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johann confais

49
Documents
Current affiliations
  • 1068954
  • 1002240
Researcher identifiers
  • IdHAL johann-confais
  • ORCID 0000-0003-2945-5036
  • Google Scholar : https://scholar.google.fr/citations?user=s6B4qnYAAAAJ

Presentation

Activité INRAE : ---------------- - **Février 2018 :** UR Génomique Info (URGI) 1164 INRAE, Université Paris-Saclay dans l'équipe Analyse des génomes (ANAGEN) - **Octobre 2012 :** UMR Biologie et gestion des risques en agriculture (BIOGER) 1290 AgroParisTech, INRAE, Université Paris-Saclay dans l'équipe Evolution et Génomique des Interactions plantes Pathogènes (EGIP) - **Octobre 2006 :** UMR Biologie et gestion des risques en agriculture (BIOGER) 1290 AgroParisTech, INRAE, Université Paris-Saclay dans l'équipe Antifongiques, Mode d'Action et Résistance (AMAR)

Publications

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Genome-Wide Screening of Transposable Elements in the Whitefly, Bemisia tabaci (Hemiptera: Aleyrodidae), Revealed Insertions with Potential Insecticide Resistance Implications

Marwa Zidi , Khouloud Klai , Johann Confais , Benoît Chénais , Aurore Caruso et al.
Journal articles hal-03658789v1
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SEPTODUR - Contribution à la durabilité de la lutte génétique et chimique contre la Septoriose du blé dur par la caractérisation des populations du complexe d’espèces responsable de cette maladie.

Romain Valade , Thomas Caparroy , Oriane Beaudouin , Cindy Vitry , Marie Massot et al.
Innovations Agronomiques, 2022, 84, pp.44-58. ⟨10.15454/ncj0-em61⟩
Journal articles hal-03576072v1
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Screening of Helicoverpa armigera Mobilome Revealed Transposable Element Insertions in Insecticide Resistance Genes

Khouloud Klai , Benoît Chénais , Marwa Zidi , Salma Djebbi , Aurore Caruso et al.
Journal articles hal-03059141v1

A small secreted protein in Zymoseptoria tritici is responsible for avirulence on wheat cultivars carrying the Stb6 resistance gene

Ziming Zhong , Thierry Marcel , Fanny E. Hartmann , Xin Ma , Clémence Plissonneau et al.
New Phytologist, 2017, 214 (2), pp.619 - 631. ⟨10.1111/nph.14434⟩
Journal articles hal-01530838v1
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Association Genetics in Plant Pathogens: Minding the Gap between the Natural Variation and the Molecular Function

Anne Genissel , Johann Confais , Marc-Henri Lebrun , Lilian Gout
Frontiers in Plant Science, 2017, 8, ⟨10.3389/fpls.2017.01301⟩
Journal articles hal-01607896v1
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Population structure and temporal maintenance of the multihost fungal pathogen Botrytis cinerea: causes and implications for disease management.

Anne Sophie A. S. Walker , Pierre Gladieux , Véronique Decognet , Marc Fermaud , Johann J. Confais et al.
Environmental Microbiology, 2015, 17 (4), pp.1261-1274. ⟨10.1111/1462-2920.12563⟩
Journal articles hal-02638009v1
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Development of a rapid multiplex SSR genotyping method to study populations of the fungal plant pathogen Zymoseptoria tritici

Angelique A. Gautier , Thierry T. Marcel , Johann J. Confais , C. Crane , G Kema et al.
BMC Research Notes, 2014, 7, p. 373. ⟨10.1186/1756-0500-7-373⟩
Journal articles hal-02630016v1

Septoriose et résistance aux fongicides. Enseignements de la saison 2010, notamment concernant les souches émergentes sur blé

Anne Sophie A. S. Walker , Johann J. Confais , Daniel D. Martinho , Pierre P. Leroux
Phytoma la Défense des Végétaux, 2011, 641 (février), pp.9-11
Journal articles hal-01000509v1

Evidence of host-range expansion from new powdery mildew (Blumeria graminis) infections of triticale (xTriticosecale) in France

Anne Sophie A. S. Walker , Annaig A. Bouguennec , Johann J. Confais , Guillaume G. Morgant , Pierre P. Leroux et al.
Plant Pathology, 2011, 60 (02), pp.207-220. ⟨10.1111/j.1365-3059.2010.02379.x⟩
Journal articles hal-01000533v1
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Botrytis pseudocinerea, a new cryptic species causing gray mold in french vineyards in sympatry with botrytis cinerea

