johann confais
- IR BioInfOmics
- Unité de Recherche Génomique Info (URGI)
Présentation
Activité INRAE :
Publications
Publications
panTEannot pipelineLogiciel hal-05195049v1 |
|
panREPET pipelineLogiciel hal-05195047v1 |
|
REPET v3.02019 |
RepetDB: a database of reference TE sequences and their informationAnnual meeting Mobil-ET, GDR CNRS 3546, Dec 2025, Paris, France |
|
Practical training II : REPET12th Repeat Explorer Workshop “Repetitive DNA Annotation in Genome Assemblies.”, May 2025, České Budějovice, Czech Republic |
|
REPET v4.0: A Comprehensive Tool for Transposable Element AnalysisJOBIM 2025, Jul 2025, Bordeaux, France |
|
TE Detection and Annotation Using Repet V4.0International Plant & Animal Genome (PAG 32), Jan 2025, San diego (Californie), United States |
|
REPET V4.0, making life easier for de novo TE annotation12th Repeat Explorer Workshop “Repetitive DNA Annotation in Genome Assemblies.”, May 2025, České Budějovice, Czech Republic |
|
RepetDB: A transposable element databasePlant and Genome Conference PAG, Jan 2025, San Diego (California), United States |
|
Identifying the contribution of transposable elements to cis-regulatory elements in plantsIBRC2025, Jul 2025, Monte Verità, Switzerland |
|
The Brachypodium distachyon Pangenome Highlights Transposable Element Dynamics in the SpeciesInternational Plant & Animal Genome (PAG 32), Jan 2025, San Diego (California), United States |
|
The Brachypodium distachyon Pangenome Highlights Transposable Element Dynamics in the SpeciesInternational Brachypodium Research Conference 2025 (IBRC 2025), Jul 2025, Monte Verità, Switzerland |
|
The Brachypodium distachyon pangenome highlights Transposable Element dynamics in the speciesJournées "BioinfOmics" sur la pangénomique, BioinfOmics, Dec 2024, Toulouse, France |
|
Evolutionary Dynamics of Transposable Elements in Brachypodium distachyon Based on a Pangenomic ApproachInternational Plant & Animal Genome (PAG 31), Jan 2024, San Diego, United States |
|
PlantBioinfoPF (URGI) et son offre de service d'annotation des éléments transposables dans les génomesJournées du PEPI IBIS 2023, PEPI Ingénierie Bio Informatique et Statistique pour les données haut-débit (IBIS), Sep 2023, Paris, France |
|
Practical training III : REPET pipeline11th RepeatExplorer Workshop on the Application of Next Generation Sequencing to Repetitive DNA Analysis, Laboratory of Molecular Cytogenetics of the Biology Centre CAS, May 2023, České Budějovice, Czech Republic |
|
Characterization of Transposable Elements in Pangenomes24th National Congress on Transposable Elements 2023 (CNET 2023), French research community working on transposable elements (CNET), Jul 2023, Perpignan, France |
|
Characterization of Transposable Elements in PangenomesJournées du PEPI IBIS 2023, PEPI Ingénierie Bio Informatique et Statistique pour les données haut-débit (IBIS), Sep 2023, Paris, France |
|
How to use REPET for de novo TE annotation11th RepeatExplorer Workshop on the Application of Next Generation Sequencing to Repetitive DNA Analysis, Laboratory of Molecular Cytogenetics of the Biology Centre CAS, May 2023, České Budějovice, Czech Republic |
|
Insertion et exploitation de données hétérogènes dans un graphe de connaissanceJournées du PEPI IBIS 2023, PEPI Ingénierie Bio Informatique et Statistique pour les données haut-débit (IBIS), Sep 2023, Paris, France |
|
REPET novelties : a versatile and modular packageCNET 2023 : 24th National Congress on Transposable Elements 2023, French research community working on transposable elements (CNET), Jul 2023, Perpignan, France |
|
Linking heterogeneous data from model plant species in a graph databaseSéminaire résidentiel INRAE Semantic Linked Data édition 2023, réseau IN-OVIVE "Intégration de sources/masses de données hétérogènes et ontologies", Oct 2023, Agde, France |
|
Demo session : REPET6th Uppsala Transposon Symposium, Oct 2022, Uppsala, Sweden |
|
Multiple expansion and contraction events in two major chemosensory gene families in aphidsCongrès de la Société Européenne de Biologie Evolutive, Aug 2022, Prague, Czech Republic |
|
REPET evolutions: faster and easier23rd National Congress on Transposable Elements (CNET 2022), French research community working on transposable elements (CNET), Jul 2022, Gif-Sur-Yvette, France |
|
Characterization of Transposable Elements in PangenomesGDR CNRS 3546 Mobil-ET Annual Meeting, Mobil-ET GDR CNRS 3546, Dec 2022, Paris, France |
|
Characterization of Transposable Elements in Pangenomes23rd National Congress on Transposable Elements (CNET 2022), French research community working on transposable elements (CNET), Jul 2022, Gif-Sur-Yvette, France |
|
Transposable elements, from their annotation to their integration into knowledge graphsJournée thématique - Annotation, Intelligence Artificielle et Text-mining, PEPI IBIS, Nov 2022, Jouy-en-Josas, France |
