JF

Jean-Marc Frigerio

34
Documents
Identifiants chercheurs

Publications

Publications

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Enhancing Microbial Genome Reconstruction in Complex Environments by combining Short-and Long-read Sequencing

Carole Belliardo , Arthur Péré , Alain Franc , Jean-Marc Frigerio , Nicolas Maurice et al.

2025 - Journées scientifiques Agroécologie et Numérique, Jan 2025, Dijon, France. , pp.1-1, 2025

Poster de conférence hal-04920790v1

Simple approaches for evaluation of OTU quality based on dissimilarity arrays

Marie-Josée Cros , Jean-Marc Frigerio , Nathalie Peyrard , Alain Franc

Metabarcoding and Metagenomics, 2024, 8, ⟨10.3897/mbmg.8.108649⟩

Article dans une revue hal-04688014v1

Diatom DNA metabarcoding for ecological assessment: Comparison among bioinformatics pipelines used in six European countries reveals the need for standardization

Bonnie Bailet , Laure Apothéloz-Perret-Gentil , Ana Baričević , Teofana Chonova , Alain Franc et al.

Science of the Total Environment, 2020, 745, pp.140948. ⟨10.1016/j.scitotenv.2020.140948⟩

Article dans une revue hal-03152486v1
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Chloroplast DNA variation in a hyperdiverse tropical tree community

Henri Caron , Jean‐françois Molino , Daniel Sabatier , Patrick Léger , Philippe Chaumeil et al.

Ecology and Evolution, 2019, 9 (8), pp.4897-4905. ⟨10.1002/ece3.5096⟩

Article dans une revue hal-02108230v1

A next-generation sequencing approach to river biomonitoring using benthic diatoms

Lenaïg Kermarrec , Alain Franc , Frédéric Rimet , Philippe Chaumeil , Jean-Marc Frigerio et al.

Freshwater Science, 2014, 33 (1), pp.349-363. ⟨10.1086/675079⟩

Article dans une revue hal-02632667v1

Imprints of natural selection along environmental gradients in phenology-related genes of Quercus petraea

Florian Alberto , Jérémy Derory , Christophe C. Boury , Jean-Marc Frigerio , Niklaus E. Zimmermann et al.

Genetics, 2013, 195 (2), pp.495-512. ⟨10.1534/genetics.113.153783⟩

Article dans une revue hal-02649035v1
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Development and implementation of a highly-multiplexed SNP array for genetic mapping in maritime pine and comparative mapping with loblolly pine

Emilie E. Chancerel , Camille Lepoittevin , Grégoire G. Le Provost , Yao-Cheng Lin , Juan Pablo Jaramillo-Correa et al.

BMC Genomics, 2011, 12, 14 p. ⟨10.1186/1471-2164-12-368⟩

Article dans une revue hal-02649406v1
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<em>In vitro vs in silico</em> detected SNPs for the development of a genotyping array : what can we learn from a non-model species?

Camille Lepoittevin , Jean-Marc Frigerio , Pauline Garnier‐géré , Franck F. Salin , María-Teresa Cervera et al.

PLoS ONE, 2010, 5 (6), 9 p. ⟨10.1371/journal.pone.0011034⟩

Article dans une revue hal-02662512v1

Molecular and phenotypic profiling from the base to the crown in maritime pine wood-forming tissue

Jorge Almiro Paiva , Marcelo Arnoldo Garces , A. Alves , Pauline Garnier‐géré , J.C. Rodrigues et al.

New Phytologist, 2008, 178 (2), pp.283-301. ⟨10.1111/j.1469-8137.2008.02379.x⟩

Article dans une revue hal-02655721v1

The proteome of maritime pine wood forming tissue

Jean-Marc J.-M. Gion , Céline C. Lalanne , Grégoire G. Le Provost , Hélène Ferry-Dumazet , Jorge Almiro Paiva et al.

