Jerome Verdier

49
Documents
Affiliations actuelles
  • Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE)
  • IRHS - Équipe SEED (Semences, Environnement et Développement) (IRHS-SEED)
  • Université d'Angers (UA)
  • Institut Agro Rennes Angers
Identifiants chercheurs
Contact

Publications

Publications

Life on the dry side: a roadmap to understanding desiccation tolerance and accelerating translational applications

R. Marks , J. Ekwealor , M. Artur , L. Bondi , T. Boothby et al.
Nature Communications, 2025, 16 (1), pp.3284. ⟨10.1038/s41467-025-58656-y⟩
Article dans une revue hal-05027363 v1
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BASIC PENTACYSTEINE1 regulates ABI4 by modification of two histone marks H3K27me3 and H3ac during early seed development of Medicago truncatula

Thi Thu Dang , David Lalanne , Joseph Ly Vu , Benoit Ly Vu , Johan Defaye et al.
Frontiers in Plant Science, 2024, 15, ⟨10.3389/fpls.2024.1395379⟩
Article dans une revue hal-04665511 v1
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The re-establishment of desiccation tolerance in germinated tomato ( Solanum lycopersicum ) seeds

Naoto Sano , Jerome Verdier
Seed Science Research, 2024, pp.1-9. ⟨10.1017/S0960258524000047⟩
Article dans une revue hal-04665565 v1
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A stage‐dependent seed defense response to explain efficient seed transmission of Xanthomonas citri pv. fuscans to common bean

Armelle Darrasse , Łukasz Paweł Tarkowski , Martial Briand , David Lalanne , Nicolas Chen et al.
Plant, Cell and Environment, 2024, ⟨10.1111/pce.15037⟩
Article dans une revue hal-04665509 v1
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Dual Transcriptome of Post-Germinating Mutant Lines of Arabidopsis thaliana Infected by Alternaria brassicicola

Mailen Ortega-Cuadros , Laurine Chir , Sophie Aligon , Nubia Velasquez , Tatiana Arias et al.
Data, 2024, 9 (11), pp.137. ⟨10.3390/data9110137⟩
Article dans une revue hal-04799033 v1
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First whole genome assembly and annotation of a European common bean cultivar using PacBio HiFi and Iso-Seq data

Sébastien Carrère , Baptiste Mayjonade , David Lalanne , Sylvain Gaillard , Jérôme Verdier et al.
Data in Brief, 2023, 48, pp.109182. ⟨10.1016/j.dib.2023.109182⟩
Article dans une revue (data paper) hal-04089846 v1
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Genetic Variability in Seed Longevity and Germination Traits in a Tomato MAGIC Population in Contrasting Environments

Elise Bizouerne , Joseph Ly Vu , Benoît Ly Vu , Isidore Diouf , F. Bitton et al.
Plants, 2023, 12 (20), pp.3632. ⟨10.3390/plants12203632⟩
Article dans une revue hal-04258504 v1
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Chromatin Immunoprecipitation dataset of H3ac and H3K27me3 histone marks followed by DNA sequencing of Medicago truncatula embryos during control and heat stress conditions to decipher epigenetic regulation of desiccation tolerance acquisition

Jaiana Malabarba , Zhijuan Chen , David Windels , Jerome Verdier
Data in Brief, 2022, 40, pp.107793. ⟨10.1016/j.dib.2022.107793⟩
Article dans une revue (data paper) hal-03538493 v1
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Chromatin dynamics associated with seed desiccation tolerance/sensitivity at early germination in Medicago truncatula

Naoto Sano , Jaiana Jaiana.Malabarba@inrae.Fr Malabarba , Zhijuan Chen , Sylvain Gaillard , David Windels et al.
Frontiers in Plant Science, 2022, 13, pp.1059493. ⟨10.3389/fpls.2022.1059493⟩
Article dans une revue hal-03919021 v1
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Dual-transcriptomic datasets evaluating the effect of the necrotrophic fungus Alternaria brassicicola on Arabidopsis germinating seeds

Mailen Ortega-Cuadros , Laurine Chir , Sophie Aligon , Tatiana Arias , Jerome Verdier et al.
Data in Brief, 2022, 44, pp.108530. ⟨10.1016/j.dib.2022.108530⟩
Article dans une revue (data paper) hal-03762060 v1
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Multichannel imaging for monitoring chemical composition and germination capacity of cowpea (Vigna unguiculata) seeds during development and maturation

