Julie Ferreira de Carvalho

70
Documents

Présentation

INRAE Researcher

Currently @UMR IRHS : Research Institute in Horticulture and Seeds

Research interests

  • Studying the bases of phenotypic diversity and how plants cope with challenging and fluctuating environments is essential to improve resilience and sustainability of biological systems. Using complex polyploid plant models I investigate the functional and structural consequences of hybridisation and genome doubling on plant genomes in an evolutionary and ecological framework. As all Angiosperms have experienced at least one round of genome doubling and as most important crops have multiple sets of chromosomes, it is paramount to dive into their genomes in the light of this complex and redundant ecosystem. I have been interested in determining the molecular (genetic, epigenetic) bases of polyploid plant phenotypes and adaptation to various environmental cues (both abiotic and biotic). I utilize multidisciplinary approaches combining quantitative genetics, evolutionary biology, ecology, experimental and molecular biology, and bioinformatics to inform the genetic and epigenetic bases of polyploid speciation and tackle important questions in plant adaptation and evolution. In the last ten years, I pushed forward the knowledge frontier around three main questions:
    • What are the consequences of interspecific hybridization and polyploidy on genome organization, and how do these changes contribute to functional diversification and adaptation to the environment?
    • How important is epigenetics in fostering new functional traits and adapted phenotypes to contrasted environments and herbivory?
    • What is the extent of the unexplored diversity (structural variants, genetics and epigenetics) at the intraspecific and interspecific levels, and how much of this diversity could be harvested to enhance plant response to biotic and abiotic cues?

Scientific Skills

  • Comparative genomics and transcriptomics: Bioinformatics analyses, assemblies, annotations, differential gene transcription, SNP calling and identification of promoter regions and Transposable Elements
    • Phylogeny, Quantitative and Population Genetics: Neighbor Joining, Maximum Likelihood and Maximum Parsimony, Population structure, Genome Wide Association Studies, Genotyping analyses (DNA-Seq and DNA microarrays)
    • Bio-statistics and environments: Experimental designs (RCBD), parametric and non-parametric tests, linear models, mixed models. R programming, Rstudio, Galaxy and Unix, knowledge in Python programming
    • Molecular Biology: DNA, RNA extractions, cDNA synthesis, PCR, real-time quantitative PCR and derived methods, cloning and sequencing, library preparation for different sequencing platforms
    • Epigenomics: Bisulfite treatment and sequencing (WGBS, Epi-GBS), differential methylation level analyses, smallRNA extraction and analyses

Publications

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Publications

Image document

Metabolomic datasets of an apple progeny carrying resistance quantitative trait loci to apple scab before or after inoculation of the pathogen Venturia inaequalis

Romane Lapous , Florent Magot , Romain Larbat , Caroline Denancé , Christian Cattanéo et al.
Data in Brief, 2025, 60, pp.111566. ⟨10.1016/j.dib.2025.111566⟩
Article dans une revue (data paper) hal-05069503 v1
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Phenotyping data coupled with RNA sequencing of apple genotypes exhibiting contrasted quantitative trait loci architecture for apple scab (Venturia inaequalis) resistance

Juliette Bénéjam , Julie Ferreira de Carvalho , Elisa Ravon , Christelle Heintz , Matthieu Gaucher et al.
Data in Brief, 2024, 56, pp.110778. ⟨10.1016/j.dib.2024.110778⟩
Article dans une revue hal-04854227 v1
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Phenotyping Data Coupled with Rna Sequencing of Apple Genotypes Exhibiting Contrasted Quantitative Trait Loci Architecture for Apple Scab (Venturia Inaequalis) Resistance

Juliette Bénéjam , Julie Ferreira de Carvalho , Elisa Ravon , Christelle Heintz , Matthieu Gaucher et al.
Data in Brief, 2024, ⟨10.2139/ssrn.4766562⟩
Article dans une revue hal-04665550 v1
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Combined cytogenetic and molecular methods for taxonomic verification and description of Brassica populations deriving from different origins

Cyril Falentin , Houria Hadj-Arab , Fella Aissiou , Claudia Bartoli , Giuseppe Bazan et al.
Genetic Resources, 2024, 5 (9), pp.61-71. ⟨10.46265/genresj.ryaj6068⟩
Article dans une revue hal-04608007 v1

