx791⟩
Journal articles hal-02626808v1
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Fumonisin-Exposure Impairs Age-Related Ecological Succession of Bacterial Species in Weaned Pig Gut Microbiota

Ivan Mateos , Sylvie Combes , Géraldine Pascal , Laurent Cauquil , Céline Barilly
Toxins, 2018, 10 (6), pp.230. ⟨10.3390/toxins10060230⟩
Journal articles hal-01829232v1
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Impact of feed restriction and housing hygiene conditions on specific and inflammatory immune response, the cecal bacterial community and the survival of young rabbits

Sylvie Combes , Katia Julian , Océane Martin , Hauteclaire Furbeyre , Laurent Cauquil
Animal, 2017, 11 (5), pp.854-863. ⟨10.1017/S1751731116002007⟩
Journal articles hal-01605508v1
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Phylogenesis and biological characterization of a new glucose transporter in the chicken (Gallus gallus), GLUT12

Edouard Coudert , Géraldine Pascal , Joëlle Dupont , Jean Simon , Estelle Audouin
PLoS ONE, 2015, 10 (10), pp.1-18. ⟨10.1371/journal.pone.0139517⟩
Journal articles hal-01594233v1
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Evolutionary origin of Bone Morphogenetic Protein 15 and growth and differentiation factor 9 and differential selective pressure between mono- and polyovulating species

Olivier Monestier , Bertrand Servin , Sylvain Auclair , Thomas Bourquard , Anne Poupon
Biology of Reproduction, 2014, 91 (4), pp.1-13. ⟨10.1095/biolreprod.114.119735⟩
Journal articles hal-01129871v1
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Structural and functional annotation of the porcine immunome

Harry D Dawson , Jane E Loveland , Géraldine Pascal , James G R Gilbert , Hirohide Uenishi
BMC Genomics, 2013, 14, online (may), Non paginé. ⟨10.1186/1471-2164-14-332⟩
Journal articles hal-01019897v1

Deleted in malignant brain tumor 1 is secreted in the oviduct and involved in the mechanism of fertilization in equine and porcine species

Barbara Ambruosi , Gianluca Accogli , Cécile Lahuec , Sylvie Canepa , Géraldine Pascal
Reproduction [Cambridge], 2013, 146 (2), pp.119-133. ⟨10.1530/REP-13-0007⟩
Journal articles hal-01129750v1
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Positive selection in bone morphogenetic protein 15 targets a natural mutation associated with primary ovarian insufficiency in human

Sylvain Auclair , Raffaella Rossetti , Camille Meslin , Olivier Monestier , Elisa Di Pasquale
PLoS ONE, 2013, 8, online (10), Non paginé. ⟨10.1371/journal.pone.0078199⟩
Journal articles hal-01129774v1

Analyses of pig genomes provide insight into porcine demography and evolution

Martien A. M. Groenen , Alan L. Archibald , Hirohide Uenishi , Christopher K. Tuggle , Yasuhiro Takeuchi
Nature, 2012, 491 (7426), pp.393-398. ⟨10.1038/nature11622⟩
Journal articles cea-00880676v1
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Evolution of genes involved in gamete interaction: Evidence for positive selection, duplications and losses in vertebrates

Camille Meslin , Sylvie Mugnier , Isabelle Callebaut , Michel Laurin , Géraldine Pascal
PLoS ONE, 2012, 7 (9), pp.1-8. ⟨10.1371/journal.pone.0044548⟩
Journal articles hal-01136282v1

An oocyte-preferential histone mRNA stem-loop-binding protein like is expressed in several mammalian species

Aurore Thelie , Géraldine Pascal , Leslie Angulo , Christine Perreau , Pascal Papillier
Molecular Reproduction and Development, 2012, 79 (6), pp.380-391. ⟨10.1002/mrd.22040⟩
Journal articles hal-01129625v1
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The evolutionary history of the SAL1 gene family in eutherian mammals

Camille Meslin , Fanny Brimau , Patricia Nagnan-Le Meillour , I. Callebaut , Géraldine Pascal
BMC Evolutionary Biology, 2011, 11 (148), pp.1-14. ⟨10.1186/1471-2148-11-148⟩
Journal articles hal-02652257v1

Ovocalyxin-36 and other LBP/BPI/PLUNC-like proteins as molecular actors of the mechanisms of the avian egg natural defences