Gamal Elmasry , Nasser Mandour , Yahya Ejeez , Didier Demilly , Salim Al-Rejaie et al.
The Crop Journal, 2022, 10 (5), pp.1399-1411. ⟨10.1016/j.cj.2021.04.010⟩
Article dans une revue hal-03335576 v1
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Seed Transmission of Pathogens: Non-Canonical Immune Response in Arabidopsis Germinating Seeds Compared to Early Seedlings against the Necrotrophic Fungus Alternaria brassicicola

Mailen Ortega-Cuadros , Tiago Lodi de Souza , Romain Berruyer , Sophie Aligon , Sandra Pelletier et al.
Plants, 2022, 11 (13), pp.1708. ⟨10.3390/plants11131708⟩
Article dans une revue hal-03728324 v1
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Regulation of DNA (de)methylation positively impacts seed germination during seed development under heat stress

Jaiana Jaiana.Malabarba@inrae.Fr Malabarba , David Windels , Wenjia Xu , Jerome Verdier
Genes, 2021, 12 (3), ⟨10.3390/genes12030457⟩
Article dans une revue hal-03184120 v1
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RNA sequencing data for heat stress response in isolated Medicago truncatula seed tissues

Zhijuan Chen , Benoit Ly Vu , Olivier Leprince , Jerome Verdier
Data in Brief, 2021, pp.106726. ⟨10.1016/j.dib.2021.106726⟩
Article dans une revue (data paper) hal-03123816 v1
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Medicago ABI3 Splicing Isoforms Regulate the Expression of Different Gene Clusters to Orchestrate Seed Maturation

David Lalanne , Jaiana Malabarba , Joseph Ly Vu , Michaela Hundertmark , Julien Delahaie et al.
Plants, 2021, 10 (8), pp.1710. ⟨10.3390/plants10081710⟩
Article dans une revue hal-03329141 v1
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MtExpress, a Comprehensive and Curated RNAseq-based Gene Expression Atlas for the Model Legume Medicago truncatula

Sebastien Carrere , Jerome Verdier , Pascal Gamas
Plant and Cell Physiology, 2021, 62 (9), pp.1494-1500. ⟨10.1093/pcp/pcab110⟩
Article dans une revue hal-03420304 v1
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Gene co-expression analysis of tomato seed maturation reveals tissue-specific regulatory networks and hubs associated with the acquisition of desiccation tolerance and seed vigour

Elise Bizouerne , Julia Buitink , Benoît Ly Vu , Joseph Ly Vu , Eddi Esteban et al.
BMC Plant Biology, 2021, 21 (1), pp.124. ⟨10.1186/s12870-021-02889-8⟩
Article dans une revue hal-03162464 v1

Genome-wide association study identified candidate genes for seed size and seed composition improvement in M. truncatula

Zhijuan Chen , Vanessa Lancon-Verdier , Christine Le Signor , Yi-Min She , Yun Kang et al.
Scientific Reports, 2021, 11 (1), pp.4224. ⟨10.1038/s41598-021-83581-7⟩
Article dans une revue hal-03181110 v1
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Dataset for transcriptome and physiological response of mature tomato seed tissues to light and heat during fruit ripening

Elise Bizouerne , Benoit Ly Vu , Joseph Ly Vu , Jerome Verdier , Julia Buitink et al.
Data in Brief, 2021, 34, pp.106671. ⟨10.1016/j.dib.2020.106671⟩
Article dans une revue (data paper) hal-03109929 v1
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Genome-Wide Association Studies of Seed Performance Traits in Response to Heat Stress in Medicago truncatula Uncover MIEL1 as a Regulator of Seed Germination Plasticity

Zhijuan Chen , Joseph Ly Vu , Benoit Ly Vu , Julia Buitink , Olivier Leprince et al.
Frontiers in Plant Science, 2021, 12, pp.673072. ⟨10.3389/fpls.2021.673072⟩
Article dans une revue hal-03251660 v1
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Mieux connaître les graines pour améliorer la résistance des plantes à la sécheresse

Jerome Verdier
Jardins de France. Revue de la Société Nationale d'Horticulture de France, 2020, 660, pp.59-61
Article dans une revue hal-04665452 v1
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Physical Dormancy Release in Medicago truncatula Seeds Is Related to Environmental Variations

Juan Pablo Renzi , Jérôme Verdier , Juan Pablo Renzi , Martin Duchoslav , Jan Brus et al.
Plants, 2020, 9 (4), pp.503. ⟨10.3390/plants9040503⟩
Article dans une revue hal-02886055 v1

Snapshot of epigenetic regulation in legumes

David Windels , Thu Thi Dang , Zhijuan Chen , Jerome Verdier
Legume Science, 2020, ⟨10.1002/leg3.60⟩
Article dans une revue hal-03330781 v1
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Utilization of Computer Vision and Multispectral imaging Techniques for Classification of Cowpea (Vigna unguiculata) Seeds

Gamal Elmasry , Nasser Mandour , Marie-Hélène Wagner , Didier Demilly , Jérôme Verdier et al.
Plant Methods, 2019, 15 (1), pp.24. ⟨10.1186/s13007-019-0411-2⟩
Article dans une revue hal-02307748 v1
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The genome of cowpea (<em>Vigna unguiculata</em> [L.] Walp.)

