Joan Hérisson

25
Documents
Affiliation actuelle
  • Laboratoire de Biologie Synthétique et Systémique (LiSSB)
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Publications

Publications

Machine learning in predictive biocatalysis: A comparative review of methods and applications

Neha Tripathi , Joan Hérisson , Jean-Loup Faulon

Biotechnology Advances, 2025, 84, pp.108698. ⟨10.1016/j.biotechadv.2025.108698⟩

Article dans une revue hal-05231537v1

An AI-driven workflow for the accelerated optimization of cell-free protein synthesis

Mostafa Khalil , Aisha Elsawah , An Hoang , Jean-Loup Faulon , Baptiste Panthu et al.

iScience, 2025, 28 (10), pp.113599. ⟨10.1016/j.isci.2025.113599⟩

Article dans une revue hal-05315797v1
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The automated Galaxy-SynBioCAD pipeline for synthetic biology design and engineering

Joan Hérisson , Thomas Duigou , Melchior Du Lac , Kenza Bazi-Kabbaj , Mahnaz Sabeti Azad et al.

Nature Communications, 2022, 13 (1), pp.5082. ⟨10.1038/s41467-022-32661-x⟩

Article dans une revue hal-03649340v2
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XTMS: pathway design in an eXTended metabolic space

Pablo Carbonell , Pierre Parutto , Joan Hérisson , Shashi Bhushan Pandit , Jean-Loup Faulon

Nucleic Acids Research, 2014, 42, pp.W389-394. ⟨10.1093/nar/gku362⟩

Article dans une revue hal-01608645v1
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Analyse des systèmes de visualisation et d'interaction 3D pour la biologie moléculaire

Mouna Essabbah , Samir Otmane , Guillaume Bouyer , Joan Hérisson , Malik Mallem

Revue des Sciences et Technologies de l'Information - Série TSI : Technique et Science Informatiques, 2012, 31 (2), pp.187--214. ⟨10.3166/tsi.31.187-214⟩

Article dans une revue istex hal-00633364v1

Genomic Organization of Evolutionarily Correlated Genes in Bacteria: Limits and Strategies

Ivan Junier , Joan Hérisson , François Képès

Journal of Molecular Biology, 2012, 419 (5), pp.369 - 386. ⟨10.1016/j.jmb.2012.03.009⟩

Article dans une revue istex hal-01635954v1

The bacterial Tn9 chloramphenicol resistance gene : an attractive DNA segment for Mos1 mariner insertions.

Gwénaëlle Crenes , Dina Ivo , Joan Herisson , Sara Dion , Sylvaine Renault et al.

Mol Genet Genomics, 2009, 28, pp.315-328

Article dans une revue hal-00375620v1

The bacterial Tn9 chloramphenicol resistance gene: an attractive DNA segment for Mos1 mariner insertions

Gwenaelle Crenes , Dina Ivo , Joan Herisson , Sarah Dion , Sylvaine Renault et al.

Mol. Genet. Genomics, 2009, 281 (3), pp.315-328

Article dans une revue hal-00617513v1

A 3D pattern matching algorithm for DNA sequences

Joan Hérisson , Guillaume Payen , Rachid Gherbi

Bioinformatics, 2007, 23 (6), pp.680-686. ⟨10.1093/bioinformatics/btl669⟩

Article dans une revue hal-04351587v1

Galaxy-SynBioCAD — An Automated Pipeline for Synthetic Biology Design and Engineering

Joan Hérisson , Pablo Carbonell , Jean-Loup Faulon , Thomas Duigou

Global BioFoundries Alliance Meeting 2023 (GBA2023), Sep 2023, Copenaghen, Denmark

Communication dans un congrès hal-04351679v1

Automated Pipeline for Synthetic Biology Design and Engineering

Jean-Loup Faulon , Thomas Duigou , Joan Hérisson

JBEI seminar series, JBEI (DOE), Oct 2022, Emeryville, CA, United States

Communication dans un congrès hal-04275834v1

The Galaxy-SynBioCAD portal: tools and workflows for synthetic biology and metabolic engineering

Thomas Duigou , Joan Hérisson , Jean-Loup Faulon , Guillaume Gricourt , Kenza Bazi Kabbaj et al.