|
Mise en relation de données hétérogènes chez l’espèce modèle Arabidopsis thaliana dans une base de données grapheWork4Graph Integration, Dec 2021, Paris, France |
|
RepetDB: a unified resource for transposable element referencesJournées Ouvertes en Biologie, Informatique et Mathématiques (JOBIM) 2022, SFBI; IFB; GDR BIM, Jul 2022, Rennes, France |
|
A first glimpse into the genetic architecture of pathogenicity of Zymoseptoria tritici on bread wheat29. Fungal genetics conference Asilomar 17, Mar 2017, Pacific Grove, CA, United States. p.246 |
|
Resolution of population structure in the wheat pathogen Zymoseptoria tritici using either 12 or 4000 microsatellite markers9.International symposium on Septoria diseases of cereals, Apr 2016, Paris, France. p.68 |
|
|
|
Leaf blotch on durum wheat in France:characterization of the species complex responsible of the disease with a focus on Parastagonospora nodorum9.International symposium on Septoria diseases of cereals, Apr 2016, Paris, France. p.31 |
The power of GWAS to detect natural genetic variation associated with pathogeny in Zymoseptoria tritici9.International symposium on Septoria diseases of cereals, Apr 2016, Paris, France. p.17 |
|
|
|
Spécialisation d’hôte et structuration des populations de Zymoseptoria triticiJournées Jean Chevaugeon 2016 (JJC) - 11èmes Rencontres de Phytopathologie - Mycologie, Société Française de Phytopathologie (SFP), Jan 2016, Aussois, France. p.15 |
|
|
Population genetic structure and host specialization in the fungal plant pathogen Zymoseptoria tritici9.International symposium on Septoria diseases of cereals, Apr 2016, Paris, France. p.16 |
Host specialization and structure of Mycosphaerella graminicola populationsMycosphaerella graminicola / Zymoseptoria tritici European Workshop, Sep 2014, exeter, United Kingdom |
|
|
|
Expression profiles of Mycosphaerella graminicola candidate effector genes10es Rencontres de Phytopathologie-Mycologie de la Société Française de Phytopathologie (SFP), Jan 2014, Aussois, France. p. 101 |
Expression patterns of candidate effector genesMycosphaerella graminicola / Zymoseptoria tritici European Workshop, Aug 2013, Harpenden, United Kingdom |
|
|
|
Comparaison de méthodes de suivi de la sensibilité de Botrytis cinerea aux fongicides Carboxamides9. Rencontres de Phytopathologie-Mycologie de la Société Française de Phytopathologie (SFP), Jan 2012, Aussois, France. pp.87-87 |
|
|
Recent evolution of fungicide resistance in French populations of Mycosphaerella graminicolaCrop protection in Southern Britain A.o.A. Biologists, Feb 2011, Cambridge, United Kingdom |
|
|
Experimental strategies to unravel the MDR mechanism in new emergent phenotypes of M. graminicola highly resistant to several DMIs8. International Symposium on Mycosphaerella and Stagonospora Diseases of Cereals, Sep 2011, Mexico, Mexico. pp.38 |
|
|
Evolution of resistance to fungicides in populations of Mycosphaerella graminicola:emergence of new phenotypes highly resistant to DMIsEPPO Workshop on Azole fungicides and Septoria leaf blotch control, Dec 2010, harpenden, United Kingdom |
|
|
Characterisation of French powdery mildew populations infecting triticale9ème conférence internationale sur les maladies des plantes, Dec 2009, Tours, France |
|
|
Use of replicative genomic libraries to clone fungicide resistance alleles3rd Botrytis Genome Workshop, Sep 2008, Tenerife, Spain |
Genetic diversity and structuring factors for Botrytis cinerea french populations7. Journées Jean Chevaugeon, Jan 2008, Aussois, France |
|
|
|
Genetic diversity and structuring factors for Botrytis cinerea french populations14. International Botrytis Symposium, Oct 2007, Cape Town, South Africa |
|
|
Resistance to fungicides and genetic diversity among Botrytis cinerea populations14. International Botrytis Symposium, Oct 2007, Cape Town, South Africa |
|
|
Effect of host plants on sympatric genetic differentiations in french populations of Botrytis cinerea14. International Botrytis Symposium, Oct 2007, Cape Town, South Africa |
|
|
Feeding behavior of neonate oblique banded leafroller: determination of ingested volumes by fluorescence spectroscopy50th Annual Meeting of the Entomological Society of America, Nov 2002, Fort Lauderdale, United States |
|
|
A roadmap for the adoption of pangenomics in agronomy2025 |
|
|
Genomic architecture of the self-incompatibility locus in apple provides insights into the evolution of collaborative non-self recognition2025 |
|
|
Building pangenomes for domesticated and wild tree species: genomic complexity and strategies2026 |
|
|
Contrasting genomic routes to domestication in Occidental and Oriental pears2026 |
|
|
The Brachypodium distachyon pangenome highlights Transposable Element dynamics in the species2024 |