Stefano Lonardi , María Muñoz-Amatriaín , Qihua Liang , Shengqiang Shu , Steve I Wanamaker et al.
The Plant Journal, 2019, 98 (5), pp.767-782. ⟨10.1101/518969⟩
Article dans une revue hal-02619816 v1
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The genome of cowpea ( Vigna unguiculata [L.] Walp.)

Stefano Lonardi , María Muñoz‐amatriaín , Qihua Liang , Shengqiang Shu , Steve Wanamaker et al.
The Plant Journal, 2019, 98 (5), pp.767-782. ⟨10.1111/tpj.14349⟩
Article dans une revue hal-02449486 v1

Lessons from anhydrobiosis in seeds: How not to die when dry

Julia Buitink , Jérôme Verdier , Olivier Leprince
Cryobiology, 2018, 85, pp.132. ⟨10.1016/j.cryobiol.2018.10.060⟩
Article dans une revue hal-02618215 v1
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Gene expression atlas of pigeonpea and its application to gain insights into genes associated with pollen fertility implicated in seed formation

Lekha T. Pazhamala , Shilp Purohit , Rachit K. Saxena , Vanika Garg , L. Krishnamurthy et al.
Journal of Experimental Botany, 2017, 68 (8), pp.2037-2054. ⟨10.1093/jxb/erx010⟩
Article dans une revue hal-01608236 v1
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Modelling of change in permeability induced by dilatancy for brittle geomaterials

Said Rahal , Alain Sellier , Jérôme Verdier
Construction and Building Materials, 2016, 125, pp.613-624. ⟨10.1016/j.conbuildmat.2016.08.002⟩
Article dans une revue hal-01849704 v1
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A Snapshot of Functional Genetic Studies in Medicago truncatula

Yun Kang , Minguye Li , Senjuti Sinharoy , Jérôme Verdier
Frontiers in Plant Science, 2016, 7 (August), pp.1-22. ⟨10.3389/fpls.2016.01175⟩
Article dans une revue hal-02630848 v1
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Metabolic engineering of proanthocyanidin production by repressing the isoflavone pathways and redirecting anthocyanidin precursor flux in legume

Penghui Li , Qiang Dong , Shujun Ge , Xianzhi He , Jérôme Verdier et al.
Plant Biotechnology Journal, 2016, 14 (7), pp.1604-1618. ⟨10.1111/pbi.12524⟩
Article dans une revue hal-02631617 v1
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Analysis of Large Seeds from Three Different Medicago truncatula Ecotypes Reveals a Potential Role of Hormonal Balance in Final Size Determination of Legume Grains

Kaustav Bandyopadhyay , Orhan Uluçay , Michael Udvardi , Jérôme Verdier
International Journal of Molecular Sciences, 2016, 17 (9), pp.1472. ⟨10.3390/ijms17091472⟩
Article dans une revue hal-01602846 v1

The Vigna unguiculata Gene Expression Atlas (VuGEA) from de novo assembly and quantification of RNA-seq data provides insights into seed maturation mechanisms

Shaolun Yao , Chuan Jiang , Ziyue Huang , Ivone Torres-Jerez , Junil Chang et al.
The Plant Journal, 2016, 88 (2), pp.318-327. ⟨10.1111/tpj.13279⟩
Article dans une revue hal-01608926 v1
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ITIS, a bioinformatics tool for accurate identification of transposon insertion sites using next-generation sequencing data

Chuan Jiang , Chao Chen , Ziyue Huang , Renyi Liu , Jérôme Verdier
BMC Bioinformatics, 2015, 16 (1), pp.72. ⟨10.1186/s12859-015-0507-2⟩
Article dans une revue hal-01605647 v1

Inference of Longevity-Related Genes from a Robust Coexpression Network of Seed Maturation Identifies Regulators Linking Seed Storability to Biotic Defense-Related Pathways

Karima Righetti , Joseph Vu , Sandra Pelletier , Benoit Ly Vu , Enrico Glaab et al.
The Plant cell, 2015, 27 (10), pp.2692-2708. ⟨10.1105/tpc.15.00632⟩
Article dans une revue hal-01392707 v1