Proteomics, 2005, 5 (14), pp.3731-3751. ⟨10.1002/pmic.200401197⟩

Article dans une revue istex hal-02678286v1

Cross-species transferability and mapping of genomic and cDNA SSRs in pines

David Chagné , Philippe Chaumeil , Agnes Ramboer , Carmen Collada , Antonio Guevara et al.

TAG Theoretical and Applied Genetics, 2004, 19 (6), pp.1204-1214. ⟨10.1007/s00122-004-1683-z⟩

Article dans une revue istex hal-02681281v1

Automated SNP detection in expressed sequence tags : statistical considerations and application to maritime pine sequences

Loick Le Dantec , David Chagné , David Pot , Olivier Cantin , Pauline Garnier‐géré et al.

Plant Molecular Biology, 2004, 54 (3), pp.461-470. ⟨10.1023/B:PLAN.0000036376.11710.6f⟩

Article dans une revue istex hal-02679200v1
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Identification and characterization of water-stress-responsive genes in hydroponically grown maritime pine (Pinus pinaster) seedlings

Christian Dubos , Grégoire Le Provost , David Pot , Franck Salin , Céline Lalanne et al.

Tree Physiology, 2003, 23 (3), pp.169-179. ⟨10.1093/treephys/23.3.169⟩

Article dans une revue hal-04200586v1
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A high density genetic map of maritime pine based on AFLPs

David Chagné , Céline Lalanne , Delphine Madur , Satish Kumar , Jean-Marc Frigério et al.

Annals of Forest Science, 2002, 59 (5-6), pp.627-636. ⟨10.1051/forest:2002048⟩

Article dans une revue hal-00881915v1
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Viromes of two migratory birds as support for identifying the influence of molecular biology and bioinformatics settings

S. Tirera , A. Salmier , D. Donato , Jean-Marc Frigério , S. Thérond et al.

23. International BioInformatics Workshop on Virus Evolution and Molecular Epidemiology, Aug 2018, Berlin, Germany. ⟨10.1093/ve/vez002.069⟩

Communication dans un congrès hal-02735266v1

Gaps to fill when analyzing freshwater diatom diversity with DNA barcoding – notes from a boreal region

Maria Kahlert , Agnes Bouchez , Philippe Chaumeil , Alain Franc , Jean-Marc Frigerio et al.

6. European Phycological Congress, Aug 2015, Londres, United Kingdom. ⟨10.1080/09670262.2015.1069489⟩

Communication dans un congrès hal-02743082v1
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E-Biothon : Une plate-forme pour accélérer les recherches en biologie, santé et environnement

Nicolas Bard , Sylvie Boin , François Bothorel , Philippe Chaumeil , Philippe Collinet et al.

Journées SUCCES 2013, Groupe d'Interet Scientifique (GIS). FRA., Nov 2013, Paris, France

Communication dans un congrès hal-00927495v1
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metaMatch: un algorithme pour l'assignation taxonomique en métagénomique

Jean-Marc Frigerio , Philippe Chaumeil , Pierre Gay , Lenaïg Kermarrec , Frédéric Rimet et al.

journées scientifiques mésocentres et France Grilles 2012, Oct 2012, Paris, France

Communication dans un congrès hal-00766072v1
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A pipeline for automatic taxonomic community inventories on data from NGS : an example with freshwater diatoms

Lenaïg L. Kermarrec , Philippe P. Chaumeil , Frédéric F. Rimet , Jean-Marc Frigerio , Valerie Laval et al.

4th International Barcode of Life Conference, University of Adelaide. Adélaide, AUS., Nov 2011, Adélaide, Australia. 1p

Communication dans un congrès hal-00999998v1

Genome scanning of regions showing divergent evolution between white oaks (Quercus petraea (matt.) Liebl. and Q.robur l.) : new insights from the oak allelic resequencing project

Pauline Garnier‐géré , Tiange Lang , Pierre P. Abadie , Thibaut Decourcelle , Valérie V. Léger et al.