Phylogenomic analysis provides insights into MADS-box and TCP gene diversification and floral development of the Asteraceae, supported by de novo genome and transcriptome sequences from dandelion (Taraxacum officinale)

Wei Xiong , Judith Risse , Lidija Berke , Tao Zhao , Henri van de Geest et al.
Frontiers in Plant Science, 2023, 14, ⟨10.3389/fpls.2023.1198909⟩
Article dans une revue hal-04233722 v1

Identification and Quantification of Glucosinolates and Phenolics in a Large Panel of Brassica napus Highlight Valuable Genetic Resources for Chemical Ecology and Breeding

Anani Amegan Missinou , Julie Ferreira de Carvalho , Nathalie Marnet , Thomas Delhaye , Oumayma Hamzaoui et al.
Journal of Agricultural and Food Chemistry, 2022, 70 (16), pp.5245-5261. ⟨10.1021/acs.jafc.1c08118⟩
Article dans une revue hal-03700611 v1
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Projet BrasExplor : élargir les ressources génétiques du CRB BrACySol pour Brassica oleracea et Brassica rapa

Cyril Falentin , Vincent Richer , Pascal Glory , Gwenaëlle Deniot , Julie Ferreira de Carvalho et al.
NOV'AE, 2022, Numéro Spécial #2 RARe, pp.21-27. ⟨10.17180/novae-2022-NS02-art03⟩
Article dans une revue hal-03790700 v1

Epigenomic and structural events preclude recombination in Brassica napus

Franz Boideau , Gautier Richard , Olivier Coriton , Virginie Huteau , Caroline Belser et al.
New Phytologist, 2022, 234 (2), pp.545-559. ⟨10.1111/nph.18004⟩
Article dans une revue hal-03651949 v1
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Untangling structural factors driving genome stabilization in nascent Brassica napus allopolyploids

Julie Ferreira de Carvalho , Solenn Stoeckel , Frédérique Eber , Maryse Lodé-Taburel , Marie-Madeleine Gilet et al.
New Phytologist, 2021, 230 (5), pp.2072-2084. ⟨10.1111/nph.17308⟩
Article dans une revue hal-03227311 v1
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Genome Size Variation and Comparative Genomics Reveal Intraspecific Diversity in Brassica rapa

Julien Boutte , Loeiz Maillet , Thomas Chaussepied , Sébastien Letort , Jean-Marc Aury et al.
Frontiers in Plant Science, 2020, 11, pp.577536. ⟨10.3389/fpls.2020.577536⟩
Article dans une revue hal-03137565 v1
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Long-read assembly of the Brassica napus reference genome Darmor-bzh

Mathieu Rousseau-Gueutin , Caroline Belser , Corinne Da silva , Gautier Richard , Benjamin Istace et al.
GigaScience, 2020, 9 (12), pp.giaa137. ⟨10.1093/gigascience/giaa137⟩
Article dans une revue (data paper) hal-03283975 v1

Impact of whole genome triplication on the evolutionary history and the functional dynamics of regulatory genes involved in Brassica self-incompatibility signalling pathway

Thanina Azibi , Houria Hadj-Arab , Maryse Lodé-Taburel , Julie Ferreira de Carvalho , Gwenn Trotoux et al.
Sexual Plant Reproduction, 2020, 33 (1), pp.43-58. ⟨10.1007/s00497-020-00385-x⟩
Article dans une revue hal-02784702 v1
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Cytonuclear interactions remain stable during allopolyploid evolution despite repeated whole-genome duplications in Brassica

Julie Ferreira de Carvalho , Jérémy Lucas , Gwenaëlle Deniot , Cyril Falentin , Olivier Filangi et al.
The Plant Journal, 2019, 98 (3), pp.434-447. ⟨10.1111/tpj.14228⟩
Article dans une revue hal-02019346 v1

Intergenerational environmental effects: functional signals in offspring transcriptomes and metabolomes after parental jasmonic acid treatment in apomictic dandelion

Koen Verhoeven , Eline Verbon , Thomas van Gurp , Carla Oplaat , Julie Ferreira de Carvalho et al.
New Phytologist, 2018, 217 (2), pp.871-882. ⟨10.1111/nph.14835⟩
Article dans une revue hal-03292207 v1
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Transcriptome response of the foundation plant Spartina alterniflora to the Deepwater Horizon oil spill

