Ghislain DURIF

22
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Publications

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Kernel-Based Testing for Single-Cell Differential Analysis

Anthony Ozier-Lafontaine , Camille Fourneaux , Ghislain Durif , Polina Arsenteva , Céline Vallot et al.

Genome Biology, 2024, 114, ⟨10.1186/s13059-024-03255-1⟩

Article dans une revue hal-04214858v2

The fate of a polygenic phenotype within the genomic landscapes of introgression in the European seabass hybrid zone

Maeva Leitwein , G Durif , E Delpuech , P Gagnaire , B Ernande et al.

Molecular Biology and Evolution, 2024, 41 (9), pp.msae194. ⟨10.1093/molbev/msae194⟩

Article dans une revue hal-04705605v1

A median test for functional data

Zaineb Smida , Lionel Cucala , Ali Gannoun , Ghislain Durif

Journal of Nonparametric Statistics, 2022, 34 (2), pp.520-553. ⟨10.1080/10485252.2022.2064997⟩

Article dans une revue hal-03658578v1
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A Wilcoxon-Mann-Whitney spatial scan statistic for functional data

Zaineb Smida , Lionel Cucala , Ali Gannoun , Ghislain Durif

Computational Statistics and Data Analysis, 2022, 167, pp.107378. ⟨10.1016/j.csda.2021.107378⟩

Article dans une revue hal-03412009v1
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Noninvasive prenatal diagnosis of genetic diseases induced by triplet repeat expansion by linked read haplotyping and Bayesian approach

Cathy Liautard-Haag , Ghislain Durif , Charles Vangoethem , David Baux , Anaïs Louis et al.

Scientific Reports, 2022, 12 (1), pp.11423. ⟨10.1038/s41598-022-15307-2⟩

Article dans une revue hal-03716132v2
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Kernel Operations on the GPU, with Autodiff,without Memory Overflows

Benjamin Charlier , Jean Feydy , Joan Glaunès , François-David Collin , Ghislain Durif

Journal of Machine Learning Research, 2021, 22 (74), pp.1-6. ⟨10.48550/arXiv.2004.11127⟩

Article dans une revue hal-02517462v2
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Divergent clonal differentiation trajectories establish CD8+ memory T cell heterogeneity during acute viral infections in humans

Jeff Mold , Laurent Modolo , Joanna Hård , Margherita Zamboni , Anton J.M. Larsson et al.

Cell Reports, 2021, 35 (8), pp.109174. ⟨10.1016/j.celrep.2021.109174⟩

Article dans une revue hal-03345357v1
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Extending Approximate Bayesian Computation with Supervised Machine Learning to infer demographic history from genetic polymorphisms using DIYABC Random Forest

François‐david Collin , Ghislain Durif , Louis Raynal , Eric Lombaert , Mathieu Gautier et al.

Molecular Ecology Resources, 2021, 21 (8), pp.2598-2613. ⟨10.1111/1755-0998.13413⟩

Article dans une revue hal-03229207v1
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Probabilistic Count Matrix Factorization for Single Cell Expression Data Analysis

Ghislain Durif , Laurent Modolo , Jeff E Mold , Sophie Lambert-Lacroix , Franck Picard

Bioinformatics, 2019, 35, 20, pp.4011-4019. ⟨10.1093/bioinformatics/btz177⟩

Article dans une revue hal-01649275v3
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High Dimensional Classification with combined Adaptive Sparse PLS and Logistic Regression

Ghislain Durif , Laurent Modolo , Jakob Michaelsson , Jeff E. Mold , Sophie Lambert-Lacroix et al.

Bioinformatics, 2018, 34 (3), pp.485-493. ⟨10.1093/bioinformatics/btx571⟩

Article dans une revue hal-01587360v1
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Nonparametric tests and funStatTest R package for functional data

Zaineb Smida , Lionel Cucala , Ali Gannoun , Ghislain Durif

JDS 2024, Bordeaux, May 2024, Bordeaux, France

Communication dans un congrès hal-04579217v1

Using genome-wide ancestry pattern in European sea bass to assess phenotypic variation and ensure sustainable aquaculture

Maeva Leitwein , Ghislain Durif , Pierre-Alexandre Gagnaire , Alain Vergnet , Frédéric Clota et al.

6th Symposium on Genomics in Aquaculture, May 2022, Grenade, Spain

Communication dans un congrès hal-04185352v1
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Benchopt: Reproducible, efficient and collaborative optimization benchmarks

Thomas Moreau , Mathurin Massias , Alexandre Gramfort , Pierre Ablin , Pierre-Antoine Bannier et al.

NeurIPS 2022 - 36. Conference on Neural Information Processing Systems, Nov 2022, La Nouvelle Orléans, United States

Communication dans un congrès hal-03830604v1
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Statistique de balayage spatial non paramétrique pour données fonctionnelles

Zaineb Smida , Lionel Cucala , Ali Gannoun , Ghislain Durif

forum de jeunes mathématicien.ne.s, Dec 2021, Besançon, France

Communication dans un congrès hal-03476841v1
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Probabilistic Count Matrix Factorization for Single Cell Expression Data Analysis

Ghislain Durif , Laurent Modolo , Jeff E. Mold , Sophie Lambert-Lacroix , Franck Picard

RECOMB 2018 - 22nd Annual International Conference on Research in Computational Molecular Biology, Ecole Polytechnique, Apr 2018, Paris, France. pp.254-255

Communication dans un congrès hal-01962030v1
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Bayesian inference of parental allele inheritance in fetus for noninvasive prenatal diagnosis

Ghislain Durif , Cathy Liautard-Haag , Marie-Claire Vincent

Statistical Methods for Post-Genomic Data (SMPGD) 2023, Feb 2023, Gand, Belgium.

Poster de conférence hal-03989144v1
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Bayesian inference of parental allele inheritance in fetus for noninvasive prenatal diagnosis

Ghislain Durif , Cathy Liautard-Haag , Marie-Claire Vincent

StatLearn 2023, Apr 2023, Montpellier, France. , https://statlearn.sciencesconf.org/459803

Poster de conférence hal-04059861v1