Joël Gautron , Sophie Réhault-Godbert , Géraldine Pascal , Yves Nys , M.T. Hincke
Biochemical Society Transactions, 2011, 39 (4), pp.971-976. ⟨10.1042/BST0390971⟩
Journal articles hal-01129577v1
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PhyleasProg: a user-oriented web server for wide evolutionary analyses

Joël Busset , Cédric Cabau , Camille Meslin , Géraldine Pascal
Nucleic Acids Research, 2011, 39 (Web Server issue), pp.W479-W485. ⟨10.1093/nar/gkr243⟩
Journal articles hal-01129520v1

ICEEc2, a new integrative and conjugative element belonging to the pKLC102/PAGI-2 family, identified in Escherichia coli strain BEN374

D. Roche , Maud Flechard , Nathalie Lallier , Maryline Ferter , Annie Brée
Journal of Bacteriology, 2010, 192 (19), pp.5026-5036. ⟨10.1128/JB.00609-10⟩
Journal articles hal-01129464v1

What makes an egg unique? Clues from evolutionary scenarios of egg-specific genes

X. Tian , Joël Gautron , Philippe Monget , Géraldine Pascal
Biology of Reproduction, 2010, 83 (6), pp.893-900. ⟨10.1095/biolreprod.110.085019⟩
Journal articles hal-01129421v1
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Evolution and functional divergence of NLRP genes in mammalian reproductive systems

Xin Tian , Géraldine Pascal , Philippe Monget
BMC Evolutionary Biology, 2009, 9:202, pp.1-13. ⟨10.1186/1471-2148-9-202⟩
Journal articles hal-02664172v1
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The secretions of oviduct epithelial cells increase the equine in vitro fertilization rate: are osteopontin, atrial natriuretic peptide A and oviductin involved?

Sylvie Mugnier , Morgane Kervella , Cécile Douet , Sylvie Canepa , Géraldine Pascal
Reproductive Biology and Endocrinology, 2009, 7, pp.1-16. ⟨10.1186/1477-7827-7-129⟩
Journal articles hal-02661859v1
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Gene birth, death, and divergence: the different scenarios of reproduction-related gene evolution.

Xin Tian , Géraldine Pascal , Sophie Fouchécourt , Pierre Pontarotti , Philippe Monget
Biology of Reproduction, 2009, 80 (4), pp.616-21. ⟨10.1095/biolreprod.108.073684⟩
Journal articles hal-00831221v1

Genome sequence of the -rhizobium Cupriavidus taiwanensis and comparative genomics of rhizobia

Claire Amadou , Géraldine Pascal , Sophie Mangenot , Michelle Glew , Cyril Bontemps
Genome Research, 2008, 18 (9), pp.1472 - 1483. ⟨10.1101/gr.076448.108⟩
Journal articles hal-01655676v1

Proteome analysis of the phenotypic variation process inPhotorhabdus luminescens

Evelyne Turlin , Géraldine Pascal , Jean-Claude Rousselle , Pascal Lenormand , Saravuth Ngo
Proteomics, 2006, 6 (9), pp.2705-2725. ⟨10.1002/PMIC.200500646⟩
Journal articles hal-02985560v1

Persistent biases in the amino acid composition of prokaryotic proteins

Géraldine Pascal , Claudine Médigue , Antoine Danchin
BioEssays, 2006, 28 (7), pp.726-738. ⟨10.1002/BIES.20431⟩
Journal articles hal-02985564v1

Universal biases in protein composition of model prokaryotes

Géraldine Pascal , Claudine Médigue , Antoine Danchin
Proteins - Structure, Function and Bioinformatics, 2005, 60 (1), pp.27-35. ⟨10.1002/PROT.20475⟩
Journal articles hal-02985536v1

Exploring the Penicillium marneffei genome

Kwok-Yung Yuen , Géraldine Pascal , Samson Wong , Philippe Glaser , Patrick Woo
Archives of Microbiology, 2003, 179 (5), pp.339-353. ⟨10.1007/S00203-003-0533-8⟩
Journal articles hal-02985518v1

A richer gut microbiota is related to better feed efficiency and diet adaptability in laying hens

Maria Bernard , Alexandre Lecoeur , Jean-Luc Coville , Nicolas Bruneau , Deborah Jardet
74. Annual meeting of the european federation of animal science (EAAP), EAAP, Aug 2023, Lyon, France. pp.740
Conference papers hal-04199104v1
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The benefits of long read HiFi sequencing for metagenomic analysis