Mariano Alvarez , Julie Ferreira de Carvalho , Armel Salmon , Malika L Ainouche , Armand Cavé-Radet et al.
Molecular Ecology, 2018, 27 (14), pp.2986-3000. ⟨10.1111/mec.14736⟩
Article dans une revue hal-01811051 v2

Small RNAs Reflect Grandparental Environments in Apomictic Dandelion

Lionel Morgado , Veronica Preite , Carla Oplaat , Sarit Anava , Julie Ferreira de Carvalho et al.
Molecular Biology and Evolution, 2017, 34 (8), pp.2035-2040. ⟨10.1093/molbev/msx150⟩
Article dans une revue hal-03292326 v1

Gene expression variation in natural populations of hexaploid and allododecaploid Spartina species (Poaceae)

Julie Ferreira de Carvalho , Julien Boutte , Pierre Bourdaud , Houda Chelaifa , Kader Ainouche et al.
Plant Systematics and Evolution, 2017, 303 (8), pp.1061-1079. ⟨10.1007/s00606-017-1446-3⟩
Article dans une revue hal-01631555 v1

The relative roles of local climate adaptation and phylogeny in determining leaf-out timing of temperate tree species

Elsa Desnoues , Julie Ferreira de Carvalho , Constantin Zohner , Thomas Crowther
Forest Ecosystems, 2017, 4 (1), ⟨10.1186/s40663-017-0113-z⟩
Article dans une revue hal-03292321 v1
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Haplotype Detection from Next-Generation Sequencing in High-Ploidy-Level Species: 45S rDNA Gene Copies in the Hexaploid Spartina maritima

Julien Boutte , Benoît Aliaga , Oscar Lima , Julie Ferreira de Carvalho , Abdelkader Aïnouche et al.
G3, 2016, 6 (1), pp.29--40. ⟨10.1534/g3.115.023242⟩
Article dans une revue hal-01269912 v1
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Reference Transcriptomes and Detection of Duplicated Copies in Hexaploid and Allododecaploid Spartina Species (Poaceae)

Julie Boutte , Julie Ferreira de Carvalho , Mathieu Rousseau-Gueutin , Julie Poulain , Corinne da Silva et al.
Genome Biology and Evolution, 2016, 8 (9), pp.3030-3044. ⟨10.1093/gbe/evw209⟩
Article dans une revue hal-01412081 v1

Recent and dynamic transposable elements contribute to genomic divergence under asexuality

Julie Ferreira de Carvalho , Victor de Jager , Thomas van Gurp , Niels Wagemaker , Koen Verhoeven
BMC Genomics, 2016, 17 (1), ⟨10.1186/s12864-016-3234-9⟩
Article dans une revue hal-03292332 v1

Persistence, dispersal and genetic evolution of recently formed Spartina homoploid hybrids and allopolyploids in Southern England

Dalibor Huska , Ilia J. Leitch , Julie Ferreira de Carvalho , Andrew R. Leitch , Armel Salmon et al.
Biological Invasions, 2016, 18 (8), pp.2137-2151. ⟨10.1007/s10530-015-0956-6⟩
Article dans une revue hal-01371822 v1

Heritable gene expression differences between apomictic clone members in Taraxacum officinale: Insights into early stages of evolutionary divergence in asexual plants

Julie Ferreira de Carvalho , Carla Oplaat , Nikolaos Pappas , Martijn Derks , Dick de Ridder et al.
BMC Genomics, 2016, 17 (1), ⟨10.1186/s12864-016-2524-6⟩
Article dans une revue hal-03292408 v1
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The first complete chloroplast genome of the Genistoid legume Lupinus luteus: evidence for a novel major lineage-specific rearrangement and new insights regarding plastome evolution in the legume family

Guillaume E. Martin , Mathieu Rousseau-Gueutin , Solenn Cordonnier , Oscar Lima , Sophie Michon-Coudouel et al.
Annals of Botany, 2014, 113 (7), pp.1197-1210. ⟨10.1093/aob/mcu050⟩
Article dans une revue hal-01061902 v1

Transcriptome de novo assembly from next-generation sequencing and comparative analyses in the hexaploid salt marsh species Spartina maritima and Spartina alterniflora (Poaceae)