Anne Sophie A. S. Walker , Angelique Gautier , Johann J. Confais , Daniel Martinho , Muriel M. Viaud et al.
Phytopathology, 2011, 101 (12), pp.1433-1445. ⟨10.1094/PHYTO-04-11-0104⟩
Journal articles hal-01019801v1

Oïdium, le cas triticale est riche d'enseignements. Caractérisation des populations d'oïdium infestant le triticale : révélation d'une nouvelle entité à l'origine de cette maladie émergente, et ses conséquences pour la sélection variétale

Anne Sophie A. S. Walker , Annaig A. Bouguennec , Johann J. Confais , Guillaume G. Morgant , Pierre P. Leroux et al.
Phytoma la Défense des Végétaux, 2009, 629 (Décembre), pp.21-25
Journal articles hal-00964428v1

RepetDB: a unified resource for transposable element references

Mariène Wan , Nicolas Francillonne , Raphaël Flores , Françoise Alfama , Johann Confais et al.
Journées Ouvertes en Biologie, Informatique et Mathématiques (JOBIM) 2022, SFBI; IFB; GDR BIM, Jul 2022, Rennes, France
Conference papers hal-03819882v1

Transposable elements, from their annotation to their integration into knowledge graphs

Johann Confais , Mariène Wan , Somia Saidi , Nicolas Francillonne , Hadi Quesneville et al.
Journée thématique - Annotation, Intelligence Artificielle et Text-mining, PEPI IBIS, Nov 2022, Jouy-en-Josas, France
Conference papers hal-03876510v1

Demo session : REPET

Johann Confais
6th Uppsala Transposon Symposium, Oct 2022, Uppsala, Sweden
Conference papers hal-03838843v1

REPET evolutions: faster and easier

Johann Confais , Mariène Wan , Hadi Quesneville
23rd National Congress on Transposable Elements (CNET 2022), French research community working on transposable elements (CNET), Jul 2022, Gif-Sur-Yvette, France
Conference papers hal-03815061v1

Characterization of Transposable Elements in Pangenomes

Somia Saidi , Johann Confais , Hadi Quesneville
23rd National Congress on Transposable Elements (CNET 2022), French research community working on transposable elements (CNET), Jul 2022, Gif-Sur-Yvette, France
Conference papers hal-03819044v1

Characterization of Transposable Elements in Pangenomes

Somia Saidi , Johann Confais , Hadi Quesneville
GDR CNRS 3546 Mobil-ET Annual Meeting, Mobil-ET GDR CNRS 3546, Dec 2022, Paris, France
Conference papers hal-03890780v1

Mise en relation de données hétérogènes chez l’espèce modèle Arabidopsis thaliana dans une base de données graphe

Johann Confais , Nicolas Francillonne , Yanis Toumert
Work4Graph Integration, Dec 2021, Paris, France
Conference papers hal-03877594v1

A first glimpse into the genetic architecture of pathogenicity of Zymoseptoria tritici on bread wheat

Thierry Marcel , Aurélie Ducasse , Jérome Compain , Nicolas Lapalu , Z Chang Zhong Chen et al.
29. Fungal genetics conference Asilomar 17, Mar 2017, Pacific Grove, CA, United States. p.246
Conference papers hal-01530825v1
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Population genetic structure and host specialization in the fungal plant pathogen Zymoseptoria tritici

Lilian L. Gout , Johann J. Confais , M. Massot , Aurélie Ducasse , R. Valade et al.
9.International symposium on Septoria diseases of cereals, Apr 2016, Paris, France. p.16
Conference papers hal-02799804v1

The power of GWAS to detect natural genetic variation associated with pathogeny in Zymoseptoria tritici

Anne Genissel , Marie-Pierre Guillot , Johann J. Confais , Lilian Gout , Marc-Henri Lebrun et al.
9.International symposium on Septoria diseases of cereals, Apr 2016, Paris, France. p.17
Conference papers hal-01531629v1
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Spécialisation d’hôte et structuration des populations de Zymoseptoria tritici

Johann J. Confais , A. Massot , Aurélie Ducasse , Romain Valade , Lilian Gout et al.
Journées Jean Chevaugeon 2016 (JJC) - 11èmes Rencontres de Phytopathologie - Mycologie, Société Française de Phytopathologie (SFP), Jan 2016, Aussois, France. p.15
Conference papers hal-02796908v1