Adrien Castinel , Jean Mainguy , Sylvie Combes , Carole Iampietro , Christine Gaspin
France génomique - VIIème Animation Wetlab et Bioinfo, Nov 2022, Strasbourg, France
Conference papers hal-03896074v1
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The benefits of long read HiFi sequencing for metabarcoding analysis

Adrien Castinel , Jean Mainguy , Sylvie Combes , Carole Iampietro , Christine Gaspin
PACBIO DISCOVERIES ROADSHOW PARIS, PACBIO, May 2022, Paris, France
Conference papers hal-03740586v1

metagWGS : a workflow to analyse short or long HiFi metagenomic reads

Joanna Fourquet , Maïna Vienne , Jean Mainguy , Vincent Darbot , Pierre Martin
Bioinfo Biosta Genotoul day, Dec 2022, Castanet Tolosan, France
Conference papers hal-03944382v1
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Both quantitative and energetic intake level affect caecal microbiota composition and activity in the growing rabbit

Christelle Knudsen , Thierry Gidenne , Laurent Cauquil , Géraldine Pascal , Christophe Briens
12th World Rabbit Congress, Nov 2021, Nantes, France
Conference papers hal-03649231v1
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Stimuler l'ingestion d'aliments solides au début de la vie : une stratégie prometteuse pour piloter la co-maturation du microbiote et de la muqueuse intestinale

Martin Beaumont , Charlotte Paes , Eloïse Mussard , Laurence Lamothe , Thierry Gidenne
Séminaire Défis Scientifiques, Département de Physiologie Animale et Systèmes d’Elevage, Nov 2019, Rennes, France
Conference papers hal-02884240v1
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Genetic determinism of dairy sheep ruminal microbiota

Christel Marie-Etancelin , Beatrice Gabinaud , Géraldine Pascal , Regis Tomas , Jean Marie Menras
69. Annual Meeting of the European Federation of Animal Science (EAAP), Aug 2018, Dubrovnik, Croatia. 705 p
Conference papers hal-02737262v1

Microbiota as a tool to promote spontaneous liver steatosis in Greylag geese: promising results

Christelle Knudsen , Maxime Even , Julien Arroyo , Sylvie Combes , Laurent Cauquil
69. Annual Meeting of the European Federation of Animal Science (EAAP), Aug 2018, Dubrovnik, Croatia
Conference papers hal-01901325v1

The journey of a team of engineers in learning packaging technology

Laure Quintric , Patrick Durand , Olivier Inizan , Valentin Marcon , Caroline Dussart
Galaxy Community Conference - GCC2018, Jun 2018, Portland, United States
Conference papers hal-02784992v1
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MACADAM a user-friendly MetAboliC pAthway DAtabase for complex Microbial community function analysis

Malo Le Boulch , Patrice Dehais , Sylvie Combes , Géraldine Pascal
Jobim (Journées Ouvertes Biologie Informatique Mathématiques), Jul 2018, Marseille, France
Conference papers hal-02789596v1

Microbial metacommunity: a METABAR coding approach

Marc Buée , Matthieu Barret , Maria Bernard , Didier Debroas , Isabelle Domaizon
2017 Scientific MEM days: Journées scientifiques MEM (Métaomiques et écosystèmes microbiens), Jan 2017, Paris, France
Conference papers hal-01607836v1
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Effect of feeding strategy on the maturation of ceacal microbiota in young rabbits

Tehya Read , Laurence Fortun-Lamothe , Thierry Gidenne , N. Destombes , Laurent Cauquil
11. World Rabbit Congress, Jun 2016, Qingdao, China. 417 p
Conference papers hal-02739131v1

Implantation du microbiote intestinal dans l'iléon et les ceca des canetons Barbarie, Pékin et Mulard par séquençage miseQ

Mickael Rey , Karine Ricaud , Marie-Dominique M.-D. Bernadet , Géraldine Pascal , Sylvie Combes
11. Journées de la Recherche Avicole et des Palmipèdes à Foie Gras, Mar 2015, Tours, France
Conference papers hal-02739751v1
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Modulation de la composition l'écosystème digestif caecal du lapereau par voie alimentaire et relation avec son fonctionnement

Vincent Jacquier , Sylvie Combes , Géraldine Pascal , Laurent L. Cauquil , Beatrice Gabinaud
16. Journées de la Recherche Cunicole, Nov 2015, Le Mans, France. 264 p
Conference papers hal-02742208v1

Find Rapidly OTU with Galaxy Solution

Frédéric Escudie , Lucas Auer , Maria Bernard , Laurent Cauquil , Katia Vidal
JOBIM 2015 - Journées Ouvertes Biologie Informatique Mathématiques, Jul 2015, Clermont-Ferrand, France
Conference papers hal-01535378v1