Julie Ferreira de Carvalho , Julie Poulain , Corinne da Silva , Patrick Wincker , Sophie Michon-Coudouel et al.
Heredity, 2013, 110 (2), pp.181-193. ⟨10.1038/hdy.2012.76⟩
Article dans une revue hal-00797941 v1

Exploring the genome of the salt-marsh Spartina maritima (Poaceae, Chloridoideae) through BAC end sequence analysis

Julie Ferreira de Carvalho , Houda Chelaifa , Julien Boutte , Julie Poulain , Arnaud Couloux et al.
Plant Molecular Biology, 2013, 83 (6), pp.606. ⟨10.1007/s11103-013-0111-7⟩
Article dans une revue istex hal-00943497 v1
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The Intertwined Chloroplast and Nuclear Genome Coevolution in Plants

Mathieu Rousseau-Gueutin , Jean Keller , Julie Ferreira de Carvalho , Abdelkader Ainoüche , Guillaume Martin
Diah Ratnadewi; Dr. Hamim. Plant Growth and Regulation - Alterations to Sustain Unfavorable Conditions, InTechOpen, 2018, 978-1-78984-285-2. ⟨10.5772/intechopen.75673⟩
Chapitre d'ouvrage hal-02787510 v1

Polyploid evolution in Spartina: Dealing with highly redundant genomes

Malika L. Aïnouche , Houda Chelaifa , Julie Ferreira de Carvalho , Sidonie Bellot , Abdelkader Aïnouche et al.
Pamela S. Soltis, Douglas E. Soltis. Polyploidy and Genome Evolution, Springer, pp.225-244, 2012, 978-3-642-31441-4
Chapitre d'ouvrage hal-01110233 v1

Investigation of molecular mechanisms implicated in apple scab quantitative resistance using untargeted metabolic QTL mapping

Romane Lapous , Florent Magot , Romain Larbat , Helene Muranty , Charles-Eric Durel et al.
Scientific Day of Doctoral School VAAME, Jun 2024, Nantes (France), France
Communication dans un congrès hal-04665611 v1

Combinaison de données “-omiques” pour prédire la résistance du pommier à la tavelure

Romane Lapous , Caroline Denancé , Julie Ferreira de Carvalho , Charles-Eric Durel , Hélène Muranty
Séminaire du réseau R2D2, Nov 2023, Angers, France
Communication dans un congrès hal-04665615 v1

Genome Stabilization after Allopolyploidization in nascent Brassica napus

Julie Ferreira de Carvalho , Solenn Stoeckel , Frédérique Eber , Maryse Lodé-Taburel , Marie- Madeleine Gilet et al.
Plant and Animal Genome Conference, Jan 2020, San Diego (California), United States
Communication dans un congrès hal-04665576 v1

Co-evolution of chloroplast and nuclear genomes in flowering plants and impact of allopolyploidy on fine tune cytonuclear interactions.

Mathieu Rousseau-Gueutin , Julie Ferreira de Carvalho , Jérémy Lucas , Gwenaëlle Deniot , Cyril Falentin et al.
International Conference on Polyploidy, Jun 2019, Ghent, Belgium
Communication dans un congrès hal-03318182 v1

Cytonuclear interactions remain stable during allopolyploid evolution despite repeated wholegenome duplications

Julie Ferreira de Carvalho , Jérémy Lucas , Gwenaëlle Deniot , Cyril Falentin , Olivier Filangi et al.
21st Crucifer Genetics Conference on Brassica - Brassica 2018, Jul 2019, Saint Malo, France
Communication dans un congrès hal-04665569 v1

Structural and functional evolutionary dynamics of duplicated genes and genomes in nascent and natural B. napus

Mathieu Rousseau-Gueutin , Jérémy Lucas , France Denoeud , Julie Ferreira de Carvalho , Zhesi He et al.
21st Crucifer Genetics Conference on Brassica - Brassica 2018, Jul 2019, Saint-Malo, France
Communication dans un congrès hal-03318226 v1

How a polyploid becomes a new species: example from the Brassica model.

