Magali LESCOT

IRHC CNRS BAP E - Cheffe de projet en bioinformatique et génomique environnementale marine - Responsable des services web: https://tara-oceans.mio.osupytheas.fr/
85%
Libre accès
34
Documents
Affiliations actuelles
  • Centre National de la Recherche Scientifique (CNRS)
  • Institut méditerranéen d'océanologie (MIO)
  • Global Oceans Systems Ecology & Evolution - Tara Oceans (GOSEE)
Contact

Présentation

Postes occupés

  • 2006-2016 – Ingénieur de recherche en bioinformatique microbienne – CNRS, IGS, Aix-Marseille Université, Marseille
  • 2004-2005 – Chercheur en bioinformatique et génomique des plantes tropicales – CIRAD, Montpellier
  • 2003 – Post-Doctorant en bioinformatique – INSERM, Marseille
  • 2001-2003 – ATER en bioinformatique – IBDML, Marseille
  • 1999-2001 – Doctorant en bioinformatique – Université de Leuven et Gand, Belgique
  • 1997-1998 – Ingénieur en biologie moléculaire et biotechnologie végétale – Ohio State University, Colombus, OHIO, USA

Cursus

  • 2002 – Doctorat bioinformatique, biologie structurale et génomique – AMU, Marseille
  • 2001 – DEA Bioinformatique – Université Notre dame de la paix namur, Belgique
  • 1997 – Diplome d’ingénieur agronome – ENSAIA, Nancy
  • 1995 – Maitrise biochimie et génétique du développement – AMU, Marseille

Publications

Publications

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Indexer les données génomiques : un défi de taille à relever

Téo Lemane , Magali Lescot , Pierre Peterlongo
Interstices, 2024, pp.1-5
Article dans une revue hal-04757321 v1
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First release of the Pelagic Size Structure database: global datasets of marine size spectra obtained from plankton imaging devices

Mathilde Dugenne , Marco Corrales-Ugalde , Jessica Luo , Rainer Kiko , Todd O'Brien et al.
Earth System Science Data, 2024, 16 (6), pp.2971-2999. ⟨10.5194/essd-16-2971-2024⟩
Article dans une revue hal-04648046 v1
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Indexing and real-time user-friendly queries in terabyte-sized complex genomic datasets with kmindex and ORA

Téo Lemane , Nolan Lezzoche , Julien Lecubin , Eric Pelletier , Magali Lescot et al.
Nature Computational Science, 2024, 4 (2), pp.104-109. ⟨10.1038/s43588-024-00596-6⟩
Article dans une revue hal-04489740 v1
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Functional repertoire convergence of distantly related eukaryotic plankton lineages abundant in the sunlit ocean

Tom Delmont , Morgan Gaia , Damien Hinsinger , Paul Frémont , Chiara Vanni et al.
Cell Genomics, 2022, 2 (5), pp.100123. ⟨10.1016/j.xgen.2022.100123⟩
Article dans une revue hal-03872935 v2
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The Ocean Gene Atlas v2.0: online exploration of the biogeography and phylogeny of plankton genes

Caroline Vernette , Julien Lecubin , Pablo Sánchez , (team) Tara Oceans Coordinators , Shinichi Sunagawa et al.
Nucleic Acids Research, 2022, 11, ⟨10.1093/nar/gkac420⟩
Article dans une revue hal-03696136 v1

The Ocean Barcode Atlas: a web service to explore the biodiversity and biogeography of marine organisms.

Caroline Vernette , Nicolas Henry , Julien Lecubin , Colomban de Vargas , Pascal Hingamp et al.
Molecular Ecology Resources, 2021, ⟨10.1111/1755-0998.13322⟩
Article dans une revue hal-03115219 v1
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Bioluminescence and Photoreception in Unicellular Organisms: Light-Signalling in a Bio-Communication Perspective

Youri Timsit , Magali Lescot , Martha Valiadi , Fabrice Not
International Journal of Molecular Sciences, 2021, 22 (21), pp.11311. ⟨10.3390/ijms222111311⟩
Article dans une revue hal-03402318 v1

Tara Oceans: towards global ocean ecosystems biology

Shinichi Sunagawa , Silvia Acinas , Peer Bork , Chris Bowler , Silvia Acinas et al.
Nature Reviews Microbiology, 2020, 18 (8), pp.428-445. ⟨10.1038/s41579-020-0364-5⟩
Article dans une revue hal-04394809 v1
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Diversity and evolution of bacterial bioluminescence genes in the global ocean