Rôle des cellules d'oviducte dans la fécondation équine et identification des protéines impliquées

Barbara Ambruosi , Sylvie Mugnier , Cécile Douet , Géraldine Pascal , Guy Duchamp
38. Journée de la Recherche Equine, Institut Français du Cheval et de l'Equitation (IFCE). Labo/service de l'auteur, Le Pin, FRA., Mar 2012, Paris, France. 232 p
Conference papers hal-02748627v1

Etude des mécanismes de la fécondation dans l'espèce équine par une approche comparative entre les modèles équin et porcin.

Sylvie Mugnier , Stéphane Boittin , Sylvie Canepa , Bernadette Delaleu , Cécile Douet
36. Journée de la Recherche Equine, Mar 2010, Paris, France
Conference papers hal-02752835v1

Identification et rôle fonctionnel des acides aminés sous sélection positive des Odorant Binding Proteins: implication dans la spéciation

Camille Meslin , Fanny Brimau , A Leroy , Géraldine Pascal , Patricia Nagnan-Le Meillour
Journées d’Animation des Crédits Incitatifs du Département de Physiologie Animale et Systèmes d’Elevage (JACI Phase), 2010, Tours, France
Conference papers hal-01607662v1
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The richer the better: 16S metabarcoding analysis of gut microbiota of laying hens in relation to feed efficiency and adaptation to diet change

Maria Bernard , Alexandre Lecoeur , Jean-Luc Coville , Nicolas Bruneau , Deborah Jardet
13. International Gut Microbiology Symposium 2023, Jun 2023, Aberdeen, United Kingdom. , 2023, Programme and book of abstracts
Conference poster hal-04127869v1
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Implementation of new methods for metagenomics analysis using PacBio HiFi sequencing

Adrien Castinel , Jean Mainguy , Sylvie Combes , Carole Iampietro , Christine Gaspin
Plant & Animal Genome Conference (PAG) 2022, Jan 2022, San Diego, United States
Conference poster hal-03541346v1
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PERFORM PROTOCOL TESTS AND SEQUENCE CHECKS ? THE EXPERIENCE FROM MULTIOMICS MICROBIOTA DATA

Maria Bernard , Jean-Luc Coville , Nicolas Bruneau , Deborah Jardet , Fanny Calenge
25ème Séminaire des Doctorants du Département de Génétique Animale (SDDGA 2022), Sep 2022, Bordeaux, France.
Conference poster hal-03930031v1
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FROGSFUNC: Smart integration of PICRUSt2 software into FROGS pipeline

Vincent Darbot , Moussa Samb , Maria Bernard , Olivier Rué , Géraldine Pascal
JOBIM 2022, Jul 2022, Rennes, France.
Conference poster hal-03806133v1
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Strengths and limits of long read metabarcoding

Jean Mainguy , Adrien Castinel , Olivier Bouchez , Sylvie Combes , Carole Iampietro
ECCB 2022, Sep 2022, Meliá Sitges, Spain
Conference poster hal-03848228v1
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Avancées réalisées en métabarcoding et en métagénomique dans le cadre du projet SeqOccIn grâce au séquençage longs fragments

Denis Milan , Jean Mainguy , Adrien Castinel , Olivier Bouchez , Sylvie Combes
Colloque INRAE Genomics 2022, May 2022, Orléans, France. , 2022
Conference poster hal-03776011v1
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Impact of host genetics and abiotic stresses on caecal microbiota composition in four different laying hen lines?

Maria Bernard , Jean-Luc Coville , Nicolas Bruneau , Deborah Jardet , Sandrine Lagarrigue
Journées Scientifiques du Département de Génétique Animale, Sep 2022, Bordeaux, France
Conference poster hal-03930049v1

CONSTRUCTION OF A 16S MINI BARCODE LIBRARY FOR FRENCH WILD BEES

Kamila Canale-Tabet , Emmanuelle Labarthe , Alain Vignal , Nathalie Escaravage , Géraldine Pascal
9th European Congress of Apidology, Sep 2022, belgrade, Serbia
Conference poster hal-03855355v1
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metagWGS: a workflow to analyse short and long HiFi metagenomic reads

Joanna Fourquet , Maïna Vienne , Jean Mainguy , Vincent Darbot , Pierre Martin
ECCB2022, Sep 2022, Sitges, Spain
Conference poster hal-03788263v1
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metagWGS: a workflow to analyse short and long HiFi metagenomic reads Taxonomic profile HiFi vs Short reads assembly