Regulation of legume seed size by an endosperm-expressed transcription factor

Mélanie Noguero , Christine Le Signor , Vanessa Vernoud , Gregoire G. Aubert , Myriam Sanchez et al.
Legume Perspectives, 2015, 7, pp.12-13
Article dans une revue hal-02632679 v1

DASH transcription factor impacts <em>Medicago truncatula</em> seed size by its action on embryo morphogenesis and auxin homeostasis

Mélanie Noguero , Christine Le Signor , Vanessa Vernoud , Kaustav Bandyopadhyay , Myriam Sanchez et al.
The Plant Journal, 2015, 81 (3), pp.453-466. ⟨10.1111/tpj.12742⟩
Article dans une revue hal-02635451 v1

A Regulatory Network-Based Approach Dissects Late Maturation Processes Related to the Acquisition of Desiccation Tolerance and Longevity of Medicago truncatula Seeds

Jérôme Verdier , David Lalanne , Sandra Pelletier , Ivone Torres-Jerez , Karima Righetti et al.
Plant Physiology, 2013, 163 (2), pp.757 - 774. ⟨10.1104/pp.113.222380⟩
Article dans une revue hal-01209940 v1

A combined histology and transcriptome analysis unravels novel questions on Medicago truncatula seed coat

Jérôme Verdier , Fabrice Dessaint , Charles Schneider , Mona Abirached-Darmency
Journal of Experimental Botany, 2013, 64 (2), pp.459 - 470. ⟨10.1093/jxb/ers304⟩
Article dans une revue hal-02647621 v1

Establishment of theLotus japonicusGene Expression Atlas (LjGEA) and its use to explore legume seed maturation

Jérôme Verdier , Ivone Torres-Jerez , Mingyi Wang , Andry Andriankaja , Stacy N. Allen et al.
The Plant Journal, 2013, 74 (2), pp.351-362. ⟨10.1111/tpj.12119⟩
Article dans une revue hal-01606864 v1
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LegumeGRN: a gene regulatory network prediction server for functional and comparative studies.

Mingyi Wang , Jérôme Verdier , Vagner A Benedito , Yuhong Tang , Jeremy D Murray et al.
PLoS ONE, 2013, 8 (7), pp.e67434. ⟨10.1371/journal.pone.0067434⟩
Article dans une revue hal-01601327 v1

The 'atom-splitting' moment of synthetic biology

Alex J Valentine , Aleysia Kleinert , Jérome Verdier
EMBO Reports, 2012, 13 (8), pp.677-379. ⟨10.1038/embor.2012.95⟩
Article dans une revue hal-01601354 v1
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MtPAR MYB transcription factor acts as an on switch for proanthocyanidin biosynthesis in Medicago truncatula

Jérôme Verdier , Jian Zhao , Ivone Torres-Jerez , Shujun Ge , Chenggang Liu et al.
Proceedings of the National Academy of Sciences of the United States of America, 2012, 109 (5), pp.1766-1771. ⟨10.1073/pnas.1120916109⟩
Article dans une revue hal-01601885 v1

Optimizing TILLING populations for reverse genetics in Medicago truncatula

Christine Le Signor , Vincent V. Savois , Gregoire G. Aubert , Jérôme Verdier , Marie Nicolas et al.
Plant Biotechnology Journal, 2009, 7 (5), pp.430-441. ⟨10.1111/j.1467-7652.2009.00410.x⟩
Article dans une revue hal-02661499 v1

Gene expression profiling of M. truncatula transcription factors identifies putative regulators of grain legume seed filling

Jérôme Verdier , Klementina Kakar , Karine Gallardo Guerrero , Christine Le Signor , Gregoire G. Aubert et al.
Plant Molecular Biology, 2008, 67 (6), pp.567-580. ⟨10.1007/s11103-008-9320-x⟩
Article dans une revue istex hal-02660481 v1

A gene expression atlas of the model legume Medicago truncatula

Vagner A. Benedito , Ivone Torres-Jerez , Jeremy D. Murray , Andry Andriankaja , Stacy Allen et al.
The Plant Journal, 2008, 55 (3), pp.504-513. ⟨10.1111/j.1365-313X.2008.03519.x⟩
Article dans une revue hal-02668894 v1

Transcriptional regulation of storage protein synthesis during dicotyledon seed filling

Jérôme Verdier , Richard Thompson
Plant and Cell Physiology, 2008, 49 (9), pp.1263-1271. ⟨10.1093/pcp/pcn116⟩
Article dans une revue hal-02658752 v1