Thomas Vannier , Pascal Hingamp , Floriane Turrel , Lisa Tanet , Magali Lescot et al.
NAR Genomics and Bioinformatics, 2020, 2 (2), ⟨10.1093/nargab/lqaa018⟩
Article dans une revue hal-02514159 v1
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Community‐Level Responses to Iron Availability in Open Ocean Plankton Ecosystems

Luigi Caputi , Quentin Carradec , Damien Eveillard , Amos Kirilovsky , Eric Pelletier et al.
Global Biogeochemical Cycles, 2019, 33 (3), pp.391-419. ⟨10.1029/2018GB006022⟩
Article dans une revue hal-02999805 v1
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The Ocean Gene Atlas: exploring the biogeography of plankton genes online

Emilie Villar , Thomas Vannier , Caroline Vernette , Magali Lescot , Miguelangel Cuenca et al.
Nucleic Acids Research, 2018, 46 (W1), pp.gky376. ⟨10.1093/nar/gky376⟩
Article dans une revue hal-01803597 v1

H4K44 Acetylation Facilitates Chromatin Accessibility during Meiosis

Matthieu Legendre , Audrey Lartigue , Lionel Bertaux , Sandra Jeudy , Julia Bartoli et al.
Cell Reports, 2015, 13 (9), pp.1772-1780. ⟨10.1016/j.celrep.2015.10.070⟩
Article dans une revue hal-02193350 v1
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Reverse transcriptase genes are highly abundant and transcriptionally active in marine plankton assemblages

Magali Lescot , Pascal Hingamp , Kenji K Kojima , Emilie Villar , Sarah Romac et al.
The International Society of Microbiologial Ecology Journal, 2015, 10 (5), pp.1134-1146. ⟨10.1038/ismej.2015.192⟩
Article dans une revue hal-01258212 v1

In-depth study of Mollivirus sibericum , a new 30,000-y-old giant virus infecting Acanthamoeba

Matthieu Legendre , Audrey Lartigue , Lionel Bertaux , Sandra Jeudy , Julia Bartoli et al.
Proceedings of the National Academy of Sciences of the United States of America, 2015, 112, pp.E5327 - E5335. ⟨10.1073/pnas.1510795112⟩
Article dans une revue cea-01825900 v1
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Life-cycle modification in open oceans accounts for genome variability in a cosmopolitan phytoplankton

Peter von Dassow , Uwe John , Hiroyuki Ogata , Ian Probert , El Mahdi Bendif et al.
The International Society of Microbiologial Ecology Journal, 2015, 9 (6), pp.1365-1377. ⟨10.1038/ismej.2014.221⟩
Article dans une revue hal-01245155 v1

Genome of Phaeocystis globosa virus PgV-16T highlights the common ancestry of the largest known DNA viruses infecting eukaryotes

S. Santini , J. Bartoli , O. Poirot , Magali Lescot , C. Abergel et al.
Proceedings of the National Academy of Sciences of the United States of America, 2013, 110 (26), pp.10800-10805. ⟨10.1073/pnas.1303251110⟩
Article dans une revue hal-02978222 v1
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Pandoraviruses: Amoeba Viruses with Genomes Up to 2.5 Mb Reaching That of Parasitic Eukaryotes

Nadège Philippe , Matthieu Legendre , Gabriel Doutre , Yohann Couté , Olivier Poirot et al.
Science, 2013, 341 (6143), pp.281-286. ⟨10.1126/science.1239181⟩
Article dans une revue cea-00862677 v1
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The genome sequence of Brucella pinnipedialis B2/94 sheds light on the evolutionary history of the genus Brucella

Stéphane Audic , Magali Lescot , Jean-Michel Claverie , Axel Cloeckaert , Michel S. Zygmunt
BMC Evolutionary Biology, 2011, 11, pp.200. ⟨10.1186/1471-2148-11-200⟩
Article dans une revue hal-01258246 v1
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mRNA deep sequencing reveals 75 new genes and a complex transcriptional landscape in Mimivirus

Matthieu Legendre , Stéphane Audic , Olivier Poirot , Pascal Hingamp , Virginie Seltzer et al.
Genome Research, 2010, 20 (5), pp.664 - 674. ⟨10.1101/gr.102582.109⟩
Article dans une revue hal-03894299 v1