Resolution of population structure in the wheat pathogen Zymoseptoria tritici using either 12 or 4000 microsatellite markers

Johann J. Confais , Aurélie Ducasse , Anne Genissel , Lilian Gout
9.International symposium on Septoria diseases of cereals, Apr 2016, Paris, France. p.68
Conference papers hal-01531631v1
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Leaf blotch on durum wheat in France:characterization of the species complex responsible of the disease with a focus on Parastagonospora nodorum

Romain Valade , Thomas Caparroy , Cindy Vitry , Oriane Beaudouin , Johann J. Confais et al.
9.International symposium on Septoria diseases of cereals, Apr 2016, Paris, France. p.31
Conference papers hal-02799258v1

Host specialization and structure of Mycosphaerella graminicola populations

Johann J. Confais , Lilian L. Gout , Marie Massot
Mycosphaerella graminicola / Zymoseptoria tritici European Workshop, Sep 2014, exeter, United Kingdom
Conference papers hal-02793825v1

Spécialisation d’hôte et structure des populations de Mycosphaerella graminicola, agent de la Septoriose du blé

Johann Confais , Lilian Gout , Marie Massot
36ème colloque « Petit pois déridé », Aug 2014, Orsay, France
Conference papers hal-01584444v1
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Expression profiles of Mycosphaerella graminicola candidate effector genes

Johann J. Confais , Houda Fartoun , Lilian Gout , Marc-Henri Lebrun , Thierry Marcel et al.
10es Rencontres de Phytopathologie-Mycologie de la Société Française de Phytopathologie (SFP), Jan 2014, Aussois, France. p. 101
Conference papers hal-01019611v1

Expression patterns of candidate effector genes

Johann J. Confais
Mycosphaerella graminicola / Zymoseptoria tritici European Workshop, Aug 2013, Harpenden, United Kingdom
Conference papers hal-02804080v1
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Comparaison de méthodes de suivi de la sensibilité de Botrytis cinerea aux fongicides Carboxamides

Johann J. Confais , Daniel D. Martinho , Anne Sophie A. S. Walker
9. Rencontres de Phytopathologie-Mycologie de la Société Française de Phytopathologie (SFP), Jan 2012, Aussois, France. pp.87-87
Conference papers hal-01000248v1
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Recent evolution of fungicide resistance in French populations of Mycosphaerella graminicola

Anne Sophie A. S. Walker , Johann J. Confais , Daniel Martinho , G. Couleaud , G. Beauvallet et al.
Crop protection in Southern Britain A.o.A. Biologists, Feb 2011, Cambridge, United Kingdom
Conference papers hal-02748327v1
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Experimental strategies to unravel the MDR mechanism in new emergent phenotypes of M. graminicola highly resistant to several DMIs

Selim Omrane , Anne Sophie A. S. Walker , Johann J. Confais , Daniel Martinho , Catherine Lanen et al.
8. International Symposium on Mycosphaerella and Stagonospora Diseases of Cereals, Sep 2011, Mexico, Mexico. pp.38
Conference papers hal-01019310v1
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Evolution of resistance to fungicides in populations of Mycosphaerella graminicola:emergence of new phenotypes highly resistant to DMIs

Anne Sophie A. S. Walker , Johann J. Confais , Daniel Martinho , Selim Omrane , Pierre P. Leroux et al.
EPPO Workshop on Azole fungicides and Septoria leaf blotch control, Dec 2010, harpenden, United Kingdom
Conference papers hal-02814825v1
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Characterisation of French powdery mildew populations infecting triticale

Anne Sophie A. S. Walker , Annaig A. Bouguennec , Johann J. Confais , Guillaume G. Morgant , Pierre P. Leroux et al.
9ème conférence internationale sur les maladies des plantes, Dec 2009, Tours, France
Conference papers hal-02751721v1

Genetic diversity and structuring factors for Botrytis cinerea french populations

Anne Sophie A. S. Walker , Véronique Decognet , Marc Fermaud , Alexandre Bout , Johann J. Confais et al.
7. Journées Jean Chevaugeon, Jan 2008, Aussois, France
Conference papers hal-02753395v1
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Use of replicative genomic libraries to clone fungicide resistance alleles