Joanna Fourquet , Jean Mainguy , Maïna Vienne , Céline Noirot , Pierre Martin
JOBIM 2022, Jul 2022, Rennes, France. Actes des exposés (keynotes, contributions orales, mini-symposia) : JOBIM2022_proceedings_oral.pdf (23 Mo) et actes des posters et démos : JOBIM2022_proceedings_posters_demos.pdf (19 Mo). ⟨10.15454/1.5572369328961167E12⟩
Conference poster hal-03771202v1
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Benefits of PacBio HiFi long reads for metagenomic whole genome analysis

Adrien Castinel , Jean Mainguy , Olivier Bouchez , Sylvie Combes , Carole Iampietro
Environmental And Agronomical Genomics Symposium, Oct 2021, Tours, France
Conference poster hal-03538657v1
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Whole metagenome analysis with metagWGS

Joanna Fourquet , Céline Noirot , Christophe C. Klopp , Philippe Pinton , Sylvie Combes
JOBIM2020, Jun 2020, Montpellier, France
Conference poster hal-03176836v1
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Functional inference integrated in the FROGS suite

Moussa Samb , Maria Bernard , Géraldine Pascal
JOBIM2020, Jun 2020, Montpellier, France. , ⟨10.1038/s41587-⟩
Conference poster hal-03176828v1
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A Long Read project to find optimal technologic combinations for genome assembly and variability, epigenetic marks detection and metagenomic analysis

Carole Iampietro , Camille Eché , Adrien Castinel , Rémy-Félix Serre , Christophe C. Klopp
PAG XXVIII, Plant and Animal Genome, Jan 2020, San Diego, United States. 2020
Conference poster hal-02947690v1
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Improving microbial taxonomic profiling with long read technologies

Jean Mainguy , Adrien Castinel , Olivier Bouchez , Sylvie Combes , Carole Iampietro
JOBIM2020, Jun 2020, Montpellier (virtuel), France
Conference poster hal-03177058v1
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Identification of genomic regions for high-resolution taxonomic profiling using long-read sequencing technology

Jean Mainguy , Olivier Bouchez , Adrien Castinel , Sylvie Combes , Christine Gaspin
JOBIM : Journées Ouvertes Biologie Informatique Mathématiques, Jul 2019, Nantes, France. , 2019
Conference poster hal-02791605v1
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Des solutions informatiques innovantes pour l’utilisation et le développement de biomarqueurs de diversité du microbiote.

Maria Bernard , Olivier Rué , Malo Le Boulch , Jean Mainguy , Laurent Cauquil
DefisPHASE 2019, 2019, Rennes, France
Conference poster hal-03851900v1
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MACADAM: A user-friendly MetAboliC pAthways DAtabase for complex Microbial community function Analysis

Malo Le Boulch , Patrice Dehais , Sylvie Combes , Géraldine Pascal
17. European Conference on Computational Biology (ECCB 2018, Workshop "Recent Computational Advances in Metagenomics (RCAM)", Sep 2018, Athens, Greece. 2018
Conference poster hal-02785402v1
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Genetic links between feeding behavior and microbiota of Romane lambs

Christel Marie-Etancelin , Beatrice Gabinaud , Didier Marcon , Flavie Tortereau , Dominique Francois
11. World Congress on Genetics Applied to Livestock Production (WCGALP), Feb 2018, Auckland, New Zealand. Massey University, 1130 p., 2018, Proceedings of the 11th World Congress on Genetics Applied to Livestock Production (WCGALP)
Conference poster hal-02736414v1

The journey of a team of engineers in learning packaging technology

Valentin Marcon , Laure Quintric , Patrick Durand , Olivier Inizan , Caroline Dussart
Jobim (Journées Ouvertes Biologie Informatique Mathématiques), Jul 2018, Marseille, France. , 2018, JOBIM 2018
Conference poster hal-02733639v1
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Rumen bacteria in sheep : first evidence of host’s genetic control

Annabelle Meynadier , Beatrice Gabinaud , Regis Tomas , Jean Marie Menras , Géraldine Pascal
10. International Symposium on the Nutrition of Herbivores (ISNH10), Sep 2018, Clermont-Ferrand, France. Cambridge University Press, Advances in Animal Biosciences, 9 (3), 2018, 10th. International Symposium on the Nutrition of Herbivores (ISNH10)
Conference poster hal-02737229v1
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ARMOr project : genome-wide association analysis of ruminal microbiota in ovis