The Genome of Borrelia recurrentis, the Agent of Deadly Louse-Borne Relapsing Fever, Is a Degraded Subset of Tick-Borne Borrelia duttonii

Magali Lescot , Stephane Audic , Catherine Robert , Thi Tien Nguyen , Guillaume Blanc et al.
PLoS Genetics, 2008, 4 (9), pp.e1000185. ⟨10.1371/journal.pgen.1000185⟩
Article dans une revue hal-02978141 v1

A Single Banana Streak Virus Integration Event in the Banana Genome as the Origin of Infectious Endogenous Pararetrovirus

Philippe Gayral , Juan-Carlos Noa-Carrazana , Magali Lescot , Fabrice Lheureux , Benham Lockhart et al.
Journal of Virology, 2008, 82 (13), pp.6697-6710. ⟨10.1128/JVI.00212-08⟩
Article dans une revue hal-02978140 v1
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Insights into the Musa genome: Syntenic relationships to rice and between Musa species

Magali Lescot , Pietro Piffanelli , Ana Ciampi , Manuel Ruiz , Guillaume Blanc et al.
BMC Genomics, 2008, 9 (1), ⟨10.1186/1471-2164-9-58⟩
Article dans une revue hal-02978134 v1
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Phylogeny.fr: robust phylogenetic analysis for the non-specialist

Alexis Dereeper , Valentin Guignon , Guillaume Blanc , Stéphane Audic , Sylvain Buffet et al.
Nucleic Acids Research, 2008, 36 (Web Server), pp.W465-W469. ⟨10.1093/nar/gkn180⟩
Article dans une revue lirmm-00324099 v1

Annotation of a 95-kb Populus deltoides genomic sequence reveals a disease resistance gene cluster and novel class I and class II transposable elements

Magali Lescot , S. Rombauts , J. Zhang , S. Aubourg , C. Mathé et al.
TAG Theoretical and Applied Genetics, 2004, 109 (1), pp.10-22. ⟨10.1007/s00122-004-1621-0⟩
Article dans une revue istex hal-02978143 v1
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A Gibbs Sampling Method to Detect Overrepresented Motifs in the Upstream Regions of Coexpressed Genes

Gert Thijs , Kathleen Marchal , Magali Lescot , Stephane Rombauts , Bart de Moor et al.
Journal of Computational Biology, 2002, 9 (2), pp.447-464. ⟨10.1089/10665270252935566⟩
Article dans une revue hal-02978260 v1

Effect of auxin, cytokinin, and sucrose on cell cycle gene expression in Arabidopsis thaliana cell suspension cultures

Caroline Richard , Magali Lescot , Dirk Inzé , Lieven de Veylder
Plant Cell, Tissue and Organ Culture, 2002, 69 (2), pp.167-176. ⟨10.1023/a:1015241709145⟩
Article dans une revue istex hal-02964689 v1
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PlantCARE, a database of plant cis-acting regulatory elements and a portal to tools for in silico analysis of promoter sequences

Magali Lescot , Patrice Dehais , G. Thijs , K. Marchal , Y. Moreau et al.
Nucleic Acids Research, 2002, 30 (1), pp.325-327. ⟨10.1093/nar/30.1.325⟩
Article dans une revue hal-02978179 v1
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Inducibility by pathogen attack and developmental regulation of the rice Ltp1 gene

Emmanuel Guiderdoni , Maria José Cordero , Florence Vignols , José Manuel Garcia-Garrido , Magali Lescot et al.
Plant Molecular Biology, 2002, 49 (6), pp.679-695. ⟨10.1023/a:1015595100145⟩
Article dans une revue hal-02978251 v1

A higher-order background model improves the detection of promoter regulatory elements by Gibbs sampling

G. Thijs , Magali Lescot , K. Marchal , S. Rombauts , B. de Moor et al.
Bioinformatics, 2001, 17 (12), pp.1113-1122. ⟨10.1093/bioinformatics/17.12.1113⟩
Article dans une revue hal-02978262 v1

Insights into the genome of Musa (banana), a giant herb bearing fleshy fruits

Angélique d'Hont , Pietro Piffanelli , Magali Lescot , Chris Town , Jim Leebens-Mack et al.
17. Conference Plant & Animal Genomes, Jan 2009, San Diego, United States
Communication dans un congrès hal-02756111 v1