Mathieu Rousseau-Gueutin , Julie Ferreira de Carvalho , J. Lucas , France Denoeud , Fabrice Legeai et al.
International Conference on Environmental and Agronomical Genomics, 2018, Paris, France
Communication dans un congrès hal-03318223 v1

Impact of structural variations on the meiotic stability and plant fertility of the allotetraploid B. napus (oilseed rape)

Mathieu Rousseau-Gueutin , Julie Ferreira de Carvalho , Solenn Stoeckel , Jérôme Morice , Marie-Madeleine Gilet et al.
Second Joint Congress on Evolutionary Biology, Aug 2018, Montpellier, France
Communication dans un congrès hal-03318231 v1

Genome merger and duplication as springboards for plant invasion: Lessons from Spartina

Malika L. Aïnouche , Armand Cavé-Radet , Delphine Giraud , Alex Baumel , Blanca Gallego-Tévar et al.
International Conference on Ecological Sciences, SFEcologie2018, SFEcologie, Oct 2018, Rennes, France
Communication dans un congrès hal-02436817 v1

Structural and functional consequences of transposable elements after multiple Whole-Genome Duplication events

Julie Ferreira de Carvalho , Thomas Chaussepied , Sébastien Letort , Anne-Marie Chèvre , Mathieu Rousseau-Gueutin
Dynamique des Génomes végétaux, 2018, Rennes, France
Communication dans un congrès hal-03318224 v1

Cytonuclear interactions overcome inter-genomic conflict resulting from interspecific hybridization and genome doubling

Julie Ferreira de Carvalho , Jérémy Lucas , Cyril Falentin , Gwenaëlle Deniot , Olivier Filangi et al.
Second Joint Congress on Evolutionary Biology, Aug 2018, Montpellier, France
Communication dans un congrès hal-03318235 v1

Transcriptomic responses to challenging environments in Spartina alterniflora populations

Christina L. Richards , Mariano Alvarez , Julie Ferreira de Carvalho , Armand Cavé-Radet , Abdelhak El Amrani et al.
Workshop DYNAGEV2017, Jun 2017, Montpellier, France
Communication dans un congrès hal-02435012 v1

Unending hybridization and polyploid speciation stories: Lessons from Spartina (Poaceae)

Malika L. Aïnouche , Alex Baumel , Blanca Gallego-Tévar , Jesus Castillo , Mathieu Rousseau-Gueutin et al.
XV OPTIMA Meeting, Organization for the Phyto-Taxonomic Investigation of the Mediterranean Area, Jun 2016, Montpellier, France
Communication dans un congrès hal-02422822 v1

Genome merger as evolutionary springboard: Insights from recurrent hybridization and polyploidy in Spartina

Malika L. Aïnouche , Houda Chelaifa , Mathieu Rousseau-Gueutin , Julien Boutte , Hélène Rousseau et al.
International Conference on Hybridization and Polyploidy (ICPHB-2016), Apr 2016, Rovinj, Croatia
Communication dans un congrès hal-02422781 v1

Polyploidy, genome evolution and functional novelty in genus SpartinaI (Poaceae)

Malika Ainouche , Mathieu Rousseau-Gueutin , Hélène Rousseau , Julien Boutte , Sidonie Bellot et al.
International Conference « Evolution of Plant Phenotypes: from genomes to traits », Mar 2015, Barcelone, Spain
Communication dans un congrès hal-01162082 v1

The challenges of genomics in polyploidy Spartina species: How to deal with hybrid genomes and high redundancy?

Armel Salmon , Julien Boutte , Julie Ferreira de Carvalho , Mathieu Rousseau-Gueutin , Malika Ainouche
PAG XXIII Plant and Animal Genome Conference, Jan 2015, San Diego, United States
Communication dans un congrès hal-01162085 v1

The challenges of genomics in polyploidy Spartina species: How to deal with hybrid genomes and high redundancy?

Armel Salmon , Julien Boutte , Julie Ferreira de Carvalho , Mathieu Rousseau-Gueutin , Malika L. Aïnouche
PAG XXIII Plant and Animal Genome Conference, Jan 2015, San Diego, United States
Communication dans un congrès hal-02422739 v1

Bac sequencing analyses in the hexaploid Spartina maritime (Poaceae): Homoeolog divergence and microsynteny in the grass family

Carine Charron , Mathieu Rousseau-Gueutin , Julie Ferreira de Carvalho , Houda Chelaifa , Julien Boutte et al.
Réunion du groupe « Cytogénétique et Polyploïdie », May 2014, Clermont-Ferrand, France
Communication dans un congrès hal-01108395 v1