Conference on Forest Ecosystem Genomics and Adaptation, Jun 2010, Madrid, Spain

Communication dans un congrès hal-02753045v1

Selective pressures between oaks and their obligate fungal parasite causing powdery mildew

Marie Laure M. L. Desprez Loustau , Thibaut Decourcelle , Sylvain S. Delzon , Christian Cyril Dutech , Nicolas Feau et al.

Conference on Forest Ecosystem Genomics and Adaptation, Jun 2010, Madrid, Spain

Communication dans un congrès hal-02755832v1

Bioinformatic analysis of Sanger and 454 ESTs in oak

Saneyoshi S. Ueno , Grégoire G. Le Provost , Valérie V. Léger , Christophe Klopp , Celine C. Noirot et al.

Conference on Forest Ecosystem Genomics and Adaptation, Jun 2010, Madrid, Spain. pp.73

Communication dans un congrès hal-00964385v1

Development of a bac library and bac end sequencing for pedunculate oak (Quercus robur L.) : new tools for oak genome studies

Patricia P. Faivre-Rampant , Frederique Bitton , Clément Boussardon , Catherine Bodenes-Brezard , Emilie E. Chancerel et al.

Conference on Forest Ecosystem Genomics and Adaptation, Jun 2010, Madrid, Spain

Communication dans un congrès hal-02753048v1

Analysis of expressed sequence tags in maritime pine (Pinus pinaster Aiton)

Grégoire G. Le Provost , Jean-Marc Frigerio , Philippe Chaumeil , Saneyoshi Ueno , Camille Lepoittevin et al.

Conference on Forest Ecosystem Genomics and Adaptation, Jun 2010, Madrid, Spain

Communication dans un congrès hal-02758480v1

A pipeline for molecular taxonomy

Alain Franc , Melanie Roy , Philippe Chaumeil , Jean-Marc Frigerio

Conference on Forest Ecosystem Genomics and Adaptation, Jun 2010, Madrid, Spain

Communication dans un congrès hal-02751216v1

In silico screening of conserved orthologous sequences(COS) from Fagaceae ESTs resources

Yao-Cheng Lin , Saneyoshi Ueno , Jean-Marc Frigerio , Cyril Cabane , Catherine Bodenes-Brezard Bodénès et al.

Conference on Forest Ecosystem Genomics and Adaptation, Jun 2010, Madrid, Spain

Communication dans un congrès hal-02755595v1

Using transcriptome analysis to identify osmotic stress candidate genes in maritime pine (Pinus pinaster Ait.)

Jean-Marc Frigerio , Christian Dubos , Philippe Chaumeil , Franck F. Salin , V. Garcia et al.

Sustainable Forestry, Wood products and Biotechnology, BIOFOR 02, Nov 2002, Vitoria-Gasteiz, Spain

Communication dans un congrès hal-02764394v1

Transcriptome analysis of wood formation in maritime pine

Frigerio Cantón , Grégoire G. Le Provost , V. Garcia , A. Barre , Jean-Marc Frigerio et al.

Sustainable Forestry, Wood products and Biotechnology, BIOFOR 02, Nov 2002, Vitoria-Gasteiz, Spain

Communication dans un congrès hal-02762876v1

Comment surmonter les difficultés des espèces forestières pour la recherche de QTL

Daniel Prat , Anne Arcade , Catherine Bodenes , Patricia Faivre Rampant , Jean-Marc Frigerio et al.

Rencontres de m2ribel 1997, 1997, Versailles, France

Communication dans un congrès hal-04666203v1

Proteomics for genetic and physiological studies in forest trees : application in Maritime Pine

Christophe Plomion , Nasser N. Bahrman , Paulo Costa , Christian C. Dubos , Jean-Marc Frigerio et al.

Molecular genetics and breeding of forest trees, Haworth press, 2004, 978-1-56022-958-0 978-1-56022-959-9

Chapitre d'ouvrage hal-02827253v1