Christel Marie-Etancelin , Annabelle Meynadier , Regis Tomas , Jean Marie Menras , Beatrice Gabinaud
CRB ANIM - Réunion du Réseau de Centres de Ressources Biologiques pour les animaux domestiques, May 2017, Paris, France. 2017
Conference poster hal-02788449v1
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FROGS : Find Rapidly OTUs with Galaxy Solution

Frédéric Escudie , Lucas Auer , Maria Bernard , Laurent Cauquil , Katia Vidal
Colloque d'Écologie Microbienne organisé par l'Association Française d'Écologie Microbienne (AFEM), Nov 2015, Anglet, France. Oxford University Press, 34, 7 p., 2015, Bioinformatics
Conference poster hal-01886389v1

How to design an efficient and robust pipeline for 16S rRNA-gene sequence analysis to improve our understanding on microbial communities?

Lucas Auer , Laurent Cauquil , Stephane Chaillou , Céline Delbes , Eric Dugat-Bony
JOBIM 16. Journées Ouvertes Biologie Informatique Mathématiques, Jul 2015, Clermont-Ferrand, France. , 2015
Conference poster hal-01195512v1

Oviductal secretions have a positive effect on fertilization in equine species, which involves DMBT1

Cécile Douet , Barbara Ambruosi , Géraldine Pascal , Philippe Monget , C. Moros Nicolas
64. Annual Meeting of the European Federation of Animal Science, Aug 2013, Nantes, France. Wageningen Academic Publishers, Annual Meeting of the European Association for Animal Production, 19, 660 p., 2013, 64th Annual Meeting of the European Federation of Animal Science
Conference poster hal-02749534v1
Image document

Evolutionary aspect of BMP15 function in folliculogenesis

Olivier O. Monestier , Sylvain Auclair , Bertrand Servin , Raffaella Rossetti , Camille Meslin
17. Evolutionary Biology Meeting, Sep 2013, Marseille, France. 2013
Conference poster hal-02806825v1

The ovarian failure associated Y235 residue of human BMP15 gene is target of evolutionary positive selection

Raffaella Rossetti , Sylvain Auclair , Camille Meslin , Géraldine Pascal , Stéphane Fabre
15. International and 14. European Congress on Endocrinology, May 2012, Florence, Italy. BioScientifica, Endocrine Abstracts, 29, 2012, 15th International and 14th European Congress on Endocrinology
Conference poster hal-02746767v1

An evolutionary signature of sperm-egg interaction in vertebrates

Camille Meslin , Sylvie Mugnier , Géraldine Pascal , I. Callebaut , Ghylène Goudet
Evolution 2011, Jun 2011, Norman, United States. 1 p., 2011
Conference poster hal-02804899v1

Evolution et reproduction

Philippe Monget , Julien Bobe , Jean-Louis Couderc , Sylvie Dufour , Michel Guillomot
La Reproduction animale et humaine, Editions Quae, 751 p., 2014, Collection Synthèses, 978-2-7592-2208-7
Book sections hal-01205107v1

Habilitation à Diriger des Recherches

Géraldine Pascal
Autre [q-bio.OT]. Université François Rabelais (Tours), 2013
Habilitation à diriger des recherches tel-02809214v1
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Formation FROGS juillet 2019

Géraldine Pascal , Laurent Cauquil
Master. (Trainingon Galaxy : Metagenomics / ITS analysisin FROGS ? / Trainingon Galaxy: Statistics to explore metagenomics), 2019
Lectures hal-02790029v1
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Février_2017_Formation Métagénomique avec le logiciel FROGS

Géraldine Pascal , Laurent Cauquil , Maria Bernard
2017
Lectures hal-02785427v1
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FROGS Training on Galaxy : Metagenomics November 2017

Frédéric Escudié , Lucas Auer , Maria Bernard , Laurent Cauquil , Sarah Maman
Formation Métagénomique avec le logiciel FROGS (Find, Rapidly, Otus with Galaxy Solution), 2017, 270 p
Lectures hal-02791696v1
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FROGS Training on Galaxy : Statistics to Explore Metagenomics

Maria Bernard , Géraldine Pascal , Mahendra Mariadassou , Laurent Cauquil , Stephane Chaillou
Training on Galaxy : Statistics to Explore Metagenomics - FROGS (Find, Rapidly, Otus with Galaxy Solution), 2017, 116 p
Lectures hal-02788316v1