Transcriptomic response to hydrocarbon stress in Spartina alterniflora

Mariano Alvarez , Armel Salmon , Julie Ferreira de Carvalho , Malika Ainouche , Christina L. Richards
International Conference on Invasive Spartina 2014, UMR CNRS 6553 ECOBIO, Jul 2014, Rennes, France
Communication dans un congrès hal-01108408 v1

Hybridation, polyploidie et evolution des génomes : le cas des spartines envahissant les marais salés

Malika Ainouche , Armel Salmon , Mathieu Rousseau-Gueutin , Julien Boutte , Hélène Rousseau et al.
Colloque de lancement du Groupement de Recherches CNRS « Invasions Biologiques », UMR CNRS 6553 ECOBIO, Oct 2014, Rennes, France
Communication dans un congrès hal-01108368 v1

Recurrent polyploidy in the salt marsh genus Spartina: Lessons and challenges

Malika Ainouche , Julie Ferreira de Carvalho , Julien Boutte , Sidonie Bellot , Mathieu Rousseau-Gueutin et al.
PAG XXII Plant and Animal Genome Conference, Jan 2014, San Diego, United States. 1 p
Communication dans un congrès hal-01108383 v1

The challenges of genomics in polyploid Spartina species: How to deal with hydrid genomes and high redundancy?

Armel Salmon , Julien Boutte , Julie Ferreira de Carvalho , Mathieu Rousseau-Gueutin , Malika Ainouche
International Conference on Invasive Spartina 2014, Jul 2014, Rennes, France
Communication dans un congrès hal-01108413 v1

Population level study of genetic and epigenetic variability of rRNA genes in invasive species Spartina anglica

D. Huskaz , Julie Ferreira de Carvalho , Andrew Leitch , Malika Ainouche , Ales Kovarik
French Annual Polyploidy and Cytogenetics Meeting, May 2013, Rennes, France
Communication dans un congrès hal-01108846 v1

Polyploidy speciation and genome evolution: Lessons from recent allopolyploids

Malika Ainouche , Houda Chelaifa , Julie Ferreira de Carvalho , Julien Boutte , Sidonie Bellot et al.
XVIIth Evolutionary Biology Meeting, Sep 2013, Marseille, France
Communication dans un congrès hal-01108428 v1

Automatized detection of duplicated copies from NGS data: Application to 45S rDNA and coding genes in the hexaploid Spartina maritime (Poaceae)

Julien Boutte , Benoit Aliaga , Julie Ferreira de Carvalho , Oscar Lima , Sophie Coudouel et al.
Rencontres ALPHY/PhyloSIB, Feb 2013, Lyon, France
Communication dans un congrès hal-01108442 v1

Evolutionary dynamics of the chloroplast genome: Insights from comparative analyses in the legume family

Mathieu Rousseau-Gueutin , Guillaume Martin , Solene Cordonnier , Oscar Lima , Sophie Michon-Coudouel et al.
Colloque « Génomique Environnementale », Nov 2013, Rennes, France
Communication dans un congrès hal-01108884 v1

Ecological genomics of invasive polyploids: Case study from hexaploid and allo-dodecaploid Spartina species colonizing salt marshes

Julie Ferreira de Carvalho , Julie Poulain , Corinne da Silva , Patrick Wincker , Sophie Coudouel et al.
International Conference of Ployploidy, Hybridization and Biodiversity (ICPHB), May 2012, Pruhonice, Czech Republic
Communication dans un congrès hal-01108907 v1

Ecological genomics of the recent Spartina hybrids and allopolyploid invading salt-marshes

Malika L. Aïnouche , Houda Chelaifa , Julie Ferreira de Carvalho , Sidonie Bellot , Armel Salmon
13th Congress of the European Society for Evolutionary Biology, European Society for Evolutionary Biology, Aug 2011, Tübingen, Germany
Communication dans un congrès hal-01108929 v1

Vers la caractérisation des compartiments codant et répété du génome des spartines polyploïdes par séquençage en masse

Julie Ferreira de Carvalho , Houda Chelaifa , Jiri Macas , Oscar Lima , Sophie Coudouel et al.
Colloque « Biodiversité, Histoire des Espèces, Evolution des Génomes », Jun 2011, Rennes, France
Communication dans un congrès hal-01108953 v1