Journées du PEPI IBIS 2021, Nov 2021, Toulouse, France

Communication dans un congrès hal-04355490v1

Systèmes de visualisation et d'interaction 3D pour la biologie moléculaire

Mouna Essabbah , Samir Otmane , Guillaume Bouyer , Joan Hérisson , Malik Mallem

5èmes journées de l'AFRV, Dec 2010, Orsay, France

Communication dans un congrès hal-00633201v1
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Spatial Information and Boolean Genetic Regulatory Networks.

Matthieu Manceny , Marc Aiguier , Pascale Le Gall , Joan Hérisson , Ivan Junier et al.

Bioinformatics and Computational Biology (BICoB), Apr 2008, New Orleans, United States. pp.270-281, ⟨10.1007/978-3-642-00727-9_26⟩

Communication dans un congrès hal-00812184v1

Spatial organization of DNA: from the physical data to the 3D model

Mouna Essabbah , Samir Otmane , Malik Mallem , Joan Hérisson

7th IEEE/ACS International Conference on Computer Systems and Applications, May 2009, Rabat, Morocco. pp.880--883, ⟨10.1109/AICCSA.2009.5069435⟩

Communication dans un congrès hal-00633194v1
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A New Approach to Design an Interactive System for Molecular Analysis

Mouna Essabbah , Samir Otmane , Joan Hérisson , Malik Mallem

13th International Conference on Human-Computer Interaction (HCI International 2009), Jul 2009, San Diego, CA, United States. pp.713--722, ⟨10.1007/978-3-642-02583-9_77⟩

Communication dans un congrès hal-00407168v1

Towards a biophysical 3D model of the DNA

Mouna Essabbah , Joan Hérisson , Samir Otmane , Malik Mallem

First Workshops on Image Processing Theory, Tools and Applications (IPTA 2008)), Nov 2008, Sousse, Tunisia. pp.85--90, ⟨10.1109/IPTA.2008.4743734⟩

Communication dans un congrès hal-00344875v1
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Visual Data Mining of Genomic Databases by Immersive Graph-Based Exploration

Nicolas Férey , Pierre-Emmanuel Gros , Joan Hérisson , Rachid Gherbi

GRAPHITE 2005, 3rd International Conference On Computer Graphics and Interactives Techniques In Autralia and Southeast Asia, Nov 2005, Dunedin, New Zealand. pp.143-146, ⟨10.1145/1101389.1101418⟩

Communication dans un congrès hal-00145610v1

Combining Applications and Databases Integration Approaches in a Common Distributed Genomic Platform

P. E. Gros , Joan Hérisson , N. Ferey , R. Gherbi

19th International Conference on Advanced Information Networking and Applications (AINA'05) Volume 1 (AINA papers), Mar 2005, Taipei, Taiwan. ⟨10.1109/AINA.2005.136⟩

Communication dans un congrès hal-04351647v1

DNA in Virtuo visualization and exploration of 3D genomic structures

Joan Hérisson , P. Gros , N. Férey , O. Magneau , R. Gherbi

AFRIGRAPH04: 3rd International Conference on Computer Graphics, Virtual Reality, Visualization and Interaction in Africa, Nov 2005, Stellenbosch South Africa, South Africa. pp.35-40, ⟨10.1145/1029949.1029955⟩

Communication dans un congrès hal-04351628v1

Representation and processing of complex DNA spatial architecture and its annotated genomic content

Rachid Gherbi , Joan Hérisson

Pacific Symposium on Biocomputing, Jan 2002, Lihue, United States. pp.151-62, ⟨10.1142/9789812799623_0015⟩

Communication dans un congrès hal-04351635v1