Catherine C. Lanen , Johann J. Confais , Christiane Auclair , Sabine, Helma S. H. Fillinger-David
3rd Botrytis Genome Workshop, Sep 2008, Tenerife, Spain
Conference papers hal-02819504v1
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Effect of host plants on sympatric genetic differentiations in french populations of Botrytis cinerea. Abstract

Elisabeth E. Fournier , Johann J. Confais , Véronique Decognet , Marc Fermaud , Alexandre Bout et al.
14. International Botrytis Symposium, Oct 2007, Cape Town, South Africa
Conference papers hal-02756534v1
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Genetic diversity and structuring factors for Botrytis cinerea french populations

Anne Sophie A. S. Walker , Véronique Decognet , Marc Fermaud , Alexandre Bout , Johann J. Confais et al.
14. International Botrytis Symposium, Oct 2007, Cape Town, South Africa
Conference papers hal-02757549v1
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Resistance to fungicides and genetic diversity among Botrytis cinerea populations. Abstract

Anne Sophie A. S. Walker , Johann J. Confais , Pierre P. Leroux , Laurence L. Bill , Véronique Decognet et al.
14. International Botrytis Symposium, Oct 2007, Cape Town, South Africa
Conference papers hal-02757498v1
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Feeding behavior of neonate oblique banded leafroller: determination of ingested volumes by fluorescence spectroscopy

Johann J. Confais , Charles Vincent , Benoit Rancourt
50th Annual Meeting of the Entomological Society of America, Nov 2002, Fort Lauderdale, United States
Conference papers hal-02828735v1

REPET evolutions: faster and easier

Mariène WAN , Johann Confais , Hadi Quesneville
Jobim 2022, Jul 2022, Rennes, France.
Conference poster hal-03819511v1

REPET evolutions: faster and easier

Johann Confais , Mariène Wan , Hadi Quesneville
6th Uppsala Transposon Symposium, Oct 2022, Uppsala, Sweden.
Conference poster hal-03838081v1
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Resolution provided by microsatellite markers in detecting population structure of the wheat pathogen Zymoseptoria tritici

Johann J. Confais , Aurélie Ducasse , Anne Genissel , Lilian L. Gout
ECFG13. European conference on fungal genetics, Apr 2016, PARIS LA VILLETTE, France. p.515, 2016
Conference poster hal-02794992v1
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Population genetic structure and host specialization in the fungal plant pathogen Zymoseptoria tritici

Lilian L. Gout , Johann J. Confais , Marie Massot , Aurélie Ducasse , Romain Valade et al.
ECFG13 European conference on fungal genetic, 2016, PARIS LA VILLETTE, France. p.275, 2016
Conference poster hal-02800481v1
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Spécialisation d’hôte et structure des populations de Mycosphaerella graminicola, agent de la Septoriose du blé

Johann J. Confais , Lilian L. Gout , Marie Massot
36ème colloque « Petit pois déridé », Aug 2015, orsay, France. 2014
Conference poster hal-02798252v1

Expression profiles of Mycosphaerella graminicola effector genes highlight a succession of different infectious strategies during wheat leaves colonization

Johann J. Confais , Houda Fartoun , Elisabetta E. Marchegiani , Lilian L. Gout , Thierry T. Marcel et al.
The 7. Effectome meeting, Oct 2014, Lauret, France. , 2014
Conference poster hal-02801317v1

Expression profiles of Mycosphaerella graminicola candidate effector genes

Johann J. Confais
effectome, Sep 2013, lauret, France. 2013
Conference poster hal-02804228v1
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Botrytis pseudocinerea, a new cryptic species causing grey mould in French vineyards in symatry with Botrytis cinerea

Anne Sophie A. S. Walker , Angelique A. Gautier , Johann J. Confais , Muriel M. Viaud , Pascal P. Le Pecheur et al.
26. Fungal Genetics Conference at Asilomar, Mar 2011, pacific grove, United States. , 2011
Conference poster hal-02745749v1

Characterization of emergent Septoria tritici isolates highly resistant to DMIs: efficacy of fungicides strategies and future insights

Selim Omrane , Anne Sophie A. S. Walker , Johann J. Confais , Daniel Martinho , Gilles Couleaud et al.
EPPO Workshop on Azole fungicides and Septoria leaf blotch control, Dec 2010, Harpenden, United Kingdom. 2010
Conference poster hal-02822450v1