Identifying pleiotropic alleles in biotic stress resistance and exploring underlying molecular mechanisms for apple orchard durability

Paul Galleron , Caroline Denancé , Matthieu Gaucher , Charles-Eric Durel , Helene Muranty et al.
12th Rosaceae Genomics Conference (RGC 12), May 2025, Sant Feliu de Guíxols, Spain
Poster de conférence hal-05085632 v1

Development and preliminary analysis of a new multispecies genotyping array including apple and pear SNPs

Caroline Denancé , Julie Ferreira de Carvalho , Nicholas Howard , Elena López-Girona , David Chagné et al.
12th Rosaceae Genomics Conference (RGC 12), May 2025, Sant Feliu de Guíxols, Spain
Poster de conférence hal-05085584 v1

Investigation of molecular mechanisms involved in apple scab quantitative resistance using untargeted metabolic QTL mapping

Romane Lapous , Romain Larbat , Florent Magot , Helene Muranty , Charles-Eric Durel et al.
12th Rosaceae Genomics Conference (RGC 12), May 2025, Sant Feliu de Guíxols, Spain
Poster de conférence hal-05085648 v1
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Genome-wide association studies to detect new resistance alleles for apple scab and fire blight

Paul Galleron , Laval Jacquin , Caroline Denancé , Romane Lapous , Charles-Eric Durel et al.
DynaGev, Oct 2024, ANGERS, France
Poster de conférence hal-04728149 v1

Investigation of molecular mechanisms implicated in apple scab quantitative resistance using untargeted metabolic QTL mapping

Romane Lapous , Florent Magot , Helene Muranty , Charles-Eric Durel , Julie Ferreira de Carvalho
XVI EUCARPIA Symposium on Fruit Breeding and Genetics, Sep 2023, Dresden-Pillnitz, Germany
Poster de conférence hal-04665619 v1

Functional consequences of transposable elements on duplicated gene transcription and retention in polyploid Brassica species

Julie Ferreira de Carvalho , Julien Boutte , Loeiz Maillet , Thomas Chaussepied , Sébastien Letort et al.
International Conference on Polyploidy, Jun 2019, Ghent, Belgium
Poster de conférence hal-03318194 v1

Shift to self-compatibility in synthetic allopolyploid Brassica napus

Thanina Azibi , Mathieu Rousseau-Gueutin , Gwenn Trotoux , Maryse Lodé-Taburel , Julie Ferreira de Carvalho et al.
21st Crucifer Genetics Conference on Brassica - Brassica 2018, Jul 2018, Saint-Malo, France
Poster de conférence hal-03318239 v1

Bac sequencing analyses in the hexaploid Spartina maritime (Poaceae): Homoeolog divergence and microsynteny in the grass family

Carine Charron , Mathieu Rousseau-Gueutin , Julie Ferreira de Carvalho , Houda Chelaifa , Julien Boutte et al.
International Conference on Invasive Spartina 2014, Jul 2014, Rennes, France. , 1 p., 2014
Poster de conférence hal-01109652 v1

The hexaploid Spartina maritime (Poaceae, Chloridoidea) genome: Composition and evolution in the grass family

Julie Ferreira de Carvalho , Carine Charron , Houda Chelaifa , Julien Boutte , Mathieu Rousseau-Gueutin et al.
Plant Genome Evolution Meeting, Sep 2013, Amsterdam, Netherlands. , 2013
Poster de conférence hal-01110188 v1

Genome and transcriptome analyses in hexaploid Spartina species (Poaceae) colonizing salt marshes

Julie Ferreira de Carvalho , Julie Poulain , Corinne da Silva , Patrick Wincker , Sophie Coudouel et al.
PAG XIX Plant and Animal Genome Conference, Jan 2012, San Diego, United States
Poster de conférence hal-01110212 v1

Automatized detection of duplicated copies from NGS data: Application to 45S rDNA and coding genes in hexaploid Spartina species (Poaceae)

Julien Boutte , Benoit Aliaga , Julie Ferreira de Carvalho , Oscar Lima , Sophie Coudouel et al.
International Conference of Ployploidy, Hybridization and Biodiversity (ICPHB), May 2012, Prague, Czech Republic
Poster de conférence hal-01110201 v1